JP2024543762A - ヌクレオチド塩基コールを決定するためのクラスタ固有シグナル補正の生成 - Google Patents

ヌクレオチド塩基コールを決定するためのクラスタ固有シグナル補正の生成 Download PDF

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JP2024543762A
JP2024543762A JP2023579819A JP2023579819A JP2024543762A JP 2024543762 A JP2024543762 A JP 2024543762A JP 2023579819 A JP2023579819 A JP 2023579819A JP 2023579819 A JP2023579819 A JP 2023579819A JP 2024543762 A JP2024543762 A JP 2024543762A
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cluster
specific
phasing
nucleotide
coefficients
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JP2024543762A5 (https=
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エリック・ジョン・オジャード
ジョン・エス・ヴィエチェリ
ギャヴィン・デレク・パーナビー
ボ・ル
ラミ・メヒオ
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イルミナ インコーポレイテッド
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    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B30/00—ICT specially adapted for sequence analysis involving nucleotides or amino acids
    • G16B30/10—Sequence alignment; Homology search
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6869—Methods for sequencing
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B30/00—ICT specially adapted for sequence analysis involving nucleotides or amino acids
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B40/00—ICT specially adapted for biostatistics; ICT specially adapted for bioinformatics-related machine learning or data mining, e.g. knowledge discovery or pattern finding
    • G16B40/10—Signal processing, e.g. from mass spectrometry [MS] or from PCR

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  • Life Sciences & Earth Sciences (AREA)
  • Physics & Mathematics (AREA)
  • Health & Medical Sciences (AREA)
  • Engineering & Computer Science (AREA)
  • Chemical & Material Sciences (AREA)
  • Proteomics, Peptides & Aminoacids (AREA)
  • Biotechnology (AREA)
  • Bioinformatics & Cheminformatics (AREA)
  • Biophysics (AREA)
  • General Health & Medical Sciences (AREA)
  • Medical Informatics (AREA)
  • Spectroscopy & Molecular Physics (AREA)
  • Organic Chemistry (AREA)
  • Analytical Chemistry (AREA)
  • Evolutionary Biology (AREA)
  • Theoretical Computer Science (AREA)
  • Bioinformatics & Computational Biology (AREA)
  • Zoology (AREA)
  • Wood Science & Technology (AREA)
  • Molecular Biology (AREA)
  • Immunology (AREA)
  • Microbiology (AREA)
  • Genetics & Genomics (AREA)
  • General Engineering & Computer Science (AREA)
  • Biochemistry (AREA)
  • Computer Vision & Pattern Recognition (AREA)
  • Software Systems (AREA)
  • Data Mining & Analysis (AREA)
  • Public Health (AREA)
  • Bioethics (AREA)
  • Artificial Intelligence (AREA)
  • Signal Processing (AREA)
  • Evolutionary Computation (AREA)
  • Epidemiology (AREA)
  • Databases & Information Systems (AREA)
  • Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
JP2023579819A 2021-12-02 2022-11-28 ヌクレオチド塩基コールを決定するためのクラスタ固有シグナル補正の生成 Pending JP2024543762A (ja)

Applications Claiming Priority (3)

Application Number Priority Date Filing Date Title
US202163285187P 2021-12-02 2021-12-02
US63/285,187 2021-12-02
PCT/US2022/080512 WO2023102354A1 (en) 2021-12-02 2022-11-28 Generating cluster-specific-signal corrections for determining nucleotide-base calls

Publications (2)

Publication Number Publication Date
JP2024543762A true JP2024543762A (ja) 2024-11-26
JP2024543762A5 JP2024543762A5 (https=) 2025-12-08

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JP2023579819A Pending JP2024543762A (ja) 2021-12-02 2022-11-28 ヌクレオチド塩基コールを決定するためのクラスタ固有シグナル補正の生成

Country Status (6)

Country Link
US (1) US20230343415A1 (https=)
EP (1) EP4441743A1 (https=)
JP (1) JP2024543762A (https=)
KR (1) KR20240116364A (https=)
CN (1) CN117581303A (https=)
WO (1) WO2023102354A1 (https=)

Families Citing this family (4)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
KR102949918B1 (ko) 2023-11-21 2026-04-07 전남대학교산학협력단 Dna 저장장치의 오류 정정을 위한 실시간 염기서열 자동 분석 장치 및 방법
US20250210137A1 (en) * 2023-12-20 2025-06-26 Illumina, Inc. Directly determining signal-to-noise-ratio metrics for accelerated convergence in determining nucleotide-base calls and base-call quality
WO2025174774A1 (en) * 2024-02-12 2025-08-21 Illumina, Inc. Determining offline corrections for sequence specific errors caused by low complexity nucleotide sequences
WO2026072986A1 (en) * 2024-09-27 2026-04-02 Illumina, Inc. Determining offline corrections for sequence specific errors caused by low complexity sequences using a machine learning model

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EP1888743B1 (en) 2005-05-10 2011-08-03 Illumina Cambridge Limited Improved polymerases
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CN204832037U (zh) 2012-04-03 2015-12-02 伊鲁米那股份有限公司 检测设备
CA3181696A1 (en) * 2013-12-03 2015-06-11 Paul BELITZ Methods and systems for analyzing image data
US20230018469A1 (en) * 2021-07-19 2023-01-19 Illumina Software, Inc. Specialist signal profilers for base calling

Also Published As

Publication number Publication date
KR20240116364A (ko) 2024-07-29
WO2023102354A1 (en) 2023-06-08
US20230343415A1 (en) 2023-10-26
EP4441743A1 (en) 2024-10-09
CN117581303A (zh) 2024-02-20

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