JP2021526857A - 生体試料のフィンガープリンティングのための方法 - Google Patents

生体試料のフィンガープリンティングのための方法 Download PDF

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JP2021526857A
JP2021526857A JP2021518049A JP2021518049A JP2021526857A JP 2021526857 A JP2021526857 A JP 2021526857A JP 2021518049 A JP2021518049 A JP 2021518049A JP 2021518049 A JP2021518049 A JP 2021518049A JP 2021526857 A JP2021526857 A JP 2021526857A
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nucleic acid
sample
acid molecules
loci
fingerprint
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JPWO2019236906A5 (https=
JP2021526857A5 (https=
Inventor
アレクサンダー デ ヨング ロバートソン，
ロヒト カンナパン スリヴァス，
ティモシー ジョゼフ ウィルソン，
ニール ピーターマン，
ニコル ジャシンダ ランバート，
ハルク テツカン，
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レクセント バイオ， インコーポレイテッド
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    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B30/00—ICT specially adapted for sequence analysis involving nucleotides or amino acids
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B20/00—ICT specially adapted for functional genomics or proteomics, e.g. genotype-phenotype associations
    • G16B20/20—Allele or variant detection, e.g. single nucleotide polymorphism [SNP] detection
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6806—Preparing nucleic acids for analysis, e.g. for polymerase chain reaction [PCR] assay
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6869—Methods for sequencing
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B30/00—ICT specially adapted for sequence analysis involving nucleotides or amino acids
    • G16B30/10—Sequence alignment; Homology search
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B35/00—ICT specially adapted for in silico combinatorial libraries of nucleic acids, proteins or peptides
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B40/00—ICT specially adapted for biostatistics; ICT specially adapted for bioinformatics-related machine learning or data mining, e.g. knowledge discovery or pattern finding
    • G16B40/20—Supervised data analysis
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16H—HEALTHCARE INFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR THE HANDLING OR PROCESSING OF MEDICAL OR HEALTHCARE DATA
    • G16H10/00—ICT specially adapted for the handling or processing of patient-related medical or healthcare data
    • G16H10/40—ICT specially adapted for the handling or processing of patient-related medical or healthcare data for data related to laboratory analysis, e.g. patient specimen analysis

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  • Life Sciences & Earth Sciences (AREA)
  • Engineering & Computer Science (AREA)
  • Physics & Mathematics (AREA)
  • Health & Medical Sciences (AREA)
  • Chemical & Material Sciences (AREA)
  • Bioinformatics & Cheminformatics (AREA)
  • Proteomics, Peptides & Aminoacids (AREA)
  • General Health & Medical Sciences (AREA)
  • Biotechnology (AREA)
  • Biophysics (AREA)
  • Medical Informatics (AREA)
  • Analytical Chemistry (AREA)
  • Theoretical Computer Science (AREA)
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  • Organic Chemistry (AREA)
  • Molecular Biology (AREA)
  • Zoology (AREA)
  • Wood Science & Technology (AREA)
  • Genetics & Genomics (AREA)
  • Biochemistry (AREA)
  • Immunology (AREA)
  • Microbiology (AREA)
  • Data Mining & Analysis (AREA)
  • General Engineering & Computer Science (AREA)
  • Epidemiology (AREA)
  • Public Health (AREA)
  • Chemical Kinetics & Catalysis (AREA)
  • Artificial Intelligence (AREA)
  • Bioethics (AREA)
  • Computer Vision & Pattern Recognition (AREA)
  • Databases & Information Systems (AREA)
  • Evolutionary Computation (AREA)
  • Software Systems (AREA)
  • Library & Information Science (AREA)
  • Primary Health Care (AREA)
  • Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
  • Apparatus Associated With Microorganisms And Enzymes (AREA)
JP2021518049A 2018-06-06 2019-06-06 生体試料のフィンガープリンティングのための方法 Withdrawn JP2021526857A (ja)

Priority Applications (1)

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JP2024022736A JP2024056939A (ja) 2018-06-06 2024-02-19 生体試料のフィンガープリンティングのための方法

Applications Claiming Priority (3)

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US201862681642P 2018-06-06 2018-06-06
US62/681,642 2018-06-06
PCT/US2019/035871 WO2019236906A1 (en) 2018-06-06 2019-06-06 Methods for fingerprinting of biological samples

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JP2024022736A Division JP2024056939A (ja) 2018-06-06 2024-02-19 生体試料のフィンガープリンティングのための方法

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JP2021526857A true JP2021526857A (ja) 2021-10-11
JPWO2019236906A5 JPWO2019236906A5 (https=) 2022-06-13
JP2021526857A5 JP2021526857A5 (https=) 2022-06-13

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JP2024022736A Pending JP2024056939A (ja) 2018-06-06 2024-02-19 生体試料のフィンガープリンティングのための方法

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US (1) US20210151126A1 (https=)
EP (1) EP3791012A4 (https=)
JP (2) JP2021526857A (https=)
KR (1) KR20210022622A (https=)
CN (1) CN112384982A (https=)
AU (1) AU2019280867A1 (https=)
BR (1) BR112020024646A2 (https=)
CA (1) CA3101527A1 (https=)
IL (1) IL279184A (https=)
SG (1) SG11202011652QA (https=)
WO (1) WO2019236906A1 (https=)

Families Citing this family (4)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US20230135171A1 (en) * 2019-12-24 2023-05-04 Lexent Bio, Inc. Methods and systems for molecular disease assessment via analysis of circulating tumor dna
CN112349348B (zh) * 2020-11-05 2023-10-13 北京市农林科学院 分子标记指纹数据的比对方法、非暂存态存储介质和装置
US12518859B2 (en) * 2023-07-26 2026-01-06 Helix, Inc. Systems and methods for providing test results of gene sequencing data on a recurring basis
WO2025090739A1 (en) * 2023-10-27 2025-05-01 Grail, Inc. Systems and methods for assessing similarity between samples using genotype signatures

Family Cites Families (5)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US20020086289A1 (en) * 1999-06-15 2002-07-04 Don Straus Genomic profiling: a rapid method for testing a complex biological sample for the presence of many types of organisms
CA2786564A1 (en) * 2010-01-19 2011-07-28 Verinata Health, Inc. Identification of polymorphic sequences in mixtures of genomic dna by whole genome sequencing
WO2012058316A1 (en) * 2010-10-26 2012-05-03 Stanford University Non-invasive fetal genetic screening by sequencing analysis
KR102768285B1 (ko) * 2013-02-14 2025-02-13 더 리전츠 오브 더 유니버시티 오브 콜로라도, 어 바디 코퍼레이트 간질 폐렴의 위험을 예측하는 방법
CN106460062A (zh) * 2014-05-05 2017-02-22 美敦力公司 用于scd、crt、crt‑d或sca治疗识别和/或选择的方法和组合物

Non-Patent Citations (6)

* Cited by examiner, † Cited by third party
Title
JAE-JUNG KIM ET AL., INTERNATIONAL JOURNAL OF LEGAL MEDICINE, vol. 124, JPN6023015117, 2010, pages 125 - 131, ISSN: 0005036977 *
PENGELLY, REUBEN J. ET AL., GENOME MEDICINE, vol. 5, no. 89, JPN6023015119, 27 September 2013 (2013-09-27), ISSN: 0005175053 *
RONALD HUIJSMANS ET AL., JOURNAL OF MOLECULAR DIAGNOSTICS, vol. 9, no. 2, JPN6023015118, April 2007 (2007-04-01), ISSN: 0005036976 *
SOPHIE ZAAIJER ET AL., ELIFE, JPN6023015115, 28 November 2017 (2017-11-28), ISSN: 0005036979 *
YONGHONG DU ET AL., PLOS ONE, vol. 12, no. 9, JPN6023015116, 19 September 2017 (2017-09-19), ISSN: 0005036978 *
YOUSEFI, SOHEIL ET AL., BMC GENOMICS, vol. 19, no. 90, JPN6023015121, 25 January 2018 (2018-01-25), ISSN: 0005175052 *

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Publication number Publication date
JP2024056939A (ja) 2024-04-23
US20210151126A1 (en) 2021-05-20
SG11202011652QA (en) 2020-12-30
CN112384982A (zh) 2021-02-19
KR20210022622A (ko) 2021-03-03
BR112020024646A2 (pt) 2021-03-02
EP3791012A4 (en) 2022-03-09
WO2019236906A1 (en) 2019-12-12
IL279184A (en) 2021-01-31
EP3791012A1 (en) 2021-03-17
AU2019280867A1 (en) 2021-01-07
CA3101527A1 (en) 2019-12-12

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