JP2009511051A - 最小限の細菌ゲノム - Google Patents

最小限の細菌ゲノム Download PDF

Info

Publication number
JP2009511051A
JP2009511051A JP2008535578A JP2008535578A JP2009511051A JP 2009511051 A JP2009511051 A JP 2009511051A JP 2008535578 A JP2008535578 A JP 2008535578A JP 2008535578 A JP2008535578 A JP 2008535578A JP 2009511051 A JP2009511051 A JP 2009511051A
Authority
JP
Japan
Prior art keywords
gene
genes
protein
free
genitalium
Prior art date
Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
Pending
Application number
JP2008535578A
Other languages
English (en)
Japanese (ja)
Other versions
JP2009511051A5 (https=
Inventor
ジョン ティー． グラス
ハミルトン オー． スミス
クライド エー． サード ハッチソン
ニーナ ワイ． アルペロビッチ
ナサイラ アッサド‐ガルシア
Original Assignee
ザ ジェイ． クレイグ ベンター インスティテュート
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Application filed by ザ ジェイ． クレイグ ベンター インスティテュート filed Critical ザ ジェイ． クレイグ ベンター インスティテュート
Publication of JP2009511051A publication Critical patent/JP2009511051A/ja
Publication of JP2009511051A5 publication Critical patent/JP2009511051A5/ja
Pending legal-status Critical Current

Links

Images

Classifications

    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12N—MICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
    • C12N1/00—Microorganisms; Compositions thereof; Processes of propagating, maintaining or preserving microorganisms or compositions thereof; Processes of preparing or isolating a composition containing a microorganism; Culture media therefor
    • C12N1/20—Bacteria; Culture media therefor
    • C—CHEMISTRY; METALLURGY
    • C07—ORGANIC CHEMISTRY
    • C07K—PEPTIDES
    • C07K14/00—Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof
    • C07K14/195—Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof from bacteria
    • C—CHEMISTRY; METALLURGY
    • C07—ORGANIC CHEMISTRY
    • C07K—PEPTIDES
    • C07K14/00—Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof
    • C07K14/195—Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof from bacteria
    • C07K14/30—Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof from bacteria from Mycoplasmatales, e.g. Pleuropneumonia-like organisms [PPLO]
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12N—MICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
    • C12N1/00—Microorganisms; Compositions thereof; Processes of propagating, maintaining or preserving microorganisms or compositions thereof; Processes of preparing or isolating a composition containing a microorganism; Culture media therefor
    • C12N1/20—Bacteria; Culture media therefor
    • C12N1/205—Bacterial isolates
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12N—MICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
    • C12N9/00—Enzymes; Proenzymes; Compositions thereof; Processes for preparing, activating, inhibiting, separating or purifying enzymes
    • C12N9/14—Hydrolases (3)
    • C12N9/16—Hydrolases (3) acting on ester bonds (3.1)
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12P—FERMENTATION OR ENZYME-USING PROCESSES TO SYNTHESISE A DESIRED CHEMICAL COMPOUND OR COMPOSITION OR TO SEPARATE OPTICAL ISOMERS FROM A RACEMIC MIXTURE
    • C12P3/00—Preparation of elements or inorganic compounds except carbon dioxide
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12P—FERMENTATION OR ENZYME-USING PROCESSES TO SYNTHESISE A DESIRED CHEMICAL COMPOUND OR COMPOSITION OR TO SEPARATE OPTICAL ISOMERS FROM A RACEMIC MIXTURE
    • C12P7/00—Preparation of oxygen-containing organic compounds
    • C12P7/02—Preparation of oxygen-containing organic compounds containing a hydroxy group
    • C12P7/04—Preparation of oxygen-containing organic compounds containing a hydroxy group acyclic
    • C12P7/06—Ethanol, i.e. non-beverage
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12R—INDEXING SCHEME ASSOCIATED WITH SUBCLASSES C12C - C12Q, RELATING TO MICROORGANISMS
    • C12R2001/00—Microorganisms ; Processes using microorganisms
    • C12R2001/01—Bacteria or Actinomycetales ; using bacteria or Actinomycetales
    • C12R2001/35—Mycoplasma
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Y—ENZYMES
    • C12Y301/00—Hydrolases acting on ester bonds (3.1)
    • C12Y301/04—Phosphoric diester hydrolases (3.1.4)
    • C12Y301/04046—Glycerophosphodiester phosphodiesterase (3.1.4.46)
    • Y—GENERAL TAGGING OF NEW TECHNOLOGICAL DEVELOPMENTS; GENERAL TAGGING OF CROSS-SECTIONAL TECHNOLOGIES SPANNING OVER SEVERAL SECTIONS OF THE IPC; TECHNICAL SUBJECTS COVERED BY FORMER USPC CROSS-REFERENCE ART COLLECTIONS [XRACs] AND DIGESTS
    • Y02—TECHNOLOGIES OR APPLICATIONS FOR MITIGATION OR ADAPTATION AGAINST CLIMATE CHANGE
    • Y02E—REDUCTION OF GREENHOUSE GAS [GHG] EMISSIONS, RELATED TO ENERGY GENERATION, TRANSMISSION OR DISTRIBUTION
    • Y02E50/00—Technologies for the production of fuel of non-fossil origin
    • Y02E50/10—Biofuels, e.g. bio-diesel

Landscapes

  • Chemical & Material Sciences (AREA)
  • Organic Chemistry (AREA)
  • Health & Medical Sciences (AREA)
  • Life Sciences & Earth Sciences (AREA)
  • Engineering & Computer Science (AREA)
  • Genetics & Genomics (AREA)
  • Wood Science & Technology (AREA)
  • Zoology (AREA)
  • General Health & Medical Sciences (AREA)
  • Biochemistry (AREA)
  • Bioinformatics & Cheminformatics (AREA)
  • Biotechnology (AREA)
  • Medicinal Chemistry (AREA)
  • Microbiology (AREA)
  • General Engineering & Computer Science (AREA)
  • Molecular Biology (AREA)
  • Gastroenterology & Hepatology (AREA)
  • Biophysics (AREA)
  • Proteomics, Peptides & Aminoacids (AREA)
  • Chemical Kinetics & Catalysis (AREA)
  • General Chemical & Material Sciences (AREA)
  • Biomedical Technology (AREA)
  • Pulmonology (AREA)
  • Tropical Medicine & Parasitology (AREA)
  • Virology (AREA)
  • Micro-Organisms Or Cultivation Processes Thereof (AREA)
  • Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
  • Preparation Of Compounds By Using Micro-Organisms (AREA)
JP2008535578A 2005-10-12 2006-10-12 最小限の細菌ゲノム Pending JP2009511051A (ja)

Applications Claiming Priority (2)

Application Number Priority Date Filing Date Title
US72529505P 2005-10-12 2005-10-12
PCT/US2006/039047 WO2007047148A1 (en) 2005-10-12 2006-10-12 Minimal bacterial genome

Publications (2)

Publication Number Publication Date
JP2009511051A true JP2009511051A (ja) 2009-03-19
JP2009511051A5 JP2009511051A5 (https=) 2010-04-15

Family

ID=37704463

Family Applications (1)

Application Number Title Priority Date Filing Date
JP2008535578A Pending JP2009511051A (ja) 2005-10-12 2006-10-12 最小限の細菌ゲノム

Country Status (6)

Country Link
US (2) US20070122826A1 (https=)
EP (1) EP1951874A1 (https=)
JP (1) JP2009511051A (https=)
AU (1) AU2006303957A1 (https=)
CA (1) CA2625971A1 (https=)
WO (1) WO2007047148A1 (https=)

Families Citing this family (12)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
WO2007028147A2 (en) * 2005-09-01 2007-03-08 Philadelphia Health & Education Corporation D.B.A. Drexel University College Of Medicin Identification of a prostatic intraepithelial neoplasia (pin)-specific gene and protein (pin-1) useful as a diagnostic treatment for prostate cancer
JP2009524406A (ja) * 2005-10-13 2009-07-02 ビーシー キャンサー エージェンシー 合成生物学および代謝工学のためのモジュラー型ゲノム
CN101932725A (zh) 2007-10-08 2010-12-29 合成基因组股份有限公司 大核酸的装配
AU2009214435C1 (en) 2008-02-15 2014-07-17 Synthetic Genomics, Inc. Methods for in vitro joining and combinatorial assembly of nucleic acid molecules
US9259662B2 (en) 2008-02-22 2016-02-16 James Weifu Lee Photovoltaic panel-interfaced solar-greenhouse distillation systems
US10093552B2 (en) 2008-02-22 2018-10-09 James Weifu Lee Photovoltaic panel-interfaced solar-greenhouse distillation systems
PL2250276T3 (pl) 2008-02-23 2017-07-31 James Weifu Lee Organizmy zaprojektowane do fotobiologicznego wytwarzania butanolu z ditlenku węgla i wody
US8986963B2 (en) 2008-02-23 2015-03-24 James Weifu Lee Designer calvin-cycle-channeled production of butanol and related higher alcohols
WO2011127118A1 (en) * 2010-04-06 2011-10-13 Algenetix, Inc. Methods of producing oil in non-plant organisms
EP3433354B1 (en) * 2016-03-23 2023-12-27 Synthetic Genomics, Inc. Generation of synthetic genomes
CN106801081A (zh) * 2017-01-23 2017-06-06 嵊州市派特普科技开发有限公司 一种从米糠中提取活性蛋白的方法
CN117229374A (zh) * 2023-09-20 2023-12-15 自然资源部第三海洋研究所 一种细胞蛋白合成过程的促进系统及其应用

Citations (1)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
JP2003533981A (ja) * 2000-03-23 2003-11-18 イー・アイ・デュポン・ドウ・ヌムール・アンド・カンパニー 遺伝子機能の決定法

Family Cites Families (3)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US5482846A (en) * 1988-08-31 1996-01-09 University Of Florida Ethanol production in Gram-positive microbes
EP1066309A4 (en) * 1998-04-03 2005-10-19 Invitrogen Corp LIBRARIES OF EXPRESSIBLE GENESQUENCES
US6720139B1 (en) * 1999-01-27 2004-04-13 Elitra Pharmaceuticals, Inc. Genes identified as required for proliferation in Escherichia coli

Patent Citations (1)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
JP2003533981A (ja) * 2000-03-23 2003-11-18 イー・アイ・デュポン・ドウ・ヌムール・アンド・カンパニー 遺伝子機能の決定法

Non-Patent Citations (5)

* Cited by examiner, † Cited by third party
Title
JPN6012008628; Ｓｃｉｅｎｃｅ Ｖｏｌ．２８６, 1999, ｐ．２１６５-２１６９ *
JPN6012008629; Ｊ　Ｂａｃｔｅｒｉｏｌ． Ｖｏｌ．１８６, 2004, ｐ．７９２６-７９３５ *
JPN6012008630; Ｊ　Ｂａｃｔｅｒｉｏｌ． Ｖｏｌ．１８１, 1999, ｐ．４９６１-４９６８ *
JPN6012008631; Ｒｅｓ　Ｍｉｃｒｏｂｉｏｌ． Ｖｏｌ．１５１, 2000, ｐ．３１９-３２４ *
JPN6012008632; Ｐｒｏｃ　Ｎａｔｌ　Ａｃａｄ　Ｓｃｉ　Ｕ　Ｓ　Ａ． Ｖｏｌ．１０３, 200601, ｐ．４２５-４３０ *

Also Published As

Publication number Publication date
CA2625971A1 (en) 2007-04-26
US20070122826A1 (en) 2007-05-31
US20150344837A1 (en) 2015-12-03
AU2006303957A1 (en) 2007-04-26
WO2007047148A1 (en) 2007-04-26
EP1951874A1 (en) 2008-08-06

Similar Documents

Publication Publication Date Title
Lipscomb et al. Natural competence in the hyperthermophilic archaeon Pyrococcus furiosus facilitates genetic manipulation: construction of markerless deletions of genes encoding the two cytoplasmic hydrogenases
Wang et al. Recent progress in adaptive laboratory evolution of industrial microorganisms
Bergholz et al. Psychrobacter arcticus 273-4 uses resource efficiency and molecular motion adaptations for subzero temperature growth
Jakobsen et al. Upregulated transcription of plasmid and chromosomal ribulose monophosphate pathway genes is critical for methanol assimilation rate and methanol tolerance in the methylotrophic bacterium Bacillus methanolicus
Blaby et al. Experimental evolution of a facultative thermophile from a mesophilic ancestor
CN102421890B (zh) 用于生产乙醇的重组细菌及其应用
Wang et al. Improvement of stress tolerance and riboflavin production of Bacillus subtilis by introduction of heat shock proteins from thermophilic bacillus strains
Woodruff et al. Engineering improved ethanol production in Escherichia coli with a genome-wide approach
Liu et al. Directed combinatorial mutagenesis of Escherichia coli for complex phenotype engineering
JP2002543834A (ja) 微生物の支配された進化
Pritchett et al. Genetic, physiological and biochemical characterization of multiple methanol methyltransferase isozymes in Methanosarcina acetivorans C2A
JP7715636B2 (ja) 第二世代の糖から化学物質を生成するためのキシロースおよびグルコースの同時消費のための代謝工学
JP2009511051A (ja) 最小限の細菌ゲノム
Kim et al. Characterization of an Entner–Doudoroff pathway-activated Escherichia coli
Lau et al. Development of a suite of tools for genome editing in Parageobacillus thermoglucosidasius and their use to identify the potential of a native plasmid in the generation of stable engineered strains
Tian et al. Development of base editors for simultaneously editing multiple loci in Lactococcus lactis
Groom et al. Promiscuous plasmid replication in thermophiles: use of a novel hyperthermophilic replicon for genetic manipulation of Clostridium thermocellum at its optimum growth temperature
Dai et al. Exploiting the type IB CRISPR genome editing system in Thermoanaerobacterium aotearoense SCUT27 and engineering the strain for enhanced ethanol production
Yan et al. Halomonas piezotolerans sp. nov., a multiple-stress-tolerant bacterium isolated from a deep-sea sediment sample of the New Britain Trench
Hocq et al. A megatransposon drives the adaptation of Thermoanaerobacter kivui to carbon monoxide
Woo et al. Generation of a vibrio-based platform for efficient conversion of raffinose through adaptive laboratory evolution on a solid medium
Han et al. Development of a pyrE-based selective system for Thermotoga sp. strain RQ7
Calvanese et al. Development of high-copy number plasmids in Pseudoalteromonas haloplanktis TAC125
KR20160111947A (ko) 재조합 미생물의 생산 방법
Lewis et al. A mutant (‘lab strain’) of the hyperthermophilic archaeon Pyrococcus furiosus, lacking flagella, has unusual growth physiology

Legal Events

Date Code Title Description
A621 Written request for application examination

Free format text: JAPANESE INTERMEDIATE CODE: A621

Effective date: 20091008

A711 Notification of change in applicant

Free format text: JAPANESE INTERMEDIATE CODE: A711

Effective date: 20091225

A521 Request for written amendment filed

Free format text: JAPANESE INTERMEDIATE CODE: A821

Effective date: 20091225

A521 Request for written amendment filed

Free format text: JAPANESE INTERMEDIATE CODE: A523

Effective date: 20100301

A131 Notification of reasons for refusal

Free format text: JAPANESE INTERMEDIATE CODE: A131

Effective date: 20120220

A601 Written request for extension of time

Free format text: JAPANESE INTERMEDIATE CODE: A601

Effective date: 20120517

A602 Written permission of extension of time

Free format text: JAPANESE INTERMEDIATE CODE: A602

Effective date: 20120524

A601 Written request for extension of time

Free format text: JAPANESE INTERMEDIATE CODE: A601

Effective date: 20120618

A602 Written permission of extension of time

Free format text: JAPANESE INTERMEDIATE CODE: A602

Effective date: 20120625

A601 Written request for extension of time

Free format text: JAPANESE INTERMEDIATE CODE: A601

Effective date: 20120719

A602 Written permission of extension of time

Free format text: JAPANESE INTERMEDIATE CODE: A602

Effective date: 20120726

A02 Decision of refusal

Free format text: JAPANESE INTERMEDIATE CODE: A02

Effective date: 20121031