IL251742A0 - Caller changes - Google Patents
Caller changesInfo
- Publication number
- IL251742A0 IL251742A0 IL251742A IL25174217A IL251742A0 IL 251742 A0 IL251742 A0 IL 251742A0 IL 251742 A IL251742 A IL 251742A IL 25174217 A IL25174217 A IL 25174217A IL 251742 A0 IL251742 A0 IL 251742A0
- Authority
- IL
- Israel
- Prior art keywords
- variant caller
- caller
- variant
- Prior art date
Links
Classifications
-
- G—PHYSICS
- G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
- G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
- G16B30/00—ICT specially adapted for sequence analysis involving nucleotides or amino acids
- G16B30/10—Sequence alignment; Homology search
-
- G—PHYSICS
- G06—COMPUTING OR CALCULATING; COUNTING
- G06N—COMPUTING ARRANGEMENTS BASED ON SPECIFIC COMPUTATIONAL MODELS
- G06N3/00—Computing arrangements based on biological models
- G06N3/12—Computing arrangements based on biological models using genetic models
- G06N3/126—Evolutionary algorithms, e.g. genetic algorithms or genetic programming
-
- G—PHYSICS
- G06—COMPUTING OR CALCULATING; COUNTING
- G06N—COMPUTING ARRANGEMENTS BASED ON SPECIFIC COMPUTATIONAL MODELS
- G06N7/00—Computing arrangements based on specific mathematical models
- G06N7/01—Probabilistic graphical models, e.g. probabilistic networks
-
- G—PHYSICS
- G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
- G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
- G16B20/00—ICT specially adapted for functional genomics or proteomics, e.g. genotype-phenotype associations
-
- G—PHYSICS
- G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
- G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
- G16B20/00—ICT specially adapted for functional genomics or proteomics, e.g. genotype-phenotype associations
- G16B20/20—Allele or variant detection, e.g. single nucleotide polymorphism [SNP] detection
-
- G—PHYSICS
- G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
- G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
- G16B20/00—ICT specially adapted for functional genomics or proteomics, e.g. genotype-phenotype associations
- G16B20/40—Population genetics; Linkage disequilibrium
-
- G—PHYSICS
- G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
- G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
- G16B30/00—ICT specially adapted for sequence analysis involving nucleotides or amino acids
Landscapes
- Physics & Mathematics (AREA)
- Life Sciences & Earth Sciences (AREA)
- Engineering & Computer Science (AREA)
- Health & Medical Sciences (AREA)
- Bioinformatics & Cheminformatics (AREA)
- Theoretical Computer Science (AREA)
- Biophysics (AREA)
- Bioinformatics & Computational Biology (AREA)
- Evolutionary Biology (AREA)
- General Health & Medical Sciences (AREA)
- Spectroscopy & Molecular Physics (AREA)
- Biotechnology (AREA)
- Proteomics, Peptides & Aminoacids (AREA)
- Analytical Chemistry (AREA)
- Chemical & Material Sciences (AREA)
- Medical Informatics (AREA)
- Genetics & Genomics (AREA)
- Molecular Biology (AREA)
- Physiology (AREA)
- General Physics & Mathematics (AREA)
- Artificial Intelligence (AREA)
- Mathematical Physics (AREA)
- Evolutionary Computation (AREA)
- Data Mining & Analysis (AREA)
- Computing Systems (AREA)
- General Engineering & Computer Science (AREA)
- Software Systems (AREA)
- Ecology (AREA)
- Computational Linguistics (AREA)
- Biomedical Technology (AREA)
- Probability & Statistics with Applications (AREA)
- Computational Mathematics (AREA)
- Mathematical Analysis (AREA)
- Mathematical Optimization (AREA)
- Pure & Applied Mathematics (AREA)
- Algebra (AREA)
- Information Retrieval, Db Structures And Fs Structures Therefor (AREA)
- Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
Applications Claiming Priority (2)
| Application Number | Priority Date | Filing Date | Title |
|---|---|---|---|
| US201462064717P | 2014-10-16 | 2014-10-16 | |
| PCT/US2015/055807 WO2016061396A1 (en) | 2014-10-16 | 2015-10-15 | Variant caller |
Publications (1)
| Publication Number | Publication Date |
|---|---|
| IL251742A0 true IL251742A0 (en) | 2017-06-29 |
Family
ID=55747365
Family Applications (1)
| Application Number | Title | Priority Date | Filing Date |
|---|---|---|---|
| IL251742A IL251742A0 (en) | 2014-10-16 | 2017-04-14 | Caller changes |
Country Status (8)
| Country | Link |
|---|---|
| US (1) | US20160140289A1 (enExample) |
| EP (1) | EP3207369A4 (enExample) |
| JP (1) | JP2018501539A (enExample) |
| CN (1) | CN107076729A (enExample) |
| AU (1) | AU2015332389A1 (enExample) |
| CA (1) | CA2963425A1 (enExample) |
| IL (1) | IL251742A0 (enExample) |
| WO (1) | WO2016061396A1 (enExample) |
Families Citing this family (16)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| US10395759B2 (en) | 2015-05-18 | 2019-08-27 | Regeneron Pharmaceuticals, Inc. | Methods and systems for copy number variant detection |
| US20170270245A1 (en) | 2016-01-11 | 2017-09-21 | Edico Genome, Corp. | Bioinformatics systems, apparatuses, and methods for performing secondary and/or tertiary processing |
| CN109074426B (zh) | 2016-02-12 | 2022-07-26 | 瑞泽恩制药公司 | 用于检测异常核型的方法和系统 |
| EP4362030A3 (en) * | 2016-06-07 | 2024-07-17 | Illumina, Inc. | Bioinformatics systems, apparatuses, and methods for performing secondary and/or tertiary processing |
| US10600499B2 (en) | 2016-07-13 | 2020-03-24 | Seven Bridges Genomics Inc. | Systems and methods for reconciling variants in sequence data relative to reference sequence data |
| CA3044231A1 (en) * | 2016-11-16 | 2018-05-24 | Illumina, Inc. | Validation methods and systems for sequence variant calls |
| US11821027B2 (en) | 2017-01-10 | 2023-11-21 | Juno Therapeutics, Inc. | Epigenetic analysis of cell therapy and related methods |
| US20190024161A1 (en) * | 2017-07-21 | 2019-01-24 | Helix OpCo, LLC | Genomic services platform supporting multiple application providers |
| US11861491B2 (en) | 2017-10-16 | 2024-01-02 | Illumina, Inc. | Deep learning-based pathogenicity classifier for promoter single nucleotide variants (pSNVs) |
| MX2019014690A (es) | 2017-10-16 | 2020-02-07 | Illumina Inc | Tecnicas basadas en aprendizaje profundo para el entrenamiento de redes neuronales convolucionales profundas. |
| AU2019205496B2 (en) | 2018-01-08 | 2021-08-19 | Illumina, Inc. | High-throughput sequencing with semiconductor-based detection |
| WO2019136376A1 (en) | 2018-01-08 | 2019-07-11 | Illumina, Inc. | High-throughput sequencing with semiconductor-based detection |
| CN109949866B (zh) * | 2018-06-22 | 2021-02-02 | 深圳市达仁基因科技有限公司 | 病原体操作组的检测方法、装置、计算机设备和存储介质 |
| US11361194B2 (en) | 2020-10-27 | 2022-06-14 | Illumina, Inc. | Systems and methods for per-cluster intensity correction and base calling |
| US11538555B1 (en) | 2021-10-06 | 2022-12-27 | Illumina, Inc. | Protein structure-based protein language models |
| US12431218B2 (en) | 2022-03-08 | 2025-09-30 | Illumina, Inc. | Multi-pass software-accelerated genomic read mapping engine |
Family Cites Families (9)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| AU2001253720A1 (en) * | 2000-04-18 | 2001-10-30 | Genaissance Pharmaceuticals, Inc. | Method and system for determining haplotypes from a collection of polymorphisms |
| US20030211501A1 (en) * | 2001-04-18 | 2003-11-13 | Stephens J. Claiborne | Method and system for determining haplotypes from a collection of polymorphisms |
| US20040265816A1 (en) * | 2001-07-05 | 2004-12-30 | Eiichi Tanaka | Method of judging risk of side effects of remedys for rheumatoid arthritis (ra) |
| US20050209787A1 (en) * | 2003-12-12 | 2005-09-22 | Waggener Thomas B | Sequencing data analysis |
| DK2511843T3 (en) * | 2009-04-29 | 2017-03-27 | Complete Genomics Inc | METHOD AND SYSTEM FOR DETERMINING VARIATIONS IN A SAMPLE POLYNUCLEOTIDE SEQUENCE IN TERMS OF A REFERENCE POLYNUCLEOTIDE SEQUENCE |
| WO2011139797A2 (en) * | 2010-04-27 | 2011-11-10 | Spiral Genetics Inc. | Method and system for analysis and error correction of biological sequences and inference of relationship for multiple samples |
| CA2835453A1 (en) * | 2011-05-09 | 2012-11-15 | Minerva Biotechnologies Corporation | Genetically engineered growth factor variants |
| WO2013028739A1 (en) * | 2011-08-25 | 2013-02-28 | Complete Genomics | Phasing of heterozygous loci to determine genomic haplotypes |
| CN103955629A (zh) * | 2014-02-18 | 2014-07-30 | 吉林大学 | 基于模糊k均值的宏基因组片段聚类方法 |
-
2015
- 2015-10-15 US US14/884,656 patent/US20160140289A1/en not_active Abandoned
- 2015-10-15 EP EP15851252.5A patent/EP3207369A4/en not_active Withdrawn
- 2015-10-15 AU AU2015332389A patent/AU2015332389A1/en not_active Abandoned
- 2015-10-15 CA CA2963425A patent/CA2963425A1/en not_active Abandoned
- 2015-10-15 WO PCT/US2015/055807 patent/WO2016061396A1/en not_active Ceased
- 2015-10-15 JP JP2017521153A patent/JP2018501539A/ja active Pending
- 2015-10-15 CN CN201580055934.8A patent/CN107076729A/zh active Pending
-
2017
- 2017-04-14 IL IL251742A patent/IL251742A0/en unknown
Also Published As
| Publication number | Publication date |
|---|---|
| US20160140289A1 (en) | 2016-05-19 |
| EP3207369A1 (en) | 2017-08-23 |
| CN107076729A (zh) | 2017-08-18 |
| CA2963425A1 (en) | 2016-04-21 |
| JP2018501539A (ja) | 2018-01-18 |
| WO2016061396A1 (en) | 2016-04-21 |
| EP3207369A4 (en) | 2018-06-13 |
| AU2015332389A1 (en) | 2017-04-20 |
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