IE921686A1 - Recombinant avipox virus, the culture of cells infected with¹this virus and vaccines for poultry derived from this virus - Google Patents

Recombinant avipox virus, the culture of cells infected with¹this virus and vaccines for poultry derived from this virus

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IE921686A1
IE921686A1 IE168692A IE921686A IE921686A1 IE 921686 A1 IE921686 A1 IE 921686A1 IE 168692 A IE168692 A IE 168692A IE 921686 A IE921686 A IE 921686A IE 921686 A1 IE921686 A1 IE 921686A1
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virus
recombinant
protein
sequence
ibdv
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IE168692A
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George Thiry
Didier Colau
Catherine De Wannemaeker
Daneil Malarme
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Solvay
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    • C12NMICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
    • C12N15/00Mutation or genetic engineering; DNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purification; Use of hosts therefor
    • C12N15/09Recombinant DNA-technology
    • C12N15/63Introduction of foreign genetic material using vectors; Vectors; Use of hosts therefor; Regulation of expression
    • C12N15/79Vectors or expression systems specially adapted for eukaryotic hosts
    • C12N15/85Vectors or expression systems specially adapted for eukaryotic hosts for animal cells
    • C12N15/86Viral vectors
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    • C12N7/00Viruses; Bacteriophages; Compositions thereof; Preparation or purification thereof
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    • C07ORGANIC CHEMISTRY
    • C07KPEPTIDES
    • C07K14/00Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof
    • C07K14/005Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof from viruses
    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07KPEPTIDES
    • C07K14/00Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof
    • C07K14/435Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof from animals; from humans
    • C07K14/44Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof from animals; from humans from protozoa
    • C07K14/455Eimeria
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61KPREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
    • A61K39/00Medicinal preparations containing antigens or antibodies
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    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
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    • C12N2710/00MICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA dsDNA viruses
    • C12N2710/00011Details
    • C12N2710/24011Poxviridae
    • C12N2710/24041Use of virus, viral particle or viral elements as a vector
    • C12N2710/24043Use of virus, viral particle or viral elements as a vector viral genome or elements thereof as genetic vector
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    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
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    • C12N2770/00MICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA ssRNA viruses positive-sense
    • C12N2770/00011Details
    • C12N2770/20011Coronaviridae
    • C12N2770/20022New viral proteins or individual genes, new structural or functional aspects of known viral proteins or genes

Abstract

The invention relates to a recombinant Avipox virus derived from an attenuated Avipox virus strain and containing, in a non-essential portion of its genome, at least one DNA sequence encoding all or part of a protein heterologous to the Avipox virus, the non-essential portion of the genome being made up of an intergenic region of TIRs (terminal inverted repeat). The invention also relates to the culture of cells infected with this virus, to vaccines containing this recombinant Avipox virus and to the use of this virus as a vector capable of expressing all or part of a protein heterologous to the virus.

Description

Recombinant Avipox virus, the culture of cells infected by this virus and vaccines for poultry derived from this virus The invention relates to recombinant viruses 5 derived from the Avipox virus and in particular from the virus responsible for fowl variola which is commonly called Fowlpox. The invention also relates to a method of production of these viruses by cell culture, to the use of these viruses for the production of vaccines and to vaccines containing these viruses. The invention also relates to the transfer sequences for the insertion of this recombinant virus into the genome, as well as to the plasmids carrying these sequences.
The virus responsible for fowl variola, or Fowlpox virus (FPV), belong to the Avipox genus of the Poxviridae family.
The Fowlpox virus has the characteristics typical of Pox viruses. These are large-sized viruses whose genome is a linear double-stranded DNA of about 300 kb and whose single-stranded ends are covalently linked. About 20 kb of the genome have been sequenced, especially the Terminal inverted Repeat sequence (TIR) (Campbell et al., 1989; Tomley et al., 1988). The terminal inverted repeats are two identical long sequences which are present at each end of the genome, in the inverse orientation.
The vaccinia virus or Vaccinia was the first Pox developed as live recombinant virus capable of expressing foreign proteins. The list of proteins expressed is very long. In particular, the expression of many foreign antigens has made it possible to obtain immunisations against various diseases.
The use of the Fowlpox virus as a vector for the expression of heterologous proteins for the purpose of preparing a vaccine, that is to say the use of a recombinant virus having integrated a DNA sequence encoding a heterologous protein inside a noncoding intergenic region of its genome, has been proposed in European Patent - 2 Application 0,314,569; this region is a short sequence of 32 nucleotides situated between the Open Reading Frames (ORF) ORF 7 and ORF 9 and has been genetically arranged into a nonessential insertion site. In such short intergenic regions, there is a high risk of the insertion separating a transcription signal from its gene and introducing, as a result, a mutation which inactivates this gene. This can be shown to be the case: indeed this 32-nucleotide sequence appears to be an essential region since it has had to be extended to 55 nucleotides in order to avoid possible overlapping between the promoter of ORF 9 and the 3' coding sequence of ORF 7. In the case of the region which separates ORF 7 from ORF 9, the insertion into the natural sequence is, moreover, unstable (Spehner et al., 1990), and it is essential to arrange it. Furthermore, the proposed manner of arranging a short intergenic region cannot be generalised.
Moreover, the construction of recombinant Fowlpox virus and other recombinant fowl pox viruses charac20 terised by the insertion of foreign DNA into the thymidine kinase gene, has also been proposed in International Patent Application W088/02022. This insertion creates a mutation in the gene which could attenuate the infectiousness of the virus. This presents a risk of an excessive attenuation of the strain and a reduced immunogenicity of the vaccine which is derived from the recombinant virus.
Moreover, the use of a recombinant Fowlpox virus as vector for the expression of heterologous proteins has also been proposed in European Patent Application 0,353,851. The insertion of a foreign gene into the viral genome is carried out inside the open reading frames (ORF) situated inside the terminal inverted repeats (TIR) . The insertion of one or more foreign genes into open reading frames presents the risk of causing the mutation of a gene whose function is not known.
The present invention provides other regions for the insertion of one or more foreign genes into the viral - 3 genome, which no longer has the disadvantages of the aforementioned insertion regions.
In this regard, the present invention relates to a recombinant Avipox virus derived from an attenuated strain of Avipox virus and containing, in a nonessential part of its genome, at least one DNA sequence encoding all or part of a protein which is heterologous with respect to the Avipox virus as well as the elements capable of ensuring the expression of this protein inside a cell infected by the said recombinant virus, the nonessential part of the genome being composed of a noncoding intergenic region of the Avipox virus, a region which is situated between two open reading frames including their expression signals.
A nonessential part of the Avipox virus genome is understood to mean a region which may be modified without affecting the functions involved in the development of the virus in vitro and in vivo. A noncoding intergenic region of the genome, that is to say situated between two ORFs, including their expression signals, is chosen as the nonessential part.
The intergenic regions according to the invention are large, such that the risk of an insertion separating the signals for the transcription of their respective genes is minimal and also such that it is unnecessary to arrange them. Moreover, the sequences of these intergenic regions are noncoding and there is therefore no risk of mutation inside an ORF. A large region is understood to mean a region having a sequence of more than 60 nucleotides. Generally, a region having a sequence of more than 100 nucleotides is chosen. Preferably, a region having a sequence of more than 200 nucleotides is chosen. In a particularly preferred manner, a region having a sequence of more than 400 nucleotides is chosen.
Moreover, an intergenic region, in which at least one DNA sequence is cloned, situated inside one of the two TIR regions of the Avipox virus, is generally chosen. Normally, at least one DNA sequence is cloned into at - 4 IE 921686 intergenic intergenic least one of the two TIR regions of the Avipox virus. Preferably, at least one DNA sequence is cloned into the two TIR regions of the virus. Still more preferably, the intergenic region, termed 01 region, and/or the region, termed β2 region, is chosen; the region, termed /31 region, being situated between the nucleotides 1675 and 2165 and the intergenic region, termed β2 region, being situated between the nucleotides 2672 and 3605, taking as starting nucleotide 10 the BamHI restriction site present inside the TIRs. This BamHI restriction site which is chosen here for positioning the intergenic regions, is the first nucleotide of the sequence published by Tomley et al., 1988. These regions according to the invention may also 15 be defined as follows: the intergenic region, termed βΐ region, is situated between the open reading frames ORF 1 and ORF 2, the open reading frame ORF 1 being situated between the nucleotides 416 - the nucleotide A of ATG and 1674 - the 3rd nucleotide of the stop codon - and the 20 open reading frame ORF 2 being situated between the nucleotides 2166 - the nucleotide A of ATG - and 2671 the 3rd nucleotide of the stop codon -, taking as starting nucleotide the BamHI restriction site inside the TIRs, and the intergenic region, termed /32 region, is 25 situated between the open reading frames ORF 2 and ORF 3, the open reading frame ORF 2 being situated between the nucleotides 2166 - the nucleotide A of ATG - and 2671 the 3rd nucleotide of the stop codon - and the open reading frame ORF 3 being situated between the 30 nucleotides 3606 - the 3rd nucleotide of the stop codon and 4055 - the nucleotide A of ATG -, taking as starting nucleotide the BamHI restriction site inside the TIRs. In a particularly preferred manner, there is chosen, inside the βΐ region, a part situated between the nucleotides 35 1775 and 2065 and, inside the /32 region, a part situated between the nucleotides 2772 and 3505. Good results have been obtained by cloning at the level of the nucleotide 1842, termed Bl insertion site, situated inside the /31 - 5 region, and/or at the level of the nucleotide 3062, termed B2 insertion site, inside the /32 region.
Good results were obtained when at least one DNA sequence is cloned into the β2 region, inside one of the two TIR regions of the Avipox virus. Good results were also obtained when a DNA sequence is cloned into the βΐ region, inside each of the two TIRs. This represents another advantage of the invention since it is possible to obtain two copies of the heterologous DNA sequence per genome.
Recombinant Avipox virus derived from an attenuated Avipox virus strain is understood to mean a virus belonging to the Avipox genus, which is attenuated and whose genome contains a heterologous sequence accompanied by expression signals. Generally, a virus of the Avipox genus such as Fowlpox, Pigeonpox or Canarypox, is used as virus. Normally, Fowlpox is used as virus. Preferably, a vaccinal strain of the chicken variola virus or Fowlpox, such as the vaccine produced and marke ed by the company SOLVAY under the trademark POXINE or the vaccine produced and marketed by the company SOLVAY under the trademarks CHICK-N-POX, POULVAC CHICKN-POX, CHICK-N-POX TC, POULVAC CHICK-N-POX TC, POULVAC POXINE and POULVAC P, is used as Fowlpox virus. In a particularly preferred manner, the vaccine marketed by SOLVAY under the trademarks CHICK-N-POX, POULVAC CHICKN-POX, CHICK-N-POX TC, POULVAC CHICK-N-POX TC, POULVAC POXINE and POULVAC P, abbreviated CNP, is used as Fowlpox virus.
The attenuation is obtained by successive passages on embryo, or by passages on cell cultures if the virus has been adapted to cultured cells.
Elements capable of ensuring the expression of the gene which encodes the heterologous protein in a cell infected by the said recombinant virus are understood to mean the signals of genetic expression, which are recognised by the virus, especially the promoter and the terminator, elements which are known to a person skilled - 6 in the art as described especially by Moss, 1990 for example. Generally, a Pox promoter is used. Normally, a Vaccinia or Fowlpox promoter is used. Preferably, the promoter Pll and the promoter P7.5 from Vaccinia, as described by Venkatesan et al., 1981, Cochran et al., 1985 and Bertholet et al., 1985, are used.
At least one DNA sequence encoding all or part of a protein which is heterologous with respect to the Avipox virus is understood to mean any DNA fragment extracted from a genome, or a cDNA copy or alternatively a synthetic DNA, accompanied by the expression signals, and whose sequence encodes all or part of a protein which is foreign with respect to Avipox.
Figures 1 to 11 were prepared in order to allow a better understanding of the invention.
Figure 1 represents the construction of a recombinant Avipox, adapted from Mackett et al., 1984. Cells infected (I: infection) with the Fowlpox virus (FPV) are transfected (T: transfection) with a transfer plasmid.
This plasmid (P) carries a promoter (Pr) which is orientated so as to permit expression of an adjacent heterologous gene (g) which is flanked on either side by viral DNA sequences. The homologous recombination (R) takes place inside the cytoplasm of the cell (C) between the sequences flanking the gene and the sequences present in the viral genome. This results in the insertion of the heterologous gene into the viral genome. This genome may be packaged and may produce recombinant viral particles (VR). N represents the nucleus of the cell (C).
Figure 2 schematically represents the ends of the Fowlpox genome with the right TIR (TIR-R) and the left TIR (TIR-L) symbolised by rectangles and with the unique sequence symbolised by a line. The dashes symbolise the central region of the genome. The EcoRI restriction fragment of the TIR-L is 6.2 kb while that of TIR-R is 9.0 kb. This schematic representation shows that these two fragments have a common sequence and a unique sequence. A BamHI site situated downstream of EcoRI inside the TIRs is indicated.
Figure 3 represents a restriction map of the plasmid pTIRBl (PTIRBl) for some unique sites and the position of the ORFs. The unique BamHl site is used for cloning the heterologous genes. ori (ORI): origin of replication of the plasmid inside Escherichia coli (E. coli); Ap: gene for resistance to ampicillin; ORF 1 to ORF 6: Fowlpox open reading frames.
Figure 4 represents a figure which is similar to 10 Figure 3, but for the plasmid pTIRB2 (PTIRB2).
Figure 5 represents a restriction map of the plasmid pllLac (PllLAC). This plasmid carries the E. coli LacZ gene under the control of the Vaccinia promoter Pll. Pll: Vaccinia promoter Pll; LACZ: 0-galactosidase15 encoding gene; ori: origin of replication in E. coli; strand +: strand packaged inside the phage M13; Ap: gene for resistance to ampicillin.
Figure 6 represents an example of a vector for transferring the LacZ gene into the TIRs. This vector is pTIRBlP75Lac (PTIRB1P75LAC). The cassette P7.5-LacZ is cloned into the BamHl site of pTIRBl in a clockwise direction. P7.5: Vaccinia promoter P7.5.
Figure 7 is a schematic representation of the inserts of the LacZ gene (represented by a shaded rec25 tangle) inside the CNP genome. The cassettes P7.5-LacZ and Pll-LacZ are inserted into the terminal regions (TIR), in either orientation. The right TIR region is not represented. The arrows indicate the direction of transcription of the genes which are represented by rec30 tangles. The scale is not accurate.
Figure 8 represents the segment A from IBDV, the position of the primers and the various fragments obtained by reverse transcription and by amplification of the RNA of the segment A from the Edgar strain.
A : organisation of the ORFs. p : primers used for carrying out the amplification of the segment A. - β >,< : orientation of the primers relative to the coding sequence of the segment A. fgt PCR : fragments generated by amplification of the RNA of the segment A. pb : base pairs.
Figure 9 (Figure 9a to Figure 9e) represents the nucleotide sequence of the amplified DNA corresponding to the RNA of the segment A from the Edgar strain and the translation of the ORFs 1, 2 and 3 into amino acids.
Primers 0, 1, lb, 2, 3, 4, 5 and 6: primers used for generating, by reverse transcription and by amplification, the DNA fragments corresponding to the segment A from the Edgar strain.
Figure 10 represents the schematic representation for the reconstruction of the DNA segment corresponding to the segment A from the Edgar strain using fragments obtained by reverse transcription and by amplification. *: site-directed mutagenesis.
Figure 11 represents a restriction map of the plasmid pTIR75ElLAC (PTIR75E1LAC).
The portion of the plasmid represented by a thick line corresponds to the sequences which are homologous with respect to the FPV genome, ori (ORI): origin of replication of the plasmid inside E. coli; Ap: gene for resistance to ampicillin; P7.5: Vaccinia promoter P7.5; ORF1-IBDV: ORF 1 of the segment A from the Edgar strain; Pll: Vaccinia promoter Pll; LACZ: ^-galactosidaseencoding gene; pb: base pairs; ORF 1 to ORF 6: open reading frames of Fowlpox.
Figure 12 represents the characterisation, by the ELISA test, of the IBDV proteins expressed in the FPV/IBDV recombinants. The characterisation was carried out as follows: 50 pi of cellular suspensions and twofold serial dilutions of these suspensions were deposited per well. After incubation of the second anti-IBDV antibody (monoclonal anti-VP3 or anti-VP2), the signal was amplified by means of the mouse anti-IgG system labelled with biotin + streptavidin conjugated to - 9 IE 921686 alkaline phosphatase.
Figure 12 A corresponds to the detection by means of the anti-VP3 monoclonal antibody. Figure 12 B corresponds to the detection by means of the anti-VP2 monoclonal antibody.
In these figures, the x-axis represents the 2-fold serial dilutions of the cellular extracts in logarithmic units and the y-axis represents the ratio of the absorbances measured at 690 nm and 405 nm.
Figure 13 represents the characterisation by Western blot analysis of the IBDV proteins expressed in the FPV/IBDV recombinants. This characterisation was carried out as follows: the cellular suspensions are centrifuged at 3,000 g and the supernatants obtained are ultracentrifuged at 185,000 g; the pellets resulting from the two centrifugations are pooled and resuspended in PBS buffer (Phosphate Buffered Saline, Gibco).
A deposit of 20 to 40 μφ of proteins for the FPV/IBDV recombinants and 5 μq for the IBDV-infected cells (positive control) is deposited per well, on SDS-acrylamide gel. After transferring onto a membrane, the IBDV proteins are detected by means of a polyclonal serum which recognises all the IBDV proteins, for Figure 13 A, or by means of an anti-VP3 monoclonal antibody, for Figure 13 B. Amplification of the signal is carried out by means of the anti-IgG system labelled with biotin and the conjugate streptavidin-alkaline phosphatase. PM: molecular weight marker proteins.
The method used for implementing the invention is schematically represented in Figure 1 (modified according to Mackett et al., 1984). Cells infected with Avipox or Fowlpox are transfected with a transfer plasmid. This plasmid carries a promoter which is properly orientated so as to permit the expression of an adjacent heterolo35 gous gene flanked on either side by viral DNA sequences.
The homologous recombination takes place inside the cytoplasm of the cell between the sequences flanking the gene and the sequences present in the viral genome. The - 10 IE 921686 insertion of a heterologous gene into the viral genome results therefrom. This genome may be packaged and may produce recombinant viral particles. This technique of insertion through the infection of cells with Pox followed by a transfer through a plasmid was developed for Vaccinia and is commonly used in many laboratories for the construction of recombinant Pox viruses (Mackett et al., 1985).
The method according to the invention normally comprises the following stages: the first stage consists in constructing the transfer plasmids which permit screening, the second stage consists in cloning the genes encoding the heterologous antigens into the transfer plasmids, the third stage consists in constructing the recombinant Avipox viruses, and the fourth stage consists in carrying out vaccination tests using the recombinant viruses.
Preferably, the method comprises the following stages: a. Construction of the transfer plasmids which permit screening: Cloning of TIR-carrying fragments.
- Insertion of cloning site into the TIRs.
Cloning of the Vaccinia promoters Pll and P7.5. Construction of a cassette carrying the LacZ gene and its cloning downstream of Pll or P7.5. Cloning of the elements PllLacZ or P7.5LacZ into TIR-transfer plasmids. b. Construction of recombinant CNP viruses (LacZ gene for carrying out a preliminary test): Transfection of the QT35 cells with the CNP virus and a transfer plasmid.
Screening and then purification of the recombinants by virtue of the expression of the LacZ gene. - 11 Analysis of the genomes of the recombinants and of the expression of LacZ. c. Vaccination test: Vaccination of chicks with recombinant viruses 5 and protection given by the LacZ recombinant virus against fowl variola. d. Cloning of genes encoding heterologous antigens (heterologous protein) into the transfer plasmids: Cloning of the genes encoding heterologous antigens downstream of Pll or P7.5.
Cloning of the cassettes Pll-antigen and P7.5-LacZ or P7.5-antigen and Pll-LacZ into the plasmids TIR. e. Construction of recombinant CNP viruses: - Transfection of QT35 cells with the CNP virus and a transfer plasmid.
Screening and subsequent purification of the recombinant viruses by virtue of the expression of the LacZ gene.
- Analysis of the expression of the antigen in cell cultures and analysis of the genome of the recombinant viruses . f. Vaccination: Vaccination with the recombinant CNP viruses.
- Evaluation of the level of protection given to CNP by virtue of the expression of the heterologous antigen.
The invention also relates to transfer sequences which enable the heterologous DNA to be inserted into the genome of the Avipox virus as defined above and especially at the sites Bl or B2. The invention also relates to the plasmids which carry these sequences. Transfer plasmid is understood to mean a plasmid which contains a heterologous gene under the influence of a promoter which is recognised by Avipox, flanked on either side by the sequences situated on either side of the site Bl or of the site B2. The length of these sequences which are homologous with respect to FPV and which flank the - 12 heterologous gene, should be sufficiently long so as to permit recombination on the left and on the right of the heterologous gene. Generally, sequences of at least 1 kb are chosen. Good results are obtained for Bl flanked by a sequence of about 1850 nucleotides upstream and 4321 nucleotides downstream, and for B2, about 3070 nucleotides upstream and 3100 nucleotides downstream. The transfer plasmids play a role in the method for isolating recombinant Avipox viruses, a transfection of the quail cells QT35, previously infected with the Avipox virus, being called into play in the method.
The invention also relates to a culture of eucaryotic cells which are infected with a recombinant Avipox virus derived from an attenuated Avipox virus strain and comprising, in a nonessential part of its genome, at least one DNA sequence encoding all or part of a protein which is heterologous with respect to the Avipox virus, as well as the elements capable of ensuring expression of this protein in a cell infected with the said recombinant virus, the nonessential part being composed of a noncoding intergenic region of the Avipox virus situated between two ORFs, including their expression signals.
Preferably, a culture of fowl cells is used. Good results have been obtained with a culture of quail cells. Excellent results have been obtained with the culture of the quail cells QT35, as described by Cho (1981).
The recombinant Avipox virus according to the invention is developed as vectors which are capable of expressing all or part of the heterologous protein. The present invention therefore also relates to the use of the virus according to the invention, as a vector which is capable of expressing all or part of a heterologous protein such as an antigen in particular.
The invention also relates to a vaccine containing a recombinant Avipox virus derived from an attenuated Avipox virus strain and containing, in a nonessential part of its genome, at least one DNA sequence encoding - 13 all or part of a protein which is heterologous with respect to the Avipox virus, as well as the elements capable of ensuring the expression of this protein in a cell infected with the said recombinant virus, the non5 essential part of the genome being composed of a noncoding intergenic region of the Avipox virus situated between two ORFs, including their expression signals.
Heterologous protein is understood to mean any protein or part of a protein which is foreign with respect to the Avipox virus, or a natural or modified protein. Generally, this protein may be an antigen enabling a vaccine to be developed against a pathogenic organism. Normally, the antigens are in particular proteins of agents which are infectious to fowls, viruses, bacteria, chlamydia, mycoplasmas, protozoa, fungi and worms.
They are in particular the Adenoviridae. such as the virus responsible for aplastic anaemia (AA) and for the egg drop syndrome (EDS), the Birnaviridae, such as the infectious bursal disease virus (IBDV), the Coronaviridae, such as the infectious bronchitis virus (IBV), the Herpesviridae, such as the Marek's disease virus (MDV) and the virus responsible for infectious laryngotrachitis (ILTV), the Orthomvxoviridae. such as the virus responsible for influenza, the Paramvxoviridae, such as the Newcastle disease (NDV), the Picornaviridae. such as the virus responsible for encephalomyelitis (AE), the Reoviridae, responsible for tenosynovitis, the Retrovirus such as the virus responsible for lymphoid leukosis (LL), the virus responsible for chicken anaemia (CAV).
They are in particular chlamydia, such as Chlamydia psittaci.
They are in particular mycoplasmas such as Mycoplasma qallisepticum and M. svnoviae.
They are in particular bacteria such as Escherichia coli, Haemophilus including H. paraqallinarum which is responsible for coryza, Pasteurella including P. multocida which is responsible for cholera, Salmonella - 14 including S. gallinarium responsible for typhus and S. pullorum. Clostridium including C. botulinum which produces a toxin responsible for botulism, C. perfringerts and C. septicum responsible for dermatoses, C. colinum.
Campilobacter jejuni. Streptococcus aureus.
They are in particular protozoa such as Eimeria which is responsible for coccidiosis and Cryptosporidiosis baileyi which is responsible for cryptosporodiosis .
They are in particular worms such as cestodes and nematodes including Ascaridia galli.
They are in particular fungi such as Aspergillus fumiqatus.
The preferred antigens are those of the infec15 tious bursal disease virus (IBDV), the infectious bronchitis virus (IBV), the virus responsible for chicken anaemia (CAV), the protozoa Eimeria which is responsible for coccidiosis, the Newcastle disease virus (NDV) and the Marek's disease virus (MDV).
The antigens which are particularly preferred are those of the infectious bursal disease virus (IBDV), the infectious bronchitis virus (IBV), the virus responsible for chicken anaemia (CAV) and the protozoa Eimeria which is responsible for coccidiosis. Good results have been obtained under the following conditions: for IBDV: all or part of the open reading frames comprising polyprotein and parts of polyprotein. Such proteins are in particular VP2, VP3 and VP4. All combinations or modifications thereof are also included. These modifications consist, for example, of the insertion of a cleavage site, for IBV: the antigen E2. for Eimeria: the natural surface antigen TA4 and the surface antigen TA4 whose proteolytic cleavage site has been modified. for CAV: the protein P50.
Excellent results have been obtained with IBDV, the heterologous protein being part of the polyprotein - 15 comprising the amino acids 1 to 493 followed by the amino acids 1010 to 1012, in which the protein VP2 is included; as represented in Figure 9.
The DNA sequences may encode the complete protein 5 or, alternatively, fragments of the protein, and may induce the appropriate immune response in the animal. Other molecules, besides antigens, may also be taken into consideration including growth factors and immunomodulatory agents such as interleukins. The present invention is also intended to produce in vivo, in poultry, a factor which plays a role in the metabolism of the animal, such as for example a growth hormone or a growth hormoneinducing factor. The present invention also relates to the preparation of proteins or peptides in cell cultures in vitro or in vivo in the animal. Depending on the heterologous protein introduced, it may be suitable, in particular, as enzyme, as nutritive constituent or, in the field of human or animal health, as pharmaceutical product for human or veterinary use.
Moreover, multiple recombinant viruses, carrying several heterologous genes, may be generated by cloning several genes into the same genome, into the same site, or into different regions or sites. A polyvalent product may also be created by combining different recombinant viruses.
Animal targets for the Avipox virus according to the invention are birds, in particular poultry. The recombinant virus may also be used in species other than fowls .
The vaccine according to the invention may be administered in various forms which are known to a person skilled in the art. Normally, the vaccine is administered by the oral route in feed or in drinking water, by the intranasal route, by subcutaneous injection, by aerosol, by intramuscular injection or by transpiercing the wing according to the so-called wing web method. Preferably, the vaccine is administered by piercing the wing membrane according to the so-called wing web method, by - 16 intramuscular injection or by subcutaneous injection.
The vaccine according to the invention is formulated in a manner known to a person skilled in the art. Normally, the vaccinal composition contains stabilisers which are appropriate for the mode of administration of the vaccine. It may be preserved in freeze-dried form.
The present invention is illustrated by the following examples.
Example 1 - Purification of the CNP virus and its DNA As Fowlpox virus, the vaccinal strain marketed by the company Solvay under the trademark POULVAC CHICK-NPOX, CHICK-N-POX, CHICK-N-POX TC, POULVAC CHICK-N-POX TC, (CNP), is used as attenuated live vaccine. The initial stock is obtained from a field strain passed several times on eggs and adapted to the cells in vitro by 2 passages on CEF (chicken embryo fibroblasts) and 5 passages on the quail cell line QT35 described by Cho (1981). The quail cell line QT35 can be obtained from Dr. Moscovici (6816 Northwest 18th Avenue, Gainesville, Florida 32605, United States) who isolated it and who distributes it.
CNP is cultured on the cell line QT35 whose culture media consists of E199 (Gibco, 500 ml), F12 (Gibco, 500 ml), LAH (Gibco, lactalbumin hydrolysate, ml), FCS (Gibco, foetal calf serum, 25 ml) and fructose (5 ml of a solution at 200 g/1); incubation at 38°C, 3% of C02. The normal multiplicity of infection (moi) is 0.01 virus per cell, the cells being 80% confluent.
A stock of virus was purified as follows: the cells, infected with the CNP Fowlpox virus and taken up in PBS phosphate buffer (Phosphate Buffered Saline, Gibco), are centrifuged at 6,000 g (15 min). The pellet is resuspended in Tris (pH 9, 1 mM) , tyypsinised (trypsin at 0.25 mg/ml final concentration; Gibco) and sonicated.
This material is deposited on a 36% (weight/volume) sucrose layer and centrifuged for 45 minutes at 30,000 g.
The pellet is taken up in 1 mM Tris, pH 9.0. Finally, the viruses are centrifuged for 30 minutes at 40,000 g. The - 17 pellet is taken up in lysis buffer: 10 mM Tris-HCl, pH 8.0, 10 mM EDTA, 1% SDS (Sodium Dodecyl Sulphate), 500 /jg/ml proteinase K (Boehringer), 0.1 mg/ml RNase (Boehringer) and incubated for 2 hours at 37°C. The phenol-extracted DNA is precipitated with ethanol. In the order of 20 μς of DNA were purified from 40 150-cm2 flasks infected.
Example 2 - Construction of an EcoRI genomic library and a BamHI genomic library of CNP The genetic techniques used are described by Maniatis et al., 1982. The restriction enzymes, the polymerases, ligases and phosphatases were provided by the companies Pharmacia, Boehringer and Biolabs. The synthetic DNAs were provided by the company Eurogentec.
The EcoRI or BamHI restriction fragments of the viral DNA were ligated inside the vector pUC18 described by Messing (1983) and introduced into the bacteria E. coli MC1061 (araD139, (ara. leu)7697. lacX74, qalU. galK, hsdR. strA. sold by the company Pharmacia) . The two genomic libraries are stored at -70°C in glycerol in the form of two suspensions of transformed cells. Twenty four % of the plasmids contain an insert. Seventeen BamHI fragments and 45 EcoRI fragments were differentiated on the basis of their size and their mode of restriction by Bql2 or HinFl. The inserts are 0.5 to 15 kb in size; the sum of the BamHI inserts thus characterised is 82 kb and 210 kb for the EcoRI fragments. The size of the Fowlpox genome is close to 300 kb (Coupar et al., 1990). The fragments isolated therefore represent 25% for BamHI and 70% for EcoRI relative to the total genome.
Example 3 - Cloning of the TIR-carrying fragments The terminal inverted repeats (TIR) are two identical sequences present at the ends of the Pox genome in opposite orientations. A sequence of more than 17 kb at one end of the genome of the strain HP of Fowlpox has been published (Campbell et al., 1989 and Tomley et al., 1988). It comprises about 10 kb of the repetitive sequence and 7.0 kb of its adjacent sequence. - 18 Cloning of the TIR EcoRI fragments is carried out. The repetitive sequence contains an EcoRI site. As shown in Figure 2, two EcoRI fragments are cloned: each carries part of the TIR and a unique adjacent sequence.
The unique sequence is delimited by the EcoRI site which is nearest to the TIRs. These two fragments were isolated by means of an oligonucleotide which is complementary to the sequence situated in the repetitive part. The first fragment is 6.2 kb in size and, by convention, will be denoted TIR-L. The second is 9.0 kb in size and, by convention, will be denoted TIR-R. The sequence of the TIR-L EcoRI fragment of CNP is identical to the one published.
The junction between the TIR and the unique sequence deduced from comparison of the TIR-L and TIR-R sequences, is situated at nucleotide 4007, the BamHI site of the sequence published by Tomley et al. (1988) being taken as nucleotide number 1. The junction is situated in the open reading frame denoted ORF 3 by these authors.
Examnle 4 - Creation bv site-directed mutagenesis of BamHI sites inside the TIR Open reading frames (ORF) are deduced from the analysis of the nucleotide sequences of the TIRs. In particular, ORF 1 is situated between the nucleotides 416 and 1674, ORF 2 is situated between the nucleotides 2166 and 2671 and, finally, ORF 3 is situated between the nucleotides 3606 and 4055 and coded on the complementary strand. The first nucleotide G of the BamHI site of the TIRs is taken as nucleotide No. 1. These ORFs delimit two large noncoding intergenic sequences, denoted region /31, between ORF 1 and ORF 2 on the one hand, and region β2 between ORF 2 and ORF 3 on the other hand. These are two intergenic regions which are chosen as insertion regions.
A unique cloning site was introduced by site35 directed mutagenesis (BioRad mutagenesis kit) in /31 and in /32. The BamHI site was chosen as cloning site because it is compatible with other restriction sites of which Bell and Bql2. The location of the cloning site was - 19 chosen approximately in the middle of each intergenic region so as to avoid any risk of separating the transcription signals from their respective genes, that is to say: - in the region βί: the site Bl is the sequence 'GATC 3', at the nucleotide 1842, which is converted to BamHI GGATCC by insertion of a G in 5' and a C in 3'; in the region /32: the site B2 is the sequence 10 5'GGATT 3', at the nucleotide 3062, which is converted to BamHI by mutation of the second T to CC. There are two BamHI sites inside the plasmid carrying the TIR-L fragment (Example 3). One site is derived from the vector pUC18. The second site is derived from the TIR and is situated at 71 nucleotides downstream of the EcoRl site chosen for the cloning (Campbell et al., 1989; Figure 2). These two BamHI sites were deleted from the plasmid carrying the TIR-L, by BamHI restriction followed by filling using Klenow polymerase and ligation.
The plasmid resulting therefrom is pTIRl.
To generate a BamHI site in Bl, the 0.9 kb Hindi! fragment of pTIRl was cloned into the vector pBSPlus marketed by the company Stratagene. The mutagenesis primer was: 5'TTTCGAAAGACTTTGGATCCGTAGTATAATATTATA 3'.
The nucleotides in bold, that is to say GGATCC, are the sequence which is recognised by BamHI.
To generate a BamHI site in B2, the 1.7 kb Xbal fragment of pTIRl was cloned into pBSPlus. The primer was: 'TATATCACGGGATCCAAAAGGTTATTAGTAGTC 3'. The nucleotides in bold, that is to say GGATCC, are the sequence which is recognised by BamHI.
The reinsertion of each mutant fragment into pTIRl is the result of the ligations: - for Bl: Hind3-Scal of the pTIRl (1491 bp) + ScalAat2 of the pBSPlus after mutagenesis (485 bp) + Aat2-EcoRl of the pTIRl (4220 bp) + EcoRl-Hind3 of the pTIRl (2635 bp); - 20 for B2: Xhol-Spll of the pTIRl (8512 bp) + Spll-Xhol of the pBSPlus after mutagenesis (318 bp).
These two ligations generated the vectors pTIRBl and pTIRB2. Their restriction maps are in Figures 3 and 4.
The plasmid pTIRBID was generated from the plasmid pTIRl by deletion of its 2657-bp EcoRl-Hpal fragment.
Example 5 - Cloning of the Vaccinia promoters Pll and P7.5 Pll and P7.5 are known Vaccinia promoters. Pll is the promoter of the gene encoding the protein Pll which is transcribed during the late phase of the viral infection. P7.5 is the promoter of the gene encoding the protein P7.5 which is transcribed both during the immediate and late phases.
Construction of vectors with unique Bql2 and Bell sites Two cloning vectors containing the unique Bql2, Bell and BamHI sites were constructed so as to allow the successive clonings of cassettes which are compatible with BamHI. The sequences of the Bql2 and Bell sites were introduced into the BamHI site of pBSPlus by cloning of the following synthetic DNA: Bq12 Bell BamHI ' GATCGAGATCTTGATCAG 3' 3' CTCTAGAACTAGTCCTAG 5' The vectors are pBSLKl and pBSLK2. The linkers are in the orientation: pBSLKl ... Aval/Smal-BamHI-Bell-Bq12-Xbal ... pBSLK2 ... Aval/Smal-Bql2-Bcll-BamHl-Xbal ...
Cloning of the promoter P7.5 The Bcll-BamHl fragment, 143 bp in length, of the plasmid pGS20 contains the P7.5 promoter sequence (Mackett et al, 1984). The sequence is presented below (Venkatesan et al., 1981; Cochran et al., 1985). The late and immediate promoters are underlined. The last BamHI base is at 10 bp from the initiator ATG of the gene. - 21 5'TGATCACTAATTCCAAACCCACCCGCTTTTTATAGTAAGTTTTTCACCCATAAATAATAAATA Bell __ _ . Late CAATAATTAATTTCTCGTAAAAGTAGAAAATATATTCTAATTTATTGCACGGTAAGGAAGTAGAa .. Immediate TCATAAAGAACAGTGAC GGATCC BamHl The Be11-BamHl fragment was cloned into the Bell and BamHl sites of the plasmids pBSLKl and pBSLK2, generating the plasmids plP75 and p2P75 respectively. To allow the Bell digestion, pBSLKl and pBSLK2 are extracted from the strain JM110 which can be obtained from ATCC (Amercian Type Culture Collection) under the reference ATCC 47013.
Cloning of the promoter Pll The sequence of the promoter Pll was cloned in the form of a synthetic DNA using the sequence data from 15 Bertholet et al., 1985. Hanggi et al., (1986) have shown that a 30-nucleotide fragment upstream of the first nucleotide of the mRNA contains the promoter.
The synthetic DNA is a 40-mer fragment carrying a Bql2 site and a BamHl site at its ends. This DNA was 20 cloned into pBSLKl in order to generate plPll, and into pBSLK2 in order to generate p2Pll. The Bql2-BamHl fragment of p2Pll was subsequently cloned into the Xho2BamHl sites of pACYC184. pACYC184 is a vector described by Chang and Cohen (1978). The ligation between Xho2 (GGATCT) and Bql2 (AGATCT) restores Bql2.
The sequence of the Pll-carrying synthetic DNA is: 'GATCAAATTTCATTTTGTTTTTTTCTATGCTATAAATAAG 3' TTTAAAGTAAAACAAAAAAAGATACGATATTTATTCCTAG ----- -----Bgl2 BamHl Example 6 - Construction of an LacZ gene-carrying cassette which is compatible with the BamHl restriction site The expression of the LacZ gene will allow screening of the recombinant viruses. - 22 A Bql2-BamHI cassette carrying the LacZ gene was constructed by site-directed mutagenesis. This cassette was cloned into the plasmid pBSPlus (stratagene) deleted from the fragment LacZa and this in order to avoid recombination between the two homologous sequences, one with LacZ, the other with LacZa. This plasmid is pBSMutLacZl. The sequence of the ends of the LacZ gene after mutagenesis is given below. The numbers correspond to the numbers of the amino acids of the natural protein.
En 5' , Bgl2 Ncol 8 9 10 ... AGATCTCACC ATG GCC GTC GTT ...
Met Ala Val Val <- (3-gal En 3', ... CAA AAA TAA TAA TAA CCGGGCAGG GGGGATCC ...
... Gin Lys *** *** *** -> Example 7 - Cloning of the LacZ gene behind the promoters P7.5 or Pll The LacZ, Bql2-BamHI. cassette of pBSMutLacZl was cloned into the Bql2-BamHl sites of p2P75 and p2Pll in order to generate p75Lac and pllLac respectively. Expres15 sion of the LacZ gene is obtained in E. coli when it is placed behind the promoters P7.5 or Pll. The transformant colonies have a blue colour on a media containing X-Gal (chromogenic substrate: 5-bromo-4-chloro-3-indolyl-/9-Dgalactopyranoside) which produces a blue coloration under the action of /9-galactosidase. This test proves that the gene is functional. The PllLac cassette in the form of a Bql2-Hind3 fragment of the plasmid pllLac was also cloned into the Xho2 and Hind3 sites of pACYC184, thus generating pACPHLac. The map of pllLac is in Figure 5. - 23 Example 8 - Cloning of the cassettes P75Lac and PllLac into the plasmids pTIRBl and pTIRB2 The Bgl2-BamHl fragment of pllLac (or pACPllLac) and the Bgl2-BamHl fragment of p75Lac carry the cassette 5 'Promoter P7.5 or Pll followed by the LacZ gene' (Example 7). These fragments were cloned into the BamHI sites of pTIRBl and pTIRB2 (Example 4), in the two possible orientations, using the LacZ phenotype for the screening. Six plasmids were isolated among eight possible recombinants. Their numbering is given below. Let us assume that the '+' orientation is that which places the transcription of the LacZ gene in the ORFl to ORF2 or ORF2 to ORF3 direction, and the '-' orientation that which corresponds to the reverse orientation. In the plasmid names, 'P75Lac' and 'PllLac' mean that these cassettes are in the '+' orientation while 'LacP75' and 'LacPll' mean that these cassettes are in the 'orientation. By way of example, the map of the plasmid pTIRBlP75Lac is in Figure 6.
No. Prom Site Ori Name No. Prom Site Ori Name 3 P7.5 Bl + pTIRBlP75Lac 8 Pll Bl + pTIRBlPllLac 4 P7.5 B2 + pTIRB2P75Lac 9 Pll Bl - pTIRBlLacPll 5 P7.5 B2 - pTIRB2LacP75 10 Pll B2 - pTIRB2LacPll No. = number given to the plasmid.
Prom = promoter.
Site Bl or B2 = BamHI cloning site introduced into TIR.
Ori = orientation. The orientation is + when the direction of transcription of LacZ is in the ORFl to ORF2 or 0RF2 to ORF3 direction. The - orientation is the reverse. name of the tranfer plasmid.
Name - 24 Example 9 - Optimisation of the transfer and screening conditions and isolation of the CNP-LacZ recombinant viruses The principle for the construction of a recom5 binant CNP virus is presented in Figure 1. The transfer procedure is as follows: On day D=l, 2.5 χ 106 QT35 cells are inoculated, per 25-cm2 flask, into 5 ml of growth media (composition described in Example 1).
On day D=2, the following transfer is carried out: Virus: a 1-ml vial of freeze-dried CNP vaccine is rehydrated with 3 ml of sterile Milli Q water and stored at -70°C. This virus stock is thawed and subjected to gentle sonication for 1 minute. It is then diluted in the culture media labelled E119-F12 and which corresponds to the media E119 described in Example 1, without LAH or serum or fructose, to achieve a multiplicity of infection of 0.05 virus per cell in 2 ml of media. The culture media is then replaced with the viral suspension and the culture is incubated for 2 h at 38°C.
Plasmids: 20 /ig of plasmid are mixed with 400 μΐ of water and 100 μ1 of 1.25 M CaCl2, 500 μΐ of 2x BBS buffer (BES buffer saline) (50 mM of BES (Sigma), 280 mM NaCI, 1.5 mM Na2HPO4; pH 7.0) are added dropwise and the mixture is incubated for 15 to 30 minutes at 25°C. One ml of the plasmid preparation is then added to the cells after removing the media. The mixture is then incubated for 30 minutes at 38°C. 4 ml of LAH-free media supplemented with % FCS and 15 mM Hepes (Sigma) pH 7.2, are then added.
The mixture is again incubated for 4 hours at 38°C. The media is then replaced with 5 ml of the growth media labelled E199 (composition described in Example 1).
On day D=0, the viral cells are harvested as described in Example 1.
The screening is based on the production of /9-galactosidase which is detected by a plaque assay test on a Petri dish. The procedure on a 6-cm Petri dish - 25 is as follows: On day D=l: 2.5 χ 106 cells are inoculated into 5 ml of growth media.
On day D=2: this culture is infected with 1 ml of 5 virus diluted 1:10 and 1:100, the mixture is incubated for 4 h at 38°C and 4 ml of growth media (composition described in Example 1) are then added.
On day D=3: the media is replaced with 5 ml of an agarose layer consisting of 1 volume of 2% agarose [see plague agarose (FMC) dissolved in water] and 1 volume of the following mixture: 9 ml of 2 x 199 media (Gibco), 0.5 ml of LAH (Gibco) and 0.1 ml of Hepes (pH 7.2, 15 mM final) and 1.0 ml of FCS. The melted agarose and the mixture are maintained at 38°C before being mixed. The agarose is allowed to gel for 30 minutes at room temperature and the mixture is then incubated at 38°C.
On day D=6: the culture is layered with 2 ml of 1% agarose in PBS (Gibco) containing 0.3 mg/ml of X-Gal ( 5-bromo-4 - chi or o-3- indoly 1-/3 -D-gal act opy r ano side, Boehringer). The X-Gal is dissolved at 30 mg/ml in DMSO (dimethyl sulphoxide, Fluka).
On day D=7: the number and proportion of blue plaques relative to the number of colourless plaques are counted. Five plaques are then individually removed by means of a Pasteur pipette. The viral cells are stored in 500 pi of growth media at -70°C.
The recombination frequencies for each plasmid are presented in the table below. The notation of the recombinant viruses is 'V' followed by the number of the transfer plasmid (as defined in Example 8). The percentage of recombinants ranges from 0.1% to 0.5%, which corresponds to the literature data for Pox viruses. A representation of the recombinant genomes is schematically presented in Figure 7. - 26 IE 921686 Virus Blue/total % Virus Blue/total % V3 7/1400 0.5 V8 1/1000 0.1 V4 10/2000 0.5 V9 60/25000 0.25 V5 15/5000 0.3 V10 50/30000 0.17 Blue/total = number of blue plaques/total number of plaques % = percentage of blue plaques.
Example 10 - Purification of the CNP/LacZ recombinant viruses A clone is obtained by successive purification of a blue plaque on a Petri dish (as described in Example 9). In principle, when all the plaques are blue, all the viruses express the LacZ gene and are no longer contaminated with the wild virus. Three to four passages are required in order to achieve this homogeneity. By way of example, the variation of the proportion of blue plaques during the passages was: Number of passages 1st 2nd 3rd 4th 20 Virus Blue/total % Blue/total % Blue/total % Blue/total % V3 20/200 10 40/50 80 22/22 100 V4 1/20 20 20/30 70 95/100 95 100/100 100 V5 50/500 10 2/5 40 30/30 100 V8 50/200 25 4/5 80 8/8 100 25 V9 1/5 20 1/1 100 V10 1/100 1 3/20 15 12/12 100 Blue/total = number of blue plaques/total number of plaques percentage of blue plaques. - 27 Structures which are typical of the Pox viruses, in particular the inner structure which has the form of a dog bone, are clearly visible on an electronic microscope photograph of a section of QT35 cells infected with the recombinant virus V8.
Example 11 - Production of a large quantity of each recombinant.
Six recombinants were amplified by three successive passages in flasks. The titre of the second passage ranges from 4 x 105 to 1.1 χ 107 TCID50 (tissue culture infectious dose) per ml. Only V10 has a titre of less than 104. The other recombinants, for which the titres are normally between 105 and 107, indeed multiply as well as the wild strain.
Example 12 - Plaque assay analysis of the stability of the LacZ gene inserted into TIR The LacZ gene inserted into the viral genome may be stable or unstable depending on the type of recombination which occurred (this is stated explicitly by Shuman et al., 1989). Thus, if there are two recombinations on either side of the insert, the LacZ gene inserted is stable. On the other hand, a simple recombination results in the insertion of the complete transfer plasmid and therefore of LacZ. This virus gives blue plaques. However, the viral genome carries homologous sequences in a direct orientation, whose recombination may result in the loss of the insert and the appearance of non-blue plaques.
Moreover, a change in the sequence of a TIR, in Pox viruses, may be transferred to the other TIR during the viral infection and replication cycles. A double recombination may insert LacZ into TIR-L; the plaque of this virus appears blue. During the following infections, a recombination between this recombinant TIR-L and a wild TIR-R generates a mixed population of TIR-L/LacZ, TIR-L/LacZ-TIR-R/LacZ and WT (wild) virus. Other recombinations may, on the other hand, generate the last possible type which is TIR-R/LacZ. Consequently, a blue - 28 plaque may contain three types of virus: viruses wich have lost the LacZ gene, viruses which carry a single copy of the LacZ gene and viruses which carry two copies of the LacZ gene.
The homogeneity of a viral preparation is tested using a plaque assay after a few successive infections in liquid media (Example 9). The plaque assays of the 3rd passages of the viruses V3, V4, V5, V8, V9 and VIO produce the following proportions of blue: Virus P3 : Blue/total % P6 : Blue/total % V3 60/70 85 - V4 80/90 88 70/80 88 15 V5 95/100 95 - V8 50/50 100 40/40 100 V9 70/70 100 - VIO 3/10 30 — P3 and P6 = 3rd and 6th passage of the virus.
Blue/total = Number of blue plaques/total number of plaques.
% = Percentage of blue plaques.
= Not carried out.
In conclusion, the preparations of the recombinant viruses V8 and V9 are homogeneous. The recombinant V8 is stable up to the 6th passage. On the other hand, the preparations V3, V4 and V5 are not homogeneous. They contain a proportion of 5 to 20% of wild-type virus. This proportion is even higher for VIO.
Examnle 13 - Analysis of the CNP/LacZ genomes bv Southern blotting The homogeneity of a viral preparation is tested by Southern blotting (Maniatis et al., 1982). The res35 triction fragments of the genomes of the recombinant viruses and of the non-recombinant viruses are - 29 differentiated on the basis of their size.
The procedure for the preparation of the viral DNA is as follows: On day D=l: a 25-cm2 flask containing 5 ml of 5 growth media is inoculated with 2 x 106 QT35 cells.
On day D=2: the cells are infected at a multiplicity of infection of 0.01.
On day D=5: the cells are detached using a scraper (Costar). The mixture is centrifuged for minutes at 6,000 g. 500 μΐ of lysis buffer consisting of 10 mM Tris-HCl, pH 8.0, 10 mM EDTA, 0.1% SDS, 0.1 mg/ml RNase, 0.1 mg/ml proteinase K are added to the centrifugation pellet. The cells are transferred into an Eppendorf tube. The suspension obtained is then stirred and incubated for 1 hour at 50°C. The aqueous phase is then extracted 3 times with phenol chloroform. The DNA is precipitated with 0.3 M sodium acetate and 2 volumes of ethanol at -20°C for 15 minutes. The mixture is centrifuged for 10 minutes at 18,300 g. The centrifugation pellet is suspended in 500 μΐ of water. In the order of 5 μΐ of this total DNA suspension are sufficient for a Southern blotting.
For the Bl site The genomes are digested with EcoRI. The probe is the plasmid pTIRBlLacP75 digested with EcoRI. This probe differentiates the recombinant and parental TIR-L and TIR-R fragments. The sizes of the fragments are 9.3 and 6.2 kb for the wild virus, 7.4, 5.1 (doublet) and 4.4 for V3, 7.4, 4.9 and 4.4 kb for V8 and finally for Vp, 10.4, 7.3 and 2.0 kb (doublet). The viruses V8 and V9 acquired two copies of the LacZ gene, one in each TIR, and do not contain any parental-type TIR fragment. This is, on the other hand, the case for the virus V3.
Since a copy of LacZ can be cloned into each TIR, it can be concluded that the insertion site Bl is nonessential for the development of the virus and for its growth on cultured cells. Moreover, given that the LacZ gene is about 3 kb in size, the isolation of these double - 30 recombinants proves that 6 kb can be inserted per genome of the CNP virus.
For the B2 site The Southern blots show the presence of recombi5 nant TIR-L and TIR-R fragments, but also of the parental fragments in the preparation of V4, V5 and VIO. These three preparations are therefore not homogeneous.
Example 14 - Alternative for isolating a double recombinant in the Bl insertion site The development of recombinations in the TIRs foretells the appearance of stable double recombinants in the progeny of a virus carrying a wild TIR and a recombinant TIR. Viral plaques are reisolated from a blue plaque using a Petri dish plaque assay, either by a new plaque assay or on 96-well microtitre plates. The genome of each new plaque may be analysed either by Southern blotting or by PCR. These different possibilities were exploited.
The Southern blotting carried out on the virus genomes of 10 different blue plaques obtained from a plaque assay for the 3rd passage of V3, showed that, of the 10 plaques, one preparation is homogeneous and contains a LacZ insert in each of the TIRs.
For the microtitre plate, the dilution is such that there is zero or one viral plaque per well. This optimal dilution is assessed by prior titration. Good results are obtained by infecting a microtitre plate (200 μΐ per well, 20 ml per plate) with 50 μΐ of the viral suspension obtained from a Petri dish plaque assay taken up in 1 ml. When the plaques are clearly visible, the wells containing a plaque are noted. After freezing and thawing, 100 μΐ of media are taken per well.
For the PCR, the total DNA is rapidly extracted under the following conditions: the mixture is centri35 fuged for 10 minutes at 10,000 g, the pellet is taken up in 200 μΐ of lysis buffer (10 mM Tris-HCl, pH 8.0, 10 mM EDTA, 0.1% SDS), supplemented with RNase (0.1 mg/ml) and proteinase K (0.1 mg/ml) and the mixture thus obtained is - 31 incubated for 1 hour at 50°C. The aqueous phase is then extracted three times with phenol/chloroform. The DNA is precipitated from this aqueous phase with ethanol. The pellet obtained is taken up in 50 μΐ of water. 10 μΐ of this suspension are used per PCR. The PCR conditions used are those recommended by Perkin Elmer (GeneAmp DNA Amplification Reagent Kit). The amplified fragments are analysed on agarose gel.
The primers 5168 and 5169 hybridise on either side of the Bl insertion site, downstream and upstream of the site respectively. Their sequence is as follows. Number 5' to 3' sequence Complementary to 5169 5' CCTTTACTGTTAGTTCTACAATCGAAATTATGC 3' FPV 5168 5' CATGTAGATTTTAATCCGTTAACACGCGCAG 3' FPV 15 3254 5' GCCGGAAAACCTACCGGATTGATGG 3' LacZ A 220-bp fragment is amplified on the wild TIRs and a fragment of more than 3 kb for the recombinant TIR containing the LacZ gene. For the detection of the LacZ gene, a second amplification uses the primer 5168 situated downstream of the Bl site and the primer 3254 situated inside the LacZ gene. A 674-bp fragment is amplified. This judicious choice of primers therefore enables the recombinant TIRs and the non-recombinant TIRs to be differentiated. A viral suspension is considered to be homogeneous, double recombinant, if the WT (wild) fragment is not amplified. The controls are the genome of the WT virus, the plasmids pTIRBl and pTIRBlLac.
Primers Wild fragment Recombinant fragment 5169 + 5168 220 bp 3254 + 5168 kb 674 bp - = no amplified fragment. - 32 IE 921686 Example 15 - Expression of the LacZ gene in tissue culture by the CNP/LacZ recomhinant viruses The (S-galactosidase (β-gal) activity is measured using o-nitrophenyl-^-D-galatopyranoside (ONPG) as substrate. The enzyme converts ONPG to galactose and o-nitrophenol which is yellow in colour and the quantity of which is measured by absorption at 420 nm. This absorption is converted to /3-gal units using a calibration curve according to the rule 1 /Sgal unit = 1 μΐηοΐ of ONP produced/3 x 106 cells/60 minutes of incubation of the extracts at 28°C.
This /3-gal test is carried out as follows, for a flask with a surface area of 25 cm2. Immediate and late phases of infection can be differentiated in Pox viruses.
The shortest is the immediate phase; it lasts for about 6 hours. It ends at the time of the replication of the genome. The late phase starts at the replication and ends at the end of the infectious cycle with the release of viral particles, that is to say three days later. For sufficient expression of LacZ during the immediate phase, the immediate phase is artificially prolonged using cytosine ^-D-arabinofuranoside (AraC) which is an inhibitor of replication. a. Cells On day D=l, 3 x 106 QT35 cells are inoculated, per flask, into 5 ml of growth media.
On day D=2: the cells are infected at a multiplicity of infection of 3 viruses per cell. The mixture is incubated for 1 hour at 38°C. The viral inoculum is then removed by means of a pipette. 5 ml of maintenance media, supplemented or not with AraC (Sigma) at 40 ^g/ml, are added per flask. The cultures are incubated for 16 hours at 38°C. b. Harvest on day D=3 The cells are scraped from the flask.
The culture is centrifuged for 10 minutes at 6,000 g. The centrifugation pellet is resuspended in 500 μΐ of PBS, this suspension is mixed and it is transferred into a 1.4-ml Eppendorf tube.
The cells are then lysed by the addition of 50 pi of CHC13 and 5 pi of 10% SDS. The cell suspension is briefly mixed. This suspension is then centrifuged for minutes at 9,000 g. c. Enzymatic reaction The ONPG substrate for 25 samples is prepared as follows: 27.7 mg of ONPG (Sigma) and 50 ml of diluent consisting of 1 ml of 0.1 M MgSO4 and 1 ml of 2-mercapto10 ethanol (Merck) in a final volume of 100 ml of buffer (90 ml of 0.1 M NaHPOA, pH 7.0, 0.1 M MgSO4, 1 ml of mercaptoethanol) . 1.95 ml of the ONPG solution and 50 pi of the cellular suspension are mixed and the mixture is incu15 bated for 1 hour at 28°C. 2 ml of 1 M Na2CO3 are added to this suspension and the absorbance of this suspension is measured at 420 nm.
Comparison of the /9-gal activity for the recombinant viruses is given below in β-gal units.
Virus Immediate (AraC) Immediate + late (-AraC) Abs u )3-gal Abs u /3-gal 25 wt 0 0 0 0 V3 0.28 57 0.58 120 V4 0.34 71 0.58 120 V5 0.26 52 0.49 101 V8 0.05 10 0.65(1:5) 670 30 V9 0.05 10 0.31(1:10) 640 wt Immediate (AraC) non-recombinant wild type, immediate growth phase artificially prolonged for 16 hours by AraC.
Immediate + late (-AraC) = natural immediate and late phases without AraC.
Abs = absorbance. u β-gal = /3 - ga 1 ac t o s ida s e unit measured. 1:5 and 1:10 = prior 5-fold and 10-fold dilutions of the extracts.
The Vaccinia promoter P7.5 functions during the immediate and late phases of the infection (V3, V4 and V5) ; the promoter Pll has only a late activity (V8 and V9 ) ; the promoter Pll is stronger than the promoter P7.5, as in Vaccinia. The temporal regulation as well as the relative strength of the two promoters are therefore preserved in the CNP virus, whether the insertion is into Bl or B2 or whether it is of the LacZ orientation.
Example 16 - Vaccination of chicks with the CNP/LacZ recombinant virus. Protection against the fowl variola. Immune response against fl-gal The vaccinating power of the CNP/LacZ recombi20 nants is tested. The two criteria selected are the protection against fowl variola and the immune response against β-galatosidase. a. Administration by transpiercing the wing A suspension of the recombinant viruses V4 and V8 or a suspension of the vaccinal CNP strain were injected into one-day-old chicks, certified specific-pathogen-free (SPF), by transpiercing the wing membrane (so-called wing web method) (WW).
The tests are carried out on three groups of 28 to 30 chicks which are vaccinated with V4 or with V8 or with CNP, and on a group of 15 non-vaccinated chicks, as negative control.
Each vaccinated chick received 10 μΐ of a suspension at 5 χ 105 TCID50 (Tissue Culture Infectious Dose)/ml of virus, which is eqivalent to 5 χ 103 TCID50 per bird.
At 29 days, the chicks were brought into contact with the virulent virus (Fowl Pox Challenge Virus strain obtained from Aphis, USA) . - 35 The absence of lesions, evaluated ten days later, shows a protection of all the chicks vaccinated against fowl variola. On the other hand, half of the nonvaccinated chicks had lesions. Analysis of the antibody titres against /3-galactosidase by direct ELISA showed that 21 of the 29 (72%) chicks vaccinated with the V4 viruses and 20 of the 28 (71%) chicks vaccinated with the V8 virus exhibit a seroconversion, that is to say are seropositive.
The ELISA titre being the last dilution which gives an optical density greater than 100, the mean anti-^-galactosidase ELISA titre in the sera of these chicks is 1:800. b. Administration by the intramuscular and subcutaneous routes One-day-old chicks are vaccinated on the first day with 104-4 TCID50 of virus V8 by the intramuscular route (IM, 27 chicks) or subcutaneous route (SC, 34 chicks). They are subjected to a challenge 27 days later. They are protected against the fowl variola (100%). Seroconversion against 0-galactosidase is observed in 24 of the 27 (88%) chicks vaccinated by the IM route and in 27 of the 34 (79%) chicks vaccinated by the SC route.
In conclusion, the immunisation results show: that the recombinant viruses containing the LacZ gene in the TIR regions of their genome, at the Bl or B2 site, preserved their immunogenicity; that the P7.5 and Pll promoters function in the animal; that an antibody response is induced against ^-galactosidase, which is considered here as a heterologous protein which is expressed by the CNP recombinant; - that the intramuscular (IM), subcutaneous (SC) and wing membrane transpiercing (WW) routes are equivalent both in terms of protection against the fowl variola and of the percentage of seroconversion - 36 against /3-galactosidase.
Example 17 - Insertion of the genes, encoding the glycoprotein E2 of the fowl bronchitis virus, into the transfer vectors The virus responsible for the infectious fowl bronchitis (IBV) is a coronavirus. The most important surface antigen of this virus is the protein E2 which consists of two sub-units SI and S2 (Cavanagh, 1983, Cavanagh et al. , 1988). Many serotypes exist including Massachusetts, denoted M41, and Dutch serotypes, especially D1466 and D274 (Kusters et al., 1987).
A recombinant CNP vaccine expressing the E2 protein of an IBV is developed so as to obtain an effective vaccine against the virus responsible for the infectious fowl bronchitis (IBV).
The gene for the protein E2, of the serotype M41, was obtained from Dr. Kusters of the University of Utrecht (NL), as well as large fragments of the E2 genes, of the serotypes D1466, D207 and D274.
A BamHl cassette of the E2 gene of the serotype M41 was constructed by site-directed mutagenesis. The complete gene of the strain D1466 and a complete hybrid gene D207/D274 were constructed from fragments, also on cassettes which were compatible with BamHl. These three cassettes were cloned downstream of the promoter P7.5, thus generating the three plasmids p75M41, p75D1466 and p75D207.
The cassettes P7.5-E2 were cloned into the BamHl site of the transfer vector pTIRBl, and the cassette PllLac is then cloned, downstream of E2, into the BamHl site. These transfer plasmids are pTIRBlP75M4lLac, pTIRBlP75D1466Lac and pTIRBlP75D207Lac. The recombinant viruses are constructed by transfer and purified as described in Examples 9, 10 and 11. The genomes are analysed by Southern blotting as described in Example 13.
The expression of the E2 antigen is detected by the following immunological techniques: ELISA, Western blotting or immunofluorescence, using specific antibodies. A stock of recombinant viruses is produced. Poultry is vaccinated with a dose of these recombinants. The efficacy of the vaccine is evaluated after infection with pathogenic viruses using the conventional methods for infectious bronchitis, and by evaluation of the level of antibodies against the virus.
Example 18 - Insertion of an Eimeria gene into the transfer plasmids - construction of CNP/TA4 recombinants The Eimeria genus comprises parasites of poultry, which are responsible for coccidiosis. Surface antigens have been described for the E. tenella, E. necatrix, E. maxima species in particular (European Patent Applications 0,164,176 and 0,231,537).
An effective recombinant vaccine against coccidiosis is developed.
The E. tenella antigen, denoted TA4 or A4, is a 25-kd protein consisting of two sub-units of 17 kd and 8 kd linked by a disulphide bridge. The gene was isolated from a genomic library and also from mRNA. The complete description of the gene has been published in the abovementioned patent applications.
A BamHI cassette of the TA4 gene was constructed by subcloning. The plasmid pTA406 contains the coding sequence of TA4. The plasmid pTA410 carries the TA4 gene with a modification in the proteolytic sequence which separates the two sub-units. The native sequence Arg-Arg-Leu was replaced by the sequence Arg-Glu-Lys-Arg (described by Kieny et al., 1988), by site-directed mutagenesis. These two BamHI cassettes were cloned downstream of the promoter P7.5 of the plasmid plP7.5, in the orientation which places the TA4 gene under the control of P7.5.
The cassettes P7.5-TA406 and P7.5-TA410 are cloned into the BamHI site of the transfer vector pTIRBlD. The cassette Pll-Lac is then cloned into the BamHI site downstream of the TA4 gene. The transfer plasmids are pTIRTA406Lac and pTIRTA4lOLac. - 38 The recombinant viruses were obtained by transfer as described in Examples 9, 10 and 11. Blue plaques are obtained. The recombinant which carries the TA406 gene is V20; the recombinant which carries the TA410 gene is V21.
A double recombinant V21 virus, that is to say which carries a copy of TA410 and LacZ in each TIR, is purified on each microtitre plate and its genome analysed by PCR as described in Example 14. The primers used and the size of the amplified fragments are presented in the table below. The primer 1871 is complementary to the LacZ gene.
Primers Wild fragments Recombinant fragments 5169 + 5168 220 bp 4 kb 5169 + 1871 — 1.2 kp The expression of the TA4 antigen is detected by the following immunological techniques: ELISA, Western blotting or immunofluorescence, using specific antibodies.
A stock of recombinant viruses is produced. Poultry is vaccinated with a dose of these recombinants. The efficacy of the vaccine is evaluated after a challenge with virulent Eimeria using conventional methods for coccidiosis including analysis of sera, rate of weight gain and clinical signs.
Examnle 19 - Insertion of the polyprotein gene of the infectious bursal disease virus into the transfer vectors The causal agent of the infectious bursal disease virus is a virus of the Birnaviridae family. The virus, called IBDV (Infectious Bursal Disease Virus), causes a highly contagious disease (infectious bursal disease) which affects young chickens and is characterised by the destruction of the lymphoid cells of the bursa of Fabricius. The virus possesses a genome consisting of 2 - 39 segments of double-stranded RNA, called segment A (about 3,400 base pairs; bp) and segment B {about 2,900 bp). The viral particles are without envelopes and are of icosahedral form of about 60 nanometres in diameter. Four viral proteins were clearly identified: VP1 with a molecular weight (MW) of 90 Κ (K: kilodalton); VP2, MW of 37 K to 40 K; VP3, MW of 32 K to 35 K and VP4, MW of 24 K to 29 K (Dobos 1979, Fahey et al., 1985). VP2 is derived from a precursor VPX with an MW of 41 K to 54 K.
The segment B encodes VPl which is probably the viral polymerase. The segment A encodes 3 other proteins. These proteins are generated, by proteolytic cleavage, from a precursor with an MW of about 110 K corresponding to a large open reading frame of the segment A. The protein VP4 is involved in this proteolytic cleavage (Jagadish et al., 1988). The proteins VP2 and VP3 constitute the viral capsid. VP2 contains the antigenic determinants which are capable of inducing the synthesis of antibodies which neutralise the virus (Becht et al. , 1988; Fahey et al., 1989).
A recombinant Fowlpox vaccine against the infectious bursal disease is developed.
The stages of this development are as follows: 1. Isolation of the genetic material of the selected IBDV strain, namely the EDGAR strain. The EDGAR virus strain can be obtained from the United States Department of Agriculture (USDA, APHIS 6505 Belcrest Road, Hyattsville, MD 20782, United States). 2. Synthesis, cloning and determination of the nucleo30 tide sequence of the cDNA corresponding to the segment A. 3. Insertion of the cDNA as well as the sequences required for the expression of this genetic material in animal cells infected with Fowlpox, and the sequences permitting screening of the recombinant Fowlpox viruses, into the transfer plasmid pTIRBl described in Example 4. - 40 4. Isolation and purification of the recombinant viruses .
. Genetic analysis of the recombinant viruses. 6. Analysis of the expression in vitro, in cell culture, of the IBDV genes carried by these recombinant viruses. 7. Vaccination of chicks with the recombinant viruses and analysis of the protection against infectious bursal disease.
Stage 1 The viral RNA of the EDGAR strain was isolated from the bursas of chickens infected with the virus.
About 40 g of bursas, harvested 7 days after infection with the virus, are ground in 40 ml of TNE buffer (TNE: 10 mM Tris-HCl, 100 mM NaCI, 1 mM EDTA, pH 8). The ground product is centrifuged at 17,000 g and the agueous phase obtained is deposited on a preformed sucrose gradient consisting of 2 layers, containing 40% and 60% sucrose (% by weight/volume, in the TNE buffer).
The gradient is centrifuged at 134,000 g for 2 hours 30 minutes. The 40%-60% interphase of the sucrose gradient is harvested and it contains the partially purified virus. 5 ml of this phase are added to 5 ml of buffer containing 10 mM Tris-HCl, 100 mM NaCI, 0.5% SDS, mM EDTA, 2 mg/ml proteinase K, pH 7.5. The mixture is incubated for 1 hour at 37°C. The agueous phase is then extracted with phenol/chloroform. The nucleic acids of the agueous phase are precipitated with ethanol in the presence of 0.8 M LiCl and taken up in 500 μΐ of water.
Stage 2 The synthesis and the amplification of the cDNA corresponding to the segment A were carried out according to the method described in GENEAMP RNA PCR KIT, PERKIN ELMER CETUS and using synthetic oligonucleotides or primers, which are complementary to the sequence of the segment A, as primer for the synthesis of the first DNA strand by reverse transcriptase. The choice of these synthetic oligonucleotides was determined by analysis of - 41 the published sequences of the segments A of other IBDV strains: the Australian strain 002-73 (Hudson et al., 1986), the German strain CU-1 (Spies et al., 1989) and the British strain 52/70 (Bayliss et al., 1990). The sequence of the primers and their position relative to the segment A of the EDGAR strain are presented in Figures 8 and 9.
Analysis of the published sequences for the IBDV strains indicates that two other open reading frames exist on the same coding strand of the segment A, in addition to the large open reading frame ORF1 which encodes the proteins VP2, VP4 and VP3. One of them, ORF2, which is initiated 34 bp upstream of the ATG of ORFl, overlaps the latter and is 435 bp in length. The other, ORF3, is initiated 32 bp upstream of 0RF2 and is 31 bp in length. The possible role of these ORFs in the biology of the virus is currently undefined.
Four double-stranded cDNA fragments, delimited by the pairs of primers, 0-lb (585 bp), 1-2 (1129 bp), 3-4 (670 bp), 5-6 (1301 bp) respectively and spanning ORFl and ORF2 of the segment A (see Figure 8), were generated.
These fragments were cloned into the plasmids pBSPlus or pBSLKl; six plasmids were thus constructed (see Figures 8 and 10): - 42 IE 921686 Name of plasmid Size (bp) Construction scheme pBSIBDVO 3478 pBSPlus (Pstl + Hinc2) + 277-bp Pstl fragment of the 0-lb fragment pBSlA2 3932 pBSLKl (Pstl + T4 DNA polymerase, Sacl) + 760-bp Sacl fragment of the 1-2 fragment pBSlB 3538 pBSLKl (Pstl + T4 DNA polymerase, Sacl) + 369-bp Sacl fragment of the 1-2 fragment pEDGAR34i 3887 pBSLKl (Pstl + T4 DNA polymerase, Hinc2) + 670-bp 3-4 fragment pBS3A 4175 pBSLKl (Pstl + T4 DNA polymerase, Sphl) + 956-bp Sphl fragment of the 5-6 fragment pBS3B 3509 pBSLKl (Pstl + T4 DNA polymerase, Sphl) + 345-bp Sphl fragment of the 5-6 fragment The nucleotide sequences of the IBDV fragments of these plasmids were determined and aligned so as to reconstitute the sequence of the segment A of the EDGAR strain, which is amplified by PCR (see Figure 9). The original sequences of the EDGAR strain, which were replaced by the use of primers which were defined on the basis of published sequences of other IBDV strains, were also determined from the amplification products of these regions using primers situated outside them.
The reconstruction of the segment A from the clones obtained is schematically represented in Figure .
The stages are as follows: 1. Construction of pEDGAR!2: pBSlA2 (EcoRI + T4 DNA polymerase, Sacl) + pBSlB (Sphl + T4 DNA polymerase, Sacl) 2. Construction of PEDGARM12 by site-directed mutagenesis on PEDGAR12: a. deletion of the Sphl site of pEDGARl2 situated upstream of the IBDV sequence: Original sequence Sphl ' GTCTGATCTCTACGCATGCAAGCTTTTGTTCCCTTTAGTGAGGG 3' Mutagenesis primer ' GTCTGATCTCTACGGTTCCCTTTAGTGAGGG 3' b. deletion of the EcoRI site of pEDGARl2 and introduction of an Sphl site downstream of the IBDV sequence; Original sequence: EcoRI ' CGACTCACTATAGGGCGAATTCCCCCCAGCGACCGTAACGACTG 3' <- IBDV Mutagenesis primer Sphl ' CGACTCACTATAGGGCGGATCCCGCATGCCCCAGCGACCGTAACGACTG 3' <- IBDV 3. Construction of pACEDGARMl2: Insertion of the Bcll-Sphl fragment of pEDGARMl2 into the Bcll-Sphl sites of pACYC184 4. Construction of pEDGARM34i by site-directed mutagenesis on pEDGAR34i: Replacement of the Sphl site by an Nsil site; - 44 IE 921686 Sphl Original sequence: 5' GCTCGAAGTTGCTCAGGCATGCAAGCTTTTG 3' IBDV -> mutagenesis Nsil primer 5' GCTCGAAGTTGCTCATGCATGCAAGCTTTTG 3' IBDV -> . Construction of PEDGAR45: pBS3A (Hinc2 + Pstl) + Hinc2-Pst1 fragment of pEDGAR34i 6. Construction of pACEDGAR!4: pACEDGARMl2 (Sphl + T4 DNA polymerase, BamHI) + pEDGARM34i (Nsil + T4 DNA polymerase, BamHI) 7. Construction of pACEDGARl5: pACEDGARl4 IBamH1 + T4 DNA polymerase, Sail) + pEDGAR45 (Pvu2-Sall) 8. Construction of pACEDGARl: pACEDGAR15 (Sphl + EcoRV) + pBS3B (Sphl + Pvu2).
This plasmid contains the complete sequence of 0RF1 of the segment A on the Bcll-BamHl fragment. 9. Construction of pBSIBDVOb by site-directed muta20 genesis of pBSIBDVO: Introduction of ORF3 into pBSIBDVO which carries the beginning of ORF1 and ORF2; Original sequence: pBSPlus -> —ORF2—> ' CCCGGGGATCCTCTAGAGTCCCTCCTTCTACAACGTGATCATTGATGG 3' Bell Mutagenesis primer: --ORF2--> pBSPlus -> ..............ORF3.............> ' CCCGGGGATCCTCTAGAGTCTGATCAGGATGGAACTCCTCCTTCTACAACGCTATCATTGATGG 3 Bell . Construction of PACEDGAR2 and PACEDGAR3: The plasmids pACEDGAR2 and pACEDGAR3 were obtained by replacing the Bcll-Rsr2 region of the plasmid pACEDGARl with the Bcll-Rsr2 fragment of the plasmids pBSIBDVO and pBSIBDVOb respectively.
The 3 plasmids pACEDGARl, pACEDGAR2 and pACEDGAR3 therefore enable ORF1, ORF1-ORF2 and ORF1-ORF2-ORF3, - 45 respectively, of the segment A of the EDGAR strain, to be isolated on a Be11-BamHI fragment.
The sequences of these 3 plasmids, on the ATG side of the ORFs, are represented below: Bell pACEDGARl: 5' TGATCACAGCGATGACA ... 3' - - -0RF1----> Bell pACEDGAR2: 5' TGATCATTGATGGTTAGTAGAGATCAGACAAACCATCGCAGCGATGACA ... 3' ...........-.......ORF2......................> - --0RF1----> Bell pACEDGAR3: 5' TGATCAGGATGGAACTCCTCCTTCTACAACGCTATCATTGATGGTTAGT ... 3' .............-ORF3--------------> ......ORF2.....> Stage 3 These Be11-BamHI fragments were then cloned into the BamHI site of the plasmid p2P75, thus generating the plasmids p75EDGARl, p75EDGAR2 and p75EDGAR3 and placing the coding sequence(s) of the segment A under the control of the promoter P7.5.
These coding sequences were also placed under the control of the promoter Pll. The Be 11-BamHI fragment of the plasmid pACPll, carrying the promoter Pll, was inserted into the BamHI site of the plasmids pACEDGARl, pACEDGAR2 and pACEDGAR3 so as to generate the plasmids pllEDGARl, pllEDGAR2 and pllEDGAR3 respectively.
Bell-BamHI cassettes, P75-EDGAR or Pll-EDGAR, were isolated from these different plasmids and inserted into the BamHI site of the plasmid pTIRBl, thus producing the plasmids pTIR75EDGARl, pTIR75EDGAR2, pTIR75EDGAR3, pTIRl1EDGAR1, pTIRHEDGAR2 and pTIRllEDGAR3. The orientation of these Bell-BamHI cassettes inside the plasmid pTIRBl, which was conserved, is such that the direction of transcription, initiated from the promoters P7.5 and Pll, coincides with that of ORF1 and ORF2 which are present inside the plasmid pTIRBl. - 46 The Bql2-BamHl fragment of the plasmid pACPllLAC, carrying the Pll-LACZ cassette, was inserted into the BamHI site of the plasmids pTIR75EDGARl and pTIR75EDGAR2 so as to generate the plasmids pTIR75ElLAC and pTIR75E2LAC respectively. The orientation of Pll-LACZ inside these plasmids is such that the direction of transcription of the LACZ gene coincides with that of 0RF1 and 0RF2 .
In a similar manner, the plasmids pTIRllElLAC, 10 pTIRllE2LAC and pTIRllE3LAC were generated by insertion of the p75-LACZ cassette, isolated in the form of a Bql2-BamHI fragment of the plasmid p75LAC, into the BamHI site of the plasmids pTIRllEDGARl, pTIRllEDGAR2 and pTIRllEDGAR3 respectively.
Finally, the plasmid pTIRllVP2LAC was generated by inserting the Xhol (treated with T4 DNA polymerase ) -Bgl2 fragment of the plasmid pllEDGARl, into the PpuMl (treated with T4 DNA polymerase) and Bql2 sites of the plasmid pTIRllElLAC. The transfer plasmid pTIRllVP2LAC contains, under the control of the promoter Pll, the complete sequence of the protein VP2 as well as the amino-terminal part of the protein VP4; by virtue of the construction, the last three amino acids (Asp, Leu and Glu; carboxy-terminal part of VP3) and the stop codon for translation (TGA) of the polyprotein are fused in phase. It can be seen in Figure 9 that this heterologous protein therefore corresponds to a part of the polyprotein containing the amino acids 1 to 493, followed by the amino acids 1010 to 1012, in which the protein VP2 is included.
By way of example, the plasmid pTIR75ElLAC is represented in Figure 11.
Stage 4 and stage 5 The recombinant Fowlpox viruses, in which the 35 ORFs of the EDGAR strain have been integrated, were isolated, purified and characterised according to the methods described in Examples 9, 10, 11, 12, 13 and 14.
The notation of the recombinant viruses is: - 47 IE 921686 Vll = P7.5E1 V14 = P11E1 V17 = P11VP2 V12 = P7.5E2 V15 = P11E2 V16 = P11E3 The primers used for selecting the double recombinant TIRs by PCR, differentiate the WT TIRs and the TIRs containing LacZ, El, E2, E3 or VP2. The combinations of primers and the size of the amplified fragments are given in the table below.
The primers IBDV16, 3, lb and 22 hybridise to IBDV. The primers IBDV16, lb and 3 hybridise to the coding part of VP2. The primer IBDV22 hybridises to the coding part of VP3 and therefore not to the V17 genome. The primers 5168 and 5169 hybridise to FPV. The primer 1871 hybridises to the /3-galactosidase gene. The sequence of these primers is defined in the table List and sequences of the primers.
Primers Virus Fragments (nt) 5169 + 5168 WT 220 recombinants 6.0 kb 5169 + 1871 V8 310 recombinants 3.6 kb 5169 + IBDV16 Vll 341 V14, V17 339 V12 373 V15 371 V16 402 5169 + IBDVlb V17 766 IBDV22 + 1871 Vll, V12 379 V14, V15, V16 479 V17 — IBDV3 + 1871 V14, V15, V16 2280 Stage 6 V17 732 The expression of the IBDV antigens of recombinant viruses inside the QT35 cells was compared. - 48 The antibodies used, which were raised against the IBDV strain Cu-1, were kindly provided by Professor H. Muller, Institiit fur virologie, Justus-LiebigUniversitat, Giessen, Germany.
They are: 1, a polyclonal serum (No. B22) of a rabbit which was hyperimmunised against the Cu-1 strain 2, an anti-VP3 mouse monoclonal antibody (No. I/A10) which recognises the protein VP3 in native and denatured form 3, an anti-VP2 mouse monoclonal antibody (No. Bl) which recognises a conformational epitope of the protein VP 2; the Bl antibody is an antibody which is capable of neutra15 Using the viral strain Cu-1. a. Experimental conditions for the infection On day D=l, 2.5 x 105 QT35 cells are inoculated, per 25-cm2 flask, into 5 ml of growth media (composition described in Example 1). Eight flasks are prepared.
On day D=2, the cells are infected at a multiplicity of infection of 0.01 virus per cell with each recombinant virus, Vll, V12, V14, V15, V16, V17, V8 (negative control) and IBDV (bursine strain 2, positive control).
On day D=5, the infected cells are harvested and [lacuna] the media after freezing followed by thawing. b. Analysis of the expression products by sandwich type ELISA The ELISA test is carried out using, as first antibody, the polyclonal antibody B22 and, as second antibody, either the anti-VP3 monoclonal antibody (No. I/A10) or the anti-VP2 neutralising monoclonal antibody (No. Bl). The ELISA curves are presented in Figure 12A for anti-VP3, and in Figure 12B for anti-VP2.
The results of these analyses show that: 1 - Figure 12A: the protein VP3 is expressed in all the recombinants (Vll, V12, V14, V15 and V16), which contain at least the seguence encoding the polyprotein (ORFl, VP2-VP4-VP3 proteins), but not in the recombinant - 49 V17 since it contains only the region encoding VP2 and the amino-terminal part of VP4, nor in the recombinant V8 since it contains no IBDV sequence.
The level of expression of the protein VP3 is 5 lower in the recombinants VI1 and V12 than in the recombinants V14, V15 and V16, which is probably correlated with the strength of the promoters which are present in the various recombinants: the activity of the promoter p7.5 (recombinants VI1 and V12) being less strong than that of the promoter pll (recombinants V14, V15 and V16) (see Example 15).
No difference is observed in the level of expression of VP3 as a function of the reading frames of the segment A, which are introduced into the various recombi15 nants: ORFl for the recombinants VI1 and V14, ORF1 + ORF2 for the recombinants V12 and V15 and ORFl + ORF2 + ORF3 for the recombinant V16.
- Figure 12B: the protein VP2 is expressed in all the recombinants except for V8 which does not contain IBDV sequences.
The level of expression is highest for the recombinant V17; in this case, it is close to that of the protein VP2 which is expressed in the cells infected by the IBDV virus.
A correlation is again oberved between the strength of the promoters present in the various recombinants and the level of expression of the protein VP2.
These results show, on the one hand, that the epitope of the protein VP2 which is recognised by the neutralising antibody Bl raised against the strain Cu-1, is also present in the protein VP2 of the American strain Edgar, and on the other hand, that the original conformation of the protein VP2 is preserved, at least in this region, in all the recombinants. c. Analysis of the expressidon products bv Western blotting Western blot analysis of the proteins produced by the various recombinants was carried out, on the one - 50 hand, using the polyclonal serum (B22) which recognises all of the IBDV proteins and, on the other hand, using the anti-VP3 monoclonal antibody (I/A10).
The results, which are illustrated in Figure 13A, 5 show that the polyclonal serum recognises, in the extracts of the cells infected by IBDV, essentially 3 proteins corresponding to VP2 (~ 40 kd) , VP3 (- 32 kd) and VP4 (- 28 kd). A protein of about 46 kd can also be observed and it may constitute the VP2 precursor (VPX, - 48-49 kd).
For all the recombinants (Vll, V12, V14, V15 and V16), which contain at least the sequence encoding the polyprotein (ORFl, VP2-VP3-VP4), proteins with a molecular weight (MW) corresponding to VP3, VP4 and probably VPX respectively are detected with the anti-IBDV polyclonal serum (Figure 13A). For the recombinant V17, only one protein, whose molecular weight is close to that of the fusion protein VP2 + amino-terminal region of VP4 (- 52 kd), is detected.
The anti-VP3 monoclonal antibody (Figure 13B) , recognises essentially two proteins, VP3 and probably a degradation product of VP3, in the cells infected by IBDV and all the recombinants expressing the polyprotein. No IBDV protein is recognised in the recombinant V17 expres25 sing the fusion protein VP2-VP4.
All these results indicate that the reading frame encoding the polyprotein (ORFl) is translated in all the recombinants irrespective of the presence of the additional reading frames ORF2 (recombinants V12 and V15) or ORF2 and ORF3 (recombinant V16) . The cleavage of the precursor polyprotein is carried out accurately but appears to be incomplete in the case of VP2; it has been suggested that the complete maturation of the precursor VPX would take place during or after transportation of the IBDV viral particles to the surface of the cells (Muller et al., 1982). - 51 IE 921686 Stage 7 The vaccinating power of the recombinants FPV/IBDV is tested, a. Seroconversion with Vll A first vaccination campaign with a recombinant FPV/IBDV compared the seroconversion against /3-galactosidase and against the IBDV virus for three different administration routes: by the intramuscular route (IM), by the subcutaneous route (SC) and by piercing the wing (WW or wing web).
One-day-old chicks are vaccinated with 104'4 Vll recombinant viruses using the three administration routes, IM, SC or WW. They are killed by euthanasia 11 days later.
Analysis of the sera by direct ELISA showed that 2/14 (14%) of the chicks vaccinated by the intramuscular route, 3/6 (50%) of the chicks vaccinated by the subcutaneous route and 8/15 (53%) of the chicks vaccinated by transpiercing the wing, had antibodies against 0-galactosidase, while 5/14 (36%) of the chicks vaccinated by the intramuscular route, 1/6 (17%) of the chicks vaccinated by the subcutaneous route and 1/15 (7%) of the chicks vaccinated by transpiercing the wing, had antibodies against the IBDV virus.
In conclusion, the IBDV proteins are expressed by the recombinant FPV/IBDVll in the vaccinated and they induce an antibody response in a few chicks. Of the three administration routes, the intramuscular route induces a higher response than the other two. b. Early protection with Vll, V15 and V16 One-day-old chicks received a dose of 104'4 V8 (negative control), Vll, V15 or V16 virus by the intramuscular route and were challenged 10 days later with 100 LD50 (100 times the lethal dose) of the virus 849VB administered by the ocular route. The 849VB strain is described by Van Den Berg et al., 1991.
The chicks are killed by euthanasia 20 days later. - 52 The ratio, multiplied by 100, between the weight of the bursa and the total weight is a protection index.
In the control group, which is vaccinated with V8 and not subjected to the IBDV challenge, this ratio is 0.57 (mean for 10 chicks).
In the V8 group subjected to the challenge, this ratio becomes 0.11 (9 chicks).
In the chicks vaccinated with Vll, V15 and V16, these ratios are 0.11 (20 chicks), 0.12 (18 chicks) and 0.12 (18 chicks) respectively.
On the basis of this criterion, there is no early protection against the IBDV virus by the recombinants Vll, V15 and V16. c. Late protection with Vll, V15 and V16 Chicks vaccinated with V8, Vll, V15 and V16, as described in the preceding section, were subjected to the IBDV challenge 42 days after the injection.
The sera collected before the challenge are analysed by the ELISA method in order to evaluate the antibody response against /9-galactosidase and the IBDV virus.
The anti-/3-galactosidase response shows that 100% seroconversion is obtained in all the vaccinated chicks, that is to say 70 chicks in total. The titres range from 1:200 to 1:51,200. There is no significant difference between the titres obtained with Vll, whose LacZ gene is under the control of P7.5, and V8, V15 and V16, whose LacZ genes are under the control of the promoter Pll.
The anti-IBDV response in the 10 chicks vac30 cinated with V8 is zero; it is positive in all the chicks vaccinated with Vll, V15 and V16. In detail, the titres of the responses in the 20 chicks vaccinated with Vll range from 1:800 to 1:51,200, with a mean of 1:6,400. They are from 1:6,400 to 1: 102,400, with a mean of 1:25,600 for the 20 chicks vaccinated with V15. They are between 1:6,400 and 1:204,800, with a mean of 1:25,600 in the 20 chicks vaccinated with V16. The antibody levels are substantially higher for the groups vaccinated with V15 or V16 than for those vaccinated with VI1.
The seroneutralisation titres for the vaccinal strain PBG68, adapted to cultured cells, are 1:10 for Vll, as negative control; 4 sera out of 20 for V15 and 1 serum out of 20 for V16 have seroneutralisation titres of 1:20. This titre is therefore low and is observed in only a few of the animals.
The ratio (weight of bursas/total weight) x 100 has a mean of 0.66 in the unchallenged V8 control group (10 chicks).
It becomes 0.1 in the challenged group V8 (1 survival).It is 0.1, 0.11, 0.11 for the three groups Vll (3 chicks), V15 (11 chicks) and V16 (8 chicks) respectively. There is no protection against atrophy of the bursas.
The mortality during the four days which followed the challenge was almost total for the control group (9 chicks out of 10). In the group Vll, 3 chicks out of 20 survived while 11 chicks out of 20 which were vaccinated with V15 and 8 chicks out of 20 which were vaccinated with V16 survived. A protection of the order of 50% of the animals vaccinated with V15 or V16 is therefore observed. d. Protection with V14, V15 and V17 Four groups of three-week old poultry received 0.2 ml of the recombinant viruses V8 (negative control), V14, V15 or V17. The amount of virus per chicken was 105,4 TCID50. The administration route is intramuscular.
Twenty-one days later, serum is collected from each animal in order to evaluate the anti-IBDV antibody titre. One hundred times the lethal dose of IBDV is injected into the animals of groups V14, V15 and V17 and into some of the animals of the group V8 (that is to say the group of poultry which received the recombinant virus V8). days later, that is to say 32 days after the vaccination, the control animals of the group V8 and those which survived the challenge, are killed by - 54 euthanasia and the ratio (weight of the bursas/weight of the poultry) x 100 is determined.
The results are: Mortality: the number of poultry animals which 5 succumbed to the challenge can be divided as follows: for V8: 12 poultry animals/14 (85%), for V14: 21/24 (87%), for V15: 17/25 (68%) and for V17: 0/25 (0%).
In other words, all the poultry vaccinated with the recombinant V17 resisted the challenge. The protection is total in this group. Furthermore, none of the poultry showed the slightest clinical sign of disease. The 32% protection obtained with the recombinant V15 is close to the 50% protection obtained in the preceding experiment.
- ELISA: the mean titres estimated against the virus are: for V8, titres less than 1:100 and considered as negative; for V14, titres of 1:12800 (from 1:6400 to 1:51200), for V15, titres of 1:6400 (from 1:800 to 1:25600), for V17, titres less than 1:100 except for 3 poultry animals (1:800, 1:6400 and 1:51200).
Consequently, the antibody response against IBDV, which is induced by the expression of the polyprotein of the recombinant FPV/IBDV, is very high. In contrast, the response against the complete virus, which is induced by V17, is low.
Seroneutralisation: the seroneutralisation titres against the PBG68 strain have a mean value of: for V8, V14 and V15, titres less than 1:10 and considered as negative; for V17, 5 poultry animals out of 20 have a titre above 1:20, that is to say, in detail, a titre of 1:20 (twice), 1:40, 1:80 and 1:320.
Consequently, a seroneutralisation is observed only in the sera of poultry which were vaccinated with V17.
- Bursas: the mean of the ratio (weight of the bursas/total weight) x 100 is as follows: for unchallenged V8, a ratio of 0.68 (± 0.13), for challenged V8, a ratio of 0.09 (± 0.01), for V14, a ratio of 0.10 (± - 55 0.02), for V15, a ratio of 0.13 (± 0.04) and for V17, a ratio of 0.34 (± 0.23).
Consequently, a partial protection of the bursas of Fabricius is observed only in the group V17. Indeed, 8 poultry animals out of 24 have a ratio which is similar to that of the unchallenged controls. The other sixteen have a higher ratio than the challenged controls. Conclusions The main conclusions of these vaccination 10 campaigns are: The recombinants which express the IBDV polyprotein induce a strong ELISA response in poultry, with high titres against the virus.
The recombinant which expresses the VP2 portion of 15 the polyprotein completely protects the poultry against mortality and partially protects them against atrophy of the bursa. - 56 IE 921686 List of the plasmids Name Characteristics Vectors for cloning into E. coli pUC18 Cloning vector (Messing 1983) pBSPlus Cloning vector (Stratagene) pBSLKl pBSPlus with a Bell and Bgl2 site inside the polylinker pBSLK2 Identical to pBSLKl but the Bell and Bgl2 sites are in the inverse order pACYC184 Cloning vector (Chang, 1978) Vaccinia promoters pGS20 Transfer vector for Vaccinia (Mackett 1984) plP75 pBSLKl + Bcll-BamHl fragment of pGS20 with the Vaccinia promoter P7.5 inside Bcll-BamHl p2P75 plPll p2Pll pACPll LacZ gene pBSMutLacZl Identical to P1P75 but inside pBSLK2 pBSLKl + 40-mer synthetic DNA with the Vaccinia promoter Pll inside Bgl2-BamHI Identical to plPll but inside pBSLK2 Identical to plPll but inside Xho2-BamHI of pACYC184 LacZ in a Bgl2-BamHl pBSPlus with cassette p751ac p2P75 + Bgl2-BamHl cassette with LacZ in Bgl2-BamHl pllLac Identical to p75Lac but in p2Pll pACPllLac pACYCl84 + Pll-Lac cassette in a Bgl2Hind3 fragment of pllLac in Xho2-Hind3 Transfer vectors for CNP pTIRl pUC18 with the EcoRI TIR-L fragment of CNP. The fragment which separates the BamHI sites of the pUC18 linker of the CNP BamHI was deleted. pTIRBl Insertion of a BamHI into pTIRl, between ORFl and ORF2. - 57 pTIRB2 Identical to pTIRBl but between 0RF2 and 0RF3. pTIRBID Identical to pTIRBl, but deletion of the EcoRl-Hpal fragment.
Transfer vectors with LacZ pTIRBlP75Lac pTIRBl + P75-Lac cassette of p75Lac in a Bql2-BamHl fragment cloned into BamHI. pTIRB2P75Lac As above but inside pTIRB2 10 pTIRB2LacP75 As above but in the opposite orientation pTIRBIPllLac pTIRBl + Pll-Lac cassette of pllLac in a Bql2-BamHI fragment cloned into BamHI pTIRBlLacPll As above but in the opposite orienta- 15 tion pTIRB2LacPll As above but inside pTIRB2 Plasmids which carry the E2 of IBV p75M41 E2 gene of the serotype M41, cloned downstream of P7.5 20 p75Dl466 As above but of the serotype D1466 p75D207 As above but of the serotype D207/D274 Transfer vectors with the E2 of IBV pTIRBlP75M41Lac P7.5-E2 cassettes of M41 and Pll-Lac cloned into the BamHI site of TIRB1. 25 pTIRBlP75D1466Lac As above but E2 of D1466. pTIRBlP75D207Lac As above but E2 of D207/D274. Plasmids which carrv the TA4 of Eimeria pTA406 cDNA of the TA4 antigen of Eimeria tenella cloned into a BamHI cassette 30 pTA410 As above but the proteolytic site is different p75TA406 TA406 gene cloned downstream of P7.5 p75TA410 As above but TA410 gene pTIRTA406 P7.5-TA406 cassette cloned into BamHI 35 pTIRTA410 of pTIRBID As above but P7.5-TA410 cassette Transfer vectors with the TA4 of Eimeria pTIRTA406Lac PllLac cassette cloned into pTIRTA406 pTIRTA410Lac - 58 - As above but inside pTIRTA410 Flasmids for the cloning of IBDV pBSIBDVO pBSPlus (Pstl-Hinc2), this work + 277-bp Pstl fragment of the fragment 5 EDGAR 0-lb obtained by PCR. pBSIBDVOb Derived from pBSIBDVO by site-directed pBS1A2 mutagenesis pBSLKl (Pstl + T4 DNA polymerase, Sacl) + 760-bp Sacl fragment of the fragment 10 EDGAR 1-2 obtained by PCR. pBSlB pBSLKl (Pstl + T4 DNA polymerase, Sacl) + 369-bp Sacl fragment of the fragment EDGAR 1-2 obtained by PCR. pEDGAR34i 15 pBSLKl (Pstl + T4 DNA polymerase, Hinc2) + 670-bp EDGAR 3-4 fragment pEDGARM341 obtained by PCR. Derived from pEDGAR34i by site-directed pBS3A 20 mutagenesis pBSLKl (Pstl + T4 DNA polymerase, Sphl) + 956-bp Sphl fragment of the fragment EDGAR 5-6 obtained by PCR. pBS3B pBSLKl (Pstl + T4 DNA polymerase, Sphl) + 345-bp Sphl fragment of the fragment EDGAR 5-6 obtained by PCR. 25 pEDGARl2 pBSlA2 (EcoRI + T4 DNA polymerase, Sacl) + pBSlB fragment (Sphl + T4 DNA PEDGARM12 polymerase, Sacl) Derived from pEDGARl2 by site-directed 30 pACEDGARM12 mutagenesis Insertion of the Bcll-Sphl fragment of pEDGARMl2 into the Bcll-Sphl sites of pEDGAR45 pACYC184 pBS3A (Hinc2-Pstl) + Hinc2-Pstl frag- 35 pACEDGAR14 ment of pEDGAR34i PACEDGARM12 (Sphl + T4 DNA polymerase, BamHl) + pEDGARM34i fragment (Nsil + T4 DNA polymerase, BamHl) pACEDGAR15 pACEDGAR pACEDGAR2 pACEDGAR3 Plasmids with p75EDGARl p75EDGAR2 p75EDGAR3 pllEDGARl pllEDGAR2 pllEDGAR3 pACEDGARl4 (BamHI + T4 DNA polymerase, Sail) + pEDGAR45 fragment (Pvu2-Sall) PACEDGAR15 (Sphl-EcoRV) + pBS3B fragment (Sphl-Pvu2) Replacement of the Bcll-Rsr2 fragment of pACEDGARl by the Bcll-Rsr2 fragment of pBSIBDVO Identical to the Bcll-Rsr2 fragment of pBSIBDVOb IBDV and a Vaccinia promoter Bcll-BamHl fragment of pACEDGARl inserted into the BamHI site of p2P75 Identical to the Bcll-BamHl fragment of pACEDGAR2 Identical to the Bcll-BamHl fragment of pACEDGAR3 Bcll-BamHl fragment carrying Pll of pACPll inserted into the BamHI site of pACEDGARl As above but inside the plasmid pACEDGAR2 As above but inside the plasmid pACEDGAR3 Transfer vectors with IBDV alone pTIR75EDGARl pTIR75EDGAR2 pTIR75EDGAR3 pTIRHEDGARl pTIRHEDGAR2 pTIRHEDGAR3 Transfer vectors Bcll-BamHl fragment of p75EDGARl inserted into the BamHI site of pTIRBl Identical to Identical to Identical to Identical to Identical to with IBDV and the plasmid the plasmid the plasmid the plasmid the plasmid Lac p75EDGAR2 p75EDGAR3 pllEDGARl pllEDGAR2 pllEDGAR3 PTIR75E1LAC pTIR75E2LAC pTIRHElLAC Bgl2-BamHl fragment of pACPllLAC inserted into the BamHI site of pTIR75EDGARl Identical to the plasmid pTIR75EDGAR2 Bgl2-BamHl fragment of p75LAC inserted into the BamHI site of pTIRHEDGARl pTIRl1E2LAC pTIRHE3LAC pTIRl1VP2LAC - 60 Identical to the plasmid pTIRl1EDGAR2 Identical to the plasmid pTIRllEDGAR3 Xhol (T4 DNA polymerase)-Bgl2 fragment of pllEDGARl cloned into the PpuMl (T4 DNA polymerase)-Bgl2 sites of pTIRlIE1LAC -61 REFERENCES - Bayliss C.D., Spies U., Shaw K., Peters R.W., Papageorgiou A., Muller H. and Boursnell M.E.G., J. gen. Virology 71, 1303-1312 (1990).
- Becht H., Muller H. and Muller H.K., J. gen. Virology 69, 631-640 (1988).
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- Cavanagh, D. et al. 1988. Virus research, 11:141-150.
- Chang, A.C.Y. et Cohen, S.N. 1978. J. Bacteriol. 134:1141-1156 - Cho B.R., Avian Diseases vol. 25, n° 4, 839-846 (1981).
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- Mackett et al, 1985. DNA cloning. A practical approach, Vol. 2, 191-211.
- Maniatis, T., E.F. Fritisch, and J. Sambrook. 1982. Molecular cloning : a laboratory manual. Cold Spring Harbor Laboratory, Cold Spring Harbor, N.Y.
- Messing, J. 1983. Methods Enzymol. 101:20-78. -62 - Moss, B. 1990. Annu. Rev. Biochem. 59:661-88.
- Muller H. and Becht H., 1982. Journal of Virology 44 (1), 384-392 - Spehner et al, 1990. J. of Virol., 64:527-533.
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- Venkatesan et al, 1981. Cell, 125, 805-813. _ Van Den Berg, Gonze et Meulemans, 1991. Avian Pathology, 20, 133-143 XXX - 63 List of organisms Name Characteristics 1. E. COLI BACTERIA MC1061 JM1110 araDl39, (ara, leu)7697, lacX74, qalU, qalK, hsdR, strA (Pharmacia) Used for its dam- phenotype (N3837dam4) 2. CNP VIRUS LVCO Standard Fowlpox challenge strain of the 10 CNP USDA. Fowlpox vaccinal strain (SOLVAY) V3 Recombinant CNP virus with the P7.5-LacZ V4 cassette in TIRB1 Identical to V3, but the cassette is in 15 V5 TIRB2 Identical to V4, but the cassette is in V8 the opposite orientation Identical to V3, but the cassette is V9 Pll-Lac Identical to V8, but the cassette is in 20 V10 the opposite orientation Identical to V9, but the cassette is in 3. IBDV VIRUS EDGAR TIRB2 EDGAR strain, American isolate from S.A. 25 EDGAR, Auburn University, propagated 3 849VB times on chicken and once on embryonic eggs. USDA standard challenge. Pathogenic strain described by Van Den 30 PBG98 Berg et al., 1991. Strain adapted to CEF cells. Bursine2 4. CELLS QT35 CEF Vaccinal strain adapted to QT35 cells. Quail cell line. Chicken embryo fibroblasts . CNP/IBD VIRUS Vll Carries the V12 Carries the V14 Carries the V15 Carries the V16 Carries the V17 Carries the 64 - cassettes PllLac and P7.5E1 cassettes PllLac and P7.5E2 cassettes P7.5E1 and PllLac cassettes P7.5E2 and PllLac cassettes P7.5E3 anbd PllLac cassettes P7.5VP2 and PllLac 6. CNP/TA4 VIRUS V21 Carries the cassettes PllLac and P7.5TA410 - 65 LIST AND SEQUENCES OF THE PRIMERS Number Sequence from 5' to 3' Complementary to 5169 5 ' CCTTTACTGTTAGTTCTACAATCGAAATTATGC 3' FPV 5168 5 ' CATGTAGATTTTAATCCGTTAACACGCGCAG 3' FPV 3254 5' GCCGGAAAACCTACCGGATTGATGG 3' Lac 1871 5' GAAACCAGGCAAAGCGCC 3' Lac IBDV16 5' CCAGGGTGTCGTCCGGAATGG 3' IBDV 10 IBDVlb 5 ' CCCAAGATCATATGATGTGGGTAAGCTGAGG 3' IBDV IBDV3 5' TGAGCAACTTCGAGCTGATCCCAAATCCTG 3' IBDV IBDV22 5' CTGCTCTTGACTGCGATGGAG 3' IBDV

Claims (10)

1. Recombinant Avipox virus derived from an attenuated strain of Avipox virus and containing, in a nonessential part of its genome, at least one DNA
2. Virus according to Claim 1, characterised in that it is derived from an attenuated strain of Fowlpox virus. 15
3. Virus according to Claim 1 or 2, characterised in that the nonessential part is composed of an intergenic region having a sequence of more than 60 nucleotides.
4. Virus according to any one of Claims 1 to 3, characterised in that the intergenic region is situated 20 in one of the two TIR regions of the virus. 5. Substantially as herein described. 21. Vaccine containing a recombinant Avipox Virus substantially as herein described by way of example. 5 Newcastle disease virus (NDV) and the Marek's disease virus (MDV). 10. Virus according to Claim 9, characterised in that the heterologous protein is chosen from the antigens of the infectious bursal disease virus (IBDV), the 10 infectious bronchitis virus (IBV), the virus responsible for chicken anaemia (CAV) and the protozoa Eimeria. 11. Virus according to Claim 10, characterised in that the heterologous protein is chosen from all or part of the open reading frames comprising polyprotein and 15 parts of polyprotein for IBDV, the antigen E2 for IBV, the surface antigen TA4 for Eimeria and the protein P50 for CAV. 12. Virus according to Claim 11, characterised in that the heterologous protein is part of the polyprotein 20 containing the amino acids 1 to 493 followed by the amino acids 1010 to 1012. 13. Culture of eukaryotic cells which are infected with a recombinant Avipox virus according to any one of Claims 1 to 12. 25 14. Culture of cells according to Claim 13, characterised in that it relates to fowl cells. 15. Vaccine characterised in that it contains an Avipox virus according to any one of Claims 1 to 12. 16. Use of an Avipox virus according to any one of 30 Claims 1 to 12 as a vector which is capable of expressing all or part of a protein which is heterologous with respect to the virus. 17. Transfer sequence which enables a DNA sequence, encoding all or part of a heterologous protein, to be 35 inserted into the genome of the Avipox virus according to any one of Claims 1 to 12. 18. Plasmid carrying a sequence according to Claim 17. - 68 19. Recombinant Avipox virus substantially as herein described by way of example. 20. Culture of cells infected with a recombinant Avipox virus,
5. Virus according to Claim 4, characterised in that at least one DNA sequence is cloned into the two TIR regions of the virus. 5 sequence encoding all or part of a protein which is heterologous with respect to the Avipox virus as well as the elements capable of ensuring the expression of this protein inside a cell infected by the said recombinant virus, characterised in that the nonessential part of the 10 genome is composed of a noncoding intergenic region situated between two open reading frames (ORF) including their expression signals.
6. Virus according to Claim 4 or 5, characterised in 25 that the intergenic region is the region, termed region /31, situated between the nucleotides 1675 and 2165, taking as starting nucleotide the BamHI restriction site present inside the TIRs.
7. Virus according to Claim 4 or 5, characterised in 30 that the intergenic region is the region, termed region β2, situated between the nucleotides 2672 and 3605, taking as starting nucleotide the BamHI restriction site present inside the TIRs.
8. Virus according to Claim 5 and 6, characterised 35 in that a DNA sequence is cloned into the /31 region, inside each of the two TIRs.
9. Virus according to any one of Claims 1 to 8, characterised in that the heterologous protein is chosen from the antigens of the infectious bursal disease virus (IBDV), the infectious bronchitis virus (IBV), the virus responsible for chicken anaemia (CAV), the protozoa Eimeria which is responsible for coccidiosis, the
10. 22. An expression vector capable of expressing all or part of a protein which is heterologous with respect to a recombinant Avipox virus, substantially as herein described and illustrated by way of example.
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TW288048B (en) 1996-10-11
DE69230627D1 (en) 2000-03-09
AU1632392A (en) 1992-12-03
EP0517292B1 (en) 2000-02-02
DE69230627T2 (en) 2000-09-28
HU215531B (en) 2000-05-28
JP3411307B2 (en) 2003-05-26
CN1069068A (en) 1993-02-17
CN1055501C (en) 2000-08-16
IL101780A0 (en) 1992-12-30
CA2069594A1 (en) 1992-11-28
ATE189480T1 (en) 2000-02-15
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HUT62331A (en) 1993-04-28
RU2130971C1 (en) 1999-05-27
NZ242620A (en) 1993-09-27
IL101780A (en) 2000-12-06
BR9202024A (en) 1993-01-19
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AR248045A1 (en) 1995-05-31
ES2145000T3 (en) 2000-07-01

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