GB2539596B - Sequence data analyzer, DNA analysis system and sequence data analysis method - Google Patents

Sequence data analyzer, DNA analysis system and sequence data analysis method Download PDF

Info

Publication number
GB2539596B
GB2539596B GB1616668.8A GB201616668A GB2539596B GB 2539596 B GB2539596 B GB 2539596B GB 201616668 A GB201616668 A GB 201616668A GB 2539596 B GB2539596 B GB 2539596B
Authority
GB
United Kingdom
Prior art keywords
sequence data
analysis method
analysis system
dna
analyzer
Prior art date
Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
Active
Application number
GB1616668.8A
Other languages
English (en)
Other versions
GB201616668D0 (en
GB2539596A (en
Inventor
Kimura Kouichi
Current Assignee (The listed assignees may be inaccurate. Google has not performed a legal analysis and makes no representation or warranty as to the accuracy of the list.)
Hitachi High Tech Corp
Original Assignee
Hitachi High Tech Corp
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Application filed by Hitachi High Tech Corp filed Critical Hitachi High Tech Corp
Publication of GB201616668D0 publication Critical patent/GB201616668D0/en
Publication of GB2539596A publication Critical patent/GB2539596A/en
Application granted granted Critical
Publication of GB2539596B publication Critical patent/GB2539596B/en
Active legal-status Critical Current
Anticipated expiration legal-status Critical

Links

Classifications

    • G—PHYSICS
    • G06—COMPUTING OR CALCULATING; COUNTING
    • G06F—ELECTRIC DIGITAL DATA PROCESSING
    • G06F16/00—Information retrieval; Database structures therefor; File system structures therefor
    • G06F16/30—Information retrieval; Database structures therefor; File system structures therefor of unstructured textual data
    • G06F16/33—Querying
    • G06F16/3331—Query processing
    • G06F16/334—Query execution
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B30/00—ICT specially adapted for sequence analysis involving nucleotides or amino acids

Landscapes

  • Engineering & Computer Science (AREA)
  • Physics & Mathematics (AREA)
  • Theoretical Computer Science (AREA)
  • Life Sciences & Earth Sciences (AREA)
  • Proteomics, Peptides & Aminoacids (AREA)
  • Medical Informatics (AREA)
  • Health & Medical Sciences (AREA)
  • Analytical Chemistry (AREA)
  • Bioinformatics & Cheminformatics (AREA)
  • Bioinformatics & Computational Biology (AREA)
  • Biotechnology (AREA)
  • Evolutionary Biology (AREA)
  • General Health & Medical Sciences (AREA)
  • Biophysics (AREA)
  • Spectroscopy & Molecular Physics (AREA)
  • Chemical & Material Sciences (AREA)
  • Computational Linguistics (AREA)
  • Data Mining & Analysis (AREA)
  • Databases & Information Systems (AREA)
  • General Engineering & Computer Science (AREA)
  • General Physics & Mathematics (AREA)
  • Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
  • Information Retrieval, Db Structures And Fs Structures Therefor (AREA)
GB1616668.8A 2014-04-03 2015-03-12 Sequence data analyzer, DNA analysis system and sequence data analysis method Active GB2539596B (en)

Applications Claiming Priority (2)

Application Number Priority Date Filing Date Title
JP2014077278A JP6198659B2 (ja) 2014-04-03 2014-04-03 配列データ解析装置、ｄｎａ解析システムおよび配列データ解析方法
PCT/JP2015/057348 WO2015151758A1 (ja) 2014-04-03 2015-03-12 配列データ解析装置、ｄｎａ解析システムおよび配列データ解析方法

Publications (3)

Publication Number Publication Date
GB201616668D0 GB201616668D0 (en) 2016-11-16
GB2539596A GB2539596A (en) 2016-12-21
GB2539596B true GB2539596B (en) 2021-03-17

Family

ID=54240090

Family Applications (1)

Application Number Title Priority Date Filing Date
GB1616668.8A Active GB2539596B (en) 2014-04-03 2015-03-12 Sequence data analyzer, DNA analysis system and sequence data analysis method

Country Status (6)

Country Link
US (1) US10810239B2 (https=)
JP (1) JP6198659B2 (https=)
CN (1) CN106104541B (https=)
DE (1) DE112015001637T5 (https=)
GB (1) GB2539596B (https=)
WO (1) WO2015151758A1 (https=)

Families Citing this family (10)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US10395759B2 (en) 2015-05-18 2019-08-27 Regeneron Pharmaceuticals, Inc. Methods and systems for copy number variant detection
US12071669B2 (en) 2016-02-12 2024-08-27 Regeneron Pharmaceuticals, Inc. Methods and systems for detection of abnormal karyotypes
JP6653628B2 (ja) * 2016-06-16 2020-02-26 株式会社日立製作所 Ｄｎａ配列解析装置、ｄｎａ配列解析方法及びｄｎａ配列解析システム
CN106446537B (zh) * 2016-09-18 2018-07-10 北京百度网讯科技有限公司 结构体变异检测的方法、设备及系统
US20220199199A1 (en) * 2019-02-07 2022-06-23 Biokey Bv Biological sequence information handling
WO2021134574A1 (zh) * 2019-12-31 2021-07-08 深圳华大智造科技有限公司 创建基因突变词典及利用基因突变词典压缩基因组数据的方法和装置
CN111782609B (zh) * 2020-05-22 2023-10-13 北京和瑞精湛医学检验实验室有限公司 一种快速将fastq文件均匀分片的方法
WO2022054178A1 (ja) * 2020-09-09 2022-03-17 株式会社日立ハイテク 個体ゲノムの構造変異検出方法及び装置
KR102265937B1 (ko) * 2020-12-21 2021-06-17 주식회사 모비젠 시퀀스데이터의 분석 방법 및 그 장치
CN114550828B (zh) * 2022-01-28 2024-12-10 赛纳生物科技(北京)有限公司 一种基因序列的比对方法

Citations (3)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
JP2008547080A (ja) * 2005-06-14 2008-12-25 エイジェンシー・フォー・サイエンス，テクノロジー・アンド・リサーチ ダイタグ配列の処理および／またはゲノムマッピングの方法
JP2009116559A (ja) * 2007-11-06 2009-05-28 Hitachi Ltd 大量配列の一括検索方法及び検索システム
JP2014502513A (ja) * 2011-01-14 2014-02-03 キージーン・エン・フェー ペアエンドランダムシーケンスに基づく遺伝子型解析

Family Cites Families (2)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
AUPS115502A0 (en) * 2002-03-18 2002-04-18 Diatech Pty Ltd Assessing data sets
JP5985040B2 (ja) 2013-02-28 2016-09-06 株式会社日立ハイテクノロジーズ データ解析装置、及びその方法

Patent Citations (3)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
JP2008547080A (ja) * 2005-06-14 2008-12-25 エイジェンシー・フォー・サイエンス，テクノロジー・アンド・リサーチ ダイタグ配列の処理および／またはゲノムマッピングの方法
JP2009116559A (ja) * 2007-11-06 2009-05-28 Hitachi Ltd 大量配列の一括検索方法及び検索システム
JP2014502513A (ja) * 2011-01-14 2014-02-03 キージーン・エン・フェー ペアエンドランダムシーケンスに基づく遺伝子型解析

Non-Patent Citations (3)

* Cited by examiner, † Cited by third party
Title
DANIEL AIRD, MICHAEL G ROSS, WEI-SHENG CHEN, MAXWELL DANIELSSON, TIMOTHY FENNELL, CARSTEN RUSS, DAVID B JAFFE, CHAD NUSBAUM, ANDRE: "Analyzing and minimizing PCR amplification bias in Illumina sequencing libraries", GENOME BIOLOGY, BIOMED CENTRAL LTD., vol. 12, no. 2, 1 January 2011 (2011-01-01), pages R18, XP055123443, ISSN: 14656906, DOI: 10.1186/gb-2011-12-2-r18 *
H. LI, B. HANDSAKER, A. WYSOKER, T. FENNELL, J. RUAN, N. HOMER, G. MARTH, G. ABECASIS, R. DURBIN: "The Sequence Alignment/Map format and SAMtools", BIOINFORMATICS, OXFORD UNIVERSITY PRESS , SURREY, GB, vol. 25, no. 16, 15 August 2009 (2009-08-15), GB, pages 2078 - 2079, XP055229864, ISSN: 1367-4803, DOI: 10.1093/bioinformatics/btp352 *
KOICHI KIMURA et al., "LOCALIZED SUFFIX ARRAY AND ITS APPLICATIONTO GENOME MAPPING PROBLEMS FOR PAIRED-ENDSHORT READS", Genome Informatics, (20091000), vol. 23, no. 1, PAGE 60 - 71 *

Also Published As

Publication number Publication date
DE112015001637T5 (de) 2017-02-09
WO2015151758A1 (ja) 2015-10-08
JP6198659B2 (ja) 2017-09-20
GB201616668D0 (en) 2016-11-16
GB2539596A (en) 2016-12-21
CN106104541A (zh) 2016-11-09
JP2015197899A (ja) 2015-11-09
US10810239B2 (en) 2020-10-20
US20170017717A1 (en) 2017-01-19
CN106104541B (zh) 2018-09-11

Similar Documents

Publication Publication Date Title
IL267424A (en) Methods and systems for analyzing nucleic acid molecules
IL259736A (en) Methods and systems for nucleic acid analysis
HUE049875T2 (hu) Mintavételi edény és mintavevõ rendszer, valamint ehhez tartozó üzemeltetési eljárás
IL258101A (en) Device and system for testing samples, especially blood, and methods for using them
EP3115959A4 (en) Data analysis system and method
EP3194627A4 (en) Methods and systems for analyzing nucleic acid sequencing data
GB2539596B (en) Sequence data analyzer, DNA analysis system and sequence data analysis method
SG11201706341RA (en) Systems and methods for biological analysis
GB201615387D0 (en) System, methods, and devices for sample collection, stabilization and preservaton
EP3117347A4 (en) Systems and methods for rapid data analysis
EP3097211A4 (en) Method and system for microbiome analysis
SG11201703410YA (en) Data processing method, apparatus, and system
GB201407334D0 (en) Integrated nucleic acid test system, instrument and method
EP3106859A4 (en) Carbon isotope analysis device and carbon isotope analysis method
EP2966446A4 (en) IDENTIFICATION CALIBRATION METHOD FOR BIOCHEMICAL BLOOD GAS ANALYSIS SYSTEM, AND DEVICE
GB201608455D0 (en) Break analysis system, method and device
ZA201805983B (en) Method, system, reagent kit and system for verifying hd-hook effect sample
EP3181203A4 (en) Motion analysis method, motion analysis device, motion analysis system, and program
SG11201707649SA (en) Method and device for analyzing gene
SG10201505775PA (en) Traffic analysis system, traffic analysis program, and traffic analysis method
EP3133390A4 (en) Blood state analysis device, blood state analysis system, blood state analysis method, and program
EP3120901A4 (en) Movement analysis method, movement analysis device, movement analysis system and program
EP3104167A4 (en) Sample detection plate, and fluorescence detection system and fluorescence detection method using same
GB201716304D0 (en) Data analysis system and method
IL254672A0 (en) A comment analysis system, a method for comment analysis and software for analysis of illuminations

Legal Events

Date Code Title Description
789A Request for publication of translation (sect. 89(a)/1977)

Ref document number: 2015151758

Country of ref document: WO