FI117988B - Informationsförvaltningssystem för biokemisk information - Google Patents
Informationsförvaltningssystem för biokemisk information Download PDFInfo
- Publication number
- FI117988B FI117988B FI20031020A FI20031020A FI117988B FI 117988 B FI117988 B FI 117988B FI 20031020 A FI20031020 A FI 20031020A FI 20031020 A FI20031020 A FI 20031020A FI 117988 B FI117988 B FI 117988B
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- Finland
- Prior art keywords
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- management system
- information management
- data
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Classifications
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- G—PHYSICS
- G06—COMPUTING; CALCULATING OR COUNTING
- G06Q—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR ADMINISTRATIVE, COMMERCIAL, FINANCIAL, MANAGERIAL OR SUPERVISORY PURPOSES; SYSTEMS OR METHODS SPECIALLY ADAPTED FOR ADMINISTRATIVE, COMMERCIAL, FINANCIAL, MANAGERIAL OR SUPERVISORY PURPOSES, NOT OTHERWISE PROVIDED FOR
- G06Q10/00—Administration; Management
- G06Q10/10—Office automation; Time management
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- G—PHYSICS
- G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
- G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
- G16B5/00—ICT specially adapted for modelling or simulations in systems biology, e.g. gene-regulatory networks, protein interaction networks or metabolic networks
-
- G—PHYSICS
- G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
- G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
- G16B5/00—ICT specially adapted for modelling or simulations in systems biology, e.g. gene-regulatory networks, protein interaction networks or metabolic networks
- G16B5/10—Boolean models
-
- G—PHYSICS
- G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
- G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
- G16B5/00—ICT specially adapted for modelling or simulations in systems biology, e.g. gene-regulatory networks, protein interaction networks or metabolic networks
- G16B5/20—Probabilistic models
-
- G—PHYSICS
- G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
- G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
- G16B5/00—ICT specially adapted for modelling or simulations in systems biology, e.g. gene-regulatory networks, protein interaction networks or metabolic networks
- G16B5/30—Dynamic-time models
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- Y—GENERAL TAGGING OF NEW TECHNOLOGICAL DEVELOPMENTS; GENERAL TAGGING OF CROSS-SECTIONAL TECHNOLOGIES SPANNING OVER SEVERAL SECTIONS OF THE IPC; TECHNICAL SUBJECTS COVERED BY FORMER USPC CROSS-REFERENCE ART COLLECTIONS [XRACs] AND DIGESTS
- Y10—TECHNICAL SUBJECTS COVERED BY FORMER USPC
- Y10S—TECHNICAL SUBJECTS COVERED BY FORMER USPC CROSS-REFERENCE ART COLLECTIONS [XRACs] AND DIGESTS
- Y10S707/00—Data processing: database and file management or data structures
- Y10S707/912—Applications of a database
-
- Y—GENERAL TAGGING OF NEW TECHNOLOGICAL DEVELOPMENTS; GENERAL TAGGING OF CROSS-SECTIONAL TECHNOLOGIES SPANNING OVER SEVERAL SECTIONS OF THE IPC; TECHNICAL SUBJECTS COVERED BY FORMER USPC CROSS-REFERENCE ART COLLECTIONS [XRACs] AND DIGESTS
- Y10—TECHNICAL SUBJECTS COVERED BY FORMER USPC
- Y10S—TECHNICAL SUBJECTS COVERED BY FORMER USPC CROSS-REFERENCE ART COLLECTIONS [XRACs] AND DIGESTS
- Y10S707/00—Data processing: database and file management or data structures
- Y10S707/99941—Database schema or data structure
- Y10S707/99942—Manipulating data structure, e.g. compression, compaction, compilation
-
- Y—GENERAL TAGGING OF NEW TECHNOLOGICAL DEVELOPMENTS; GENERAL TAGGING OF CROSS-SECTIONAL TECHNOLOGIES SPANNING OVER SEVERAL SECTIONS OF THE IPC; TECHNICAL SUBJECTS COVERED BY FORMER USPC CROSS-REFERENCE ART COLLECTIONS [XRACs] AND DIGESTS
- Y10—TECHNICAL SUBJECTS COVERED BY FORMER USPC
- Y10S—TECHNICAL SUBJECTS COVERED BY FORMER USPC CROSS-REFERENCE ART COLLECTIONS [XRACs] AND DIGESTS
- Y10S707/00—Data processing: database and file management or data structures
- Y10S707/99941—Database schema or data structure
- Y10S707/99944—Object-oriented database structure
- Y10S707/99945—Object-oriented database structure processing
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- Engineering & Computer Science (AREA)
- Physics & Mathematics (AREA)
- Health & Medical Sciences (AREA)
- Life Sciences & Earth Sciences (AREA)
- Bioinformatics & Cheminformatics (AREA)
- Theoretical Computer Science (AREA)
- Physiology (AREA)
- Bioinformatics & Computational Biology (AREA)
- Biotechnology (AREA)
- Evolutionary Biology (AREA)
- General Health & Medical Sciences (AREA)
- Medical Informatics (AREA)
- Spectroscopy & Molecular Physics (AREA)
- Biophysics (AREA)
- Molecular Biology (AREA)
- Business, Economics & Management (AREA)
- Human Resources & Organizations (AREA)
- Strategic Management (AREA)
- Entrepreneurship & Innovation (AREA)
- Data Mining & Analysis (AREA)
- Probability & Statistics with Applications (AREA)
- Economics (AREA)
- Marketing (AREA)
- Operations Research (AREA)
- Quality & Reliability (AREA)
- Tourism & Hospitality (AREA)
- General Business, Economics & Management (AREA)
- General Physics & Mathematics (AREA)
- Information Retrieval, Db Structures And Fs Structures Therefor (AREA)
- Apparatus Associated With Microorganisms And Enzymes (AREA)
Claims (12)
1. Informationsadministreringssystem för administrering av biologisk information (200), vilket informationsadministreringssystem omfattar en server ? (S) och en databas (DB), kännetecknat avatt den biologiska informa- 5 tionen (200) innehaller datamängder (202, 610, 620), av vilka var och en data-mängd omfattar: - en variabelvärdematris (614, 624), som innehaller variabelvärden anordnade som rader och kolumner; - en radbeskrivningslista (613, 623) pä ett variabelbeskrivningsspräk 10 (30) over variabelvärdematrisens rader; - en kolumnbeskrivningslista (612, 622) pa ett variabelbeskrivnings-spräk (30) över variabelvärdematrisens kolumner; - beskrivning (611, 621) av fasta dimensioner pa ett variabelbe-skrivningssprak (30) av en eller flera fasta dimensioner, vilka är gemensamma 15 för variabelvärdematrisens alla värden.
2. Informationsadministreringssystem enligt patentkrav 1, kä n n e-t e c k n a t av att: - variabelbeskrivningsspraket (30) omfattar variabelbeskrivningar, av vilka var och en omfattar ett eller flera par med ett nyckelord (32) och ett 20 namn (34); och .···. - informationsadministreringssystemet omfattar en tabell (38) med ,·)*; tillätna nyckelord. • *· • · ···'
3. Informationsadministreringssystem enligt patentkrav 2, k ä n n e - ΐ tecknat av att det omfattar en logik (300) för att utföra en syntaxkontroll för :*·]: 25 variabler som uttryckts pä nämnda variabelbeskrivningssprak.
··· • * **** 4. Informationsadministreringssystem enligt patentkrav 2 eller 3, kännetecknat av att det omfattar förenade variabeluttryck, av vilka vart • ‘ “ och ett omfattar tvä eller flera variabeluttryck, som har separerats med opera- törer och/eller funktioner. • · • · · *;./ 30
5. Informationsadministreringssystem enligt nägot av de föregäende • · *··* patentkraven, k ä n n e t e c k n a t av att det omfattar strukturerade beskriv- : ningar av biologiska stigar (700), vilka beskrivningar bestär av atminstone sti- :*·.· gar (212), biokemiska element (218), kopplingar (216) och interaktioner (222) sä att: ; 117988 32 - var och en stig (212) avser en eller flera kopplingar (216); - var och en koppling (216) förenar ett biokemiskt element (218) och en interaktion (222); och - var och en stig (212) avser ett specifikt läge (214).
6. Informationsadministreringssystem enligt patentkrav 5, k ä n n e - t e c k n a t av att var och en interaktion (222) avser en eller flera kinetiska lagar.
7. Informationsadminlstreringssystem enligt patentkrav 5 eller 6, k ä n n e t e c k n a t av att det omfattar medel för associering av en eller flera 10 pä förhand bestämda roller med respektive koppling, där rollen anger det bio-kemiska elementets (218) roll i interaktionen (222) och flera pa förhand bestämda roller omfattar ett substrat (840), en produkt (850), en aktivator (860) och en inhibitor (870).
8. Informationsadministreringssystem enligt nägot av patentkraven 15 5-7, k ä n n e t e c k n a t av att det omfattar medel för associering av en stoki- ometrisk koefficient med respektive koppling, där den stökiometriska koeffici-enten anger mängden producerade eller konsumerade molekyler i det bioke-miska elementet (218) i interaktionen (222).
9. Informationsadministreringssystem enligt nägot av patentkraven 20 5-8, kännetecknat av att det omfattar en användargränssnittslogik för ·»« att visa visualiseringar (800) av de strukturerade beskrivningarna av nämnda .·*·. biologiska stigar (700). ··· "1:
10. Informationsadministreringssystem enligt patentkrav 9, kän- :’· j n e t e c k n a t av att användargränssnittslogiken omfattar medel för att visa :***· 25 visualiseringar (800) av uppmätta eller pertuberade variabler, som har lokalise- ··· rats till biologiska stigars (700) biokemiska element (881), interaktioner (882) :·, och/eller kopplingar (883). • ·* • ί,,]ϊ
11. Informationsadministreringssystem enligt nägot av patentkraven .·,* : 5 -10, k ä n n e te c k n a t av att det omfattar stigkopplingar (720, 730) för att • · · 30 kombinera flera stigar (711 - 713) till en komplex stig. # · * · · . X
12. Informationsadministreringssystem enligt nägot av de föregäen- • · · ^1". de patentkraven, k ä n n e t e c k n a t av att det omfattar en användargräns- *: snittslogik för att visa dataspär (1102-1174) mellan besläktade datamängder.
Priority Applications (10)
Application Number | Priority Date | Filing Date | Title |
---|---|---|---|
FI20031020A FI117988B (sv) | 2003-07-04 | 2003-07-04 | Informationsförvaltningssystem för biokemisk information |
FI20045040A FI118102B (sv) | 2003-07-04 | 2004-02-16 | Informationskontrollsystem för kontroll av arbetsflöjden |
EP04103059A EP1503302A3 (en) | 2003-07-04 | 2004-06-30 | Information management system for biochemical information |
PCT/FI2004/000424 WO2005003999A1 (en) | 2003-07-04 | 2004-07-02 | Information management system for biochemical information |
EP04103140A EP1494156A3 (en) | 2003-07-04 | 2004-07-02 | Information management system for managing workflows |
JP2006516238A JP2007520773A (ja) | 2003-07-04 | 2004-07-02 | 生化学情報のための情報管理システム |
CA002531131A CA2531131A1 (en) | 2003-07-04 | 2004-07-02 | Information management system for biochemical information |
AU2004254729A AU2004254729A1 (en) | 2003-07-04 | 2004-07-02 | Information management system for biochemical information |
US10/883,036 US7340485B2 (en) | 2003-07-04 | 2004-07-02 | Information management system for biochemical information |
US10/883,043 US20050021877A1 (en) | 2003-07-04 | 2004-07-02 | Information management system for managing workflows |
Applications Claiming Priority (2)
Application Number | Priority Date | Filing Date | Title |
---|---|---|---|
FI20031020 | 2003-07-04 | ||
FI20031020A FI117988B (sv) | 2003-07-04 | 2003-07-04 | Informationsförvaltningssystem för biokemisk information |
Publications (3)
Publication Number | Publication Date |
---|---|
FI20031020A0 FI20031020A0 (sv) | 2003-07-04 |
FI20031020A FI20031020A (sv) | 2005-01-05 |
FI117988B true FI117988B (sv) | 2007-05-15 |
Family
ID=27636058
Family Applications (1)
Application Number | Title | Priority Date | Filing Date |
---|---|---|---|
FI20031020A FI117988B (sv) | 2003-07-04 | 2003-07-04 | Informationsförvaltningssystem för biokemisk information |
Country Status (3)
Country | Link |
---|---|
US (1) | US7340485B2 (sv) |
EP (1) | EP1503302A3 (sv) |
FI (1) | FI117988B (sv) |
Families Citing this family (6)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
AT412678B (de) * | 2002-09-30 | 2005-05-25 | Gerhard Dr Kranner | Verfahren zur rechnergestützten erstellung von prognosen für operative systeme sowie system zur erstellung von prognosen für operative systeme |
US7941433B2 (en) * | 2006-01-20 | 2011-05-10 | Glenbrook Associates, Inc. | System and method for managing context-rich database |
WO2008047432A1 (fr) | 2006-10-19 | 2008-04-24 | Fujitsu Limited | Programme de recherche d'informations, supports d'enregistrement comprenant un tel programme enregistré, procédé de recherche d'informations, dispositif de recherche d'informations |
JP4301285B2 (ja) * | 2006-12-20 | 2009-07-22 | ソニー株式会社 | 情報処理装置および方法、並びにプログラム |
US8332209B2 (en) * | 2007-04-24 | 2012-12-11 | Zinovy D. Grinblat | Method and system for text compression and decompression |
WO2010004544A1 (en) * | 2008-07-08 | 2010-01-14 | Technion - Research & Development Foundation Ltd | Decision support system for project managers and associated method |
Family Cites Families (12)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
US5930154A (en) * | 1995-01-17 | 1999-07-27 | Intertech Ventures, Ltd. | Computer-based system and methods for information storage, modeling and simulation of complex systems organized in discrete compartments in time and space |
US6138130A (en) | 1995-12-08 | 2000-10-24 | Inventure Technologies, Inc. | System and method for processing data in an electronic spreadsheet in accordance with a data type |
US6678669B2 (en) * | 1996-02-09 | 2004-01-13 | Adeza Biomedical Corporation | Method for selecting medical and biochemical diagnostic tests using neural network-related applications |
US6553317B1 (en) | 1997-03-05 | 2003-04-22 | Incyte Pharmaceuticals, Inc. | Relational database and system for storing information relating to biomolecular sequences and reagents |
US6272468B1 (en) * | 1997-12-01 | 2001-08-07 | John Peter Melrose | Clinical, heoristic, adminstrative, research & teaching (CHART) java-web-object information system for medical record management predicated on human body anatomy and physiology multi-media modeling |
EP1163614A1 (en) * | 1999-02-19 | 2001-12-19 | Cellomics, Inc. | Method and system for dynamic storage retrieval and analysis of experimental data with determined relationships |
US20020187514A1 (en) * | 1999-04-26 | 2002-12-12 | Hao Chen | Identification of molecular targets useful in treating substance abuse and addiction |
AU2001229744A1 (en) * | 2000-01-25 | 2001-08-07 | Cellomics, Inc. | Method and system for automated inference of physico-chemical interaction knowl edge |
AU2001286880A1 (en) * | 2000-11-28 | 2002-06-11 | Physiome Sciences, Inc. | System for modeling biological pathways |
US6658429B2 (en) | 2001-01-05 | 2003-12-02 | Symyx Technologies, Inc. | Laboratory database system and methods for combinatorial materials research |
US20020194201A1 (en) * | 2001-06-05 | 2002-12-19 | Wilbanks John Thompson | Systems, methods and computer program products for integrating biological/chemical databases to create an ontology network |
US7856317B2 (en) * | 2002-06-14 | 2010-12-21 | Genomatica, Inc. | Systems and methods for constructing genomic-based phenotypic models |
-
2003
- 2003-07-04 FI FI20031020A patent/FI117988B/sv active IP Right Grant
-
2004
- 2004-06-30 EP EP04103059A patent/EP1503302A3/en not_active Withdrawn
- 2004-07-02 US US10/883,036 patent/US7340485B2/en not_active Expired - Fee Related
Also Published As
Publication number | Publication date |
---|---|
FI20031020A0 (sv) | 2003-07-04 |
EP1503302A9 (en) | 2005-08-03 |
US20050010372A1 (en) | 2005-01-13 |
FI20031020A (sv) | 2005-01-05 |
EP1503302A2 (en) | 2005-02-02 |
EP1503302A3 (en) | 2007-10-10 |
US7340485B2 (en) | 2008-03-04 |
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