ES3052425T3 - Gene sequencing analysis method and apparatus, and storage medium and computer device - Google Patents

Gene sequencing analysis method and apparatus, and storage medium and computer device

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Publication number
ES3052425T3
ES3052425T3 ES22817861T ES22817861T ES3052425T3 ES 3052425 T3 ES3052425 T3 ES 3052425T3 ES 22817861 T ES22817861 T ES 22817861T ES 22817861 T ES22817861 T ES 22817861T ES 3052425 T3 ES3052425 T3 ES 3052425T3
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Spain
Prior art keywords
sequencing
analysis
slice data
slice
platform
Prior art date
Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
Active
Application number
ES22817861T
Other languages
English (en)
Inventor
Jiaobo Yang
Xiangqian Jin
Zengquan He
Youjin Zhang
Current Assignee (The listed assignees may be inaccurate. Google has not performed a legal analysis and makes no representation or warranty as to the accuracy of the list.)
BGI Genomics Co Ltd
Original Assignee
BGI Genomics Co Ltd
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
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Publication date
Application filed by BGI Genomics Co Ltd filed Critical BGI Genomics Co Ltd
Application granted granted Critical
Publication of ES3052425T3 publication Critical patent/ES3052425T3/es
Active legal-status Critical Current
Anticipated expiration legal-status Critical

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Classifications

    • G—PHYSICS
    • G06—COMPUTING OR CALCULATING; COUNTING
    • G06F—ELECTRIC DIGITAL DATA PROCESSING
    • G06F9/00—Arrangements for program control, e.g. control units
    • G06F9/06—Arrangements for program control, e.g. control units using stored programs, i.e. using an internal store of processing equipment to receive or retain programs
    • G06F9/46—Multiprogramming arrangements
    • G06F9/50—Allocation of resources, e.g. of the central processing unit [CPU]
    • G06F9/5005—Allocation of resources, e.g. of the central processing unit [CPU] to service a request
    • G06F9/5027—Allocation of resources, e.g. of the central processing unit [CPU] to service a request the resource being a machine, e.g. CPUs, Servers, Terminals
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B20/00—ICT specially adapted for functional genomics or proteomics, e.g. genotype-phenotype associations
    • G16B20/20—Allele or variant detection, e.g. single nucleotide polymorphism [SNP] detection
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B30/00—ICT specially adapted for sequence analysis involving nucleotides or amino acids
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B30/00—ICT specially adapted for sequence analysis involving nucleotides or amino acids
    • G16B30/20—Sequence assembly
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B40/00—ICT specially adapted for biostatistics; ICT specially adapted for bioinformatics-related machine learning or data mining, e.g. knowledge discovery or pattern finding
    • G16B40/20—Supervised data analysis
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B50/00—ICT programming tools or database systems specially adapted for bioinformatics

Landscapes

  • Engineering & Computer Science (AREA)
  • Physics & Mathematics (AREA)
  • Life Sciences & Earth Sciences (AREA)
  • Health & Medical Sciences (AREA)
  • Theoretical Computer Science (AREA)
  • Medical Informatics (AREA)
  • Bioinformatics & Cheminformatics (AREA)
  • Biotechnology (AREA)
  • Bioinformatics & Computational Biology (AREA)
  • Evolutionary Biology (AREA)
  • General Health & Medical Sciences (AREA)
  • Biophysics (AREA)
  • Spectroscopy & Molecular Physics (AREA)
  • Proteomics, Peptides & Aminoacids (AREA)
  • Software Systems (AREA)
  • Analytical Chemistry (AREA)
  • Chemical & Material Sciences (AREA)
  • Data Mining & Analysis (AREA)
  • Bioethics (AREA)
  • Databases & Information Systems (AREA)
  • Genetics & Genomics (AREA)
  • General Engineering & Computer Science (AREA)
  • General Physics & Mathematics (AREA)
  • Molecular Biology (AREA)
  • Artificial Intelligence (AREA)
  • Computer Vision & Pattern Recognition (AREA)
  • Epidemiology (AREA)
  • Evolutionary Computation (AREA)
  • Public Health (AREA)
  • Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
  • Investigating Or Analysing Biological Materials (AREA)
  • Apparatus Associated With Microorganisms And Enzymes (AREA)

Abstract

Un método y aparato de análisis de secuenciación genética, un medio de almacenamiento y un dispositivo informático. El método comprende: primero, realizar el procesamiento de cortes en una secuencia corta transmitida desde una plataforma de secuenciación en tiempo real para obtener el procesamiento de corte correspondiente; luego, introducir los datos de corte en una memoria para llamar a un programa de encapsulación precargado desde la memoria y realizar un análisis bioinformático de los datos de corte, obteniendo así el resultado del análisis correspondiente. Durante el proceso, no es necesario esperar a que una plataforma de secuenciación complete la secuenciación y luego transmitir el resultado completo a la plataforma correspondiente para su procesamiento y análisis. Los datos de corte secuenciados por la plataforma de secuenciación se adquieren en tiempo real y se realiza la secuenciación y el análisis en streaming de los datos de corte, acelerando así los procesos de secuenciación y análisis en su conjunto. Durante el análisis, los datos son datos de corte, lo que permite una mayor velocidad de transmisión y un menor consumo de tiempo en comparación con el resultado completo de la secuenciación. (Traducción automática con Google Translate, sin valor legal)
ES22817861T 2021-06-23 2022-06-06 Gene sequencing analysis method and apparatus, and storage medium and computer device Active ES3052425T3 (en)

Applications Claiming Priority (2)

Application Number Priority Date Filing Date Title
CN202110698855.6A CN113299344A (zh) 2021-06-23 2021-06-23 基因测序分析方法、装置、存储介质和计算机设备
PCT/CN2022/097102 WO2022267867A1 (zh) 2021-06-23 2022-06-06 基因测序分析方法、装置、存储介质和计算机设备

Publications (1)

Publication Number Publication Date
ES3052425T3 true ES3052425T3 (en) 2026-01-07

Family

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Family Applications (1)

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ES22817861T Active ES3052425T3 (en) 2021-06-23 2022-06-06 Gene sequencing analysis method and apparatus, and storage medium and computer device

Country Status (8)

Country Link
EP (1) EP4152334B1 (es)
JP (1) JP7515632B2 (es)
CN (1) CN113299344A (es)
AU (1) AU2022298428B2 (es)
ES (1) ES3052425T3 (es)
IL (1) IL298947B1 (es)
SA (1) SA522441760B1 (es)
WO (1) WO2022267867A1 (es)

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CN113299344A (zh) * 2021-06-23 2021-08-24 深圳华大医学检验实验室 基因测序分析方法、装置、存储介质和计算机设备
CN114237911A (zh) * 2021-12-23 2022-03-25 深圳华大医学检验实验室 基于cuda的基因数据处理方法、装置和cuda构架
CN114464253B (zh) * 2022-03-03 2023-03-10 予果生物科技（北京）有限公司 基于长读长测序进行实时病原检测的方法、系统和应用
CN114694753B (zh) * 2022-03-18 2023-04-07 深圳华大医学检验实验室 一种核酸序列比对方法、装置、设备及可读存储介质
CN115346605B (zh) * 2022-08-24 2025-12-19 深圳华大医学检验实验室 高通量测序背景下的基因数据处理方法、装置及相关设备
CN116092587B (zh) * 2023-04-11 2023-08-18 山东大学 一种基于生产者-消费者模型的生物序列分析系统及方法
CN116564415B (zh) * 2023-07-10 2023-10-17 深圳华大基因科技服务有限公司 流式测序分析方法、装置、存储介质及计算机设备
CN118581202B (zh) * 2024-06-24 2025-05-27 深圳祺氏医学检验实验室 一种基于全基因组的高通量基因测序方法
CN118866101B (zh) * 2024-06-27 2025-08-19 中国科学院天津工业生物技术研究所 一种Sanger测序结果分析的自动化在线工具
CN119292575B (zh) * 2024-08-21 2025-04-18 北京大学第一医院(北京大学第一临床医学院) 一种用于分析三代基因测序数据的软件平台的开发方法
CN120148616A (zh) * 2025-05-13 2025-06-13 上海欧易生物医学科技有限公司 一种时空多组学自动化分析方法

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JP2003330934A (ja) * 2002-05-10 2003-11-21 Celestar Lexico-Sciences Inc 変異体配列解析装置、変異体配列解析方法、プログラム、および、記録媒体
CN104975063B (zh) * 2014-04-01 2020-04-03 埃提斯生物技术（上海）有限公司 抗肿瘤药物生物标志物的筛选方法及其应用
CN104762402B (zh) * 2015-04-21 2017-05-24 广州定康医疗科技有限公司 超快速检测人类基因组单碱基突变和微插入缺失的方法
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CN113299344A (zh) * 2021-06-23 2021-08-24 深圳华大医学检验实验室 基因测序分析方法、装置、存储介质和计算机设备

Also Published As

Publication number Publication date
JP7515632B2 (ja) 2024-07-12
CN113299344A (zh) 2021-08-24
SA522441760B1 (ar) 2025-06-27
EP4152334B1 (en) 2025-07-23
AU2022298428B2 (en) 2024-07-18
IL298947B1 (en) 2025-11-01
EP4152334A4 (en) 2024-01-03
WO2022267867A1 (zh) 2022-12-29
JP2023534124A (ja) 2023-08-08
AU2022298428A1 (en) 2023-02-02
EP4152334A1 (en) 2023-03-22
IL298947A (en) 2023-02-01

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