EP3696275A4 - Method for improving loading and stability of nucleic acid on solid support - Google Patents

Method for improving loading and stability of nucleic acid on solid support Download PDF

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Publication number
EP3696275A4
EP3696275A4 EP17928398.1A EP17928398A EP3696275A4 EP 3696275 A4 EP3696275 A4 EP 3696275A4 EP 17928398 A EP17928398 A EP 17928398A EP 3696275 A4 EP3696275 A4 EP 3696275A4
Authority
EP
European Patent Office
Prior art keywords
stability
nucleic acid
solid support
improving loading
loading
Prior art date
Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
Pending
Application number
EP17928398.1A
Other languages
German (de)
French (fr)
Other versions
EP3696275A1 (en
Inventor
Hui Wang
Xun Xu
Jin Yang
Ao CHEN
Chongjun Xu
Wenwei Zhang
Current Assignee (The listed assignees may be inaccurate. Google has not performed a legal analysis and makes no representation or warranty as to the accuracy of the list.)
MGI Tech Co Ltd
Complete Genomics Inc
Original Assignee
MGI Tech Co Ltd
Complete Genomics Inc
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Application filed by MGI Tech Co Ltd, Complete Genomics Inc filed Critical MGI Tech Co Ltd
Priority to EP21213650.1A priority Critical patent/EP3995590A1/en
Publication of EP3696275A1 publication Critical patent/EP3696275A1/en
Publication of EP3696275A4 publication Critical patent/EP3696275A4/en
Pending legal-status Critical Current

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Classifications

    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12N—MICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
    • C12N15/00—Mutation or genetic engineering; DNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purification; Use of hosts therefor
    • C12N15/09—Recombinant DNA-technology
    • C12N15/10—Processes for the isolation, preparation or purification of DNA or RNA
    • C12N15/1003—Extracting or separating nucleic acids from biological samples, e.g. pure separation or isolation methods; Conditions, buffers or apparatuses therefor
    • C12N15/1006—Extracting or separating nucleic acids from biological samples, e.g. pure separation or isolation methods; Conditions, buffers or apparatuses therefor by means of a solid support carrier, e.g. particles, polymers
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6806—Preparing nucleic acids for analysis, e.g. for polymerase chain reaction [PCR] assay
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12N—MICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
    • C12N15/00—Mutation or genetic engineering; DNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purification; Use of hosts therefor
    • C12N15/09—Recombinant DNA-technology
    • C12N15/11—DNA or RNA fragments; Modified forms thereof; Non-coding nucleic acids having a biological activity
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6869—Methods for sequencing

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  • Chemical & Material Sciences (AREA)
  • Life Sciences & Earth Sciences (AREA)
  • Health & Medical Sciences (AREA)
  • Engineering & Computer Science (AREA)
  • Organic Chemistry (AREA)
  • Genetics & Genomics (AREA)
  • Zoology (AREA)
  • Wood Science & Technology (AREA)
  • General Engineering & Computer Science (AREA)
  • Bioinformatics & Cheminformatics (AREA)
  • Biotechnology (AREA)
  • Proteomics, Peptides & Aminoacids (AREA)
  • Biomedical Technology (AREA)
  • Molecular Biology (AREA)
  • Biophysics (AREA)
  • Biochemistry (AREA)
  • Physics & Mathematics (AREA)
  • General Health & Medical Sciences (AREA)
  • Microbiology (AREA)
  • Analytical Chemistry (AREA)
  • Immunology (AREA)
  • Plant Pathology (AREA)
  • Crystallography & Structural Chemistry (AREA)
  • Chemical Kinetics & Catalysis (AREA)
  • Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
EP17928398.1A 2017-10-11 2017-10-11 Method for improving loading and stability of nucleic acid on solid support Pending EP3696275A4 (en)

Priority Applications (1)

Application Number Priority Date Filing Date Title
EP21213650.1A EP3995590A1 (en) 2017-10-11 2017-10-11 Method for improving loading and stability of nucleic acid

Applications Claiming Priority (1)

Application Number Priority Date Filing Date Title
PCT/CN2017/105726 WO2019071471A1 (en) 2017-10-11 2017-10-11 Method for improving loading and stability of nucleic acid on solid support

Related Child Applications (1)

Application Number Title Priority Date Filing Date
EP21213650.1A Division EP3995590A1 (en) 2017-10-11 2017-10-11 Method for improving loading and stability of nucleic acid

Publications (2)

Publication Number Publication Date
EP3696275A1 EP3696275A1 (en) 2020-08-19
EP3696275A4 true EP3696275A4 (en) 2021-05-26

Family

ID=66100319

Family Applications (2)

Application Number Title Priority Date Filing Date
EP17928398.1A Pending EP3696275A4 (en) 2017-10-11 2017-10-11 Method for improving loading and stability of nucleic acid on solid support
EP21213650.1A Pending EP3995590A1 (en) 2017-10-11 2017-10-11 Method for improving loading and stability of nucleic acid

Family Applications After (1)

Application Number Title Priority Date Filing Date
EP21213650.1A Pending EP3995590A1 (en) 2017-10-11 2017-10-11 Method for improving loading and stability of nucleic acid

Country Status (4)

Country Link
US (1) US11485966B2 (en)
EP (2) EP3696275A4 (en)
CN (1) CN111148847B (en)
WO (1) WO2019071471A1 (en)

Families Citing this family (3)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
EP3696275A4 (en) * 2017-10-11 2021-05-26 MGI Tech Co., Ltd. Method for improving loading and stability of nucleic acid on solid support
WO2019205135A1 (en) * 2018-04-28 2019-10-31 深圳华大基因股份有限公司 Splint nucleic acid molecule used for performing cyclisation processing on single-chain nucleic acid molecules, and application therefor
AU2021230282A1 (en) 2020-03-03 2022-09-22 Pacific Biosciences Of California, Inc. Methods and compositions for sequencing double stranded nucleic acids

Citations (3)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US20040248161A1 (en) * 1999-09-16 2004-12-09 Rothberg Jonathan M. Method of sequencing a nucleic acid
WO2013066975A1 (en) * 2011-11-02 2013-05-10 Complete Genomics, Inc. Treatment for stabilizing nucleic acid arrays
WO2016058517A1 (en) * 2014-10-14 2016-04-21 Bgi Shenzhen Co., Limited Mate pair library construction

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US5143854A (en) 1989-06-07 1992-09-01 Affymax Technologies N.V. Large scale photolithographic solid phase synthesis of polypeptides and receptor binding screening thereof
CA2039517C (en) * 1990-04-03 2006-11-07 David Segev Dna probe signal amplification
US5426180A (en) 1991-03-27 1995-06-20 Research Corporation Technologies, Inc. Methods of making single-stranded circular oligonucleotides
US5639603A (en) 1991-09-18 1997-06-17 Affymax Technologies N.V. Synthesizing and screening molecular diversity
US5424413A (en) * 1992-01-22 1995-06-13 Gen-Probe Incorporated Branched nucleic acid probes
SE9400522D0 (en) 1994-02-16 1994-02-16 Ulf Landegren Method and reagent for detecting specific nucleotide sequences
US5641658A (en) 1994-08-03 1997-06-24 Mosaic Technologies, Inc. Method for performing amplification of nucleic acid with two primers bound to a single solid support
US5774305A (en) 1995-06-07 1998-06-30 Seagate Technology, Inc. Head gimbal assembly to reduce slider distortion due to thermal stress
US5854033A (en) 1995-11-21 1998-12-29 Yale University Rolling circle replication reporter systems
AU714486B2 (en) 1995-11-21 2000-01-06 Yale University Unimolecular segment amplification and detection
IL141148A0 (en) 1998-07-30 2002-02-10 Solexa Ltd Arrayed biomolecules and their use in sequencing
EP1218545B1 (en) 1999-08-18 2012-01-25 Illumina, Inc. Methods for preparing oligonucleotide solutions
US6383783B1 (en) * 1999-09-21 2002-05-07 3M Innovative Properties Company Nucleic acid isolation by adhering to hydrophobic solid phase and removing with nonionic surfactant
AU2001241723A1 (en) 2000-02-25 2001-09-03 Affymetrix, Inc. Methods for multi-stage solid phase amplification of nucleic acids
WO2006073504A2 (en) 2004-08-04 2006-07-13 President And Fellows Of Harvard College Wobble sequencing
US20070048759A1 (en) * 2005-06-10 2007-03-01 Dan Luo Detection of target molecules with labeled nucleic acid detection molecules
US7709197B2 (en) 2005-06-15 2010-05-04 Callida Genomics, Inc. Nucleic acid analysis by random mixtures of non-overlapping fragments
WO2007120208A2 (en) 2005-11-14 2007-10-25 President And Fellows Of Harvard College Nanogrid rolling circle dna sequencing
JP5180845B2 (en) 2006-02-24 2013-04-10 カリダ・ジェノミックス・インコーポレイテッド High-throughput genomic sequencing on DNA arrays
WO2007111937A1 (en) 2006-03-23 2007-10-04 Applera Corporation Directed enrichment of genomic dna for high-throughput sequencing
WO2008076414A2 (en) * 2006-12-15 2008-06-26 New York University Self-replicating materials
US9347092B2 (en) 2009-02-25 2016-05-24 Roche Molecular System, Inc. Solid support for high-throughput nucleic acid analysis
US9796749B2 (en) * 2011-08-05 2017-10-24 President And Fellows Of Harvard College Compositions and methods relating to nucleic acid nano- and micro-technology
EP4026912A1 (en) 2012-05-10 2022-07-13 The General Hospital Corporation Methods for determining a nucleotide sequence
WO2014071388A1 (en) * 2012-11-05 2014-05-08 Gartner Zev Jordan Methods of patterning cells on a surface of a substrate and programmed assembly of three-dimensional living tissues
GB2546833B (en) * 2013-08-28 2018-04-18 Cellular Res Inc Microwell for single cell analysis comprising single cell and single bead oligonucleotide capture labels
US11124846B2 (en) * 2014-07-14 2021-09-21 President And Fellows Of Harvard College Compositions comprising riboregulators and methods of use thereof
FI3901281T3 (en) * 2015-04-10 2023-01-31 Spatially distinguished, multiplex nucleic acid analysis of biological specimens
US10948484B2 (en) * 2016-04-11 2021-03-16 Veravas, Inc. Sample depletion and enrichment to improve the quality of diagnostic test results
SG11201909697TA (en) * 2017-05-01 2019-11-28 Illumina Inc Optimal index sequences for multiplex massively parallel sequencing
EP3696275A4 (en) * 2017-10-11 2021-05-26 MGI Tech Co., Ltd. Method for improving loading and stability of nucleic acid on solid support

Patent Citations (3)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US20040248161A1 (en) * 1999-09-16 2004-12-09 Rothberg Jonathan M. Method of sequencing a nucleic acid
WO2013066975A1 (en) * 2011-11-02 2013-05-10 Complete Genomics, Inc. Treatment for stabilizing nucleic acid arrays
WO2016058517A1 (en) * 2014-10-14 2016-04-21 Bgi Shenzhen Co., Limited Mate pair library construction

Non-Patent Citations (2)

* Cited by examiner, † Cited by third party
Title
MAK SARAH SIU TZE ET AL: "Comparative performance of the BGISEQ-500 vs Illumina HiSeq2500 sequencing platforms for palaeogenomic sequencing", GIGASCIENCE, vol. 6, no. 8, 26 June 2017 (2017-06-26), XP055795958, Retrieved from the Internet <URL:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5570000/pdf/gix049.pdf> DOI: 10.1093/gigascience/gix049 *
See also references of WO2019071471A1 *

Also Published As

Publication number Publication date
US11485966B2 (en) 2022-11-01
US20200255821A1 (en) 2020-08-13
CN111148847A (en) 2020-05-12
CN111148847B (en) 2024-05-07
EP3995590A1 (en) 2022-05-11
EP3696275A1 (en) 2020-08-19
WO2019071471A1 (en) 2019-04-18

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