EP3484348A4 - Verfahren und system für mikrobielle pharmakogenomik - Google Patents
Verfahren und system für mikrobielle pharmakogenomik Download PDFInfo
- Publication number
- EP3484348A4 EP3484348A4 EP17828501.1A EP17828501A EP3484348A4 EP 3484348 A4 EP3484348 A4 EP 3484348A4 EP 17828501 A EP17828501 A EP 17828501A EP 3484348 A4 EP3484348 A4 EP 3484348A4
- Authority
- EP
- European Patent Office
- Prior art keywords
- pharmacogenomics
- microbial
- microbial pharmacogenomics
- Prior art date
- Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
- Pending
Links
Classifications
-
- A—HUMAN NECESSITIES
- A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
- A61B—DIAGNOSIS; SURGERY; IDENTIFICATION
- A61B5/00—Measuring for diagnostic purposes; Identification of persons
- A61B5/48—Other medical applications
- A61B5/4848—Monitoring or testing the effects of treatment, e.g. of medication
-
- A—HUMAN NECESSITIES
- A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
- A61B—DIAGNOSIS; SURGERY; IDENTIFICATION
- A61B5/00—Measuring for diagnostic purposes; Identification of persons
- A61B5/48—Other medical applications
- A61B5/4836—Diagnosis combined with treatment in closed-loop systems or methods
- A61B5/4839—Diagnosis combined with treatment in closed-loop systems or methods combined with drug delivery
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
- C12Q1/6876—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes
- C12Q1/6888—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for detection or identification of organisms
- C12Q1/689—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for detection or identification of organisms for bacteria
-
- G—PHYSICS
- G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
- G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
- G16B20/00—ICT specially adapted for functional genomics or proteomics, e.g. genotype-phenotype associations
-
- G—PHYSICS
- G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
- G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
- G16B40/00—ICT specially adapted for biostatistics; ICT specially adapted for bioinformatics-related machine learning or data mining, e.g. knowledge discovery or pattern finding
- G16B40/20—Supervised data analysis
-
- A—HUMAN NECESSITIES
- A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
- A61B—DIAGNOSIS; SURGERY; IDENTIFICATION
- A61B5/00—Measuring for diagnostic purposes; Identification of persons
- A61B5/74—Details of notification to user or communication with user or patient ; user input means
- A61B5/746—Alarms related to a physiological condition, e.g. details of setting alarm thresholds or avoiding false alarms
-
- A—HUMAN NECESSITIES
- A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
- A61B—DIAGNOSIS; SURGERY; IDENTIFICATION
- A61B5/00—Measuring for diagnostic purposes; Identification of persons
- A61B5/74—Details of notification to user or communication with user or patient ; user input means
- A61B5/7465—Arrangements for interactive communication between patient and care services, e.g. by using a telephone network
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q2600/00—Oligonucleotides characterized by their use
- C12Q2600/106—Pharmacogenomics, i.e. genetic variability in individual responses to drugs and drug metabolism
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q2600/00—Oligonucleotides characterized by their use
- C12Q2600/156—Polymorphic or mutational markers
-
- G—PHYSICS
- G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
- G16H—HEALTHCARE INFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR THE HANDLING OR PROCESSING OF MEDICAL OR HEALTHCARE DATA
- G16H20/00—ICT specially adapted for therapies or health-improving plans, e.g. for handling prescriptions, for steering therapy or for monitoring patient compliance
- G16H20/10—ICT specially adapted for therapies or health-improving plans, e.g. for handling prescriptions, for steering therapy or for monitoring patient compliance relating to drugs or medications, e.g. for ensuring correct administration to patients
- G16H20/13—ICT specially adapted for therapies or health-improving plans, e.g. for handling prescriptions, for steering therapy or for monitoring patient compliance relating to drugs or medications, e.g. for ensuring correct administration to patients delivered from dispensers
-
- G—PHYSICS
- G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
- G16H—HEALTHCARE INFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR THE HANDLING OR PROCESSING OF MEDICAL OR HEALTHCARE DATA
- G16H40/00—ICT specially adapted for the management or administration of healthcare resources or facilities; ICT specially adapted for the management or operation of medical equipment or devices
- G16H40/60—ICT specially adapted for the management or administration of healthcare resources or facilities; ICT specially adapted for the management or operation of medical equipment or devices for the operation of medical equipment or devices
- G16H40/63—ICT specially adapted for the management or administration of healthcare resources or facilities; ICT specially adapted for the management or operation of medical equipment or devices for the operation of medical equipment or devices for local operation
-
- G—PHYSICS
- G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
- G16H—HEALTHCARE INFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR THE HANDLING OR PROCESSING OF MEDICAL OR HEALTHCARE DATA
- G16H50/00—ICT specially adapted for medical diagnosis, medical simulation or medical data mining; ICT specially adapted for detecting, monitoring or modelling epidemics or pandemics
- G16H50/20—ICT specially adapted for medical diagnosis, medical simulation or medical data mining; ICT specially adapted for detecting, monitoring or modelling epidemics or pandemics for computer-aided diagnosis, e.g. based on medical expert systems
-
- G—PHYSICS
- G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
- G16H—HEALTHCARE INFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR THE HANDLING OR PROCESSING OF MEDICAL OR HEALTHCARE DATA
- G16H50/00—ICT specially adapted for medical diagnosis, medical simulation or medical data mining; ICT specially adapted for detecting, monitoring or modelling epidemics or pandemics
- G16H50/30—ICT specially adapted for medical diagnosis, medical simulation or medical data mining; ICT specially adapted for detecting, monitoring or modelling epidemics or pandemics for calculating health indices; for individual health risk assessment
-
- G—PHYSICS
- G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
- G16H—HEALTHCARE INFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR THE HANDLING OR PROCESSING OF MEDICAL OR HEALTHCARE DATA
- G16H50/00—ICT specially adapted for medical diagnosis, medical simulation or medical data mining; ICT specially adapted for detecting, monitoring or modelling epidemics or pandemics
- G16H50/50—ICT specially adapted for medical diagnosis, medical simulation or medical data mining; ICT specially adapted for detecting, monitoring or modelling epidemics or pandemics for simulation or modelling of medical disorders
-
- G—PHYSICS
- G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
- G16H—HEALTHCARE INFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR THE HANDLING OR PROCESSING OF MEDICAL OR HEALTHCARE DATA
- G16H50/00—ICT specially adapted for medical diagnosis, medical simulation or medical data mining; ICT specially adapted for detecting, monitoring or modelling epidemics or pandemics
- G16H50/70—ICT specially adapted for medical diagnosis, medical simulation or medical data mining; ICT specially adapted for detecting, monitoring or modelling epidemics or pandemics for mining of medical data, e.g. analysing previous cases of other patients
-
- Y—GENERAL TAGGING OF NEW TECHNOLOGICAL DEVELOPMENTS; GENERAL TAGGING OF CROSS-SECTIONAL TECHNOLOGIES SPANNING OVER SEVERAL SECTIONS OF THE IPC; TECHNICAL SUBJECTS COVERED BY FORMER USPC CROSS-REFERENCE ART COLLECTIONS [XRACs] AND DIGESTS
- Y02—TECHNOLOGIES OR APPLICATIONS FOR MITIGATION OR ADAPTATION AGAINST CLIMATE CHANGE
- Y02A—TECHNOLOGIES FOR ADAPTATION TO CLIMATE CHANGE
- Y02A90/00—Technologies having an indirect contribution to adaptation to climate change
- Y02A90/10—Information and communication technologies [ICT] supporting adaptation to climate change, e.g. for weather forecasting or climate simulation
Landscapes
- Health & Medical Sciences (AREA)
- Life Sciences & Earth Sciences (AREA)
- Engineering & Computer Science (AREA)
- Chemical & Material Sciences (AREA)
- Physics & Mathematics (AREA)
- General Health & Medical Sciences (AREA)
- Biophysics (AREA)
- Molecular Biology (AREA)
- Medical Informatics (AREA)
- Public Health (AREA)
- Proteomics, Peptides & Aminoacids (AREA)
- Analytical Chemistry (AREA)
- Bioinformatics & Cheminformatics (AREA)
- Biomedical Technology (AREA)
- Surgery (AREA)
- Veterinary Medicine (AREA)
- Pathology (AREA)
- Animal Behavior & Ethology (AREA)
- Heart & Thoracic Surgery (AREA)
- Organic Chemistry (AREA)
- Zoology (AREA)
- Wood Science & Technology (AREA)
- Biotechnology (AREA)
- Genetics & Genomics (AREA)
- Medicinal Chemistry (AREA)
- Biochemistry (AREA)
- Microbiology (AREA)
- Immunology (AREA)
- General Engineering & Computer Science (AREA)
- Pharmacology & Pharmacy (AREA)
- Bioinformatics & Computational Biology (AREA)
- Data Mining & Analysis (AREA)
- Theoretical Computer Science (AREA)
- Spectroscopy & Molecular Physics (AREA)
- Evolutionary Biology (AREA)
- Nursing (AREA)
- Physiology (AREA)
- Bioethics (AREA)
- Evolutionary Computation (AREA)
- Software Systems (AREA)
Applications Claiming Priority (3)
Application Number | Priority Date | Filing Date | Title |
---|---|---|---|
US201662361943P | 2016-07-13 | 2016-07-13 | |
US15/606,743 US10803991B2 (en) | 2014-10-21 | 2017-05-26 | Method and system for microbiome-derived diagnostics and therapeutics |
PCT/US2017/042015 WO2018013865A1 (en) | 2016-07-13 | 2017-07-13 | Method and system for microbial pharmacogenomics |
Publications (2)
Publication Number | Publication Date |
---|---|
EP3484348A1 EP3484348A1 (de) | 2019-05-22 |
EP3484348A4 true EP3484348A4 (de) | 2021-11-24 |
Family
ID=60953350
Family Applications (1)
Application Number | Title | Priority Date | Filing Date |
---|---|---|---|
EP17828501.1A Pending EP3484348A4 (de) | 2016-07-13 | 2017-07-13 | Verfahren und system für mikrobielle pharmakogenomik |
Country Status (12)
Country | Link |
---|---|
EP (1) | EP3484348A4 (de) |
JP (2) | JP2019521706A (de) |
KR (1) | KR102397683B1 (de) |
CN (1) | CN109475305B (de) |
AU (1) | AU2017295861A1 (de) |
BR (1) | BR112019000709A8 (de) |
CA (1) | CA3030792A1 (de) |
CO (1) | CO2019001319A2 (de) |
EA (1) | EA201990294A1 (de) |
SG (1) | SG11201900253TA (de) |
WO (1) | WO2018013865A1 (de) |
ZA (1) | ZA201900473B (de) |
Families Citing this family (6)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
AU2018378356B2 (en) * | 2017-12-04 | 2023-09-14 | Cybele Microbiome, Inc. | Methods and compositions for identification and modulation of microbiome biochemical pathways to alter phenotype |
AU2019233926A1 (en) * | 2018-03-16 | 2020-06-18 | Psomagen, Inc. | Method and system for characterization of metabolism-associated conditions, including diagnostics and therapies, based on bioinformatics approach |
AU2019253118B2 (en) | 2018-04-13 | 2024-02-22 | Freenome Holdings, Inc. | Machine learning implementation for multi-analyte assay of biological samples |
AU2019281024A1 (en) * | 2018-06-07 | 2020-12-24 | 4D Pharma Plc | Method for stratifying IBS patients |
KR102346398B1 (ko) | 2020-09-01 | 2022-01-03 | 주식회사 에이아이바이오틱스 | 장내 미생물을 분석하여 평가 하는 시스템 및 평가 방법 |
US20220367050A1 (en) * | 2021-05-12 | 2022-11-17 | Zoe Limited | Predicting gut microbiome diversity |
Citations (3)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
WO2015066625A1 (en) * | 2013-11-01 | 2015-05-07 | Washington University | Methods to establish and restore normal gut microbiota function of subject in need thereof |
US20160110515A1 (en) * | 2014-10-21 | 2016-04-21 | Zachary Apte | Method and system for microbiome-derived diagnostics and therapeutics |
WO2016086305A1 (en) * | 2014-12-05 | 2016-06-09 | University Of Saskatchewan | Methods and reagents for detecting neisseria gonorrhoeae and its antimicrobial resistance determinants |
Family Cites Families (19)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
SG119177A1 (en) * | 1994-12-09 | 2006-02-28 | Imp College Innovations Ltd | Identification of genes |
CA2528007C (en) * | 2003-06-02 | 2012-03-27 | Chiron Corporation | Immunogenic compositions based on microparticles comprising adsorbed toxoid and a polysaccharide-containing antigen |
JP5127718B2 (ja) * | 2005-10-29 | 2013-01-23 | バイエル・テクノロジー・サービシズ・ゲゼルシヤフト・ミツト・ベシユレンクテル・ハフツング | 複雑な組成を有する生物学的起源のサンプル中の1種若しくはそれ以上の被検体の測定方法およびその使用 |
AU2009219197B2 (en) * | 2008-02-28 | 2014-04-10 | The Govt. Of The U.S.A. As Represented By The Secretary Of The Dep. Of Health And Human Services | MicroRNA-based methods and compositions for the diagnosis, prognosis and treatment of prostate related disorders |
CN102264899A (zh) * | 2008-11-04 | 2011-11-30 | 血细胞保存公司 | 弯曲的玻璃表面上的核酸提取 |
CN102844072A (zh) * | 2010-01-29 | 2012-12-26 | 优比欧迈德有限公司 | 微型针和微型针装置 |
CA2792956C (en) * | 2010-03-17 | 2021-11-16 | Socpra - Sciences Et Genie, S.E.C. | Bacterial vaccine components from staphylococcus aureus and uses thereof |
CN101833613A (zh) * | 2010-06-04 | 2010-09-15 | 中国科学院青岛生物能源与过程研究所 | 一种口腔微生物群落数据库及其应用 |
US20130121968A1 (en) * | 2011-10-03 | 2013-05-16 | Atossa Genetics, Inc. | Methods of combining metagenome and the metatranscriptome in multiplex profiles |
WO2013176774A1 (en) * | 2012-05-25 | 2013-11-28 | Arizona Board Of Regents | Microbiome markers and therapies for autism spectrum disorders |
US20140143188A1 (en) * | 2012-11-16 | 2014-05-22 | Genformatic, Llc | Method of machine learning, employing bayesian latent class inference: combining multiple genomic feature detection algorithms to produce an integrated genomic feature set with specificity, sensitivity and accuracy |
KR102222273B1 (ko) * | 2013-02-04 | 2021-03-08 | 세레스 테라퓨틱스, 인코포레이티드 | 조성물 및 방법 |
US9466024B2 (en) * | 2013-03-15 | 2016-10-11 | Northrop Grumman Systems Corporation | Learning health systems and methods |
CA2906135A1 (en) * | 2013-03-15 | 2014-09-18 | Prometheon Pharma, Llc | Devices, systems, and methods for transdermal delivery of compounds |
EP3017300A4 (de) * | 2013-07-01 | 2017-03-08 | Ixcela, Inc. | Systembiologischer therapieansatz |
WO2015013214A2 (en) * | 2013-07-21 | 2015-01-29 | Whole Biome, Inc. | Methods and systems for microbiome characterization, monitoring and treatment |
US10329628B2 (en) * | 2014-01-25 | 2019-06-25 | uBiome, Inc. | Method and system for microbiome analysis |
WO2016057679A1 (en) * | 2014-10-09 | 2016-04-14 | LuminaCare Solutions Inc. | Personalized antibiotic dosing platform |
CN105648060B (zh) * | 2016-01-29 | 2020-01-31 | 江汉大学 | 一种非诊断目的的人体病原微生物耐药性基因的检测方法 |
-
2017
- 2017-07-13 EP EP17828501.1A patent/EP3484348A4/de active Pending
- 2017-07-13 BR BR112019000709A patent/BR112019000709A8/pt not_active Application Discontinuation
- 2017-07-13 CA CA3030792A patent/CA3030792A1/en active Pending
- 2017-07-13 CN CN201780043788.6A patent/CN109475305B/zh active Active
- 2017-07-13 JP JP2019522621A patent/JP2019521706A/ja not_active Withdrawn
- 2017-07-13 KR KR1020197004007A patent/KR102397683B1/ko active IP Right Grant
- 2017-07-13 AU AU2017295861A patent/AU2017295861A1/en not_active Abandoned
- 2017-07-13 SG SG11201900253TA patent/SG11201900253TA/en unknown
- 2017-07-13 EA EA201990294A patent/EA201990294A1/ru unknown
- 2017-07-13 WO PCT/US2017/042015 patent/WO2018013865A1/en unknown
-
2019
- 2019-01-23 ZA ZA2019/00473A patent/ZA201900473B/en unknown
- 2019-02-13 CO CONC2019/0001319A patent/CO2019001319A2/es unknown
-
2022
- 2022-03-31 JP JP2022058908A patent/JP2022079646A/ja active Pending
Patent Citations (3)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
WO2015066625A1 (en) * | 2013-11-01 | 2015-05-07 | Washington University | Methods to establish and restore normal gut microbiota function of subject in need thereof |
US20160110515A1 (en) * | 2014-10-21 | 2016-04-21 | Zachary Apte | Method and system for microbiome-derived diagnostics and therapeutics |
WO2016086305A1 (en) * | 2014-12-05 | 2016-06-09 | University Of Saskatchewan | Methods and reagents for detecting neisseria gonorrhoeae and its antimicrobial resistance determinants |
Also Published As
Publication number | Publication date |
---|---|
KR20190033561A (ko) | 2019-03-29 |
BR112019000709A2 (pt) | 2019-05-14 |
KR102397683B1 (ko) | 2022-05-13 |
CO2019001319A2 (es) | 2019-02-19 |
WO2018013865A1 (en) | 2018-01-18 |
AU2017295861A1 (en) | 2019-01-24 |
ZA201900473B (en) | 2019-09-25 |
BR112019000709A8 (pt) | 2023-03-21 |
CA3030792A1 (en) | 2018-01-18 |
EA201990294A1 (ru) | 2019-08-30 |
SG11201900253TA (en) | 2019-02-27 |
EP3484348A1 (de) | 2019-05-22 |
CN109475305B (zh) | 2022-01-25 |
CN109475305A (zh) | 2019-03-15 |
JP2022079646A (ja) | 2022-05-26 |
JP2019521706A (ja) | 2019-08-08 |
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Ipc: C12Q 1/689 20180101ALI20211019BHEP Ipc: G16B 40/20 20190101ALI20211019BHEP Ipc: G16B 20/00 20190101ALI20211019BHEP Ipc: A61B 5/00 20060101ALI20211019BHEP Ipc: C12Q 1/04 20060101ALI20211019BHEP Ipc: A61B 1/00 20060101ALI20211019BHEP Ipc: A61B 5/05 20210101ALI20211019BHEP Ipc: G16B 40/10 20190101ALI20211019BHEP Ipc: G16H 50/20 20180101ALI20211019BHEP Ipc: G01N 33/50 20060101AFI20211019BHEP |