EP3317440A4 - Bioinformatics systems, apparatuses, and methods executed on an integrated circuit processing platform - Google Patents
Bioinformatics systems, apparatuses, and methods executed on an integrated circuit processing platform Download PDFInfo
- Publication number
- EP3317440A4 EP3317440A4 EP16818934.8A EP16818934A EP3317440A4 EP 3317440 A4 EP3317440 A4 EP 3317440A4 EP 16818934 A EP16818934 A EP 16818934A EP 3317440 A4 EP3317440 A4 EP 3317440A4
- Authority
- EP
- European Patent Office
- Prior art keywords
- apparatuses
- integrated circuit
- processing platform
- circuit processing
- methods executed
- Prior art date
- Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
- Withdrawn
Links
Classifications
-
- G—PHYSICS
- G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
- G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
- G16B50/00—ICT programming tools or database systems specially adapted for bioinformatics
- G16B50/30—Data warehousing; Computing architectures
-
- G—PHYSICS
- G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
- G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
- G16B30/00—ICT specially adapted for sequence analysis involving nucleotides or amino acids
- G16B30/20—Sequence assembly
-
- G—PHYSICS
- G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
- G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
- G16B30/00—ICT specially adapted for sequence analysis involving nucleotides or amino acids
- G16B30/10—Sequence alignment; Homology search
Landscapes
- Life Sciences & Earth Sciences (AREA)
- Physics & Mathematics (AREA)
- Engineering & Computer Science (AREA)
- Health & Medical Sciences (AREA)
- Theoretical Computer Science (AREA)
- Biotechnology (AREA)
- General Health & Medical Sciences (AREA)
- Biophysics (AREA)
- Bioinformatics & Cheminformatics (AREA)
- Bioinformatics & Computational Biology (AREA)
- Spectroscopy & Molecular Physics (AREA)
- Evolutionary Biology (AREA)
- Medical Informatics (AREA)
- Proteomics, Peptides & Aminoacids (AREA)
- Analytical Chemistry (AREA)
- Chemical & Material Sciences (AREA)
- Bioethics (AREA)
- Databases & Information Systems (AREA)
- Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
- Apparatus Associated With Microorganisms And Enzymes (AREA)
Priority Applications (1)
Application Number | Priority Date | Filing Date | Title |
---|---|---|---|
EP19199685.9A EP3608913A1 (en) | 2015-07-02 | 2016-07-01 | Bioinformatics systems, apparatuses, and methods executed on an integrated circuit processing platform |
Applications Claiming Priority (6)
Application Number | Priority Date | Filing Date | Title |
---|---|---|---|
US201562188443P | 2015-07-02 | 2015-07-02 | |
US14/811,836 US20220019919A1 (en) | 2015-07-02 | 2015-07-29 | Method And System For A Reduced Computation Hidden Markov Model In Computational Biology Applications |
US15/048,935 US20160171153A1 (en) | 2013-01-17 | 2016-02-19 | Bioinformatics Systems, Apparatuses, And Methods Executed On An Integrated Circuit Processing Platform |
US15/059,221 US10068054B2 (en) | 2013-01-17 | 2016-03-02 | Bioinformatics systems, apparatuses, and methods executed on an integrated circuit processing platform |
US15/094,939 US9792405B2 (en) | 2013-01-17 | 2016-04-08 | Bioinformatics systems, apparatuses, and methods executed on an integrated circuit processing platform |
PCT/US2016/040842 WO2017004589A1 (en) | 2015-07-02 | 2016-07-01 | Bioinformatics systems, apparatuses, and methods executed on an integrated circuit processing platform |
Related Child Applications (1)
Application Number | Title | Priority Date | Filing Date |
---|---|---|---|
EP19199685.9A Division EP3608913A1 (en) | 2015-07-02 | 2016-07-01 | Bioinformatics systems, apparatuses, and methods executed on an integrated circuit processing platform |
Publications (2)
Publication Number | Publication Date |
---|---|
EP3317440A1 EP3317440A1 (en) | 2018-05-09 |
EP3317440A4 true EP3317440A4 (en) | 2019-03-27 |
Family
ID=57609574
Family Applications (2)
Application Number | Title | Priority Date | Filing Date |
---|---|---|---|
EP19199685.9A Pending EP3608913A1 (en) | 2015-07-02 | 2016-07-01 | Bioinformatics systems, apparatuses, and methods executed on an integrated circuit processing platform |
EP16818934.8A Withdrawn EP3317440A4 (en) | 2015-07-02 | 2016-07-01 | Bioinformatics systems, apparatuses, and methods executed on an integrated circuit processing platform |
Family Applications Before (1)
Application Number | Title | Priority Date | Filing Date |
---|---|---|---|
EP19199685.9A Pending EP3608913A1 (en) | 2015-07-02 | 2016-07-01 | Bioinformatics systems, apparatuses, and methods executed on an integrated circuit processing platform |
Country Status (4)
Country | Link |
---|---|
EP (2) | EP3608913A1 (en) |
AU (3) | AU2016287752B2 (en) |
HK (1) | HK1254581A1 (en) |
WO (1) | WO2017004589A1 (en) |
Families Citing this family (7)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
US11183270B2 (en) | 2017-12-07 | 2021-11-23 | International Business Machines Corporation | Next generation sequencing sorting in time and space complexity using location integers |
IL279436B1 (en) | 2018-10-31 | 2024-07-01 | Illumina Inc | Systems and methods for grouping and collapsing sequencing reads |
BR112020025788A2 (en) * | 2019-05-24 | 2021-03-23 | Illumina, Inc. | method and system for generating and using a scatter table for mapping sample readings to a reference sequence, non-transitory computer-readable media |
CN111416654B (en) * | 2020-03-16 | 2021-07-09 | 北京邮电大学 | Satellite virtualization gateway station transmission architecture based on hardware acceleration |
CN111370064B (en) * | 2020-03-19 | 2023-05-05 | 山东大学 | Rapid classification method and system for gene sequences of SIMD (Single instruction multiple data) -based hash function |
US20220019665A1 (en) * | 2020-07-20 | 2022-01-20 | Cybereason Inc. | Systems and methods for determining measurements of similarity between various types of data |
WO2023172848A1 (en) * | 2022-03-08 | 2023-09-14 | Illumina, Inc. | Multi-pass software-accelerated genomic read mapping engine |
Citations (1)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
US20140371110A1 (en) * | 2013-01-17 | 2014-12-18 | Edico Genome, Corp. | Bioinformatics systems, apparatuses, and methods executed on an integrated circuit processing platform |
Family Cites Families (5)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
US701100A (en) * | 1901-05-16 | 1902-05-27 | Samuel Stewart | Gas heating-stove. |
KR101188886B1 (en) * | 2010-10-22 | 2012-10-09 | 삼성에스디에스 주식회사 | System and method for managing genetic information |
US9600625B2 (en) * | 2012-04-23 | 2017-03-21 | Bina Technologies, Inc. | Systems and methods for processing nucleic acid sequence data |
GB2523495A (en) | 2013-01-17 | 2015-08-26 | Edico Genome Corp | Bioinformatics systems, apparatuses, and methods executed on an integrated circuit processing platform |
US9734284B2 (en) * | 2013-03-15 | 2017-08-15 | Micron Technology, Inc. | Hardware acceleration of short read mapping for genomic and other types of analyses |
-
2016
- 2016-07-01 EP EP19199685.9A patent/EP3608913A1/en active Pending
- 2016-07-01 AU AU2016287752A patent/AU2016287752B2/en active Active
- 2016-07-01 EP EP16818934.8A patent/EP3317440A4/en not_active Withdrawn
- 2016-07-01 WO PCT/US2016/040842 patent/WO2017004589A1/en active Application Filing
-
2018
- 2018-10-17 HK HK18113286.6A patent/HK1254581A1/en unknown
-
2022
- 2022-03-02 AU AU2022201429A patent/AU2022201429A1/en not_active Abandoned
-
2024
- 2024-03-14 AU AU2024201692A patent/AU2024201692A1/en active Pending
Patent Citations (1)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
US20140371110A1 (en) * | 2013-01-17 | 2014-12-18 | Edico Genome, Corp. | Bioinformatics systems, apparatuses, and methods executed on an integrated circuit processing platform |
Also Published As
Publication number | Publication date |
---|---|
AU2022201429A1 (en) | 2022-03-24 |
AU2016287752A1 (en) | 2018-02-22 |
EP3317440A1 (en) | 2018-05-09 |
EP3608913A1 (en) | 2020-02-12 |
AU2016287752B2 (en) | 2021-12-02 |
HK1254581A1 (en) | 2019-07-19 |
WO2017004589A1 (en) | 2017-01-05 |
AU2024201692A1 (en) | 2024-05-02 |
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Legal Events
Date | Code | Title | Description |
---|---|---|---|
PUAI | Public reference made under article 153(3) epc to a published international application that has entered the european phase |
Free format text: ORIGINAL CODE: 0009012 |
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17P | Request for examination filed |
Effective date: 20180201 |
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AK | Designated contracting states |
Kind code of ref document: A1 Designated state(s): AL AT BE BG CH CY CZ DE DK EE ES FI FR GB GR HR HU IE IS IT LI LT LU LV MC MK MT NL NO PL PT RO RS SE SI SK SM TR |
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AX | Request for extension of the european patent |
Extension state: BA ME |
|
DAV | Request for validation of the european patent (deleted) | ||
DAX | Request for extension of the european patent (deleted) | ||
A4 | Supplementary search report drawn up and despatched |
Effective date: 20190225 |
|
RIC1 | Information provided on ipc code assigned before grant |
Ipc: G16B 30/10 20190101ALN20190219BHEP Ipc: G16B 50/30 20190101AFI20190219BHEP |
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REG | Reference to a national code |
Ref country code: HK Ref legal event code: DE Ref document number: 1254581 Country of ref document: HK |
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STAA | Information on the status of an ep patent application or granted ep patent |
Free format text: STATUS: THE APPLICATION IS DEEMED TO BE WITHDRAWN |
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18D | Application deemed to be withdrawn |
Effective date: 20190926 |