EP2858490B1 - Recombinant dna elements for the expression of recombinant proteins in insects - Google Patents

Recombinant dna elements for the expression of recombinant proteins in insects Download PDF

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EP2858490B1
EP2858490B1 EP12753914.6A EP12753914A EP2858490B1 EP 2858490 B1 EP2858490 B1 EP 2858490B1 EP 12753914 A EP12753914 A EP 12753914A EP 2858490 B1 EP2858490 B1 EP 2858490B1
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recombinant
baculovirus
nucleic acid
insect
protein
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EP2858490A2 (en
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Silvia Gomez Sebastian
Javier LÓPEZ VIDAL
José Angel MARTINEZ ESCRIBANO
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Alternative Gene Expression SL ALGENEX
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    • C12N15/00Mutation or genetic engineering; DNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purification; Use of hosts therefor
    • C12N15/09Recombinant DNA-technology
    • C12N15/63Introduction of foreign genetic material using vectors; Vectors; Use of hosts therefor; Regulation of expression
    • C12N15/79Vectors or expression systems specially adapted for eukaryotic hosts
    • C12N15/85Vectors or expression systems specially adapted for eukaryotic hosts for animal cells
    • C12N15/86Viral vectors
    • AHUMAN NECESSITIES
    • A01AGRICULTURE; FORESTRY; ANIMAL HUSBANDRY; HUNTING; TRAPPING; FISHING
    • A01KANIMAL HUSBANDRY; AVICULTURE; APICULTURE; PISCICULTURE; FISHING; REARING OR BREEDING ANIMALS, NOT OTHERWISE PROVIDED FOR; NEW BREEDS OF ANIMALS
    • A01K67/00Rearing or breeding animals, not otherwise provided for; New or modified breeds of animals
    • A01K67/033Rearing or breeding invertebrates; New breeds of invertebrates
    • AHUMAN NECESSITIES
    • A01AGRICULTURE; FORESTRY; ANIMAL HUSBANDRY; HUNTING; TRAPPING; FISHING
    • A01KANIMAL HUSBANDRY; AVICULTURE; APICULTURE; PISCICULTURE; FISHING; REARING OR BREEDING ANIMALS, NOT OTHERWISE PROVIDED FOR; NEW BREEDS OF ANIMALS
    • A01K67/00Rearing or breeding animals, not otherwise provided for; New or modified breeds of animals
    • A01K67/033Rearing or breeding invertebrates; New breeds of invertebrates
    • A01K67/0333Genetically modified invertebrates, e.g. transgenic, polyploid
    • A01K67/0337Genetically modified Arthropods
    • A01K67/0339Genetically modified insects, e.g. Drosophila melanogaster, medfly
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    • C12N15/00Mutation or genetic engineering; DNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purification; Use of hosts therefor
    • C12N15/09Recombinant DNA-technology
    • C12N15/63Introduction of foreign genetic material using vectors; Vectors; Use of hosts therefor; Regulation of expression
    • C12N15/79Vectors or expression systems specially adapted for eukaryotic hosts
    • C12N15/85Vectors or expression systems specially adapted for eukaryotic hosts for animal cells
    • C12N15/86Viral vectors
    • C12N15/866Baculoviral vectors
    • AHUMAN NECESSITIES
    • A01AGRICULTURE; FORESTRY; ANIMAL HUSBANDRY; HUNTING; TRAPPING; FISHING
    • A01KANIMAL HUSBANDRY; AVICULTURE; APICULTURE; PISCICULTURE; FISHING; REARING OR BREEDING ANIMALS, NOT OTHERWISE PROVIDED FOR; NEW BREEDS OF ANIMALS
    • A01K2227/00Animals characterised by species
    • A01K2227/70Invertebrates
    • AHUMAN NECESSITIES
    • A01AGRICULTURE; FORESTRY; ANIMAL HUSBANDRY; HUNTING; TRAPPING; FISHING
    • A01KANIMAL HUSBANDRY; AVICULTURE; APICULTURE; PISCICULTURE; FISHING; REARING OR BREEDING ANIMALS, NOT OTHERWISE PROVIDED FOR; NEW BREEDS OF ANIMALS
    • A01K2227/00Animals characterised by species
    • A01K2227/70Invertebrates
    • A01K2227/706Insects, e.g. Drosophila melanogaster, medfly
    • AHUMAN NECESSITIES
    • A01AGRICULTURE; FORESTRY; ANIMAL HUSBANDRY; HUNTING; TRAPPING; FISHING
    • A01KANIMAL HUSBANDRY; AVICULTURE; APICULTURE; PISCICULTURE; FISHING; REARING OR BREEDING ANIMALS, NOT OTHERWISE PROVIDED FOR; NEW BREEDS OF ANIMALS
    • A01K2267/00Animals characterised by purpose
    • A01K2267/01Animal expressing industrially exogenous proteins
    • AHUMAN NECESSITIES
    • A01AGRICULTURE; FORESTRY; ANIMAL HUSBANDRY; HUNTING; TRAPPING; FISHING
    • A01KANIMAL HUSBANDRY; AVICULTURE; APICULTURE; PISCICULTURE; FISHING; REARING OR BREEDING ANIMALS, NOT OTHERWISE PROVIDED FOR; NEW BREEDS OF ANIMALS
    • A01K2267/00Animals characterised by purpose
    • A01K2267/02Animal zootechnically ameliorated
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    • C12N2710/00MICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA dsDNA viruses
    • C12N2710/00011Details
    • C12N2710/14011Baculoviridae
    • C12N2710/14111Nucleopolyhedrovirus, e.g. autographa californica nucleopolyhedrovirus
    • C12N2710/14122New viral proteins or individual genes, new structural or functional aspects of known viral proteins or genes
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    • C12N2710/00011Details
    • C12N2710/14011Baculoviridae
    • C12N2710/14111Nucleopolyhedrovirus, e.g. autographa californica nucleopolyhedrovirus
    • C12N2710/14141Use of virus, viral particle or viral elements as a vector
    • C12N2710/14143Use of virus, viral particle or viral elements as a vector viral genome or elements thereof as genetic vector
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    • C12N2830/00Vector systems having a special element relevant for transcription
    • C12N2830/001Vector systems having a special element relevant for transcription controllable enhancer/promoter combination
    • C12N2830/002Vector systems having a special element relevant for transcription controllable enhancer/promoter combination inducible enhancer/promoter combination, e.g. hypoxia, iron, transcription factor
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    • C12N2830/00Vector systems having a special element relevant for transcription
    • C12N2830/60Vector systems having a special element relevant for transcription from viruses

Definitions

  • the present invention may be included in the field of biotechnology and it covers insects comprising nucleic acid sequences comprising, for example, promoters, homologous regions ( hr ) as enhancers, and sequences encoding transcriptional regulators, for example, the baculovirus Ac-ie-01 cDNA, or any combination thereof, which are able to increase the efficiency of recombinant protein expression, for example in insect larvae.
  • the present invention is also directed to methods using the above mentioned insect of the invention infected, transformed, transduced or transfected with those sequences or vectors, and methods for producing proteins by using the aforesaid insects.
  • the baculovirus expression vector system (BEVS) is a well-established method for the production of recombinant proteins to be used as vaccines, therapeutic molecules or diagnostic reagents. With its potential for over-expression and rapid speed of development, BEVS is one of the most attractive choices for producing recombinant proteins for any purpose.
  • the most employed baculovirus vector used in industry for recombinant protein expression is based on Autographa californica multinuclear polyhedrosis virus ( Ac MNPV) with Spodoptera frugiperda 9 ( Sf 9) or 21 ( Sf 21) insect cells as suitable expression hosts (1), as well as Trichoplusia ni ( T . ni ) insect larvae as living biofactories (2). Since the BEVS was developed in the 80's (3), hundreds of recombinant proteins, ranging from cytosolic enzymes to membrane-bound proteins, have been successfully produced in baculovirus-infected insect cells.
  • the recombinant antigen Upon infection, the recombinant antigen is accumulated in insect tissues and, after 3-4 days of infection, the larvae can be processed to obtain the recombinant antigen in quantities that can reach between several hundreds of ⁇ g to several milligrams per infected larva.
  • Experimental vaccines against animal infectious diseases have been tested with very good results, even using nonpurified soluble antigens obtained from larva, without any side effects in animals after repetitive immunization protocols (5, 6, 7, 8).
  • Other proteins with different applications have also been produced in insects as living biofactories, such as enzymes (9, 10), antibodies (11, 12), hormones (13, 14), cytokines (15, 16) and diagnostic proteins (17, 18, 19, 20).
  • BEVS Another possibility for improving the BEVS would be to increase preservation of cell integrity at late times post-infection by reducing the virus-induced cell death.
  • Reduction in the severe impairment of the insect cell machinery at late times post-infection caused by BEVS should not only increase the time frame for producing and accumulating recombinant proteins (secreted or not), but also allow more time for the folding of complex proteins or any post-translational modification of the produced proteins.
  • Baculovirus-infected insect larvae produce and accumulate recombinant proteins during the course of infection and in a virus dose-dependent manner. A prolonged survival of the infected larvae together with a certain protection to high infectious doses would dramatically increase the productivity of insects serving as living biofactories.
  • baculovirus DNA elements have been determined to be involved in the activation of late expression factor genes, which are necessary for virus propagation.
  • One of them is the immediate early (ie) protein IE-1 and its splice variant IE-0 from Ac MNPV ( Autographa californica multinuclear polyhedrosis virus).
  • IE-1 immediate early protein
  • IE-0 splice variant IE-0 from Ac MNPV ( Autographa californica multinuclear polyhedrosis virus).
  • Ac MNPV IE-1 is a 67-kDa dimeric DNA-binding protein that stimulates transcription in plasmid transfection assays through the activity of its N-terminal acidic domain (23, 24). IE-1 accumulates within the nucleus, where it is maintained through late times (25). Transactivation by IE-1 is enhanced by its binding as a homodimer to the baculovirus homologous region (hr) sequences, which function as transcriptional enhancers and origins of viral DNA replication.
  • Ac MNPV immediate early protein IE-0 (74 kDa) is identical to IE-1 except for an additional 54 amino acid residues at its N-terminus.
  • Ac MNPV IE-0 is a 72.6-kDa 636 amino acid protein composed of 38 amino acids encoded by orf141 ( exon0 ) , 16 amino acids encoded by the upstream nontranslated leader of ie1, and the entire 582 amino acid IE-1 protein.
  • the final product is therefore identical to IE-1 except for the additional 54 amino acids fused to the N-terminus.
  • IE-0 and IE-1 share biochemical activities, including hr enhancer binding and transcriptional regulation.
  • the present invention is focused on solving said problems by means of the incorporation of recombinant DNA elements in baculovirus expression cassettes.
  • the present invention surprisingly shows that said expression cassettes, containing baculovirus transcriptional regulators, an enhancer homologous region (hr) sequence and a promoter or a combination of promoters are able to increase recombinant protein production to unprecedented levels in insect larvae.
  • the expression cassettes as described also increase the survival rate of baculovirus-infected insect larvae at late times post-infection using high infectious doses, thus minimizing the pathogenicity effect in insects caused by the baculovirus infection.
  • an improvement in the integrity of cell functions during baculovirus infection also contributes to the correct recombinant protein posttranslational processing in insect larvae.
  • V.J. Valdes et al. disclose the use of double-stranded RNA to prevent in vitro and in vivo viral infections by recombinant baculovirus ( V.J.Valdes et al., Journal of Biological Chemistry, Vol. 278, No. 21 16 May 2003, pages 19317 - 19234 ).
  • EP1 811 027 discloses polynucleotides for the production of recombinant proteins in silkworm.
  • the present invention provides products and methods for the improved expression of recombinant proteins in baculovirus-infected insect larvae, as also defined in the claims:
  • the present invention improves the expression of recombinant proteins by means of the introduction of recombinant DNA elements into insects.
  • recombinant DNA elements of the present disclosure are sequences that cause the expression of baculovirus transcriptional regulators above endogenous levels and optionally enhancer homologous regions ( hr ) and promoters operably linked to these aforementioned elements.
  • the recombinant DNA elements may form part of an expression cassette.
  • “Expression cassette” refers to a nucleic acid sequence that contains recombinant DNA elements, which control (e.g. the promoter) and/or are required (e.g. the gene itself) for gene expression.
  • the expression cassette can be introduced in a recombinant vector or baculovirus.
  • the recombinant DNA elements may be incorporated in a single nucleic acid sequence, cloning vector, transfer vector, recombinant baculovirus or cell. However, they can also be present in different nucleic acid sequences, cloning vectors, transfer vectors or recombinant baculoviruses and be introduced into the same cell.
  • the present invention surprisingly shows that introduction into insect larvae of sequences that cause the expression of baculovirus transcriptional regulators above endogenous levels obtained during baculovirus infection and the introduction of an enhancer homologous region ( hr ) sequence, a promoter or a combination of promoters is able to increase the production of a recombinant protein to unprecedented levels. This indicates the usefulness of this system for the expression of recombinant proteins in vivo.
  • the introduction of these recombinant DNA elements into insect larvae with baculoviruses increases the survival rate of the larvae late after infection, especially after using high virus doses for infection (maximizes the recovered amount of biomass, i.e. the productivity of the system), as compared to larvae infected with a conventional baculovirus.
  • the insect biomass recovered at the end of the production process is significantly increased as well.
  • the integrity of the molecular cell machinery and cell morphology of said baculovirus-infected larvae is improved as compared to larvae infected with a conventional baculovirus.
  • An improvement in the integrity of cell functions during baculovirus infection also contributes to the correct post-translational processing of the recombinant protein.
  • one aspect of the invention relates to an insect as defined the claims that contains a nucleic acid sequence that allows for the expression above endogenous levels of transcriptional regulators obtained during baculovirus infection.
  • the transcriptional regulators are IE-1, IE-0 and/or fragments thereof.
  • Transcriptional regulator refers to a regulatory protein that has the ability to modulate the transcription of specific genes by, for example, binding to enhancer or repressor regions and/or recruiting further proteins that are involved in transcription.
  • IE-1 and its splice variant IE-0 are transcriptional regulators that are endogenously expressed during baculovirus infection.
  • IE-1, IE-0 and/or fragments thereof are recombinantly expressed to increase the total level of these proteins above endogenous levels. This is achieved through introducing further copies of the endogenous gene. Further copies of the endogenous genes can be introduced as transgenes under the control of a suitable promoter such as polh or pB29.
  • the expression level of the proteins IE-1, IE-0 and/or fragments thereof can be determined at both the mRNA and at the protein level with methods conventionally known to the person skilled in the art, such as quantitative PCR and Western Blot analysis.
  • IE-1, IE-0 and fragments thereof are encoded by the nucleic acids of SEQ ID NO: 1 (also referred to as Ac-ie-01 ) to SEQ ID NO: 5.
  • SEQ ID NO: 1 is the Ac-ie-01 cDNA that encodes both IE-1 and IE-0
  • SEQ ID NO: 2 is the coding sequence (CDS) of IE-1
  • SEQ ID NO: 3 is the CDS of IE-0.
  • SEQ ID NO: 4 and 5 are the CDSs of the N-terminal domains of IE-1 and IE-0 respectively that retain the catalytic transcriptional regulator activity.
  • the proteins that are encoded by SEQ ID NO: 2-5 are represented by SEQ ID NO: 6-9 respectively.
  • the present disclosure furthermore discloses variants of SEQ ID NO: 1-9 that are or encode amino acids that are able to function as a transcriptional regulator.
  • These variants are nucleic or amino acids whose nucleotide or amino acid sequence differs in one or more positions from these parental nucleic or amino acids, whereby differences might be additions, deletions and/or substitutions of nucleotides or amino acid residues.
  • Nucleic and amino acid sequences of the disclosure shall be distinguished from other nucleic and amino acid sequences by their degree of sequence identity or similarity respectively as determined using EMBOSS Needle with the default parameters (http://www.ebi.ac.uk/Tools/psa/emboss_needle/).
  • Methods for the generation of such variants include random or site directed mutagenesis, site-saturation mutagenesis, PCR-based fragment assembly, DNA shuffling, homologous recombination in vitro or in vivo, and methods of gene-synthesis.
  • sequence of the variants of SEQ ID NO: 1-5 is at least 70%, preferably at least 75%, more preferably at least 80%, more preferably at least 85%, more preferably at least 90% and most preferably at least 95% identical to the sequences of SEQ ID NO: 1-5.
  • sequence of the variants of SEQ ID NO: 6-9 is at least 70%, preferably at least 75%, more preferably at least 80%, more preferably at least 85%, more preferably at least 90% and most preferably at least 95% similar to the sequences of SEQ ID NO: 6-9.
  • the insect is a lepidopter preferably selected from the group consisting of Trichoplusia ni, Spodoptera frugiperda, Spodoptera exigua, Ascalapha odorata, Bombyx mori, Rachiplusia ni and Estigmene acrea.
  • the insect is a larva.
  • the insect of the present invention further contains, in addition to the nucleic acid sequence that allows for the expression above endogenous levels of the proteins IE-1, IE-0 and/or fragments thereof, a recombinant homologous region ( hr ) that can enhance the expression of a recombinant protein by being operably linked to the respective promoter.
  • a recombinant homologous region hr
  • Homologous regions are comprised of repeated units of about 70-bp with an imperfect 30-bp palindrome near their center. Homologous regions are repeated at eight locations in the Ac MNPV genome with 2 to 8 repeats at each side. Homologous regions have been implicated as both transcriptional enhancers and origins of baculovirus DNA replication.
  • Enhancer region refers to a control sequence, whose binding by transcriptional regulators increases the level of transcription of associated genes.
  • Recombinant protein refers to a protein that originates from recombinant DNA. Such proteins can be used for the benefit of humans and animals and may have industrial, commercial or therapeutic application.
  • Being operably linked refers to two nucleic acid sequences that are connected in a way that one influences the other in terms of, for example, transcriptional regulation.
  • Promoter refers to a DNA sequence to which RNA polymerase can bind to initiate transcription.
  • the sequence may further contain binding sites for various proteins that regulate transcription, such as transcription factors.
  • the promoter sequence may be composed of different promoter fragments (either different or the same fragments) that are localized closely in the DNA sequence and may be separated by linkers or spacer. Such promoters are referred to as chimeric promoters.
  • the enhancer homologous region sequence hr upstream of the promoter/s is preferably hr1 (SEQ ID NO: 27).
  • the promoters that drive the expression of the recombinant protein are selected from the group comprising SEQ ID NO: 10-16 or a sequence that is able to function as a promoter and has at least 70%, preferably at least 75%, more preferably at least 80%, more preferably at least 85%, more preferably at least 90% and most preferably at least 95% identity with the nucleotide sequence indicated in any of SEQ ID NO: 10-16.
  • the nucleic acid sequence comprises combinations of recombinant promoters, sequences encoding transcriptional regulators and enhancer regions selected from the group comprising SEQ ID NO: 17-26.
  • the recombinant promoters, sequences encoding transcriptional regulators and enhancer regions do not need to form part of a single molecule, instead these sequences may form part of distinct molecules as long as they are operably linked, i.e. contained within the same cells.
  • the insect of the present invention preferably comprises a nucleic acid sequence encoding a recombinant protein.
  • This nucleic acid sequence is operably linked to the nucleic acid sequence that allows for the expression above endogenous levels of the proteins IE-1, IE-0 and/or fragments thereof and to a homologous region ( hr ).
  • the above described recombinant DNA elements are introduced into the insect by a recombinant baculovirus.
  • the baculovirus is Ac MNPV or Bm NPV and the insect an insect larva.
  • the baculovirus is administered to the larva by oral administration (per os) or more preferably by injection.
  • the insect is infected, transfected, transduced or transformed with the recombinant baculovirus, transfer vector, cloning vector or nucleic acid sequence of the present invention.
  • the insect larvae are reared in a rearing module, such as described in the patent application ES 2 232 308 .
  • the invention discloses methods for producing a recombinant protein using the insect of the present invention.
  • an insect can be infected, transfected, transduced or transformed with the recombinant baculovirus, transfer. vector, cloning vector or nucleic acid sequence. After expression of the recombinant protein, extraction and purification of the recombinant protein is done by conventional means.
  • the larvae are infected by injecting a high virus dose (higher than 10 4 Plaque Forming Units) of the recombinant bacutovirus 3-4 days after infection, the infected larvae are processed and the whole soluble protein extract is obtained by the use of appropriate extraction buffers. Extracts are centrifuged and the lipid fraction eliminated. Then, the recombinant protein is purified by conventional means.
  • a high virus dose higher than 10 4 Plaque Forming Units
  • the recombinant protein that is preferably produced by the methods of the present invention is a protein selected from the group comprising subunit monomeric vaccine, subunit multimeric vaccine, virus like particle, therapeutic protein, antibody, enzyme, cytokine, blood clotting factor, anticoagulant, receptor, hormone or diagnostic protein reagent
  • One aspect of the disclosure relates to the use of the recombinant baculovirus, transfer vector, cloning vector or nucleic acid sequence of the invention in a rearing, feeding or injection medium for an insect.
  • the present disdosure relates to a baculovirus that can be used to produce the insect of the present invention and comprises said sequence for expression above endogenous levels of the proteins IE-0, IE-1 and/or fragments thereof.
  • Bactivirus refers to a family of infectious viruses for invertebrates, mainly infecting insects and arthropods.
  • a "recombinant baculovirus” has further introduced recombinant DNA through, for example, homologous recombination or transposition.
  • the recombinant baculovirus preferably originates from Ac MNPV ( Autographa californica nuclear polyhedrosis virus) or Bm NPV ( Bombyx mori nucleopolyhedrovirus).
  • Recombinant DNA refers to a form of artificial DNA that is engineered through the combination or insertion of one or more DNA strands, thereby combining DNA that would normally not occur together.
  • Recombinant DNA element refers to a functional element within recombinant DNA, such as a promoter, enhancer or a gene.
  • the recombinant DNA elements of the present invention are sequences that cause the expression of baculovirus transcriptional regulators above endogenous levels, enhancer homologous regions ( hr ) and promoters operably linked to these aforementioned elements.
  • the baculovirus transcriptional regulators IE-1, IE-0 or fragments thereof are expressed above endogenous levels obtained during baculovirus infection.
  • the recombinant baculovirus contains in addition to (i) the sequence for expression above endogenous levels of the proteins IE-0, IE-1 and/or fragments thereof, (ii) a recombinant homologous region ( hr ) linked to (iii) a suitable promoter for driving the expression of a recombinant protein.
  • a suitable promoter for driving the expression of a recombinant protein preferably contains a nucleic acid sequence encoding a recombinant protein.
  • the present disclosure further related to a transfer vector that can be used to produce the insec of the present invention and/or a recombihant baculovirus and comprises said sequence for expression above endogenous levels of the proteins IE-0, IE-1 and/or fragments thereof, in addition to a sequence suitable for Integration or transposition in a baculovirus.
  • Transfer vectors generally permit the insertion of genetic information into a baculovirus.
  • the transfer vector preferably contains in addition to (i) the sequence for expression above endogenous levels of the proteins IE-0, IE-1 and/or fragments thereof, (ii) a recombinant homologous region (hr) linked to (iii) a suitable promoter for driving the expression of a recombinant protein.
  • a recombinant homologous region hr
  • a suitable promoter for driving the expression of a recombinant protein preferably contains in addition to (i) the sequence for expression above endogenous levels of the proteins IE-0, IE-1 and/or fragments thereof, (ii) a recombinant homologous region (hr) linked to (iii) a suitable promoter for driving the expression of a recombinant protein.
  • the preferred combinations of these recombinant DNA elements are as described above for the insects.
  • the transfer vector comprises a nucleic acid sequence encoding said recombinant protein, whereas in another preferred embodiment the transfer vector lacks such sequence.
  • the transfer vector is a bacmid.
  • Bocmid refers to a plasmid construct which contains the DNA sequence sufficient for generating a baculovirus when transfected into a cell.
  • the transfer vector is derived from any of the commercially available baculovirus expression systems "Bac-to-Bac ® " (invitrogenTM), “BacPAKTM” (ClontechTM), “FlashBACTM” (Oxford Expression TechnologiesTM), “BacuVanceTM” (GenScriptTM). "Bac-N-Blue DNATM” (invitrogenTM), “BaculoDirectTM” (invitrogenTM), “BacVector®” 1000, 2000, 3000 (Novagen ® ), “DiamondBacTM” (Sigma-Aldrich ® ) or “BaculoGoldTM” (BD biosciencesTM).
  • the present disclosure further relates to a cloning vector that can be used to produce the insect of the present invention a recombinant baculovirus and/or transfer vector and comprises said sequence for expression above endogenous levels of the proteins IE-0, IE-1 and/or fragments thereof, which is further suitable for bacterial replication.
  • Codoning vector refers to any vector that is suitable for cloning, which generally involves the presence of restriction sites, an origin of replication for bacterial propagation and a selectable marker.
  • the cloning vector preferably contains in addition to (i) the sequence for expression above endogenous levels of the proteins IE-0, IE-1 and/or fragments thereof, (ii) a recombinant homologous region ( hr ) linked to (iii) a suitable promoter for driving the expression of a recombinant protein.
  • a recombinant homologous region hr
  • a suitable promoter for driving the expression of a recombinant protein preferably contains in addition to (i) the sequence for expression above endogenous levels of the proteins IE-0, IE-1 and/or fragments thereof, (ii) a recombinant homologous region ( hr ) linked to (iii) a suitable promoter for driving the expression of a recombinant protein.
  • the preferred combinations of these recombinant DNA elements are as described above for the insects.
  • the cloning vector comprises a nucleic acid sequence encoding said recombinant protein (also referred to as the "donor vector"), whereas in another preferred aspect the cloning vector lacks such sequence.
  • the present disclosure also relates to a nucleic acid sequence that can be used to produce the insect, recombinant baculovirus, transfer vector and/or cloning vector and comprises said sequence for expression above endogenous levels of the proteins IE-0, IE-1 and/or fragments thereof.
  • the nucleic acid sequence preferably contains in addition to (i) the sequence for expression above endogenous levels of the proteins IE-0, IE-1 and/or fragments thereof, (ii) a recombinant homologous region ( hr ) linked to (iii) a suitable promoter for driving the expression of a recombinant protein.
  • a suitable promoter for driving the expression of a recombinant protein preferably contains in addition to (i) the sequence for expression above endogenous levels of the proteins IE-0, IE-1 and/or fragments thereof, (ii) a recombinant homologous region ( hr ) linked to (iii) a suitable promoter for driving the expression of a recombinant protein.
  • the preferred combinations of these recombinant DNA elements are as described above for the insects.
  • the nucleic acid sequence comprises a nucleic acid sequence encoding said recombinant protein, whereas in another preferred embodiment the nucleic acid sequence lacks such sequence.
  • CDS Protein coding sequence
  • IE-1 3 CDS of IE-0 4 CDS of the IE-1 N-terminal domain 5 CDS of the IE-0 N-terminal domain 6
  • IE-1 protein 7
  • IE-0 protein 8
  • Plasmids were deposited in the Spanish Type Culture Collection (CECT) (www.cect.org); University of Valencia, Parc Cient ⁇ fic Universitat de València; Catedrático Agust ⁇ n Escardino, 9; 46980 Paterna (Valencia), Spain, with the accession number CECT 8031, on the date October 4, 2011.
  • CECT Spanish Type Culture Collection
  • Example 1 Overexpression of baculovirus transcriptional regulators potentiates the enhancer function of a homologous region hr functionally linked to a promoter increasing recombinant protein expression in a baculovirus vector expression system (BEVS).
  • BEVS baculovirus vector expression system
  • Immediate early viral proteins encoded by the Ac-ie-01 cDNA, i.e. IE-1 and IE-0, from Ac MNPV are potent transcriptional regulators in baculoviruses. Transactivation mediated by these proteins is enhanced by their binding as a homodimer to the baculovirus homologous region ( hr ) sequences, which act as transcriptional enhancers.
  • Ac MNPV IE-1/IE-0 are 67-72 kDa dimeric DNA-binding proteins that stimulate transcription in plasmid transfection assays through the activity of their N-terminal acidic domain (7, 8). Synthesized very early during infection, IE-1 and IE-0 accumulate within the nucleus, where they are maintained through late times.
  • the resulting plasmid was used to generate a recombinant baculovirus by the "Bac-to-Bac ® " system (invitrogenTM).
  • a conventional baculovirus expressing the GFP protein under the control of polh promoter was generated by the same system.
  • GFP protein mediated by the different baculoviruses was studied by fluorimetry at 96 hours post-infection in Trichoplusia ni larvae using a low or high infectious dose (5 x 10 2 or 5 x 10 4 respectively).
  • the expression level of GFP was increased in larval extracts by the baculovirus containing above expression cassette by about 13 to more than 40% depending on the virus dose used ( Figure 4A ).
  • Similar results were observed by using baculoviruses in which the Ac-ie-01 cDNA was expressed under the control of the insect-derived pB29 promoter or when the GFP was expressed under the control of the hr1pB29p10 promoter (data not shown).
  • Example 2 The baculovirus expression cassettes increase the baculovirus-infected insect larvae surviving rates and insect biomass recovered using high infectious doses through the transcriptional regulators encoded by the Ac-ie-01 cDNA
  • a dose of 5 x 10 4 could be used, recovering the same number of larvae at the end of the production process ( Figure 4B ).
  • the baculovirus containing the expression cassette yields more than twice the amount of recombinant protein produced in insect larvae infected with the optimal dose for the conventional baculovirus (5 x 10 2 PFUs) ( Figure 4 A and B).
  • baculovirus expressing the transcriptional regulators encoded by the Ac-ie-01 cDNA under the control of the polh promoter was generated. Then, T. ni larvae were infected with a high infectious dose (5 x 10 4 PFUs) of this baculovirus. As control, we used a baculovirus expressing the GFP protein under the control of the same promoter.
  • larvae infected with the expression cassette polhAc-ie-01 / hr1p6.9p10GFP larvae infected with the baculovirus overexpressing the Ac-ie-01 cDNA ( polhAc-ie-01 ) also showed increased survival rates when compared with larvae infected with a conventional baculovirus expressing the GFP reporter protein under the control of the same promoter ( polhGPF ) ( Figure 6A ).
  • Example 3 Overexpression in a baculovirus expression system of transcriptional regulators encoded by the Ac-ie-01 cDNA facilitates the post-translational processing of recombinant proteins in infected insect larvae used as biofactories.
  • baculovirus strong promoters commonly used for research and production such as polh and p10, only express the foreign genes at late times post-infection when infected cells already show severe cytopathic effects and the cellular viability decreases.
  • the overexpression of the transcriptional regulators used in the baculovirus expression cassette protects cells from pathogenic effects of the baculovirus infection, allowing a wide temporal window for recombinant protein production in cells remaining fully viable.
  • the infected larvae extracts were also analyzed by Western blot using anti-GFP monoclonal antibody (mab2515; MilliporeTM) ( Figure 7C ).
  • the GFP protein was detected in larvae extracts infected by both baculoviruses, but showed a difference in electrophoretic mobility of the recombinant protein as observed by Coomassie blue staining.
  • Example 4 Cell culture and viruses.
  • the Spodoptera frugiperda Sf21 or Sf9 cell lines were cultured in 6-well tissue culture plates (1x10 6 cells/well) in TNM-FH insect medium (Pan BiotechTM, Germany) containing 10 % heat-inactivated fetal bovine serum (Pan BiotechTM, Germany) at 27°C.
  • Ac MNPV recombinant baculoviruses were obtained by the "Bac-to-Bac ® " Baculovirus Expression System (invitrogenTM, USA).
  • Different transfer vectors containing the recombinant DNA elements of the invention were generated using the pFastBacTM-DUAL plasmid (invitrogenTM).
  • the promoters and regulatory elements incorporated into pFastBacTM-DUAL were synthesized (GenScriptTM, USA) with the adequate flanking restriction sequences to facilitate the cloning. These transfer vectors were used to transfect Sf 21 cells with Cellfectin® (invitrogenTM, USA). The resulting recombinant baculoviruses from the infection of Sf 21 cells were then passaged twice in cells and titered by the plaque assay method.
  • the obtained gene constructs of the baculovirus expression cassettes are schematically shown in Figure 8 , showing different potential combinations of promoters driving the expression of the Ac-ie-01 cDNA or the foreign gene (e.g. GFP). The different expression cassettes were used to generate the recombinant baculoviruses used in the examples shown in Figures 4 to 7 .
  • the cloning vector is a small piece of DNA containing the baculovirus expression cassette into which a foreign DNA fragment can be inserted by treating the vehicle and the foreign DNA with a restriction enzyme that creates the same overhang, then ligating the fragments together.
  • the essential characteristics of the cloning vector must include a synthetic multiple cloning site (MCS) to facilitate the insertion of foreign genes directed in a chosen orientation, a selectable marker, such as an antibiotic resistance to allow the selection of positively transformed cells and a functional origin of replication (ORI) for propagation in bacteria.
  • MCS synthetic multiple cloning site
  • ORI functional origin of replication
  • a donor vector consists of a cloning vector, for example a pUC57 plasmid, containing the baculovirus expression cassette, into which a foreign gene has been cloned using the appropriate restriction enzymes.
  • the baculovirus expression cassette was synthesized by ligating the following DNA sequences: (i) the baculovirus transcriptional regulator encoding sequence Ac-ie-01 downstream of a promoter sequence, such as the polh or the pB29 promoter, and upstream of the HSV TK polyadenylation signal and (ii) in another locus an enhancer sequence, for example, the homologous region hr1, upstream of (iii) a promoter sequence, for example, pB29p10, p10, p6.9p10 or polh, followed by a multiple cloning site (MCS) for cloning the gene of interest and the SV40 polyadenylation signal downstream of the MCS ( Figure 1 ).
  • the baculovirus expression cassette is flanked by specific restriction sites (for example Bgl II and BstZ17 l at the 5'-terminal end and Bgl II and Sgf I at the the 3'-terminal end) to facilitate subcloning into a transfer vector of a commercial baculovirus generation system (based on transposition, for example the "Bac-to-Bac ® " system (invitrogenTM), or based.
  • specific restriction sites for example Bgl II and BstZ17 l at the 5'-terminal end and Bgl II and Sgf I at the the 3'-terminal end
  • the encoding gene of the Green Fluorescence Protein (GFP) was cloned into the MCS of the cloning vector using the Nco I and Spe I restriction sites, generating the donor plasmid vector ( Figure 2 ).
  • Example 7 Generation of the transfer vector containing the baculovirus expression cassette.
  • the transfer vector was generated by digesting a donor vector with BstZ17 I of the 5'-flanking site and with Xba I and cloning it into the transfer vector pFastBacTM1 that was also digested with the same enzymes.
  • the SV40 polyadenylation signal of the baculovirus expression cassette is exchanged by the SV40 polyadenlation signal from the transfer vector.
  • all the elements of the expression cassette are included in the pFastBac transfer vector, substituting the polh promoter and MCS of the original commercial transfer vector ( Figure 2 ).
  • Example 8 Generation of the baculovirus expression vector containing the baculovirus expression cassette using the "Bac-to-Bac ® " system
  • the modified transfer vector pFastBacTM1 and the individual baculovirus expression cassette were used to generate a recombinant baculovirus by using the "Bac-to-Bac ® " Baculovirus Expression System. More specifically, the modified transfer vector was used to transform the E. coli host strain DH10BacTM that contains a baculovirus shuttle vector (bacmid) and a helper plasmid, and allows the generation of a recombinant bacmid following transposition of the expression cassette. The DNA of the recombinant bacmid containing the baculovirus expression cassette and the GFP encoding gene was then used to transfect insect cells, for example, Sf 21 cells, using Cellfectin ® .
  • Trichoplusia ni (cabbage looper) larvae were reared under level 2 biosafety conditions. Eggs were placed into specially designed larva developmental cages containing an artificial insect diet and were kept in growth chambers at 22 °C under controlled humidity (50%) and light period (8 h/day) conditions.
  • ni larvae infected by the baculoviruses were obtained by homogenization using a Bag Mixer ® blender (InterscienceTM, France) for 2 min. Extraction buffer was composed of PBS 1x, Triton X-100 at 0.01%, Complete protease inhibitor cocktail (RocheTM, Germany), and DTT 25 mM.
  • Total soluble protein fractions (10 ⁇ g) from larvae infected with the recombinant baculoviruses were resolved in 15% SDS-PAGE gels. Gels were stained by the Coomassie blue staining method or transferred to nitrocellulose membranes. Western blots were probed with the anti-GFP monoclonal antibody mab2515 (MilliporeTM, USA) or tubulin antiserum (T5168; Sigma-AldrichTM) at 1:1000 and the immunocomplexes were revealed with anti-mouse IgG-horseradish peroxidase (HRP)-labeled conjugate (KPLTM, UK), diluted 1:2,000 as a secondary antibody. Protein bands were detected using an ECL western blotting detection system and analyzed by the ChemiDocTM XRS Gel Imaging System (Bio-RadTM, USA).

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Description

    FIELD OF THE INVENTION
  • The present invention may be included in the field of biotechnology and it covers insects comprising nucleic acid sequences comprising, for example, promoters, homologous regions (hr) as enhancers, and sequences encoding transcriptional regulators, for example, the baculovirus Ac-ie-01 cDNA, or any combination thereof, which are able to increase the efficiency of recombinant protein expression, for example in insect larvae. Moreover, the present invention is also directed to methods using the above mentioned insect of the invention infected, transformed, transduced or transfected with those sequences or vectors, and methods for producing proteins by using the aforesaid insects.
  • STATE OF THE ART
  • The baculovirus expression vector system (BEVS) is a well-established method for the production of recombinant proteins to be used as vaccines, therapeutic molecules or diagnostic reagents. With its potential for over-expression and rapid speed of development, BEVS is one of the most attractive choices for producing recombinant proteins for any purpose. The most employed baculovirus vector used in industry for recombinant protein expression is based on Autographa californica multinuclear polyhedrosis virus (AcMNPV) with Spodoptera frugiperda 9 (Sf9) or 21 (Sf21) insect cells as suitable expression hosts (1), as well as Trichoplusia ni (T. ni) insect larvae as living biofactories (2). Since the BEVS was developed in the 80's (3), hundreds of recombinant proteins, ranging from cytosolic enzymes to membrane-bound proteins, have been successfully produced in baculovirus-infected insect cells.
  • Worldwide, about 70,000 tons of silk are produced annually in a process that converts a low-value substrate, the leaves of the mulberry tree, to a high-value protein-based product: silk. Insects are highly efficacious protein producers because of their accelerated metabolism. Lepidoptera such as Bombyx mori or Trichoplusia ni, are two of the most used insects in biotechnology. They grow in size about 5000 times in less than 2 weeks and produce more than a kilometer of silk per insect. While a cell from a silk gland may produce about 80 µg protein/cell/day, the best mammalian cell culture systems produces only about 50 pg protein/cell/day. Concerns arising from potential contamination by adventitious agents (such as viruses or prions) of recombinant proteins obtained from cultured mammalian cells are substantially lower, if not totally absent, in the case of insect-derived products for human or animal use. Although transgenic silkworms have been generated to produce human therapeutic proteins (4), this technology has not yet been used to produce vaccine antigens. However, genetically modified baculoviruses (Autographa californica nuclear polyhedrosis virus and Bombyx mori nucleopolyhedrovirus) have been used to generate insect-derived vaccines (insectigens). Basically, the same baculoviruses used for antigen expression in insect cell cultures can be used to infect insect larvae. Upon infection, the recombinant antigen is accumulated in insect tissues and, after 3-4 days of infection, the larvae can be processed to obtain the recombinant antigen in quantities that can reach between several hundreds of µg to several milligrams per infected larva. Experimental vaccines against animal infectious diseases have been tested with very good results, even using nonpurified soluble antigens obtained from larva, without any side effects in animals after repetitive immunization protocols (5, 6, 7, 8). Other proteins with different applications have also been produced in insects as living biofactories, such as enzymes (9, 10), antibodies (11, 12), hormones (13, 14), cytokines (15, 16) and diagnostic proteins (17, 18, 19, 20). Most of these above mentioned proteins were processed correctly after synthesis, and their functional activities remained intact in soluble larval protein extracts. Insects as living biofactories constitute a promising alternative to conventional fermentation technologies and also to plant-derived proteins because of the production versatility, scalability, efficiency and speed of development.
  • Accelerating recombinant protein expression, so that protein expression takes place before the cellular machinery of insect larvae is severely impaired by the baculovirus infection, would be an important improvement of the BEVS. Late expression, driven by the conventional strong virus promoters of polyhedrin (polh) or p10 genes, has serious disadvantages in the foreign protein post-translational modifications. Baculovirus promoters that allow for earlier expression than the conventionally used polh or p10 promoters have been characterized and been used for heterologous protein production, but showed a reduced productivity (21).
  • Another possibility for improving the BEVS would be to increase preservation of cell integrity at late times post-infection by reducing the virus-induced cell death. Reduction in the severe impairment of the insect cell machinery at late times post-infection caused by BEVS should not only increase the time frame for producing and accumulating recombinant proteins (secreted or not), but also allow more time for the folding of complex proteins or any post-translational modification of the produced proteins. Baculovirus-infected insect larvae produce and accumulate recombinant proteins during the course of infection and in a virus dose-dependent manner. A prolonged survival of the infected larvae together with a certain protection to high infectious doses would dramatically increase the productivity of insects serving as living biofactories.
  • Some baculovirus DNA elements have been determined to be involved in the activation of late expression factor genes, which are necessary for virus propagation. One of them is the immediate early (ie) protein IE-1 and its splice variant IE-0 from AcMNPV (Autographa californica multinuclear polyhedrosis virus). Translation of the AcMNPV mRNAs encoded by Ac-ie-01 cDNA results in both IE-0 and IE-1 production due to internal translation initiation. Both are thought to be critical mediators of baculovirus gene expression due to their potency as transcriptional regulators (22). Synthesized very early during infection, AcMNPV IE-1 is a 67-kDa dimeric DNA-binding protein that stimulates transcription in plasmid transfection assays through the activity of its N-terminal acidic domain (23, 24). IE-1 accumulates within the nucleus, where it is maintained through late times (25). Transactivation by IE-1 is enhanced by its binding as a homodimer to the baculovirus homologous region (hr) sequences, which function as transcriptional enhancers and origins of viral DNA replication. AcMNPV immediate early protein IE-0 (74 kDa) is identical to IE-1 except for an additional 54 amino acid residues at its N-terminus. AcMNPV IE-0 is a 72.6-kDa 636 amino acid protein composed of 38 amino acids encoded by orf141 (exon0), 16 amino acids encoded by the upstream nontranslated leader of ie1, and the entire 582 amino acid IE-1 protein. The final product is therefore identical to IE-1 except for the additional 54 amino acids fused to the N-terminus. Presumably due to their common sequences, IE-0 and IE-1 share biochemical activities, including hr enhancer binding and transcriptional regulation.
  • Given the lack of novel alternative promoters stronger than those commercially used (polh and p10) and of any alternative to implement long-term expression in the baculovirus system by reducing virus-induced cell damage, the present invention is focused on solving said problems by means of the incorporation of recombinant DNA elements in baculovirus expression cassettes. The present invention surprisingly shows that said expression cassettes, containing baculovirus transcriptional regulators, an enhancer homologous region (hr) sequence and a promoter or a combination of promoters are able to increase recombinant protein production to unprecedented levels in insect larvae. Additionally, the expression cassettes as described also increase the survival rate of baculovirus-infected insect larvae at late times post-infection using high infectious doses, thus minimizing the pathogenicity effect in insects caused by the baculovirus infection. On the other hand, an improvement in the integrity of cell functions during baculovirus infection also contributes to the correct recombinant protein posttranslational processing in insect larvae.
  • V.J. Valdes et al. disclose the use of double-stranded RNA to prevent in vitro and in vivo viral infections by recombinant baculovirus (V.J.Valdes et al., Journal of Biological Chemistry, Vol. 278, No. 21 16 May 2003, pages 19317 - 19234). EP1 811 027 discloses polynucleotides for the production of recombinant proteins in silkworm.
  • SUMMARY OF THE INVENTION
  • The present invention provides products and methods for the improved expression of recombinant proteins in baculovirus-infected insect larvae, as also defined in the claims:
    1. 1. Insect derived from the genus Lepidoptera, comprising nucleic acid elements introduced into the insect by a recombinant baculovirus containing an endogenous Ac-ie-01 gene, wherein said nucleic acid elements comprise
      1. (a) a further copy of baculoviral Ac-ie-01 cDNA as transgene under the control of a suitable promoter that allows for the expression of the proteins IE-1, IE-0 and/or fragments thereof functioning as transcriptional regulators above endogenous levels obtained during baculovirus infection, wherein the nucleic acid is selected from the group consisting of:
        1. i. a nucleic acid containing the nucleotide sequence indicated in any of SEQ ID NO: 1-5;
        2. ii. a nucleic acid sequence having a sequence identity of at least 70%, preferably at least 75%, more preferably at least 80%, more preferably at least 85%, more preferably at least 90% and most preferably at least 95% with the nucleotide sequence indicated in any of SEQ ID NO: 1-5 and encoding a protein able to function as a transcriptional regulator in a recombinant baculovirus;
        3. iii. a nucleic acid sequence encoding an amino acid containing the amino acid sequence indicated in any of SEQ ID NO: 6-9; and
        4. iv. a nucleic acid sequence encoding an amino acid sequence having a sequence similarity of at least 70%, preferably at least 75%, more preferably at least 80%, more preferably at least 85%, more preferably at least 90% and most preferably at least 95% with the amino acid sequence indicated in any of SEQ ID NO: 6-9 and able to function as a transcriptional regulator in a recombinant baculovirus;
      2. (b) wherein the insect further comprises at least one recombinant homologous region (hr) as enhancer region, operably linked to any promoter that is suitable for driving the expression of a recombinant protein,
      3. (c) wherein the promoter that drives the expression of said recombinant protein is selected from the group of nucleic acids comprising:
        1. i. a nucleic acid containing the nucleotide sequence indicated in any of SEQ ID NO: 10-16; and
        2. ii. a nucleic acid sequence able to function as a promoter in a recombinant baculovirus and having a sequence identity of at least 70%, preferably at least 75%, more preferably at least 80%, more preferably at least 85%, more preferably at least 90% and most preferably at least 95% with the nucleotide sequence indicated in any of SEQ ID NO: 10-16.
    2. 2. Insect according to item 1, wherein the recombinant homologous region (hr) is the sequence indicated in SEQ ID NO: 27 (hr1).
    3. 3. Insect according to any of the items 1-2, wherein the nucleic acid sequence that comprises combinations of recombinant promoters, sequences encoding transcriptional regulators and enhancer regions are selected from the group comprising SEQ ID NO: 17-26.
    4. 4. Insect according to any of the items 1-3, wherein the insect is selected from the group consisting of Trichoplusia ni, Spodoptera frugiperda, Spodoptera exigua, Ascalapha odorata, Bombyx mori, Rachiplusia ni and Estigmene acrea.
    5. 5. Insect according to any of the items 1-4, wherein the nucleic acid sequence(s) is introduced into the insect by a recombinant baculovirus selected from AcMNPV or BmNPV.
    6. 6. Insect according to any of the items 1-5, further comprising a nucleic acid sequence encoding a recombinant protein, wherein said nucleic acid sequence is operably linked to a nucleic acid sequence selected from the group consisting of the nucleic acid sequences of items 1-3.
    7. 7. Method for producing a recombinant protein that comprises the use of an insect of item 6 and the extraction and purification of the recombinant protein by conventional means.
    8. 8. Method for producing a recombinant protein according to item 7, wherein the recombinant protein is selected from the group comprising subunit monomeric vaccine, subunit multimeric vaccine, virus like particle, therapeutic protein, antibody, enzyme, cytokine, blood clotting factor, anticoagulant, receptor, hormone or diagnostic protein reagent.
    BRIEF DESCRIPTION OF THE FIGURES
    • Figure 1 : Schematic representation of the baculovirus recombinant DNA elements of the invention, comprising four principal elements: a sequence encoding for transcriptional regulators (A; e.g. IE0 and IE1), which expression is driven by a promoter (B; e.g. polh or pB29); an enhancer homologous region (hr) sequence (C; e.g. hr1), upstream of the promoters (D; e.g. p10, pB29p10 or p6.9p10) driving the expression of the foreign gene coding for the recombinant protein. The scheme shows the theoretical mechanism of interaction between the recombinant DNA elements of the present invention that results in the unprecedented overexpression of the recombinant protein.
    • Figure 2 : Different strategies that result in the generation of recombinant baculoviruses by the "Bac-to-Bac®" cloning system (invitrogen™).
    • Figure 3 : General scheme for the generation of cloning, donor and transfer vectors compatible with other commercial technologies used to generate recombinant baculoviruses.
    • Figure 4 : A) Recombinant GFP production 96 hours post-infection in Trichoplusia ni insect larvae (fifth instar) inoculated with 500 or 50,000 PFUs of a conventional baculovirus expressing the protein under the control of the polh promoter or by a baculovirus containing the baculovirus cassette of the invention polh Ac-ie-01/hr1p6.9p10GFP. B) Percentage of larvae surviving 96 hours post-infection with the same baculoviruses as in panel A and at two different infectious doses, i.e. 500 and 50,000 PFUs.
    • Figure 5 : A) Percentage of larvae surviving 96 hours post-infection with the baculovirus containing the expression cassette of the present invention polhAc-ie-01/hr1p6.9p10GFP with respect to a conventional baculovirus (polhGFP) at different infectious doses. B) Insect biomass at the moment of infection with a conventional baculovirus (polhGFP) or with a baculovirus containing the expression cassette of the present invention (polhAc-ie-01/hr1p6.9p10GFP) and the recovered biomass 96 hours post-infection. The infectious dose was 5 x 104 PFUs.
    • Figure 6 : A) Percentage of larvae surviving 96 hours post-infection using 5 x 104 PFUs as the infectious dose of the baculovirus overexpressing the Ac-ie-01 cDNA under the polh promoter (polhAc-ie-01) or using a conventional baculovirus expressing GFP under the polh promoter (polhGFP). B) Insect biomass at the time of infection with the same baculoviruses as in panel A and the recovered biomass at 96 hours post-infection. The infectious dose was 5 x 104 PFUs.
    • Figure 7 : Comparison of the recombinant GFP protein expressed by a conventional baculovirus under the control of the polh promoter (2) or by a baculovirus containing the expression cassette of the present invention polhAc-ie-01/hr1p6.9p10GFP (1). Extracts from larvae infected with 5 x 105 PFUs of every baculovirus were obtained 96 hours post-infection. A) Coomassie blue staining of the recombinant GFP protein. B) Cell integrity after baculovirus infection determined by tubulin detection with a specific antiserum. C) Western blot detection of recombinant GFP protein by using a specific anti-GFP serum.
    • Figure 8 : Schematic representation of the preferred elements contained in the baculovirus expression cassettes of the invention, comprising encoding sequences for transcriptional regulators, homologous regions (hr) enhancing the transcription induced by promoter(s) of a foreign gene encoding a recombinant protein.
    DETAILED DESCRIPTION OF THE INVENTION
  • The present invention improves the expression of recombinant proteins by means of the introduction of recombinant DNA elements into insects.
  • These recombinant DNA elements of the present disclosure are sequences that cause the expression of baculovirus transcriptional regulators above endogenous levels and optionally enhancer homologous regions (hr) and promoters operably linked to these aforementioned elements.
  • Furthermore, the recombinant DNA elements may form part of an expression cassette.
  • "Expression cassette" refers to a nucleic acid sequence that contains recombinant DNA elements, which control (e.g. the promoter) and/or are required (e.g. the gene itself) for gene expression. The expression cassette can be introduced in a recombinant vector or baculovirus.
  • The recombinant DNA elements may be incorporated in a single nucleic acid sequence, cloning vector, transfer vector, recombinant baculovirus or cell. However, they can also be present in different nucleic acid sequences, cloning vectors, transfer vectors or recombinant baculoviruses and be introduced into the same cell.
  • The present invention surprisingly shows that introduction into insect larvae of sequences that cause the expression of baculovirus transcriptional regulators above endogenous levels obtained during baculovirus infection and the introduction of an enhancer homologous region (hr) sequence, a promoter or a combination of promoters is able to increase the production of a recombinant protein to unprecedented levels. This indicates the usefulness of this system for the expression of recombinant proteins in vivo.
  • Additionally, the introduction of these recombinant DNA elements into insect larvae with baculoviruses increases the survival rate of the larvae late after infection, especially after using high virus doses for infection (maximizes the recovered amount of biomass, i.e. the productivity of the system), as compared to larvae infected with a conventional baculovirus. The insect biomass recovered at the end of the production process is significantly increased as well.
  • Also, the integrity of the molecular cell machinery and cell morphology of said baculovirus-infected larvae is improved as compared to larvae infected with a conventional baculovirus. An improvement in the integrity of cell functions during baculovirus infection also contributes to the correct post-translational processing of the recombinant protein.
  • Thus, one aspect of the invention relates to an insect as defined the claims that contains a nucleic acid sequence that allows for the expression above endogenous levels of transcriptional regulators obtained during baculovirus infection. The transcriptional regulators are IE-1, IE-0 and/or fragments thereof.
  • "Transcriptional regulator" refers to a regulatory protein that has the ability to modulate the transcription of specific genes by, for example, binding to enhancer or repressor regions and/or recruiting further proteins that are involved in transcription.
  • IE-1 and its splice variant IE-0 are transcriptional regulators that are endogenously expressed during baculovirus infection. According to the present invention, IE-1, IE-0 and/or fragments thereof are recombinantly expressed to increase the total level of these proteins above endogenous levels. This is achieved through introducing further copies of the endogenous gene. Further copies of the endogenous genes can be introduced as transgenes under the control of a suitable promoter such as polh or pB29.
  • The expression level of the proteins IE-1, IE-0 and/or fragments thereof can be determined at both the mRNA and at the protein level with methods conventionally known to the person skilled in the art, such as quantitative PCR and Western Blot analysis.
  • According to the invention, IE-1, IE-0 and fragments thereof are encoded by the nucleic acids of SEQ ID NO: 1 (also referred to as Ac-ie-01) to SEQ ID NO: 5. SEQ ID NO: 1 is the Ac-ie-01 cDNA that encodes both IE-1 and IE-0, SEQ ID NO: 2 is the coding sequence (CDS) of IE-1 and SEQ ID NO: 3 is the CDS of IE-0. SEQ ID NO: 4 and 5 are the CDSs of the N-terminal domains of IE-1 and IE-0 respectively that retain the catalytic transcriptional regulator activity. The proteins that are encoded by SEQ ID NO: 2-5 are represented by SEQ ID NO: 6-9 respectively.
  • The present disclosure furthermore discloses variants of SEQ ID NO: 1-9 that are or encode amino acids that are able to function as a transcriptional regulator. These variants are nucleic or amino acids whose nucleotide or amino acid sequence differs in one or more positions from these parental nucleic or amino acids, whereby differences might be additions, deletions and/or substitutions of nucleotides or amino acid residues.
  • Nucleic and amino acid sequences of the disclosure shall be distinguished from other nucleic and amino acid sequences by their degree of sequence identity or similarity respectively as determined using EMBOSS Needle with the default parameters (http://www.ebi.ac.uk/Tools/psa/emboss_needle/). Methods for the generation of such variants include random or site directed mutagenesis, site-saturation mutagenesis, PCR-based fragment assembly, DNA shuffling, homologous recombination in vitro or in vivo, and methods of gene-synthesis.
  • The sequence of the variants of SEQ ID NO: 1-5 is at least 70%, preferably at least 75%, more preferably at least 80%, more preferably at least 85%, more preferably at least 90% and most preferably at least 95% identical to the sequences of SEQ ID NO: 1-5.
  • The sequence of the variants of SEQ ID NO: 6-9 is at least 70%, preferably at least 75%, more preferably at least 80%, more preferably at least 85%, more preferably at least 90% and most preferably at least 95% similar to the sequences of SEQ ID NO: 6-9.
  • The insect is a lepidopter preferably selected from the group consisting of Trichoplusia ni, Spodoptera frugiperda, Spodoptera exigua, Ascalapha odorata, Bombyx mori, Rachiplusia ni and Estigmene acrea. In a preferred embodiment, the insect is a larva.
  • The insect of the present invention further contains, in addition to the nucleic acid sequence that allows for the expression above endogenous levels of the proteins IE-1, IE-0 and/or fragments thereof, a recombinant homologous region (hr) that can enhance the expression of a recombinant protein by being operably linked to the respective promoter.
  • Homologous regions, hr, are comprised of repeated units of about 70-bp with an imperfect 30-bp palindrome near their center. Homologous regions are repeated at eight locations in the AcMNPV genome with 2 to 8 repeats at each side. Homologous regions have been implicated as both transcriptional enhancers and origins of baculovirus DNA replication.
  • "Enhancer region" refers to a control sequence, whose binding by transcriptional regulators increases the level of transcription of associated genes.
  • "Recombinant protein" refers to a protein that originates from recombinant DNA. Such proteins can be used for the benefit of humans and animals and may have industrial, commercial or therapeutic application.
  • "Being operably linked" refers to two nucleic acid sequences that are connected in a way that one influences the other in terms of, for example, transcriptional regulation.
  • "Promoter" refers to a DNA sequence to which RNA polymerase can bind to initiate transcription. The sequence may further contain binding sites for various proteins that regulate transcription, such as transcription factors. The promoter sequence may be composed of different promoter fragments (either different or the same fragments) that are localized closely in the DNA sequence and may be separated by linkers or spacer. Such promoters are referred to as chimeric promoters.
  • The enhancer homologous region sequence hr upstream of the promoter/s is preferably hr1 (SEQ ID NO: 27). The promoters that drive the expression of the recombinant protein are selected from the group comprising SEQ ID NO: 10-16 or a sequence that is able to function as a promoter and has at least 70%, preferably at least 75%, more preferably at least 80%, more preferably at least 85%, more preferably at least 90% and most preferably at least 95% identity with the nucleotide sequence indicated in any of SEQ ID NO: 10-16.
  • In a preferred embodiment, the nucleic acid sequence comprises combinations of recombinant promoters, sequences encoding transcriptional regulators and enhancer regions selected from the group comprising SEQ ID NO: 17-26.
  • As indicated above, the recombinant promoters, sequences encoding transcriptional regulators and enhancer regions do not need to form part of a single molecule, instead these sequences may form part of distinct molecules as long as they are operably linked, i.e. contained within the same cells.
  • The insect of the present invention preferably comprises a nucleic acid sequence encoding a recombinant protein. This nucleic acid sequence is operably linked to the nucleic acid sequence that allows for the expression above endogenous levels of the proteins IE-1, IE-0 and/or fragments thereof and to a homologous region (hr).
  • The above described recombinant DNA elements are introduced into the insect by a recombinant baculovirus. Preferably, the baculovirus is AcMNPV or BmNPV and the insect an insect larva. The baculovirus is administered to the larva by oral administration (per os) or more preferably by injection. In a further embodiment the insect is infected, transfected, transduced or transformed with the recombinant baculovirus, transfer vector, cloning vector or nucleic acid sequence of the present invention. Preferably, the insect larvae are reared in a rearing module, such as described in the patent application ES 2 232 308 .
  • In a further aspect, the invention discloses methods for producing a recombinant protein using the insect of the present invention. To this end, an insect can be infected, transfected, transduced or transformed with the recombinant baculovirus, transfer. vector, cloning vector or nucleic acid sequence. After expression of the recombinant protein, extraction and purification of the recombinant protein is done by conventional means.
  • In a preferred aspect for protein production, the larvae are infected by injecting a high virus dose (higher than 104 Plaque Forming Units) of the recombinant bacutovirus 3-4 days after infection, the infected larvae are processed and the whole soluble protein extract is obtained by the use of appropriate extraction buffers. Extracts are centrifuged and the lipid fraction eliminated. Then, the recombinant protein is purified by conventional means.
  • The recombinant protein that is preferably produced by the methods of the present invention is a protein selected from the group comprising subunit monomeric vaccine, subunit multimeric vaccine, virus like particle, therapeutic protein, antibody, enzyme, cytokine, blood clotting factor, anticoagulant, receptor, hormone or diagnostic protein reagent
  • One aspect of the disclosure relates to the use of the recombinant baculovirus, transfer vector, cloning vector or nucleic acid sequence of the invention in a rearing, feeding or injection medium for an insect.
  • The present disdosure relates to a baculovirus that can be used to produce the insect of the present invention and comprises said sequence for expression above endogenous levels of the proteins IE-0, IE-1 and/or fragments thereof.
  • "Baculovirus" refers to a family of infectious viruses for invertebrates, mainly infecting insects and arthropods. A "recombinant baculovirus" has further introduced recombinant DNA through, for example, homologous recombination or transposition. The recombinant baculovirus preferably originates from AcMNPV (Autographa californica nuclear polyhedrosis virus) or BmNPV (Bombyx mori nucleopolyhedrovirus).
  • "Recombinant DNA" refers to a form of artificial DNA that is engineered through the combination or insertion of one or more DNA strands, thereby combining DNA that would normally not occur together.
  • "Recombinant DNA element" refers to a functional element within recombinant DNA, such as a promoter, enhancer or a gene. As mentioned above, the recombinant DNA elements of the present invention are sequences that cause the expression of baculovirus transcriptional regulators above endogenous levels, enhancer homologous regions (hr) and promoters operably linked to these aforementioned elements. Preferably, the baculovirus transcriptional regulators IE-1, IE-0 or fragments thereof are expressed above endogenous levels obtained during baculovirus infection.
  • The recombinant baculovirus contains in addition to (i) the sequence for expression above endogenous levels of the proteins IE-0, IE-1 and/or fragments thereof, (ii) a recombinant homologous region (hr) linked to (iii) a suitable promoter for driving the expression of a recombinant protein. The preferred combinations of these recombinant DNA elements are as described above for the insects. Furthermore, the recombinant baculovirus preferably contains a nucleic acid sequence encoding a recombinant protein.
  • The present disclosure further related to a transfer vector that can be used to produce the insec of the present invention and/or a recombihant baculovirus and comprises said sequence for expression above endogenous levels of the proteins IE-0, IE-1 and/or fragments thereof, in addition to a sequence suitable for Integration or transposition in a baculovirus.
  • Transfer vectors generally permit the insertion of genetic information into a baculovirus.
  • The transfer vector preferably contains in addition to (i) the sequence for expression above endogenous levels of the proteins IE-0, IE-1 and/or fragments thereof, (ii) a recombinant homologous region (hr) linked to (iii) a suitable promoter for driving the expression of a recombinant protein. The preferred combinations of these recombinant DNA elements are as described above for the insects.
  • In one preferred aspect, the transfer vector comprises a nucleic acid sequence encoding said recombinant protein, whereas in another preferred embodiment the transfer vector lacks such sequence.
  • In a preferred embodiment, the transfer vector is a bacmid.
  • "Bacmid" refers to a plasmid construct which contains the DNA sequence sufficient for generating a baculovirus when transfected into a cell.
  • In a further preferred aspect, the transfer vector is derived from any of the commercially available baculovirus expression systems "Bac-to-Bac®" (invitrogen™), "BacPAK™" (Clontech™), "FlashBAC™" (Oxford Expression Technologies™), "BacuVance™" (GenScript™). "Bac-N-Blue DNA™" (invitrogen™), "BaculoDirect™" (invitrogen™), "BacVector®" 1000, 2000, 3000 (Novagen®), "DiamondBac™" (Sigma-Aldrich®) or "BaculoGold™" (BD biosciences™).
  • The present disclosure further relates to a cloning vector that can be used to produce the insect of the present invention a recombinant baculovirus and/or transfer vector and comprises said sequence for expression above endogenous levels of the proteins IE-0, IE-1 and/or fragments thereof, which is further suitable for bacterial replication.
  • "Cloning vector" refers to any vector that is suitable for cloning, which generally involves the presence of restriction sites, an origin of replication for bacterial propagation and a selectable marker.
  • The cloning vector preferably contains in addition to (i) the sequence for expression above endogenous levels of the proteins IE-0, IE-1 and/or fragments thereof, (ii) a recombinant homologous region (hr) linked to (iii) a suitable promoter for driving the expression of a recombinant protein. The preferred combinations of these recombinant DNA elements are as described above for the insects.
  • In one preferred aspect, the cloning vector comprises a nucleic acid sequence encoding said recombinant protein (also referred to as the "donor vector"), whereas in another preferred aspect the cloning vector lacks such sequence.
  • The present disclosure also relates to a nucleic acid sequence that can be used to produce the insect, recombinant baculovirus, transfer vector and/or cloning vector and comprises said sequence for expression above endogenous levels of the proteins IE-0, IE-1 and/or fragments thereof.
  • The nucleic acid sequence preferably contains in addition to (i) the sequence for expression above endogenous levels of the proteins IE-0, IE-1 and/or fragments thereof, (ii) a recombinant homologous region (hr) linked to (iii) a suitable promoter for driving the expression of a recombinant protein. The preferred combinations of these recombinant DNA elements are as described above for the insects.
  • In one preferred aspect, the nucleic acid sequence comprises a nucleic acid sequence encoding said recombinant protein, whereas in another preferred embodiment the nucleic acid sequence lacks such sequence. SUMMARY OF SEQUENCES
    SEQ ID NO: Name:
    1 Complete Ac-ie-01 c DNA
    2 Protein coding sequence (CDS) of IE-1
    3 CDS of IE-0
    4 CDS of the IE-1 N-terminal domain
    5 CDS of the IE-0 N-terminal domain
    6 IE-1 protein
    7 IE-0 protein
    8 IE-1 N-terminal domain protein
    9 IE-0 N-terminal domain protein
    10 polh (promoter)
    11 p10 (promoter)
    12 pB29p10 (promoter)
    13 p6.9p10 (promoter)
    14 pB29 (promoter)
    15 pB2p10 (promoter)
    16 polhp10 (promoter)
    17 polhAc-ie-01/hr1p10
    18 polhAc-ie-01/hr1pB29p10
    19 polhAc-ie-01/ hr1p6.9p10
    20 pB29Ac-ie-01lhr1p10
    21 pB29Ac-ie-01/hr1pB29p10
    22 pB29Ac-ie-01/hr1p6.9p10
    23 polhAc-ie-01/hr1polh
    24 pB29Ac-ie-01/hr1polh
    25 polhAc-ie-01/hr1polhp10
    26 pB29Ac-ie-01/hr1polhp10
    27 Homologous region enhancer hr1
    28 polhAc-ie-01
    29 polhGFP
  • DEPOSITION OF MICROORGANISMS ACCORDING TO THE BUDAPEST TREATY
  • Plasmids were deposited in the Spanish Type Culture Collection (CECT) (www.cect.org); University of Valencia, Parc Científic Universitat de València; Catedrático Agustín Escardino, 9; 46980 Paterna (Valencia), Spain, with the accession number CECT 8031, on the date October 4, 2011.
  • EXAMPLES Example 1. Overexpression of baculovirus transcriptional regulators potentiates the enhancer function of a homologous region hr functionally linked to a promoter increasing recombinant protein expression in a baculovirus vector expression system (BEVS).
  • Immediate early viral proteins encoded by the Ac-ie-01 cDNA, i.e. IE-1 and IE-0, from AcMNPV are potent transcriptional regulators in baculoviruses. Transactivation mediated by these proteins is enhanced by their binding as a homodimer to the baculovirus homologous region (hr) sequences, which act as transcriptional enhancers. AcMNPV IE-1/IE-0 are 67-72 kDa dimeric DNA-binding proteins that stimulate transcription in plasmid transfection assays through the activity of their N-terminal acidic domain (7, 8). Synthesized very early during infection, IE-1 and IE-0 accumulate within the nucleus, where they are maintained through late times. Using the dual plasmid pFastBac™ (invitrogen™), the Ac-ie-01 cDNA was cloned under the control of the polh promoter. In the same plasmid, but in another locus, the GFP encoding gene was cloned downstream of the hr1p6.9p10 chimeric promoter that was previously synthesized and contains the homologous region hr1 fused to the promoters p6.9 and p10. A schematic representation of the resulting baculovirus expression cassette of the present invention and the putative function of the recombinant DNA elements is shown in Figure 1 . The resulting plasmid was used to generate a recombinant baculovirus by the "Bac-to-Bac®" system (invitrogen™). In parallel, a conventional baculovirus expressing the GFP protein under the control of polh promoter was generated by the same system.
  • The expression of GFP protein mediated by the different baculoviruses was studied by fluorimetry at 96 hours post-infection in Trichoplusia ni larvae using a low or high infectious dose (5 x 102 or 5 x 104 respectively). The expression level of GFP was increased in larval extracts by the baculovirus containing above expression cassette by about 13 to more than 40% depending on the virus dose used ( Figure 4A ). Similar results were observed by using baculoviruses in which the Ac-ie-01 cDNA was expressed under the control of the insect-derived pB29 promoter or when the GFP was expressed under the control of the hr1pB29p10 promoter (data not shown).
  • Example 2. The baculovirus expression cassettes increase the baculovirus-infected insect larvae surviving rates and insect biomass recovered using high infectious doses through the transcriptional regulators encoded by the Ac-ie-01 cDNA
  • In the previous example an advantage of baculoviruses expressing the recombinant protein in the context of the baculovirus cassette in terms of protein productivity was shown. However, the main difference observed was in respect to the percentage of surviving larvae at high infectious doses (maximum productivity). Under such infection conditions, the baculovirus containing the expression cassette increased by about 70% the larvae survival rates ( Figure 4B ). This means that by using a conventional baculovirus the optimal infection conditions were using an infectious dose of 5 x 102 PFUs (maximum larvae surviving rate). In contrast, by using a baculovirus containing the expression cassette, a dose of 5 x 104could be used, recovering the same number of larvae at the end of the production process ( Figure 4B ). Under such optimal production conditions (infection with 5 x 104 PFUs), the baculovirus containing the expression cassette yields more than twice the amount of recombinant protein produced in insect larvae infected with the optimal dose for the conventional baculovirus (5 x 102 PFUs) ( Figure 4 A and B).
  • Larvae infection studies using different infectious doses of a conventional baculovirus (polhGFP) or a baculovirus containing the expression cassette polhAc-ie-01/hr1p6.9p10GFP, both expressing the GFP proteins, revealed increasing surviving rates of infected larvae when the baculovirus containing the expression cassette was used ( Figure 5A ). At the highest infectious dose (5 x 104) the survival rate of larvae infected with the expression cassette increased by more than 70% as compared to larvae infected with a conventional baculovirus. This increase in infected larvae surviving rates had direct dramatic consequences in the insect biomass recovered at the end of the production process, with a 80% increase when the baculovirus containing the expression cassette was used at the highest infectious dose (maximum productivity) ( Figure 5B ).
  • To determine the genetic element/s responsible for such interesting properties related to the increase of survival rates after infection with high doses of the baculovirus, a recombinant baculovirus expressing the transcriptional regulators encoded by the Ac-ie-01 cDNA under the control of the polh promoter was generated. Then, T. ni larvae were infected with a high infectious dose (5 x 104 PFUs) of this baculovirus. As control, we used a baculovirus expressing the GFP protein under the control of the same promoter. Similarly to the larvae infected with the expression cassette polhAc-ie-01/hr1p6.9p10GFP, larvae infected with the baculovirus overexpressing the Ac-ie-01 cDNA (polhAc-ie-01) also showed increased survival rates when compared with larvae infected with a conventional baculovirus expressing the GFP reporter protein under the control of the same promoter (polhGPF) ( Figure 6A ). This strongly suggests that the overexpression of the transcriptional regulators used in the baculovirus expression cassette protects the insect larvae from the baculovirus-induced mortality, allowing long-term expression (more recombinant protein production) and increasing the insect biomass recovery using high infectious doses (maximum productivity) ( Figure 6B ).
  • Example 3. Overexpression in a baculovirus expression system of transcriptional regulators encoded by the Ac-ie-01 cDNA facilitates the post-translational processing of recombinant proteins in infected insect larvae used as biofactories.
  • Cellular integrity during baculovirus infection is of great importance to ascertain the correct folding or any other post-transiational modification of foreign proteins expressed by this system. The baculovirus strong promoters commonly used for research and production, such as polh and p10, only express the foreign genes at late times post-infection when infected cells already show severe cytopathic effects and the cellular viability decreases. As described above, the overexpression of the transcriptional regulators used in the baculovirus expression cassette protects cells from pathogenic effects of the baculovirus infection, allowing a wide temporal window for recombinant protein production in cells remaining fully viable.
  • The relevance of the recombinant DNA elements incorporated into the expression cassette in relation to post-translational modifications of recombinant proteins in insect larvae as living biofactories was studied. For this purpose, a conventional baculovirus expressing the reporter protein GFP under the control of the polh promoter and a baculovirus incorporating the baculovirus cassette and also expressing the GFP protein (polhAc-ie-01/hr1p6.9p10GFP) were used to infect insect larvae at a dose of 5 x 104 PFUs.
  • Infected larvae extracts were analysed at 96 hours post-infection by SDS-PAGE gels and Coomassie blue staining ( Figure 7A ). Interestingly, GFP protein expressed by a conventional baculovirus showed a band with a reduced molecular weight (lower than predicted), suggesting degradation or misfolding of the recombinant protein. In contrast, when the GFP protein expression was mediated by the baculovirus expression cassette the GFP band presented the expected molecular weight of this protein, i.e. about 27 kDa.
  • The infected larvae extracts were also analyzed by Western blot using anti-GFP monoclonal antibody (mab2515; Millipore™) (Figure 7C). The GFP protein was detected in larvae extracts infected by both baculoviruses, but showed a difference in electrophoretic mobility of the recombinant protein as observed by Coomassie blue staining.
  • In parallel, the integrity of the cell machinery was measured at different times post-infection by Western blot analysis of the cellular tubulin protein using a specific antiserum ( Figure 7B ). Infection with a conventional baculovirus impaired severely the cell integrity at 96 hours post-infection since the tubulin band detected decreased dramatically after this time point (degradation as a result of a complete loss of cell integrity). Consistent with the cellular protection induced by the recombinant DNA elements contained in the baculovirus expression cassette, cellular tubulin was not equally affected in cells infected by the recombinant baculovirus engineered with the expression cassette.
  • Example 4. Cell culture and viruses.
  • The Spodoptera frugiperda Sf21 or Sf9 cell lines were cultured in 6-well tissue culture plates (1x106 cells/well) in TNM-FH insect medium (Pan Biotech™, Germany) containing 10 % heat-inactivated fetal bovine serum (Pan Biotech™, Germany) at 27°C. AcMNPV recombinant baculoviruses were obtained by the "Bac-to-Bac®" Baculovirus Expression System (invitrogen™, USA). Different transfer vectors containing the recombinant DNA elements of the invention were generated using the pFastBac™-DUAL plasmid (invitrogen™). The promoters and regulatory elements incorporated into pFastBac™-DUAL were synthesized (GenScript™, USA) with the adequate flanking restriction sequences to facilitate the cloning. These transfer vectors were used to transfect Sf21 cells with Cellfectin® (invitrogen™, USA). The resulting recombinant baculoviruses from the infection of Sf21 cells were then passaged twice in cells and titered by the plaque assay method. The obtained gene constructs of the baculovirus expression cassettes are schematically shown in Figure 8 , showing different potential combinations of promoters driving the expression of the Ac-ie-01 cDNA or the foreign gene (e.g. GFP). The different expression cassettes were used to generate the recombinant baculoviruses used in the examples shown in Figures 4 to 7 .
  • Example 5. Generation of the cloning vector
  • The cloning vector is a small piece of DNA containing the baculovirus expression cassette into which a foreign DNA fragment can be inserted by treating the vehicle and the foreign DNA with a restriction enzyme that creates the same overhang, then ligating the fragments together. The essential characteristics of the cloning vector must include a synthetic multiple cloning site (MCS) to facilitate the insertion of foreign genes directed in a chosen orientation, a selectable marker, such as an antibiotic resistance to allow the selection of positively transformed cells and a functional origin of replication (ORI) for propagation in bacteria.
  • Example 6. Generation of the donor vector containing the baculovirus expression cassette
  • A donor vector consists of a cloning vector, for example a pUC57 plasmid, containing the baculovirus expression cassette, into which a foreign gene has been cloned using the appropriate restriction enzymes. The baculovirus expression cassette was synthesized by ligating the following DNA sequences: (i) the baculovirus transcriptional regulator encoding sequence Ac-ie-01 downstream of a promoter sequence, such as the polh or the pB29 promoter, and upstream of the HSV TK polyadenylation signal and (ii) in another locus an enhancer sequence, for example, the homologous region hr1, upstream of (iii) a promoter sequence, for example, pB29p10, p10, p6.9p10 or polh, followed by a multiple cloning site (MCS) for cloning the gene of interest and the SV40 polyadenylation signal downstream of the MCS ( Figure 1 ). The baculovirus expression cassette is flanked by specific restriction sites (for example BglII and BstZ17l at the 5'-terminal end and Bgl II and Sgf I at the the 3'-terminal end) to facilitate subcloning into a transfer vector of a commercial baculovirus generation system (based on transposition, for example the "Bac-to-Bac®" system (invitrogen™), or based. on homologous recombination, for example "flashBAC™" (Oxford Expression Technologies™), "Baculogold™" (BD Biosciences™), "BacPAK6™" (Clontech™), "Bac-N-Blue DNA™" (invitrogen™)) ( Figure 2 and 3 ).
  • The encoding gene of the Green Fluorescence Protein (GFP) was cloned into the MCS of the cloning vector using the Nco I and Spe I restriction sites, generating the donor plasmid vector ( Figure 2 ).
  • Example 7. Generation of the transfer vector containing the baculovirus expression cassette.
  • The transfer vector was generated by digesting a donor vector with BstZ17 I of the 5'-flanking site and with Xba I and cloning it into the transfer vector pFastBac™1 that was also digested with the same enzymes. In this case, as a result of the subcloning, the SV40 polyadenylation signal of the baculovirus expression cassette is exchanged by the SV40 polyadenlation signal from the transfer vector. Apart from this, all the elements of the expression cassette are included in the pFastBac transfer vector, substituting the polh promoter and MCS of the original commercial transfer vector ( Figure 2 ).
  • Example 8. Generation of the baculovirus expression vector containing the baculovirus expression cassette using the "Bac-to-Bac®" system
  • The modified transfer vector pFastBac™1 and the individual baculovirus expression cassette were used to generate a recombinant baculovirus by using the "Bac-to-Bac®" Baculovirus Expression System. More specifically, the modified transfer vector was used to transform the E. coli host strain DH10Bac™ that contains a baculovirus shuttle vector (bacmid) and a helper plasmid, and allows the generation of a recombinant bacmid following transposition of the expression cassette. The DNA of the recombinant bacmid containing the baculovirus expression cassette and the GFP encoding gene was then used to transfect insect cells, for example, Sf21 cells, using Cellfectin®. 72 hours post-transfection, cells were harvested and the first recombinant baculovirus generation was obtained (Figure 2). This recombinant baculovirus could then be further amplified and/or titered following conventional protocols. Similar procedures can be used to generate recombinant baculoviruses with other transfer vectors provided by commercial BEVSs ( Figure 3 ).
  • Example 9. Rearing and infection of insect larvae.
  • Trichoplusia ni (cabbage looper) larvae were reared under level 2 biosafety conditions. Eggs were placed into specially designed larva developmental cages containing an artificial insect diet and were kept in growth chambers at 22 °C under controlled humidity (50%) and light period (8 h/day) conditions.
  • Fifth-instar larvae (last instar larvae before pupation), were used for all infection experiments. The standard weight of each larva was approximately 120-130 mg and larvae were injected near the proleg (forward of the body cavity) with 5 µl of recombinant baculoviruses diluted to reach the number of plaque forming units (PFU) per dose selected. Larvae were processed at 96 hpi. The larvae collected were frozen immediately to be stored at -20°C until they were processed for recombinant protein quantification. Total soluble, non-denatured proteins (TSNDPs) from frozen T. ni larvae infected by the baculoviruses were obtained by homogenization using a Bag Mixer® blender (Interscience™, France) for 2 min. Extraction buffer was composed of PBS 1x, Triton X-100 at 0.01%, Complete protease inhibitor cocktail (Roche™, Germany), and DTT 25 mM.
  • Example 10. Fluorimetric analysis.
  • About 20 µg of total soluble proteins derived from infected cells, containing different amounts of recombinant GFP protein, were analyzed and quantified by a Tecan™ GENios™ (CA, USA) fluorescence plate reader (excitation [Ex], 485/emission [Em], 535).
  • Example 11. Western blot analysis.
  • Total soluble protein fractions (10 µg) from larvae infected with the recombinant baculoviruses were resolved in 15% SDS-PAGE gels. Gels were stained by the Coomassie blue staining method or transferred to nitrocellulose membranes. Western blots were probed with the anti-GFP monoclonal antibody mab2515 (Millipore™, USA) or tubulin antiserum (T5168; Sigma-Aldrich™) at 1:1000 and the immunocomplexes were revealed with anti-mouse IgG-horseradish peroxidase (HRP)-labeled conjugate (KPL™, UK), diluted 1:2,000 as a secondary antibody. Protein bands were detected using an ECL western blotting detection system and analyzed by the ChemiDoc™ XRS Gel Imaging System (Bio-Rad™, USA).
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    23. 23. Rodems, S. M., S. S. Pullen, and P. D. Friesen. DNA-dependent transregulation by IE1 of Autographa californica nuclear polyhedrosis virus: IE1 domains required for transactivation and DNA binding. J. Virol. 1997, 71: 9270-9277.
    24. 24. Lin X, Chen Y, Yi Y, Zhang Z: Baculovirus immediately early 1, a mediator for homologous regions enhancer function in trans. Virol J 2010, 7:32.
    25. 25. Okano K, Mikhailov VS, Maeda S: Colocalization of baculovirus IE-1 and two DNA-binding proteins, DBP and LEF-3, to viral replication factories. Journal of virology 1999, 73(1):110-119.
    SEQUENCE LISTING
    • <110> ALTERNATIVE GENE EXPRESSION S.L.
    • <120> RECOMBINANT DNA ELEMENTS FOR THE EXPRESSION OF RECOMBINANT PROTEINS IN INSECTS
    • <130> 156 594
    • <150> EP11169634.0
      <151> 2011-06-10
    • <150> PCT/EP2011/068381
      <151> 2011-10-20
    • <150> PCT/EP2011/072406
      <151> 2011-12-12
    • <160> 29
    • <170> PatentIn version 3.5
    • <210> 1
      <211> 1911
      <212> DNA
      <213> Autographa californica nucleopolyhedrovirus
    • <400> 1
      Figure imgb0001
      Figure imgb0002
    • <210> 2
      <211> 1749
      <212> DNA
      <213> Autographa californica nucleopolyhedrovirus
    • <400> 2
      Figure imgb0003
      Figure imgb0004
    • <210> 3
      <211> 1911
      <212> DNA
      <213> Autographa californica nucleopolyhedrovirus
    • <400> 3
      Figure imgb0005
      Figure imgb0006
    • <210> 4
      <211> 666
      <212> DNA
      <213> Autographa californica nucleopolyhedrovirus
    • <400> 4
      Figure imgb0007
      Figure imgb0008
    • <210> 5
      <211> 828
      <212> DNA
      <213> Autographa californica nucleopolyhedrovirus
    • <400> 5
      Figure imgb0009
    • <210> 6
      <211> 582
      <212> PRT
      <213> Autographa californica nucleopolyhedrovirus
    • <400> 6
      Figure imgb0010
      Figure imgb0011
      Figure imgb0012
      Figure imgb0013
    • <210> 7
      <211> 636
      <212> PRT
      <213> Autographa californica nucleopolyhedrovirus
    • <400> 7
      Figure imgb0014
      Figure imgb0015
      Figure imgb0016
    • <210> 8
      <211> 222
      <212> PRT
      <213> Autographa californica nucleopolyhedrovirus
    • <400> 8
      Figure imgb0017
      Figure imgb0018
    • <210> 9
      <211> 276
      <212> PRT
      <213> Autographa californica nucleopolyhedrovirus
    • <400> 9
      Figure imgb0019
      Figure imgb0020
      Figure imgb0021
    • <210> 10
      <211> 128
      <212> DNA
      <213> Autographa californica nucleopolyhedrovirus
    • <400> 10
      Figure imgb0022
    • <210> 11
      <211> 122
      <212> DNA
      <213> Autographa californica nucleopolyhedrovirus
    • <400> 11
      Figure imgb0023
    • <210> 12
      <211> 571
      <212> DNA
      <213> Artificial Sequence
    • <220>
      <223> Recombinant chimeric promoter
    • <400> 12
      Figure imgb0024
    • <210> 13
      <211> 465
      <212> DNA
      <213> Artificial Sequence
    • <220>
      <223> Recombinant chimeric promoter
    • <400> 13
      Figure imgb0025
    • <210> 14
      <211> 436
      <212> DNA
      <213> Autographa californica nucleopolyhedrovirus
    • <400> 14
      Figure imgb0026
    • <210> 15
      <211> 1176
      <212> DNA
      <213> Artificial Sequence
    • <220>
      <223> Recombinant chimeric promoter
    • <400> 15
      Figure imgb0027
      Figure imgb0028
    • <210> 16
      <211> 250
      <212> DNA
      <213> Artificial Sequence
    • <220>
      <223> Recombinant chimeric promoter
    • <400> 16
      Figure imgb0029
    • <210> 17
      <211> 3163
      <212> DNA
      <213> Artificial Sequence
    • <220>
      <223> Recombinant expression cassette
    • <400> 17
      Figure imgb0030
      Figure imgb0031
    • <210> 18
      <211> 3656
      <212> DNA
      <213> Artificial Sequence
    • <220>
      <223> Recombinant expression cassette
    • <400> 18
      Figure imgb0032
      Figure imgb0033
      Figure imgb0034
    • <210> 19
      <211> 3541
      <212> DNA
      <213> Artificial Sequence
    • <220>
      <223> Recombinant expression cassette
    • <400> 19
      Figure imgb0035
      Figure imgb0036
      Figure imgb0037
    • <210> 20
      <211> 3512
      <212> DNA
      <213> Artificial Sequence
    • <220>
      <223> Recombinant expression cassette
    • <400> 20
      Figure imgb0038
      Figure imgb0039
    • <210> 21
      <211> 4005
      <212> DNA
      <213> Artificial Sequence
    • <220>
      <223> Recombinant expression cassette
    • <400> 21
      Figure imgb0040
      Figure imgb0041
      Figure imgb0042
    • <210> 22
      <211> 3898
      <212> DNA
      <213> Artificial Sequence
    • <220>
      <223> Recombinant expression cassette
    • <400> 22
      Figure imgb0043
      Figure imgb0044
      Figure imgb0045
    • <210> 23
      <211> 3179
      <212> DNA
      <213> Artificial Sequence
    • <220>
      <223> Recombinant expression cassette
    • <400> 23
      Figure imgb0046
      Figure imgb0047
      Figure imgb0048
    • <210> 24
      <211> 3528
      <212> DNA
      <213> Artificial Sequence
    • <220>
      <223> Recombinant expression cassette
    • <400> 24
      Figure imgb0049
      Figure imgb0050
      Figure imgb0051
    • <210> 25
      <211> 3291
      <212> DNA
      <213> Artificial Sequence
    • <220>
      <223> Recombinant expression cassette
    • <400> 25
      Figure imgb0052
      Figure imgb0053
      Figure imgb0054
    • <210> 26
      <211> 3640
      <212> DNA
      <213> Artificial Sequence
    • <220>
      <223> Recombinant expression cassette
    • <400> 26
      Figure imgb0055
      Figure imgb0056
      Figure imgb0057
    • <210> 27
      <211> 881
      <212> DNA
      <213> Autographa californica nucleopolyhedrovirus
    • <400> 27
      Figure imgb0058
    • <210> 28
      <211> 2124
      <212> DNA
      <213> Artificial Sequence
    • <220>
      <223> Recombinant DNA construct fusing the Ac-ie-01 cDNA to the polh promoter
    • <400> 28
      Figure imgb0059
      Figure imgb0060
    • <210> 29
      <211> 911
      <212> DNA
      <213> Artificial Sequence
    • <220>
      <223> Recombinant DNA construct fusing the GFP cDNA to the polh promoter
    • <400> 29
      Figure imgb0061

Claims (8)

  1. Insect derived from the genus Lepidoptera, comprising nucleic acid elements introduced into the insect by a recombinant baculovirus containing an endogenous Ac-ie-01 gene, wherein said nucleic acid elements comprise
    [1] a further copy of baculoviral Ac-ie-01 cDNA as transgene under the control of a suitable promoter that allows for the expression of the proteins IE-1, IE-0 and/or fragments thereof functioning as transcriptional regulators above endogenous levels obtained during baculovirus infection, wherein the nucleic acid is selected from the group consisting of:
    (a) a nucleic acid containing the nucleotide sequence indicated in any of SEQ ID NO: 1-5;
    (b) a nucleic acid sequence having a sequence identity of at least 70%, preferably at least 75%, more preferably at least 80%, more preferably at least 85%, more preferably at least 90% and most preferably at least 95% with the nucleotide sequence indicated in any of SEQ ID NO: 1-5 and encoding a protein able to function as a transcriptional regulator in a recombinant baculovirus;
    (c) a nucleic acid sequence encoding an amino acid containing the amino acid sequence indicated in any of SEQ ID NO: 6-9; and
    (d) a nucleic acid sequence encoding an amino acid sequence having a sequence similarity of at least 70%, preferably at least 75%, more preferably at least 80%, more preferably at least 85%, more preferably at least 90% and most preferably at least 95% with the amino acid sequence indicated in any of SEQ ID NO: 6-9 and able to function as a transcriptional regulator in a recombinant baculovirus;
    [2] wherein the insect further comprises at least one recombinant homologous region (hr) as enhancer region, operably linked to any promoter that is suitable for driving the expression of a recombinant protein,
    [3] wherein the promoter that drives the expression of said recombinant protein is selected from the group of nucleic acids comprising:
    i. a nucleic acid containing the nucleotide sequence indicated in any of SEQ ID NO: 10-16; and
    ii. a nucleic acid sequence able to function as a promoter in a recombinant baculovirus and having a sequence identity of at least 70%, preferably at least 75%, more preferably at least 80%, more preferably at least 85%, more preferably at least 90% and most preferably at least 95% with the nucleotide sequence indicated in any of SEQ ID NO: 10-16.
  2. Insect according to claim 1, wherein the recombinant homologous region (hr) is the sequence indicated in SEQ ID NO: 27 (hr1).
  3. Insect according to any of the claims 1-2, wherein the nucleic acid sequence that comprises combinations of recombinant promoters, sequences encoding transcriptional regulators and enhancer regions are selected from the group comprising SEQ ID NO: 17-26.
  4. Insect according to any of the claims 1-43, wherein the insect is selected from the group consisting of Trichoplusia ni, Spodoptera frugiperda, Spodoptera exigua, Ascalapha odorata, Bombyx mori, Rachiplusia ni and Estigmene acrea.
  5. Insect according to any of the claims 1-4, wherein the nucleic acid sequence(s) is introduced into the insect by a recombinant baculovirus selected from AcMNPV or BmNPV.
  6. Insect according to any of the claims 1-5, further comprising a nucleic acid sequence encoding a recombinant protein, wherein said nucleic acid sequence is operably linked to a nucleic acid sequence selected from the group consisting of the nucleic acid sequences of claims 1-3.
  7. Method for producing a recombinant protein that comprises the use of an insect of claim 6 and the extraction and purification of the recombinant protein by conventional means.
  8. Method for producing a recombinant protein according to claim 7, wherein the recombinant protein is selected from the group comprising subunit monomeric vaccine, subunit multimeric vaccine, virus like particle, therapeutic protein, antibody, enzyme, cytokine, blood clotting factor, anticoagulant, receptor, hormone or diagnostic protein reagent.
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US9701983B2 (en) 2012-06-12 2017-07-11 Alternative Gene Expression S.L. Baculoviral DNA elements for the expression of recombinant proteins in a host insect
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