EP2798553A4 - Apparatus and method for managing genetic information - Google Patents

Apparatus and method for managing genetic information

Info

Publication number
EP2798553A4
EP2798553A4 EP12861498.9A EP12861498A EP2798553A4 EP 2798553 A4 EP2798553 A4 EP 2798553A4 EP 12861498 A EP12861498 A EP 12861498A EP 2798553 A4 EP2798553 A4 EP 2798553A4
Authority
EP
European Patent Office
Prior art keywords
genetic information
managing genetic
managing
information
genetic
Prior art date
Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
Granted
Application number
EP12861498.9A
Other languages
German (de)
French (fr)
Other versions
EP2798553A1 (en
EP2798553B1 (en
Inventor
Hedoo Chung
Jeong-Sun Seo
Hwanseok Rhee
Current Assignee (The listed assignees may be inaccurate. Google has not performed a legal analysis and makes no representation or warranty as to the accuracy of the list.)
SNU R&DB Foundation
Macrogen Inc
Original Assignee
SNU R&DB Foundation
Macrogen Inc
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Application filed by SNU R&DB Foundation, Macrogen Inc filed Critical SNU R&DB Foundation
Publication of EP2798553A1 publication Critical patent/EP2798553A1/en
Publication of EP2798553A4 publication Critical patent/EP2798553A4/en
Application granted granted Critical
Publication of EP2798553B1 publication Critical patent/EP2798553B1/en
Active legal-status Critical Current
Anticipated expiration legal-status Critical

Links

Classifications

    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B50/00—ICT programming tools or database systems specially adapted for bioinformatics
    • G16B50/30—Data warehousing; Computing architectures
    • G—PHYSICS
    • G06—COMPUTING; CALCULATING OR COUNTING
    • G06F—ELECTRIC DIGITAL DATA PROCESSING
    • G06F16/00—Information retrieval; Database structures therefor; File system structures therefor
    • G06F16/90—Details of database functions independent of the retrieved data types
    • G06F16/903—Querying
    • G06F16/90335—Query processing
    • G06F16/90344—Query processing by using string matching techniques
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • G—PHYSICS
    • G06—COMPUTING; CALCULATING OR COUNTING
    • G06F—ELECTRIC DIGITAL DATA PROCESSING
    • G06F16/00—Information retrieval; Database structures therefor; File system structures therefor
    • G—PHYSICS
    • G06—COMPUTING; CALCULATING OR COUNTING
    • G06F—ELECTRIC DIGITAL DATA PROCESSING
    • G06F17/00—Digital computing or data processing equipment or methods, specially adapted for specific functions
    • G06F17/40—Data acquisition and logging
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B30/00—ICT specially adapted for sequence analysis involving nucleotides or amino acids
    • G16B30/20—Sequence assembly
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B50/00—ICT programming tools or database systems specially adapted for bioinformatics
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B50/00—ICT programming tools or database systems specially adapted for bioinformatics
    • G16B50/40—Encryption of genetic data
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B30/00—ICT specially adapted for sequence analysis involving nucleotides or amino acids
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16H—HEALTHCARE INFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR THE HANDLING OR PROCESSING OF MEDICAL OR HEALTHCARE DATA
    • G16H10/00—ICT specially adapted for the handling or processing of patient-related medical or healthcare data
    • G16H10/60—ICT specially adapted for the handling or processing of patient-related medical or healthcare data for patient-specific data, e.g. for electronic patient records

Landscapes

  • Engineering & Computer Science (AREA)
  • Physics & Mathematics (AREA)
  • Theoretical Computer Science (AREA)
  • Life Sciences & Earth Sciences (AREA)
  • Health & Medical Sciences (AREA)
  • Databases & Information Systems (AREA)
  • General Health & Medical Sciences (AREA)
  • Biophysics (AREA)
  • Bioinformatics & Cheminformatics (AREA)
  • Biotechnology (AREA)
  • Medical Informatics (AREA)
  • Evolutionary Biology (AREA)
  • Spectroscopy & Molecular Physics (AREA)
  • Bioinformatics & Computational Biology (AREA)
  • General Engineering & Computer Science (AREA)
  • Chemical & Material Sciences (AREA)
  • Bioethics (AREA)
  • General Physics & Mathematics (AREA)
  • Proteomics, Peptides & Aminoacids (AREA)
  • Data Mining & Analysis (AREA)
  • Analytical Chemistry (AREA)
  • Computational Linguistics (AREA)
  • Organic Chemistry (AREA)
  • Wood Science & Technology (AREA)
  • Genetics & Genomics (AREA)
  • Zoology (AREA)
  • Immunology (AREA)
  • Molecular Biology (AREA)
  • Biochemistry (AREA)
  • Microbiology (AREA)
  • Computer Hardware Design (AREA)
  • Mathematical Physics (AREA)
  • Software Systems (AREA)
  • Information Retrieval, Db Structures And Fs Structures Therefor (AREA)
  • Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
  • Apparatus Associated With Microorganisms And Enzymes (AREA)
  • Storage Device Security (AREA)
EP12861498.9A 2011-12-27 2012-12-26 Apparatus and method for managing genetic information Active EP2798553B1 (en)

Applications Claiming Priority (2)

Application Number Priority Date Filing Date Title
KR1020110143958A KR101300475B1 (en) 2011-12-27 2011-12-27 Apparatus and method for managing genetic information
PCT/KR2012/011477 WO2013100572A1 (en) 2011-12-27 2012-12-26 Apparatus and method for managing genetic information

Publications (3)

Publication Number Publication Date
EP2798553A1 EP2798553A1 (en) 2014-11-05
EP2798553A4 true EP2798553A4 (en) 2015-08-19
EP2798553B1 EP2798553B1 (en) 2022-02-09

Family

ID=48697931

Family Applications (1)

Application Number Title Priority Date Filing Date
EP12861498.9A Active EP2798553B1 (en) 2011-12-27 2012-12-26 Apparatus and method for managing genetic information

Country Status (6)

Country Link
US (1) US20140372046A1 (en)
EP (1) EP2798553B1 (en)
JP (1) JP2015503911A (en)
KR (1) KR101300475B1 (en)
CN (1) CN104025101A (en)
WO (1) WO2013100572A1 (en)

Families Citing this family (5)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
KR101788673B1 (en) 2014-06-24 2017-11-15 싸이퍼롬, 인코퍼레이티드 Method for protecting nucleic acid sequence data security and computer readable storage medium storing the method
WO2015199440A1 (en) * 2014-06-24 2015-12-30 서울대학교산학협력단 Nucleic acid sequence security method, device, and recording medium having same saved therein
KR102113186B1 (en) 2018-02-08 2020-05-20 신상철 Method and apparatus for managing gene information
CN112242978B (en) * 2019-07-18 2023-04-07 京东科技控股股份有限公司 Method and device for processing data
CN117852521B (en) * 2024-03-07 2024-06-07 成都中科合迅科技有限公司 Data calculation result file comparison method, system and comparison configuration system

Citations (2)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US6397224B1 (en) * 1999-12-10 2002-05-28 Gordon W. Romney Anonymously linking a plurality of data records
US20050043964A1 (en) * 2001-10-11 2005-02-24 Christian Thielscher Data processing system for patent data

Family Cites Families (11)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
JP2002024416A (en) * 2000-07-04 2002-01-25 Sony Corp System and method for managing dna information
US20030055824A1 (en) * 2001-09-19 2003-03-20 Andrea Califano Distributed personalized genetic safe
JP2003167814A (en) * 2001-11-30 2003-06-13 Csnets Inc:Kk Data processing system and method
JP3880417B2 (en) 2002-02-18 2007-02-14 セレスター・レキシコ・サイエンシズ株式会社 GENE EXPRESSION INFORMATION MANAGEMENT DEVICE, GENE EXPRESSION INFORMATION MANAGEMENT METHOD, PROGRAM, AND RECORDING MEDIUM
KR100650203B1 (en) * 2002-12-11 2006-11-27 주식회사 씨티앤디 Apparatus and method for performing genome sequence analysis and data management
JP2004246642A (en) * 2003-02-14 2004-09-02 Nissho Electronics Kk Storage and retrieval method and system for electronic document file
JP4633446B2 (en) * 2004-11-16 2011-02-16 大日本印刷株式会社 Data storage mediation system
KR101138864B1 (en) * 2005-03-08 2012-05-14 삼성전자주식회사 Method for designing primer and probe set, primer and probe set designed by the method, kit comprising the set, computer readable medium recorded thereon a program to execute the method, and method for identifying target sequence using the set
JP4916713B2 (en) 2005-12-21 2012-04-18 株式会社エヌ・ティ・ティ・データ Genetic information management system
JP2010204838A (en) * 2009-03-02 2010-09-16 Toppan Printing Co Ltd Analysis device system, analysis system, and analysis method
KR101035959B1 (en) 2010-11-18 2011-05-23 (주)신테카바이오 Method and system for integrated biomedical information retrieval based on cluster and backbone database

Patent Citations (2)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US6397224B1 (en) * 1999-12-10 2002-05-28 Gordon W. Romney Anonymously linking a plurality of data records
US20050043964A1 (en) * 2001-10-11 2005-02-24 Christian Thielscher Data processing system for patent data

Non-Patent Citations (2)

* Cited by examiner, † Cited by third party
Title
"Data storage and DNA banking for biomedical research: technical, social and ethical issues", EUROPEAN JOURNAL OF HUMAN GENETICS, vol. 11, no. 12, 22 October 2003 (2003-10-22), pages 906 - 908, XP055200875, ISSN: 1018-4813, DOI: 10.1038/sj.ejhg.5201107 *
BARTHA MARIA KNOPPERS ET AL: "The Babel of genetic data terminology", NATURE BIOTECHNOLOGY, 8 August 2005 (2005-08-08), pages 925 - 927, XP055200880, Retrieved from the Internet <URL:http://www.nature.com/nbt/journal/v23/n8/pdf/nbt0805-925.pdf> [retrieved on 20150708] *

Also Published As

Publication number Publication date
WO2013100572A1 (en) 2013-07-04
JP2015503911A (en) 2015-02-05
CN104025101A (en) 2014-09-03
EP2798553A1 (en) 2014-11-05
KR101300475B1 (en) 2013-09-02
EP2798553B1 (en) 2022-02-09
KR20130075559A (en) 2013-07-05
US20140372046A1 (en) 2014-12-18

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