EP2669011B1 - Image projection method and device for supporting manual MALDI sample preparation - Google Patents
Image projection method and device for supporting manual MALDI sample preparation Download PDFInfo
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- EP2669011B1 EP2669011B1 EP12170042.1A EP12170042A EP2669011B1 EP 2669011 B1 EP2669011 B1 EP 2669011B1 EP 12170042 A EP12170042 A EP 12170042A EP 2669011 B1 EP2669011 B1 EP 2669011B1
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Classifications
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- B—PERFORMING OPERATIONS; TRANSPORTING
- B01—PHYSICAL OR CHEMICAL PROCESSES OR APPARATUS IN GENERAL
- B01L—CHEMICAL OR PHYSICAL LABORATORY APPARATUS FOR GENERAL USE
- B01L9/00—Supporting devices; Holding devices
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- B—PERFORMING OPERATIONS; TRANSPORTING
- B01—PHYSICAL OR CHEMICAL PROCESSES OR APPARATUS IN GENERAL
- B01L—CHEMICAL OR PHYSICAL LABORATORY APPARATUS FOR GENERAL USE
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- B01L9/52—Supports specially adapted for flat sample carriers, e.g. for plates, slides, chips
- B01L9/523—Supports specially adapted for flat sample carriers, e.g. for plates, slides, chips for multisample carriers, e.g. used for microtitration plates
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- B—PERFORMING OPERATIONS; TRANSPORTING
- B01—PHYSICAL OR CHEMICAL PROCESSES OR APPARATUS IN GENERAL
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- H—ELECTRICITY
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- H01J—ELECTRIC DISCHARGE TUBES OR DISCHARGE LAMPS
- H01J49/00—Particle spectrometers or separator tubes
- H01J49/02—Details
- H01J49/04—Arrangements for introducing or extracting samples to be analysed, e.g. vacuum locks; Arrangements for external adjustment of electron- or ion-optical components
- H01J49/0409—Sample holders or containers
- H01J49/0418—Sample holders or containers for laser desorption, e.g. matrix-assisted laser desorption/ionisation [MALDI] plates or surface enhanced laser desorption/ionisation [SELDI] plates
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- B—PERFORMING OPERATIONS; TRANSPORTING
- B01—PHYSICAL OR CHEMICAL PROCESSES OR APPARATUS IN GENERAL
- B01L—CHEMICAL OR PHYSICAL LABORATORY APPARATUS FOR GENERAL USE
- B01L2200/00—Solutions for specific problems relating to chemical or physical laboratory apparatus
- B01L2200/06—Fluid handling related problems
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- B—PERFORMING OPERATIONS; TRANSPORTING
- B01—PHYSICAL OR CHEMICAL PROCESSES OR APPARATUS IN GENERAL
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- B01L2300/08—Geometry, shape and general structure
- B01L2300/0809—Geometry, shape and general structure rectangular shaped
- B01L2300/0829—Multi-well plates; Microtitration plates
Definitions
- the invention relates to a method for supporting the manual preparation of samples on a sample carrier for ionization with matrix-assisted laser desorption and a corresponding assignment aid.
- Occupancy aids have become known in the prior art, in particular for use with microtitration plates.
- the utility model DE 20 2007 018 535 U1 describes a pipetting aid for transparent microtitration plates, which are stored via an adapter in a base plate.
- the base plate includes light sources each associated with an opening in the adapter and a cavity of the transparent microtitration plate.
- a switching or control unit activates the light sources independently of each other and indicates by means of illumination through the adapter and the transparent plate, where a sample liquid is to be pipetted.
- the utility model DE 20 2005 017 946 U1 concerns a similar subject.
- sample carriers for ionization with matrix-assisted laser desorption are usually opaque. This is due to their electrical conductivity, which serves to prevent static charges on the sample carrier, which can form during the laser desorption. Electrical conductivity is fundamentally undesirable for microtitration plates, because the cavities-in contrast to the flat sample samples with a largely aligned design on MALDI sample carriers-have a larger interaction surface with the filled sample liquid. This increased interaction area can - with existing conductivity and liquid samples - unwanted interfacial processes, such as the deposition of dissolved in the liquid charge carriers such as salts, or require chemical interface reactions.
- the patent US 4,692,609 A describes, in a manner similar to the above utility model, a receptacle for a transparent microtitration plate, at the bottom of which a plurality of light sources are arranged so that they can illuminate a well of the plate from below to indicate to a user where to pipet.
- the lighting can also be done on the front by a feasible light source, it is not disclosed how a feasible light source should be designed.
- the publication WO 2007/038521 A1 shows a construction with telescopic arm, at the end of a light source is mounted.
- the arm can be extended by means of an actuator so that the light source can be positioned vertically over each cup of the microtitration plate for the purpose of illumination.
- This embodiment has the disadvantage that when starting a particular cup always the light source itself must be moved together with the holder, which places increased demands on the mechatronic actuators.
- the publication EP 1 763 061 A2 concerns, among other things, the monitoring of occupancy processes on MALDI sample carriers by means of an imaging workstation.
- the publication DE 10 2004 020 885 A1 is concerned with the preparation of samples of microbial origin on MALDI slides with the aim of automating the transfer of biological material from agar plates to sample locations of MALDI slides.
- agar plates are transported via a conveyor belt to a robot and placed on a 3D table.
- Image processing recognizes single colonies on the agar plate and positions a sample rod accordingly.
- a single sample rod is used only for a single transmission and then replaced.
- the uptake of biological material with the sample rod is accomplished by detaching the sample rod from a support and dropping it from a height of a few millimeters onto the colony.
- the contact with the colony thus produced is intended to guarantee that only biological material will adhere to the sample rod, but no agar will be transferred to the MALDI sample carrier. If too much agar is transferred to the MALDI sample carrier, the quality of the mass spectrometric identification is reduced because agar suppresses the signals of the characteristic protein ions. A fine sensor to control the contact is not provided. However, the sample rod vibrates and can be wetted with water before sampling, so that a sufficient Amount of biological material from a colony sticks to the sample rod and can be transferred to a sample site of a MALDI sample carrier.
- US2005102056 shows an image system for visual highlighting of a recording in which the process steps are automatically detected and the sample locations are automatically controlled.
- the invention proposes an allocation aid for the manual preparation of samples on a sample carrier for ionization with matrix-assisted laser desorption. It contains a holder for a sample carrier with several sample types, which is preferably adapted to standardized sample carriers for ionization with matrix-assisted laser desorption. Furthermore, a device is provided which throws a two-dimensional optical image, or a corresponding image sequence, onto the front side of the sample carrier having the sample location when the sample carrier is arranged in the receptacle, the image or the image sequence being designed such that highlighting a selected sample location, or group of selected sample locations, at least opposite non-selected sample locations adjacent thereto in a human visual manner. Furthermore, an interface for confirming the occupancy by hand or a device for the automated detection of a manual occupancy process are available. With a control system, a sample location, or a group of sample locations, can be selected and the device can be controlled accordingly.
- two-dimensional image is to be understood in the context of the present disclosure. For example, it is possible to project two two-dimensional images one after the other onto the sample carrier in rapid succession, so that a viewer, possibly using an aid such as a pair of glasses, creates a three-dimensional image impression on the sample carrier front side.
- a component of such a "3D" image could also be a two-dimensional map.
- the device preferably has a surface light modulator, a liquid crystal projector, or a liquid crystal on silicon projector.
- a very flexible image, or a very varied image sequence can be generated on the sample carrier using conventional video projection methods.
- the front of the sample carrier thus acts as a "canvas" of the projected image.
- the design of the image with respect to color choice of individual pixels (pixels), brightness and / or image sequence are virtually unlimited.
- Such a surface light modulator essentially consists of micromirror actuators arranged in the form of a matrix, that is to say tiltable reflecting surfaces of small edge length, which can be housed in very large numbers in a small space such as a microchip.
- the movement of the actuators is caused by the force of electrostatic fields.
- Each micromirror can be individually adjusted in its angle and usually has two stable end states, between which it can switch at a frequency of several kilohertz. By means of the switching frequency, the brightness of a picture element can be adjusted.
- the number of mirrors corresponds to the resolution of the projected image, wherein a mirror can represent one or more picture elements. Meanwhile, resolutions of up to 4160 by 2080 pixels are possible. In addition, very high-contrast images can be generated in a small area.
- a color wheel can be switched in the light path in front of the area light modulator, on which color filters of the primary colors rotate (usually red, green and blue, partially but also more).
- color filters of the primary colors usually red, green and blue, partially but also more.
- the color wheel can also be added to a white sector.
- the electronics changes the part of the image, the Modulator is reflected. Due to the rotational speed of the color wheel and the inertia of the human eye, the partial images are added to a colored image impression. High rotational speeds of the color wheel or the provision of multiple color segments ensure a smooth, seamless color representation in the projection.
- the color representation can be achieved by decomposing the white projection lamp light by means of dichroic mirrors into the three primary colors red, green and blue and their individual transmission to three different modulators. The respective partial reflection can then be added back to the complete color image in a dichroic prism which contains two crossed dichroic mirrors. Additional micromirror sets are required for this variant.
- the color dispersion may also be caused by a dichroic prism.
- the device may generate an image or image sequence, thereby producing a brightness and / or color contrast at least to adjacent non-selected sample locations at the selected sample location, or group of sample locations.
- the device prefferably to generate an image sequence that highlights a sample location or a group of sample locations in an eye-catching manner, for example by the image having a signal color (such as red, yellow or even green) at the location of the sample location to be highlighted whereas the other parts of the image or sequence of images contain muted colors (such as gray or brown) that usually recede behind the signal colors. Flickering or blinking effects can also be achieved with image sequences if, for example, a series of projected images has varying intensity and / or color ranges.
- a signal color such as red, yellow or even green
- the inclusion of the assignment aid is adapted, preferably geometrically, to standardized sample carriers for ionization with matrix-assisted laser desorption. This adjustment can also be done with adapters that are used in a recording. In this way, sample carriers of different configurations or dimensions can be fitted in the receptacle. As a result, a flush and / or aligned arrangement of the sample carriers in the receptacle can be achieved.
- the standardization of the sample carriers is determined in particular by their geometric dimensions such as height, length, width or area, the Number of sample locations and / or their shape and / or their size or their (matrix) arrangement, in particular in rows and columns.
- sample carriers which are used in time-of-flight mass spectrometers with axial ion injection and laser desorption, must be designed with as flat a front as possible, so that the simplest possible conditions exist for spanned in the space in front of the sample carrier front electrical fields. This facilitates the control of the area in phase space (spanned by place and momentum coordinates) occupied by the ions of interest arising during laser desorption. Cavities as incorporated in microtitration plates are not suitable for this purpose.
- the operation of the device may include generating brightness and / or color contrast at least at adjacent non-selected sample locations at the selected sample location.
- a selected sample location can be irradiated with intense yellow or red light, while the rest of the optical image has a rather low intensity gray tone.
- the control system as part of the assignment aid can be provided with an interface for data input or data output. This is particularly useful when a user wants to enter or read in an occupancy plan of a sample carrier to be processed in the control system.
- the interface can also be used, for example, by manual input for confirmation of an assignment process made. In this way, a sequence of occupancy processes can be carried out reliably.
- the interface may also have a remote communication function, for example for receiving sample origin data and / or corresponding identification mark, which can then be stored with the occupancy data and / or corresponding identification mark the occupied sample locations for the purpose of assignment.
- the remote communication function may also include transmitting corresponding data.
- the remote communication function can be set up with known remote communication means such as a radio, Bluetooth, infrared or other interface.
- the control system may further comprise a memory for the allocation and recording of identification marks of samples and sample locations. There, the assignments made are safe and can be retrieved as often as desired for later evaluation or review.
- the allocation aid can be stationary in one embodiment. Then it is preferably in an arrangement of a breeding plate support on which, for example, Petri dishes arrange for sampling, and arranged a sample loading station for a mass spectrometer with a laser desorption so that the most time-saving transfer of samples from a rearing plate in the rearing plate support on a sample carrier in the assignment aid and from there to the loading station is possible.
- a breeding plate support on which, for example, Petri dishes arrange for sampling, and arranged a sample loading station for a mass spectrometer with a laser desorption
- the assignment aid can also be designed to be portable.
- the assignment aid can be worn by a user such as a painter's palette on or on the hand.
- the placement aid preferably has a holding device such as a handle, adapted to the fingers of a human hand blind holes, or a tether, with which it is festschnallbar on an arm of a user.
- the portability can also be achieved in that the placement aid designed in the manner of a belly shop, so for example provided with at least one shoulder or neck strap, so that it can be worn by a user in front of the abdomen or chest.
- This variant has the advantage that the user has both hands free. Due to the portability, the handling of the assignment aid is more flexible, in particular is no longer locally limited.
- a docking station can be provided, which is preferably stationary and has a receptacle for the assignment assistance.
- a user can, if he needs the necessary freedom, dedicate the worn on the body or in the hand portable assignment aid in the recording and to other work in which the assignment aid is not required to devote.
- the assignment aid can transfer data of an executed assignment sequence to a stationary computer located in the station. It would also be possible and useful to make an electrical connection to recharge any accumulators of the occupancy aid that provide the energy for their operation.
- an automated detection device preferably comprises a scattered light sensor.
- the scattered-light sensor is preferably arranged above the receptacle and serves, in particular, to detect changes in the scattered-light behavior which indicate a manual occupying process on the front side of a sample carrier located in the receptacle, in particular spatially resolved.
- spatially resolved detection it is also possible to search in a targeted manner for a scattered light signal from the sample location provided (and highlighted) for the next pending occupancy procedure.
- the temporal correlation or synchronization of the visual highlighting with the detection of a scattered light event an important parameter.
- the scattered light can basically originate from the optical image and / or from a separately generated light beam which is thrown onto the sample carrier (possibly onto the highlighted sample location on the sample carrier).
- a selected sample location can be illuminated individually prior to occupancy, and the scattered light emanating therefrom can be measured with an integrally measuring scattered light sensor.
- the scattered light measurement can be automatically repeated after confirmation of manual occupancy by the user or at intervals. From the differences in the scattered light intensities or their absence can be concluded that a correct or incorrect occupancy of the selected sample location.
- the scattered light measurement can be performed one at a time for each of the different sample locations of the group individually.
- the light for the illumination of the individual selected sample locations is preferably generated by the device which throws the two-dimensional optical image onto the sample carrier, but can also be generated by a corresponding second device, in particular in the infrared spectral range which is not visually discernible to the user , An image sequence can be helpful in the evaluation of the scattered light signal by means of frequency filters.
- a camera with image recognition can also be used for an automatic detection of the occupancy.
- changes in the scattered light behavior can be detected very reliably. If the sensor is aligned with a sample location to be occupied, the occupation process initially expects a strongly varying scattered light signal if the user moves his pipette or his vaccum stamp, for example, through the light cone of the two-dimensional optical image or the light beam of the separate light source. If the vaccination stamp is withdrawn, the changes in the scattered light behavior at the freshly occupied sample location result from the deposited sample (or not at all if the assignment was unsuccessful or took place in the wrong place).
- an incorrect occupancy may also be detected if, in fact, a scattered light change appears at a sample location other than that intended for the next occupancy. It is also possible to confirm an occupancy by hand via changes in the scattered light behavior of a part of the surface of the sample carrier. So can on the Front of the sample carrier, alternatively also in the edge area of the receptacle, a certain area for the occupancy confirmation must be designated, in which no sample locations are and which is monitored with the scattered light sensor. After occupancy, the user can travel with the vaccination stamp over the designated area and thus generate a temporary flare change signal that causes a connected processor to proceed to the next sample location of an occupancy sequence.
- border area is to be understood broadly and is not only intended to describe areas of the image itself, but may also include (mostly marginal) areas of the sample carrier.
- the image, or image sequence may be divided into an area highlighting the selected sample location, or the selected sample locations, and an area displaying information to the user.
- the display area may include, for example, a text display with information about the sample to be applied.
- the invention further discloses a method for assisting the manual preparation of samples on a planar sample support for matrix-assisted laser desorption ionization.
- a sample carrier with multiple sample locations is provided.
- a selection criterion is defined, or several selection criteria are defined according to which or after which an assignment sequence is to take place.
- a set of sample locations is selected.
- a two-dimensional optical image, or sequence thereof is thrown onto the front surface of the planar sample support having the sample locations, the image, or image sequence, being arranged such that a selected sample location, or a group of selected sample locations, at least towards adjacent non-selected sample locations in a manner visually perceptible to a human.
- a sample or substance for preparing a sample e.g., a solution containing a MALDI substance
- a sample or substance for preparing a sample is manually deposited on the highlighted sample site.
- the occupancy is confirmed by hand and / or automatically detected by a sensorium. If the set contains further unprocessed sample locations, or groups of sample locations, the highlighting and manual picking steps may be repeated with the next sample location of the set, or the next group of sample locations. Otherwise, the assignment sequence would be temporarily terminated.
- a user who wishes to carry out a manual preparation of a sample carrier is assisted by the visualization that is visually recognizable by means of the image or the image sequence therein, which is a nutrient medium - for example agar plate, bouillon or blood culture - to deposit the sample taken or processed from it at the right place.
- the risk of occupancy errors which is essentially due to the fact that, as a rule, the transferred sample material is barely perceptible visually due to its small amount, can be reduced in this way.
- the emphasis should in particular be reversible, that is activatable and deactivatable, and can be reversed again, for example by selectively switching the projected image on or off (or even changed).
- the work of a specialist should also be facilitated in particular by the fact that the selection and highlighting are done (semi-) automatically with electronically supported means.
- Low process cost can be achieved if the highlighting of the selected sample location is limited to the immediately adjacent non-selected sample locations, for example by occupying the sample site to be highlighted with a region of the image of light color or high light intensity, whereas those immediately adjacent are not highlighted Sample locations are covered by a region of the image with dark color or low light intensity.
- the highlighting effect can be enhanced by increasing the amount of non-selected sample locations, in the extreme case such that the selected sample location is emphasized over all other non-selected sample locations.
- the image or sequence of images is essentially thrown on the entire front side of the sample carrier.
- MALDI is given as the preferred type of ionization in which ions are formed during laser-induced desorption.
- the type of ionization can be freely selected depending on the application.
- the laser desorption can be carried out, for example, with a chemical ionization ( laser desorption chemical ionization - LDCI). But also other types of ionization can be used.
- the term ionization with matrix-assisted laser desorption is correspondingly broad.
- the sample location can then be selected to be unoccupied.
- the method offers some flexibility in different stages of an occupancy sequence. It is also possible to make a geometric range setting, for example in the way that only every nth - for example, every second - sample location must be documented. This can be useful if the risk of cross contamination by outgassing of a sample and transition of the outgassed sample particles in the gas phase to another sample location with a small spatial distance the occupied sample is increased.
- the selection can be made by an electronic-based technical control system, for example by all unoccupied sample locations are occupied, alternatively by a user of the method.
- sample locations may be selected and the highlighting performed repeatedly in an assignment process, with each repeat highlighting a different selected sample location, or a different group of selected sample locations.
- the method is therefore particularly suitable for sequential processing of various samples, which originate from different colonies on a rearing plate and are to be placed on a sample carrier.
- a monitoring and control system that supports the user of the method in the selection of the samples to be transmitted.
- a process is also proposed for manually preparing a sample on a sample carrier for matrix-assisted laser desorption ionization in which the sample and the sample locations are each provided with identification marks in which a sample location is selected and highlighted according to a method described above, the sample is applied to the selected sample location and the tags are associated and stored.
- the sample carrier and check which samples were transferred from which source to a specific sample location.
- This allows for subsequent process control and may, for example, indicate an error if a sample of specific origin has been deposited on two sample locations, although only one sample location was provided for each sample of the corresponding origin.
- the assignment and storage can be carried out jointly or separately in a combined method step.
- the assignment can be carried out, for example, before the actual allocation process, the storage after the completion of the allocation process.
- a certain chronological sequence of the assignment and storage during the procedure is basically not mandatory.
- the identifiers are assigned and stored after the allocation process, since such a misallocation or incorrect allocation can be more easily detected.
- samples especially those of microbial origin are suitable.
- it is understood to mean the microorganisms themselves in their untreated form, as grown in or on a nutrient medium.
- the identification mark of the sample can be derived from an identification of the sample vessel - for example a Petri dish - from which the sample originates. This ensures a high level of safety in sample tracking. It is likewise possible to generate or supplement an identification mark by a camera recording the sample source, in particular the planar nutrient medium in a Petri dish, and determining the coordinates of the sample source location in the recording by means of image evaluation and assigning it to the sample. In addition or as an alternative to an optical imaging of the planar nutrient medium, the sample source of origin can also be identified by measuring the change in capacitance on the two-dimensional nutrient medium before the sample is taken after the sample has been taken.
- the sample origin data and / or identification marks can be transmitted via remote communication means for sample preparation instrumentation to be stored there after occupying a sample location on a sample carrier together with the occupancy coordinates and / or identification mark of the sample carrier or sample location. In this way, a particularly detailed sample tracking is possible.
- FIG. 2a shows schematically the structure of an assignment aid 2 according to the principles of the invention.
- a base plate 4 contains a receptacle 6 whose internal dimensions preferably correspond to the standardized outer dimensions of an LDI sample carrier 8 (in particular MALDI sample holder) are adapted.
- adapters (not shown) may be used which set a required spatial configuration.
- a sample carrier 8 is arranged in the receptacle 6.
- a sensor (not shown) can be integrated, which detects the presence of a sample carrier and forwards a corresponding information signal to a control system 10, for example, a built-in microprocessor microprocessor.
- the sensor may for example consist of a simple push button, which is actuated when inserting the sample holder 8 in the receptacle 6. But there are also other, in particular non-contact sensor variants (ultrasonic proximity sensor, light barrier, ...) conceivable.
- a recording of the assignment aid can also be designed as a frame (not shown).
- a frame that fixes the sample carrier on the narrow sides has the advantage that both the front side and the rear side of the sample carrier are accessible to a measuring or examination instrument (possibly a sensorium). This facilitates the handling of the assignment aid, especially if it is portable.
- an arm or carrier 12 rises in the height at which an imaging device 14 is arranged.
- the imaging device 14 may be formed, for example, in the manner of a video projector, as will be explained in more detail below.
- the imaging device 14 is arranged and aligned so that it can throw a two-dimensional optical image 16, or a corresponding image sequence, onto the front side of a sample carrier 8 located in the receptacle 6.
- the imaging device 14 communicates with and is controlled by the guidance system 10, for example to indicate which image is to be projected to highlight a sample location, or a group of sample locations.
- the imaging device 14 preferably includes various optics that cause the image or image sequence, while being laterally thrown at a certain angle onto the sample carrier front, to be displayed undistorted.
- the imaging device 14 is arranged to allow a user to transfer a microbiological sample, for example cells of a microbial colony that had been grown on an agar plate, to a sample location on the sample carrier 8 largely unhindered with a vaccination stamp 18 or similar transfer device ,
- control system 10 has an interface (not shown) by means of which a user manually confirms a manual occupancy of a sample location can.
- the term confirming by hand is to be understood here broadly and may also include entering identification data of the next sample to be prepared, for example by scanning a barcode on an agar plate.
- control system 10 is equipped with a sensor for the automated detection of occupancy operations, and thus the completion of occupancy of a sample location is automatically detected and reported to the control system 10.
- the automated detection can also include the detection of incorrect allocations, that is, if a sample has been deposited on a different than the intended sample location.
- the sample amount may be probed or the occupancy state of the sample site may be determined by changing at least one of the following chemo-physical properties: resonant frequency of a piezoelectric material, density, geometric dimension, transit time of ultrasound or electromagnetic waves, electrical capacitance, electrical Resistance, inductance, permittivity, magnetizability, light scattering, light absorption, light reflection or luminescence.
- chemo-physical properties resonant frequency of a piezoelectric material, density, geometric dimension, transit time of ultrasound or electromagnetic waves, electrical capacitance, electrical Resistance, inductance, permittivity, magnetizability, light scattering, light absorption, light reflection or luminescence.
- the control system 10 can detect certain configuration data of the sample carrier 8 via a further telecommunication connection to the sample carrier 8, for example the number, arrangement and position of the individual sample locations.
- a microchip attached to the sample carrier 8 containing the corresponding configuration data may be read out.
- the guidance system 10 may also include, or communicate with, a camera and an optical image recognition system (not shown) that receives the front of the sample carrier 8 and locates identifiable features of the sample locations for application of sample material. These recognizable features can be designed as markings, for example annular framing, on the front side.
- the communication with the device 14 also enables the guidance system 10 in this example to (de-) activate a video projector for generating an optical image on the sample carrier front, to change the image and, if necessary, to select different image formats.
- An interface can be used to record the configuration data, the selection of an image (or a sequence of images) as well as the (de-) activation of the projector in some embodiments also be done by hand.
- a user of the assignment aid can in a semi-automatic embodiment of the control system 10 enter the occupancy state of the sample carrier 8 or read in, for example via an interface. He can simultaneously specify the criterion according to which the sample locations are to be selected. This can be, for example, a blank state.
- the control system 10 checks which of the sample locations are eligible for occupancy, selects one of them (optionally also a group) to highlight the corresponding sample location, selects the image to be projected accordingly, or generates it, and activates the video projector.
- An image or image sequence is then thrown onto the front side of the sample carrier 8, where a sample site and optionally the surrounding area of the sample carrier front side is distinguished in a human visually perceptible manner from the other areas of the sample carrier with non-selected sample locations.
- the highlighting effect may be enhanced by a visual impact enhancement design of the sample support material, for example by incorporating particles into the sample support material 8 which will produce a glitter or color effect when illuminated.
- a kind of light primer with white particles may also be useful to better accentuate color differences in the various picture elements.
- the user can apply his sample to the correct sample location, and then, for example, confirm the assignment by hand via the interface. This can then lead to the deactivation of the emphasis, in this example, the turning off of the projection, or to the change of the displayed image.
- a sensor for automatic detection of manual occupancy operations may also be used.
- the sample carrier front side may be provided with an anti-glare coating. This can prevent dazzling reflections of light that might occur during the projection of the image or the sequence of images. Basically, however, the risk of glare when using a projector for imaging on the sample carrier in contrast to bundled light rays is low.
- the control system 10 can be provided with a memory (not shown) for the allocation and recording of identification marks of samples and sample locations. This information can optionally be entered or read by a user via the interface; alternatively also by automatic data transmission.
- a scattered light sensor 19 can also be arranged on the support 12 (as in FIG Figure 2b indicated), which monitors the front side of the sample carrier 8 spatially resolved to detect changes in the scattered light behavior and to be able to spatially assign an area on the sample carrier, for example a sample location.
- the spatial resolution can be achieved, for example, with a c harge-coupled device (CCD) and corresponding upstream optics.
- CCD c harge-coupled device
- the light scattered on the surface of the sample carrier 8 and then detected may originate from the projector of the imaging device 14 or also from a separate light source (not shown).
- the scattered light sensor (19) can also measure the integral (not spatially resolved) scattered light that originates from a sample location when it is individually illuminated by the imaging device 14 or the separate light source.
- a specific area 21 (FIG. Figure 2c ) to confirm a successful occupancy process.
- the user can wipe the area 21 with the vaccination stamp and thus trigger a scattered light pulse which indicates the completion of an assignment process and thus leads to the continuation of an assignment sequence.
- This is an example of an interface for confirming an occupancy.
- the area 21 should be placed on a side of the sample carrier from which a user does not access the sample locations to avoid unnecessary false signals.
- the area may not be arranged on the sample carrier itself, but in an edge region of the receptacle.
- FIG. 3 shows in more detail an embodiment of an assignment aid 2 * according to principles of the invention.
- the highlighting device in this example has a surface light modulator disposed in a housing 20.
- the housing 20 is supported by a carrier or holder (not shown here for simplicity of illustration).
- Area light modulators are just one example of a video projection technique.
- liquid crystal projectors or liquid crystal on silicon projectors can be used. Such projectors have the advantage that they can generate a very flexible image 16, or a very varied image sequence, on the sample carrier 8. The design of the image 16 with respect to color choice of individual pixels (pixels), brightness and / or image sequence are virtually unlimited.
- a micromirror actuator 22 onto which light is projected by a suitable projection lamp 24 via an imaging optic 26A. From the micromirror 22, the image reaches the front of a sample carrier 8 via a further imaging optic 26B.
- Micromirror actuators 22 can be accommodated in very large numbers in a small space such as a microchip. Each micromirror 22 can be individually adjusted in its angle and usually has two stable end states, between which it can switch at a frequency of several kilohertz. By means of the switching frequency, the brightness of a picture element can be adjusted. The number of mirrors corresponds to the resolution of the projected image 16, wherein a mirror can represent one or more picture elements.
- a color wheel 28 is switched in this example in the light path in front of the Mikroaptaktuator 22, on the color filter of the primary colors (usually red, green and blue, but sometimes even more) are rotated.
- the color wheel 28 can also be added to a white sector.
- the electronics change the partial image, which is reflected by the modulator 22. Due to the rotational speed of the color wheel 28 and the inertia of the human eye, the partial images are added to a colored image impression. High rotational speeds of the color wheel 28 or the provision of multiple color segments ensure a smooth, seamless color representation in the projection.
- the color dispersion may also be caused by a dichroic prism.
- the color representation can be achieved by decomposition of the projection lamp light by means of dichroic mirrors in the three primary colors red, green and blue and their individual forwarding to three different modulators.
- the respective partial reflection can then be added to the complete color image, for example in a dichroic prism which contains two crossed dichroic mirrors.
- the Figure 4 shows a simple example of a projected image highlighting one sample location on a sample support over another.
- the sample carrier in this example has 9 ⁇ 9 sample locations in matrix arrangement (columns A to I and rows 1 to 9).
- the projected image in this case covers the entire area of the slide front. In some embodiments, only partial areas of the sample carrier can serve as the "canvas" of the image. In other variants, the image or image sequence extends beyond the edges of the sample carrier.
- the optical image has a high brightness and / or color contrast to the other sample locations on the sample carrier. A color contrast can be achieved, for example, with the color yellow compared to a faint gray (hatched).
- a brightness contrast would result if the intensity of white light on the selected sample location G4 is higher (ten times higher in an example) than in the surrounding areas.
- the image to be projected can be generated automatically by a control system according to the acquired configuration data of the sample carrier. Alternatively, it can also be specified by a user.
- a user can also be displayed as to whether a selected sample location with a sample or with which substance a selected sample location is to be assigned in a next method step.
- a particular color could also indicate the occupancy status of the selected sample site. For example, a bright white could represent a blank sample location, yellow for a microbial sample site, red for a digestion or extractant, and green for a matrix solution.
- the versatility of the present method has no limits in this regard.
- Figures 5A, 5B and 5C show an embodiment in which an image sequence is thrown onto a sample carrier front.
- the image sequence comprises two pairs of arrows, each arranged perpendicular to one another (each pointing in opposite directions), which point with their tips to a selected sample location D5.
- the arrows from an outermost position with each successive image of the image sequence can continue to move to the location of the sample location D5 until the arrowheads seemingly touch the outer contours of the sample location D5. It is understood that also a single image as in Figure 5C can be used without animation to highlight the sample location D5.
- a sample carrier for ionization with matrix-assisted laser desorption with multiple sample locations is provided. It can be to be a MALDI sample carrier that does not need to be transparent. It can be a flat metallic plate or a plate made of a conductive plastic or a doped semiconductor, such as silicon. Furthermore, a Petri dish is provided which contains a flat nutrient medium on which colonies of microorganisms have grown. However, pellets obtained by centrifugation or filtration can serve as sample sources.
- the Petri dish mentioned here by way of example can be provided with a barcode as identifier, which is read in, for example optically scanned, in an optional method step.
- an RFID chip as the carrier of an identification tag, which could be read out by radio.
- the arrangement of the colonies on the nutrient medium can be recorded with a camera and evaluated on the exact positioning of the individual colonies, for example on the XY coordinates of the individual colonies on the flat nutrient medium.
- the identification mark of the nutrient medium carrier in particular the Petri dish, can be supplemented by sample or colony and thus specified in more detail.
- a selection criterion - or several selection criteria - can be defined according to which the assignment sequence is to take place. Criteria for the selection can be for example: a selection according to the counting method (for example assignment of every nth [unoccupied] sample location), random selection, consideration of an exclusion list with already prepared sample locations.
- the sequence in which the sample locations fulfilling the criteria and thus selected can be specified in principle as desired, for example, it can follow a numbering of the sample types in question on the sample carrier from smaller to larger numbers.
- An optical image or a sequence of images is then projected onto the sample carrier, which is configured such that the first selected sample location-in one variant, also several sample locations-is highlighted relative to other sample locations. This can now be manually occupied by a specialist.
- an identification tag of the highlighted sample location can be read in between these steps in order to enable later assignment to the sample source location.
- the emphasis can be ended, in the case of a video projection, for example, this can be turned off.
- the projected image can also be changed.
- the identifiers can then be assigned to each other and stored on a suitable storage medium, in particular an electronic memory.
- An improved placement aid for manual sample preparation in particular on level MALDI sample carriers, comprises a receptacle for a sample carrier with a plurality of sample locations, which is adapted to standardized sample carriers for ionization with matrix-assisted laser desorption, a device which a two-dimensional optical image, or image sequence, onto which the specimen-bearing front side of the specimen carrier is thrown, the image or image sequence being arranged such that a selected specimen location, or a group of selected specimen venues, at least opposite thereto highlighting non-selected sample locations in a manner humanely perceivable to a human, an interface for confirming occupancy by hand and / or a device for automatically detecting a manual occupancy procedure, and a guidance system including a sample location, or G group of sample locations, selects and controls the device accordingly. Also disclosed is a method for assisting a manual occupancy of sample locations.
Description
Die Erfindung betrifft ein Verfahren zur Unterstützung der händischen Präparation von Proben auf einem Probenträger für die Ionisierung mit matrix-unterstützter Laserdesorption sowie eine entsprechende Belegungshilfe.The invention relates to a method for supporting the manual preparation of samples on a sample carrier for ionization with matrix-assisted laser desorption and a corresponding assignment aid.
Im Stand der Technik sind Belegungshilfen insbesondere für den Gebrauch mit Mikrotitrationsplatten bekannt geworden.Occupancy aids have become known in the prior art, in particular for use with microtitration plates.
Das Gebrauchsmuster
Im Gegensatz zu Mikrotitrationsplatten sind Probenträger für die Ionisierung mit matrix-unterstützter Laserdesorption im Regelfall undurchsichtig. Dies ergibt sich durch deren elektrische Leitfähigkeit, die dazu dient, statischen Aufladungen am Probenträger, die sich während der Laserdesorption bilden können, vorzubeugen. Elektrische Leitfähigkeit ist für Mikrotitrationsplatten grundsätzlich unerwünscht, weil die Kavitäten - im Gegensatz zu den flachen, mit der übrigen Oberfläche weitgehend fluchtend ausgelegten Probenorten auf MALDI-Probenträgern - eine größere Wechselwirkungsfläche mit der eingefüllten Probenflüssigkeit bieten. Diese vergrößerte Wechselwirkungsfläche kann - bei vorhandener Leitfähigkeit und flüssigen Proben - unerwünschte Grenzflächenprozesse, beispielsweise die Ablagerung von in der Flüssigkeit gelösten Ladungsträgern wie Salzen, oder chemische Grenzflächenreaktionen fordern.In contrast to microtitration plates, sample carriers for ionization with matrix-assisted laser desorption are usually opaque. This is due to their electrical conductivity, which serves to prevent static charges on the sample carrier, which can form during the laser desorption. Electrical conductivity is fundamentally undesirable for microtitration plates, because the cavities-in contrast to the flat sample samples with a largely aligned design on MALDI sample carriers-have a larger interaction surface with the filled sample liquid. This increased interaction area can - with existing conductivity and liquid samples - unwanted interfacial processes, such as the deposition of dissolved in the liquid charge carriers such as salts, or require chemical interface reactions.
Die Patentschrift
Die Veröffentlichung
Andere Veröffentlichungen, die sich mit der Probenpräparation auf Mikrotitrationsplatten beschäftigen sind
Die Veröffentlichung
Die Veröffentlichung
Die Offenlegungsschrift
Eine Belegungshilfe, die für ebene und undurchsichtige MALDI-Probenträger geeignet ist, wird in der deutschen Patentanmeldung
Es besteht also weiterhin ein Bedarf, eine verbesserte Belegungshilfe für die Probenpräparation auf Probenträgern der matrixunterstützten Laserdesorption und -ionisation zu schaffen.Thus, there remains a need to provide an improved placement aid for sample preparation on sample carriers of matrix assisted laser desorption and ionization.
Die Erfindung schlägt eine Belegungshilfe für die händische Präparation von Proben auf einem Probenträger für die Ionisierung mit matrix-unterstützter Laserdesorption vor. Sie enthält eine Aufnahme für einen Probenträger mit mehreren Probenorten, die bevorzugt an standardisierte Probenträger für die Ionisierung mit matrix-unterstützter Laserdesorption angepasst ist. Weiterhin ist eine Vorrichtung vorgesehen, die ein zwei-dimensionales optisches Bild, oder eine entsprechende Bildfolge, auf die die Probenorte aufweisende Vorderseite des Probenträgers wirft, wenn der Probenträger in der Aufnahme angeordnet ist, wobei das Bild, oder die Bildfolge, so ausgelegt ist, dass ein ausgewählter Probenort, oder eine Gruppe von ausgewählten Probenorten, zumindest gegenüber dazu benachbarten nicht-ausgewählten Probenorten in für einen Menschen visuell wahrnehmbarer Weise hervorgehoben wird. Ferner sind eine Schnittstelle zur Bestätigung der Belegung von Hand oder eine Einrichtung zur automatisierten Erfassung eines händischen Belegungsvorgangs vorhanden. Mit einem Leitsystem können ein Probenort, oder eine Gruppe von Probenorten, ausgewählt und die Vorrichtung entsprechend angesteuert werden.The invention proposes an allocation aid for the manual preparation of samples on a sample carrier for ionization with matrix-assisted laser desorption. It contains a holder for a sample carrier with several sample types, which is preferably adapted to standardized sample carriers for ionization with matrix-assisted laser desorption. Furthermore, a device is provided which throws a two-dimensional optical image, or a corresponding image sequence, onto the front side of the sample carrier having the sample location when the sample carrier is arranged in the receptacle, the image or the image sequence being designed such that highlighting a selected sample location, or group of selected sample locations, at least opposite non-selected sample locations adjacent thereto in a human visual manner. Furthermore, an interface for confirming the occupancy by hand or a device for the automated detection of a manual occupancy process are available. With a control system, a sample location, or a group of sample locations, can be selected and the device can be controlled accordingly.
Der Begriff zweidimensionales Bild ist im Rahmen der vorliegenden Offenbarung weit zu verstehen. Es ist beispielsweise möglich, zwei zweidimensionale Bilder jeweils nacheinander in schneller Abfolge auf den Probenträger zu projizieren, so dass für einen Betrachter, gegebenenfalls unter Einsatz eines Hilfsmittels wie einer Brille, ein dreidimensionaler Bildeindruck auf der Probenträgervorderseite entsteht. Eine Komponente eines solchen "3D"-Bildes könnte jedoch ebenfalls eine zweidimensionale Abbildung sein.The term two-dimensional image is to be understood in the context of the present disclosure. For example, it is possible to project two two-dimensional images one after the other onto the sample carrier in rapid succession, so that a viewer, possibly using an aid such as a pair of glasses, creates a three-dimensional image impression on the sample carrier front side. However, a component of such a "3D" image could also be a two-dimensional map.
Vorzugsweise weist die Vorrichtung einen Flächenlichtmodulator, einen Flüssigkristall-Projektor, oder Flüssigkristall-auf-Silizium-Projektor auf Auf diese Weise lässt sich mit gängigen Video-Projektionsverfahren ein sehr flexibles Bild, oder eine sehr variantenreiche Bildfolge, auf dem Probenträger generieren. Die Vorderseite des Probenträgers fungiert demnach sozusagen als "Leinwand" des projizierten Bildes. Der Ausgestaltung des Bildes sind bezüglich Farbwahl einzelner Bildelemente (Pixel), Helligkeit und/oder Bildsequenz kaum Grenzen gesetzt.The device preferably has a surface light modulator, a liquid crystal projector, or a liquid crystal on silicon projector. In this way, a very flexible image, or a very varied image sequence, can be generated on the sample carrier using conventional video projection methods. The front of the sample carrier thus acts as a "canvas" of the projected image. The design of the image with respect to color choice of individual pixels (pixels), brightness and / or image sequence are virtually unlimited.
Flächenlichtmodulatoren werden insbesondere in Videoprojektoren eingesetzt, wie sie beispielsweise von Texas Instruments, Inc. (Dallas, Vereinigte Staaten von Amerika), unter dem Namen Digital Light Processing (DLP) vertrieben werden. Ein solcher Flächenlichtmodulator besteht im Wesentlichen aus matrixförmig angeordneten Mikrospiegelaktuatoren, das heißt verkippbar spiegelnden Flächen geringer Kantenlänge, die in sehr großer Zahl auf geringem Raum wie einem Mikrochip untergebracht werden können. Die Bewegung der Aktuatoren wird durch die Kraftwirkung elektrostatischer Felder hervorgerufen. Jeder Mikrospiegel lässt sich in seinem Winkel einzeln verstellen und besitzt in der Regel zwei stabile Endzustände, zwischen denen er mit einer Frequenz von mehreren Kilohertz wechseln kann. Mittels der Schaltfrequenz lässt sich die Helligkeit eines Bildelements einstellen. Die Anzahl der Spiegel entspricht der Auflösung des projizierten Bildes, wobei ein Spiegel ein Bildelement, oder auch mehrere Bildelemente, darstellen kann. Mittlerweile sind Auflösungen bis zu 4160 mal 2080 Bildelemente möglich. Darüber hinaus können auch sehr kontrastreiche Abbildungen auf geringer Fläche erzeugt werden.Surface light modulators are particularly used in video projectors such as those sold by Texas Instruments, Inc. (Dallas, United States of America) under the name Digital Light Processing (DLP). Such a surface light modulator essentially consists of micromirror actuators arranged in the form of a matrix, that is to say tiltable reflecting surfaces of small edge length, which can be housed in very large numbers in a small space such as a microchip. The movement of the actuators is caused by the force of electrostatic fields. Each micromirror can be individually adjusted in its angle and usually has two stable end states, between which it can switch at a frequency of several kilohertz. By means of the switching frequency, the brightness of a picture element can be adjusted. The number of mirrors corresponds to the resolution of the projected image, wherein a mirror can represent one or more picture elements. Meanwhile, resolutions of up to 4160 by 2080 pixels are possible. In addition, very high-contrast images can be generated in a small area.
Wird eine weißes Licht ausstrahlende Projektionslampe verwendet, deren Licht von den Mikrospiegelchen reflektiert wird, lässt sich zur Erzeugung eines farbigen Bildes in den Lichtweg vor dem Flächenlichtmodulator ein Farbrad schalten, auf dem Farbfilter der Grundfarben rotieren (in der Regel rot, grün und blau, teilweise aber auch noch weitere). Um bessere Helligkeitswerte im Weißen zu erreichen, kann dem Farbrad auch noch ein weißer Sektor hinzugefügt werden. Mit der Stellung des Farbfilters wechselt die Elektronik das Teilbild, das vom Modulator reflektiert wird. Auf Grund der Drehgeschwindigkeit des Farbrads und der Trägheit des menschlichen Auges werden die Teilbilder zu einem farbigen Bildeindruck addiert. Hohe Umdrehungszahlen des Farbrades oder das Vorsehen mehrerer Farbsegmente gewährleisten eine glatte, übergangslose Farbdarstellung in der Projektion.If a projection lamp emitting white light is used, whose light is reflected by the micromirrors, a color wheel can be switched in the light path in front of the area light modulator, on which color filters of the primary colors rotate (usually red, green and blue, partially but also more). In order to achieve better brightness values in white, the color wheel can also be added to a white sector. With the position of the color filter, the electronics changes the part of the image, the Modulator is reflected. Due to the rotational speed of the color wheel and the inertia of the human eye, the partial images are added to a colored image impression. High rotational speeds of the color wheel or the provision of multiple color segments ensure a smooth, seamless color representation in the projection.
In einer anderen Variante lässt sich die Farbdarstellung durch Zerlegung des weißen Projektionslampenlichts mittels dichroitischer Spiegel in die drei Grundfarben rot, grün und blau und deren einzelne Weiterleitung auf drei unterschiedliche Modulatoren erreichen. Die jeweilige Teilreflexion kann dann in einem dichroitischen Prisma, welches zwei gekreuzte dichroitische Spiegel enthält, wieder zum kompletten Farbbild addiert werden. Für diese Variante sind zusätzliche Mikrospiegelsätze erforderlich. In einigen Ausführungsformen kann die Farbdispersion auch durch ein dichroitisches Prisma hervorgerufen werden.In another variant, the color representation can be achieved by decomposing the white projection lamp light by means of dichroic mirrors into the three primary colors red, green and blue and their individual transmission to three different modulators. The respective partial reflection can then be added back to the complete color image in a dichroic prism which contains two crossed dichroic mirrors. Additional micromirror sets are required for this variant. In some embodiments, the color dispersion may also be caused by a dichroic prism.
In weiteren Ausführungsformen können statt einer einzelnen Weißlichtquelle auch einzelne farbige Lichtquellen, beispielsweise einzelne Leucht-LEDs (rot, grün, blau), verwendet werden.In further embodiments, instead of a single white light source, it is also possible to use individual colored light sources, for example individual light-emitting LEDs (red, green, blue).
In verschiedenen Ausführungsformen kann die Vorrichtung ein Bild oder eine Bildfolge generieren, wodurch an dem ausgewählten Probenort, oder der Gruppe von Probenorten, ein Helligkeits- und/oder Farbkontrast zumindest zu benachbarten nicht-ausgewählten Probenorten entsteht.In various embodiments, the device may generate an image or image sequence, thereby producing a brightness and / or color contrast at least to adjacent non-selected sample locations at the selected sample location, or group of sample locations.
Besonders bevorzugt ist es, wenn die Vorrichtung eine Bildfolge erzeugt, die einen Probenort oder eine Gruppe von Probenorten blickfangmäßig hervorhebt, zum Beispiel, indem das Bild an der Stelle des hervorzuhebenden Probenorts eine Signalfarbe (wie rot, gelb oder auch grün) aufweist, die vom menschlichen Auge besonders gut wahrgenommen wird, wohingegen die anderen Teile des Bildes oder der Bildfolge gedeckte Farben (wie grau oder braun) enthalten, die üblicherweise hinter den Signalfarben zurücktreten. Mit Bildfolgen lassen sich auch Flacker- oder Blinkeffekte erzielen, wenn beispielsweise eine Reihe von projizierten Bildern wechselnde Intensitäts- und/oder Farbbereiche aufweist.It is particularly preferred for the device to generate an image sequence that highlights a sample location or a group of sample locations in an eye-catching manner, for example by the image having a signal color (such as red, yellow or even green) at the location of the sample location to be highlighted whereas the other parts of the image or sequence of images contain muted colors (such as gray or brown) that usually recede behind the signal colors. Flickering or blinking effects can also be achieved with image sequences if, for example, a series of projected images has varying intensity and / or color ranges.
Die Aufnahme der Belegungshilfe ist, vorzugsweise geometrisch, an standardisierte Probenträger für die Ionisierung mit matrix-unterstützter Laserdesorption angepasst. Diese Anpassung kann auch mit Adapterstücken erfolgen, die in eine Aufnahme eingesetzt werden. Auf diese Weise lassen sich Probenträger verschiedener Konfigurationen oder Abmessungen in die Aufnahme einpassen. Dadurch kann eine bündige und/oder fluchtende Anordnung der Probenträger in der Aufnahme erzielt werden. Die Standardisierung der Probenträger bestimmt sich insbesondere über deren geometrische Abmessungen wie Höhe, Länge, Breite oder Fläche, die Anzahl der Probenorte und/oder deren Form und/oder deren Größe oder deren (Matrix-)Anordnung, insbesondere in Reihen und Spalten. Dabei ist zu berücksichtigen, dass Probenträger, die in Flugzeitmassenspektrometern mit axialem Ioneneinschuss und Laserdesorptionsverfahren Anwendung finden, mit einer möglichst ebenen Vorderseite ausgeführt sein müssen, damit möglichst einfache Randbedingungen für in dem Raum vor der Probenträgervorderseite aufgespannte elektrische Felder bestehen. Dies erleichtert die Kontrolle des Gebietes im Phasenraum (aufgespannt durch Orts- und Impulskoordinaten), das von den bei der Laserdesorption entstehenden, interessierenden Ionen eingenommen wird. Kavitäten, wie sie in Mikrotitrationsplatten eingearbeitet sind, eignen sich dafür nicht.The inclusion of the assignment aid is adapted, preferably geometrically, to standardized sample carriers for ionization with matrix-assisted laser desorption. This adjustment can also be done with adapters that are used in a recording. In this way, sample carriers of different configurations or dimensions can be fitted in the receptacle. As a result, a flush and / or aligned arrangement of the sample carriers in the receptacle can be achieved. The standardization of the sample carriers is determined in particular by their geometric dimensions such as height, length, width or area, the Number of sample locations and / or their shape and / or their size or their (matrix) arrangement, in particular in rows and columns. It should be noted that sample carriers, which are used in time-of-flight mass spectrometers with axial ion injection and laser desorption, must be designed with as flat a front as possible, so that the simplest possible conditions exist for spanned in the space in front of the sample carrier front electrical fields. This facilitates the control of the area in phase space (spanned by place and momentum coordinates) occupied by the ions of interest arising during laser desorption. Cavities as incorporated in microtitration plates are not suitable for this purpose.
Die Betriebsweise der Vorrichtung kann beinhalten, dass sie an dem ausgewählten Probenort einen Helligkeits- und/oder Farbkontrast zumindest zu benachbarten nicht-ausgewählten Probenorten erzeugt. Beispielsweise kann ein ausgewählter Probenort mit intensivem gelbem oder rotem Licht bestrahlt werden, während der Rest des optischen Bildes einen eher intensitätsschwachen Grauton aufweist.The operation of the device may include generating brightness and / or color contrast at least at adjacent non-selected sample locations at the selected sample location. For example, a selected sample location can be irradiated with intense yellow or red light, while the rest of the optical image has a rather low intensity gray tone.
Das Leitsystem als Teil der Belegungshilfe lässt sich mit einer Schnittstelle für eine Dateneingabe oder Datenausgabe versehen. Dies ist insbesondere von Nutzen, wenn ein Anwender einen Belegungsplan eines zu bearbeitenden Probenträgers in das Leitsystem eingeben oder einlesen lassen möchte. Die Schnittstelle kann beispielsweise auch mittels händischer Eingabe für eine Bestätigung eines vorgenommenen Belegungsvorgangs verwendet werden. Auf diese Weise lässt sich eine Sequenz an Belegungsvorgängen prozesssicher durchführen. In einer Erweiterung kann die Schnittstelle auch eine Fernkommunikationsfunktion aufweisen, beispielsweise zum Empfang von Probenherkunftsdaten und/oder entsprechenden Identifizierungskennzeichen, die dann mit den Belegungsdaten und/oder entsprechenden Identifizierungskennzeichen der belegten Probenorte zwecks Zuordnung gespeichert werden können. Die Fernkommunikationsfunktion kann auch das Aussenden entsprechender Daten umfassen. Die Fernkommunikationsfunktion lässt sich mit bekannten Fernkommunikationsmitteln wie einer Funk-, Bluetooth-, Infrarot- oder einer sonstigen Schnittstelle einrichten.The control system as part of the assignment aid can be provided with an interface for data input or data output. This is particularly useful when a user wants to enter or read in an occupancy plan of a sample carrier to be processed in the control system. The interface can also be used, for example, by manual input for confirmation of an assignment process made. In this way, a sequence of occupancy processes can be carried out reliably. In an extension, the interface may also have a remote communication function, for example for receiving sample origin data and / or corresponding identification mark, which can then be stored with the occupancy data and / or corresponding identification mark the occupied sample locations for the purpose of assignment. The remote communication function may also include transmitting corresponding data. The remote communication function can be set up with known remote communication means such as a radio, Bluetooth, infrared or other interface.
Das Leitsystem kann überdies einen Speicher zur Zuordnung und Aufnahme von Identifizierungskennzeichen von Proben und Probenorten aufweisen. Dort sind die vorgenommenen Zuordnungen sicher aufgehoben und können für eine spätere Auswertung oder Überprüfung beliebig oft abgerufen werden.The control system may further comprise a memory for the allocation and recording of identification marks of samples and sample locations. There, the assignments made are safe and can be retrieved as often as desired for later evaluation or review.
Die Belegungshilfe kann in einer Ausführungsvariante stationär sein. Dann ist sie vorzugsweise in einem Arrangement einer Aufzuchtplattenstütze, auf der sich beispielsweise Petrischalen zur Probenentnahme anordnen lassen, und einer Probenbeschickungsstation für ein Massenspektrometer mit einer Laserdesorptionseinrichtung derart angeordnet, dass eine möglichst zeitsparende Übertragung der Proben von einer Aufzuchtplatte in der Aufzuchtplattenstütze auf einem Probenträger in der Belegungshilfe und von dort zu der Beschickungsstation möglich ist.The allocation aid can be stationary in one embodiment. Then it is preferably in an arrangement of a breeding plate support on which, for example, Petri dishes arrange for sampling, and arranged a sample loading station for a mass spectrometer with a laser desorption so that the most time-saving transfer of samples from a rearing plate in the rearing plate support on a sample carrier in the assignment aid and from there to the loading station is possible.
In einer weiteren Variante kann die Belegungshilfe aber auch portabel ausgebildet sein. Als portables Handgerät beispielsweise kann die Belegungshilfe von einem Anwender wie eine Malerpalette auf beziehungsweise an der Hand getragen werden. In diesem Fall weist die Belegungshilfe vorzugsweise eine Halteeinrichtung wie einen Griff, an die Finger einer menschlichen Hand angepasste Sacklöcher, oder ein Halteband auf, mit dem sie an einem Arm eines Anwenders festschnallbar ist. Die Portabilität lässt sich aber auch dadurch erzielen, dass die Belegungshilfe in der Art eines Bauchladens ausgestaltet, also zum Beispiel mit wenigstens einem Schulter- beziehungsweise Nackenriemen versehen ist, so dass sie von einem Anwender vor dem Bauch oder der Brust getragen werden kann. Diese Variante hat den Vorteil, dass der Anwender beide Hände frei hat. Durch die Portabilität wird die Handhabung der Belegungshilfe flexibler, ist insbesondere nicht mehr örtlich eingeschränkt.In a further variant, the assignment aid can also be designed to be portable. As a portable handset, for example, the assignment aid can be worn by a user such as a painter's palette on or on the hand. In this case, the placement aid preferably has a holding device such as a handle, adapted to the fingers of a human hand blind holes, or a tether, with which it is festschnallbar on an arm of a user. However, the portability can also be achieved in that the placement aid designed in the manner of a belly shop, so for example provided with at least one shoulder or neck strap, so that it can be worn by a user in front of the abdomen or chest. This variant has the advantage that the user has both hands free. Due to the portability, the handling of the assignment aid is more flexible, in particular is no longer locally limited.
Zusammen mit der Ausbildung der Belegungshilfe als portables Gerät, insbesondere Handgerät, kann eine Andockstation vorgesehen werden, die vorzugsweise stationär ist und eine Aufnahme für die Belegungshilfe aufweist. Ein Anwender kann, wenn er die nötige Freiheit benötigt, die am Körper oder in der Hand getragene portable Belegungshilfe in der Aufnahme absetzen und sich weiteren Arbeiten, bei denen die Belegungshilfe nicht erforderlich ist, widmen. In der Andockstation kann die Belegungshilfe Daten einer ausgeführten Belegungssequenz auf einen stationären, in der Station befindlichen Rechner übertragen. Ebenso wäre es möglich und sinnvoll, eine elektrische Verbindung herzustellen, um etwaige Akkumulatoren der Belegungshilfe, die die Energie für deren Betrieb liefern, wiederaufzuladen.Together with the formation of the assignment aid as a portable device, in particular handheld device, a docking station can be provided, which is preferably stationary and has a receptacle for the assignment assistance. A user can, if he needs the necessary freedom, dedicate the worn on the body or in the hand portable assignment aid in the recording and to other work in which the assignment aid is not required to devote. In the docking station, the assignment aid can transfer data of an executed assignment sequence to a stationary computer located in the station. It would also be possible and useful to make an electrical connection to recharge any accumulators of the occupancy aid that provide the energy for their operation.
Falls eine Einrichtung zur automatisierten Erfassung vorhanden ist, umfasst sie bevorzugt einen Streulichtsensor. Der Streulichtsensor ist vorzugsweise über der Aufnahme angeordnet und dient insbesondere dazu, Änderungen des Streulichtverhaltens, die auf einen händischen Belegungsvorgang hindeuten, an der Vorderseite eines in der Aufnahme befindlichen Probenträgers, insbesondere ortsaufgelöst, zu erkennen. Neben der Variante der ortsaufgelösten Erfassung kann auch gezielt nach einem Streulichtsignal von dem für den nächsten anstehenden Belegungsvorgang vorgesehenen (und hervorgehobenen) Probenort gesucht werden. In dieser zweiten Variante wäre die zeitliche Korrelation beziehungsweise Synchronisation der visuellen Hervorhebung mit der Detektion eines Streulichtereignisses eine wichtige Kenngröße. Das Streulicht kann grundsätzlich von dem optischen Bild und/oder von einem separat erzeugten und auf den Probenträger (gegebenenfalls auf den hervorgehobenen Probenort auf dem Probenträger) geworfenen Lichtstrahl stammen. Für die ortsaufgelöste Erkennung einer händischen Belegung kann vor der Belegung ein ausgewählter Probenort einzeln beleuchtet und das davon ausgehende Streulicht mit einem integral messenden Streulichtsensor gemessen werden. Die Streulichtmessung kann nach der Bestätigung der händischen Belegung durch den Anwender oder in zeitlichen Abständen automatisch wiederholt werden. Aus den Unterschieden der Streulichtintensitäten bzw. deren Ausbleiben kann auf eine korrekte bzw. fehlerhafte Belegung des ausgewählten Probenortes geschlossen werden. Für eine Gruppe von ausgewählten Probenorten kann die Streulichtmessung nacheinander jeweils für die verschiedenen Probenorte der Gruppe einzeln durchgeführt werden. Das Licht für die Ausleuchtung der einzelnen ausgewählten Probenorte wird bevorzugt mit der Vorrichtung erzeugt, die das zwei-dimensionale optische Bild auf den Probenträger wirft, kann aber auch durch eine entsprechende zweite Vorrichtung erzeugt werden, insbesondere in dem für den Anwender nicht visuell wahrnehmbaren infraroten Spektralbereich. Eine Bildfolge kann bei der Auswertung des Streulichtsignals mittels Frequenzfiltern hilfreich sein.If an automated detection device is present, it preferably comprises a scattered light sensor. The scattered-light sensor is preferably arranged above the receptacle and serves, in particular, to detect changes in the scattered-light behavior which indicate a manual occupying process on the front side of a sample carrier located in the receptacle, in particular spatially resolved. In addition to the variant of spatially resolved detection, it is also possible to search in a targeted manner for a scattered light signal from the sample location provided (and highlighted) for the next pending occupancy procedure. In this second variant, the temporal correlation or synchronization of the visual highlighting with the detection of a scattered light event an important parameter. The scattered light can basically originate from the optical image and / or from a separately generated light beam which is thrown onto the sample carrier (possibly onto the highlighted sample location on the sample carrier). For the spatially resolved detection of a manual occupancy, a selected sample location can be illuminated individually prior to occupancy, and the scattered light emanating therefrom can be measured with an integrally measuring scattered light sensor. The scattered light measurement can be automatically repeated after confirmation of manual occupancy by the user or at intervals. From the differences in the scattered light intensities or their absence can be concluded that a correct or incorrect occupancy of the selected sample location. For a group of selected sample locations, the scattered light measurement can be performed one at a time for each of the different sample locations of the group individually. The light for the illumination of the individual selected sample locations is preferably generated by the device which throws the two-dimensional optical image onto the sample carrier, but can also be generated by a corresponding second device, in particular in the infrared spectral range which is not visually discernible to the user , An image sequence can be helpful in the evaluation of the scattered light signal by means of frequency filters.
Zusätzlich oder alternativ zu dem Streulichtsensor kann auch eine Kamera mit Bilderkennung für eine automatische Erfassung der Belegung zum Einsatz kommen.In addition or as an alternative to the scattered light sensor, a camera with image recognition can also be used for an automatic detection of the occupancy.
Insbesondere auf den metallisch scheinenden Oberflächen eines MALDI-Probenträgers können Änderungen des Streulichtverhaltens sehr verlässlich detektiert werden. Ist der Sensor auf einen zu belegenden Probenort ausgerichtet, wird durch den Belegungsvorgang zunächst ein stark variierendes Streulichtsignal zu erwarten sein, wenn der Anwender seine Pipette oder seinen Impfstempel beispielsweise durch den Lichtkegel des zweidimensionalen optischen Bildes oder den Lichtstrahl der separaten Lichtquelle bewegt. Wird der Impfstempel zurückgezogen, ergeben sich die Änderungen des Streulichtverhaltens an dem frisch belegten Probenort aus der abgelegten Probe (oder eben nicht, falls die Belegung nicht erfolgreich war oder an der falschen Stelle erfolgte).Especially on the metallic shining surfaces of a MALDI sample carrier, changes in the scattered light behavior can be detected very reliably. If the sensor is aligned with a sample location to be occupied, the occupation process initially expects a strongly varying scattered light signal if the user moves his pipette or his vaccum stamp, for example, through the light cone of the two-dimensional optical image or the light beam of the separate light source. If the vaccination stamp is withdrawn, the changes in the scattered light behavior at the freshly occupied sample location result from the deposited sample (or not at all if the assignment was unsuccessful or took place in the wrong place).
Werden mehr als nur der demnächst zur Belegung vorgesehene Probenort von dem Sensor überwacht, kann gegebenenfalls auch eine Fehlbelegung erkannt werden, wenn nämlich eine Streulichtänderung an einem anderen als dem für die nächste Belegung vorgesehenen Probenort aufscheint. Ebenfalls ist es möglich, über Änderungen des Streulichtverhaltens eines Teils der Oberfläche des Probenträgers eine Belegung von Hand zu bestätigen. So kann auf der Vorderseite des Probenträgers, alternativ auch im Randbereich der Aufnahme, ein bestimmter Bereich für die Belegungsbestätigung ausgewiesen sein, in dem sich keine Probenorte befinden und der mit dem Streulichtsensor überwacht wird. Nach erfolgter Belegung kann der Anwender mit dem Impfstempel über den ausgewiesenen Bereich fahren und somit ein temporäres Streulichtänderungssignal erzeugen, das einen angeschlossenen Prozessor dazu bringt, mit dem nächsten Probenort einer Belegungssequenz fortzufahren. Der Begriff Randbereich ist weit zu verstehen und soll nicht nur Areale der Aufnahme selbst beschreiben, sondern kann auch (zumeist randständige) Bereiche des Probenträgers einschließen.If more than just the sample location intended for occupancy is monitored by the sensor, an incorrect occupancy may also be detected if, in fact, a scattered light change appears at a sample location other than that intended for the next occupancy. It is also possible to confirm an occupancy by hand via changes in the scattered light behavior of a part of the surface of the sample carrier. So can on the Front of the sample carrier, alternatively also in the edge area of the receptacle, a certain area for the occupancy confirmation must be designated, in which no sample locations are and which is monitored with the scattered light sensor. After occupancy, the user can travel with the vaccination stamp over the designated area and thus generate a temporary flare change signal that causes a connected processor to proceed to the next sample location of an occupancy sequence. The term border area is to be understood broadly and is not only intended to describe areas of the image itself, but may also include (mostly marginal) areas of the sample carrier.
In weiteren Ausführungsformen kann das Bild, oder die Bildfolge, in einen den ausgewählten Probenort, oder die ausgewählten Probenorte, hervorhebenden Bereich und in einen dem Anwender Informationen anzeigenden Bereich aufgeteilt ist. Der Anzeigebereich kann zum Beispiel eine Textanzeige mit Informationen über die aufzubringende Probe umfassen.In other embodiments, the image, or image sequence, may be divided into an area highlighting the selected sample location, or the selected sample locations, and an area displaying information to the user. The display area may include, for example, a text display with information about the sample to be applied.
Die Erfindung offenbart überdies ein Verfahren zur Unterstützung der händischen Präparation von Proben auf einem ebenen Probenträger für die Ionisierung mit matrix-unterstützter Laserdesorption. Zunächst wird ein Probenträger mit mehreren Probenorten bereitgestellt. Dann wird ein Auswahlkriterium definiert, oder es werden mehrere Auswahlkriterien definiert, nach dem beziehungsweise nach denen eine Belegungssequenz erfolgen soll. Nach dem einen Auswahlkriterium, oder den mehreren Auswahlkriterien, wird eine Menge von Probenorten ausgewählt. Es wird ein zwei-dimensionales optisches Bild, oder eine entsprechende Bildfolge, auf die die Probenorte aufweisende Vorderseite des ebenen Probenträgers geworfen, wobei das Bild, oder die Bildfolge, so ausgelegt ist, dass ein ausgewählter Probenort, oder eine Gruppe von ausgewählten Probenorten, zumindest gegenüber dazu benachbarten nicht-ausgewählten Probenorten in für einen Menschen visuell wahrnehmbarer Weise hervorgehoben wird. Sodann wird eine Probe oder eine Substanz zur Präparation einer Probe (z.B. eine Lösung mit einer MALDI-Substanz) händisch auf dem hervorgehobenen Probenort abgelegt. Die erfolgte Belegung wird von Hand bestätigt und/oder von einem Sensorium automatisch erfasst. Falls die Menge weitere unbearbeitete Probenorte, oder Gruppen von Probenorten, enthält, können die Schritte des Hervorhebens und händischen Belegens mit dem nächsten Probenort der Menge, oder der nächsten Gruppe von Probenorten, wiederholt werden. Anderenfalls wäre die Belegungssequenz vorläufig beendet.The invention further discloses a method for assisting the manual preparation of samples on a planar sample support for matrix-assisted laser desorption ionization. First, a sample carrier with multiple sample locations is provided. Then a selection criterion is defined, or several selection criteria are defined according to which or after which an assignment sequence is to take place. After the one or more selection criteria, a set of sample locations is selected. A two-dimensional optical image, or sequence thereof, is thrown onto the front surface of the planar sample support having the sample locations, the image, or image sequence, being arranged such that a selected sample location, or a group of selected sample locations, at least towards adjacent non-selected sample locations in a manner visually perceptible to a human. Then, a sample or substance for preparing a sample (e.g., a solution containing a MALDI substance) is manually deposited on the highlighted sample site. The occupancy is confirmed by hand and / or automatically detected by a sensorium. If the set contains further unprocessed sample locations, or groups of sample locations, the highlighting and manual picking steps may be repeated with the next sample location of the set, or the next group of sample locations. Otherwise, the assignment sequence would be temporarily terminated.
Ein Anwender, der eine händische Präparation eines Probenträgers durchführen möchte, wird durch die für ihn visuell erkennbare Hervorhebung mittels des Bildes oder der Bildfolge darin unterstützt, die einem Nährmedium - beispielsweise Agarplatte, Bouillon- oder Blutkultur - entnommene oder daraus aufbereitete Probe am richtigen Ort zu deponieren. Die Gefahr von Belegungsfehlern, die im Wesentlichen dadurch entsteht, dass im Regelfall das übertragene Probenmaterial auf Grund seiner geringen Menge visuell kaum wahrnehmbar ist, lässt sich auf diese Weise verringern.A user who wishes to carry out a manual preparation of a sample carrier is assisted by the visualization that is visually recognizable by means of the image or the image sequence therein, which is a nutrient medium - for example agar plate, bouillon or blood culture - to deposit the sample taken or processed from it at the right place. The risk of occupancy errors, which is essentially due to the fact that, as a rule, the transferred sample material is barely perceptible visually due to its small amount, can be reduced in this way.
Die Hervorhebung soll dabei insbesondere reversibel, also aktivierbar und deaktivierbar, sein und sich wieder rückgängig machen lassen, beispielsweise indem das projizierte Bild wahlweise an- oder ausgeschaltet (oder auch gewechselt) wird. Die Arbeit einer Fachkraft soll insbesondere auch dadurch erleichtert werden, dass das Auswählen und das Hervorheben (halb-) automatisch mit elektronisch gestützten Mitteln erfolgen. Ein geringer Verfahrensaufwand lässt sich erreichen, wenn die Hervorhebung des ausgewählten Probenortes auf die dazu unmittelbar benachbarten nicht-ausgewählten Probenorte beschränkt wird, beispielsweise indem der hervorzuhebende Probenort mit einem Bereich des Bildes von heller Farbe oder hoher Lichtintensität belegt wird, wohingegen die unmittelbar anliegenden nicht hervorzuhebenden Probenorte von einem Bereich des Bildes mit dunkler Farbe oder geringer Lichtintensität abgedeckt sind. Der Hervorhebungseffekt kann durch Vergrößerung der Menge an nicht-ausgewählten Probenorten verstärkt werden, im äußersten Fall derart, dass der ausgewählte Probenort gegenüber allen übrigen nicht-ausgewählten Probenorten hervorgehoben wird. In diesem Fall wird das Bild oder die Bildfolge im Wesentlichen auf die gesamte Vorderseite des Probenträgers geworfen.The emphasis should in particular be reversible, that is activatable and deactivatable, and can be reversed again, for example by selectively switching the projected image on or off (or even changed). The work of a specialist should also be facilitated in particular by the fact that the selection and highlighting are done (semi-) automatically with electronically supported means. Low process cost can be achieved if the highlighting of the selected sample location is limited to the immediately adjacent non-selected sample locations, for example by occupying the sample site to be highlighted with a region of the image of light color or high light intensity, whereas those immediately adjacent are not highlighted Sample locations are covered by a region of the image with dark color or low light intensity. The highlighting effect can be enhanced by increasing the amount of non-selected sample locations, in the extreme case such that the selected sample location is emphasized over all other non-selected sample locations. In this case, the image or sequence of images is essentially thrown on the entire front side of the sample carrier.
Im Folgenden wird MALDI als bevorzugte Ionisierungsart angegeben, bei der Ionen während der durch Laser bewirkten Desorption entstehen. Es versteht sich jedoch, dass vorliegend lediglich die Laserdesorption zum Überführen der Analytsubstanzen - mithin Proteine oder Proteinketten - in die Gasphase von Bedeutung ist. Die Art der Ionisierung kann je nach Anwendung frei gewählt werden. Die Laserdesorption kann beispielsweise mit einer chemischen Ionisierung durchgeführt werden (laser desorption chemical ionisation - LDCI). Aber auch andere Ionisierungsarten können Anwendung finden. Entsprechend weit ist der Begriff Ionisierung mit matrix-unterstützter Laserdesorption zu verstehen.In the following, MALDI is given as the preferred type of ionization in which ions are formed during laser-induced desorption. However, it is understood that in the present case only laser desorption is important for transferring the analyte substances - thus proteins or protein chains - into the gas phase. The type of ionization can be freely selected depending on the application. The laser desorption can be carried out, for example, with a chemical ionization ( laser desorption chemical ionization - LDCI). But also other types of ionization can be used. The term ionization with matrix-assisted laser desorption is correspondingly broad.
Der Probenort lässt sich danach auswählen, dass er unbelegt ist. Das Verfahren bietet eine gewisse Flexibilität in verschiedenen Stadien einer Belegungssequenz. Es ist ebenso möglich, eine geometrische Auswahlvorgabe zu machen, zum Beispiel in der Art, dass nur jeder n-te - zum Beispiel jeder zweite - Probenort zu belegen ist. Dies kann dann sinnvoll sein, wenn die Gefahr einer Kreuzkontamination durch Ausgasen einer Probe und Übergang der ausgegasten Probenteilchen in der Gasphase auf einen anderen Probenort bei geringem räumlichen Abstand der belegten Probenorte erhöht ist. In einer Variante kann die Auswahl durch ein elektronikgestütztes technisches Leitsystem, beispielsweise indem alle unbelegten Probenorte belegt werden, alternativ auch durch einen Anwender des Verfahrens erfolgen.The sample location can then be selected to be unoccupied. The method offers some flexibility in different stages of an occupancy sequence. It is also possible to make a geometric range setting, for example in the way that only every nth - for example, every second - sample location must be documented. This can be useful if the risk of cross contamination by outgassing of a sample and transition of the outgassed sample particles in the gas phase to another sample location with a small spatial distance the occupied sample is increased. In a variant, the selection can be made by an electronic-based technical control system, for example by all unoccupied sample locations are occupied, alternatively by a user of the method.
Es können mehrere Probenorte ausgewählt und die Hervorhebung in einem Belegungsprozess wiederholt ausgeführt werden, wobei mit jeder Wiederholung ein anderer ausgewählter Probenort, oder eine andere Gruppe von ausgewählten Probenorten, hervorgehoben wird. Das Verfahren eignet sich somit insbesondere für eine sequenzielle Abarbeitung verschiedener Proben, die aus verschiedenen Kolonien auf einer Aufzuchtplatte stammen und auf einen Probenträger gebracht werden sollen. Bevorzugt ist bei einer solchen sequenziellen Abarbeitung die Verwendung eines Überwachungs- und Kontrollsystems, das den Anwender des Verfahrens bei der Auswahl der zu übertragenden Proben unterstützt.Multiple sample locations may be selected and the highlighting performed repeatedly in an assignment process, with each repeat highlighting a different selected sample location, or a different group of selected sample locations. The method is therefore particularly suitable for sequential processing of various samples, which originate from different colonies on a rearing plate and are to be placed on a sample carrier. Preferably, in such a sequential processing, the use of a monitoring and control system that supports the user of the method in the selection of the samples to be transmitted.
Es wird weiterhin ein Verfahren zur händischen Präparation einer Probe auf einem Probenträger für die Ionisierung mit matrix-unterstützter Laserdesorption vorgeschlagen, in dem die Probe und die Probenorte jeweils mit Identifizierungskennzeichen versehen sind, bei dem ein Probenort gemäß einem oben beschriebenen Verfahren ausgewählt und hervorgehoben wird, die Probe auf den ausgewählten Probenort aufgebracht wird und die Identifizierungskennzeichen einander zugeordnet und gespeichert werden. Auf diese Weise lässt sich nach erfolgter Belegung des Probenträgers nachvollziehen und überprüfen, welche Proben mit welcher Herkunft auf einen bestimmten Probenort übertragen wurden. Dies ermöglicht eine nachträgliche Prozesskontrolle und kann zum Beispiel einen Fehler aufzeigen, wenn eine Probe bestimmter Herkunft auf zwei Probenorte abgelegt wurde, obwohl für jede Probe der entsprechenden Herkunft lediglich ein Probenort vorgesehen war.A process is also proposed for manually preparing a sample on a sample carrier for matrix-assisted laser desorption ionization in which the sample and the sample locations are each provided with identification marks in which a sample location is selected and highlighted according to a method described above, the sample is applied to the selected sample location and the tags are associated and stored. In this way it can be understood after the assignment of the sample carrier and check which samples were transferred from which source to a specific sample location. This allows for subsequent process control and may, for example, indicate an error if a sample of specific origin has been deposited on two sample locations, although only one sample location was provided for each sample of the corresponding origin.
Das Zuordnen und Speichern kann in einem kombinierten Verfahrensschritt gemeinsam oder separat durchgeführt werden. Die Zuordnung kann beispielsweise vor dem eigentlichen Belegungsvorgang, das Speichern nach dem Abschluss des Belegungsvorgangs durchgeführt werden. Eine bestimmte zeitliche Abfolge des Zuordnens und Speicherns während des Verfahrens ist grundsätzlich nicht zwingend. Bevorzugt werden jedoch die Identifizierungskennzeichen nach dem Belegungsvorgang zugeordnet und gespeichert, da so eine Fehlzuordnung beziehungsweise Fehlbelegung leichter erkannt werden kann.The assignment and storage can be carried out jointly or separately in a combined method step. The assignment can be carried out, for example, before the actual allocation process, the storage after the completion of the allocation process. A certain chronological sequence of the assignment and storage during the procedure is basically not mandatory. Preferably, however, the identifiers are assigned and stored after the allocation process, since such a misallocation or incorrect allocation can be more easily detected.
Als Proben sind insbesondere solche mikrobiellen Ursprungs geeignet. Vorzugsweise werden darunter die Mikroorganismen selbst in unbehandelter Form verstanden, wie sie in oder auf einem Nährmedium gezüchtet wurden.As samples, especially those of microbial origin are suitable. Preferably, it is understood to mean the microorganisms themselves in their untreated form, as grown in or on a nutrient medium.
Das Identifizierungskennzeichen der Probe kann von einer Kennzeichnung des Probengefäßes - beispielsweise einer Petrischale - abgeleitet werden, aus dem die Probe stammt. Auf diese Weise wird ein hohes Maß an Sicherheit bei der Probenrückverfolgung gewährleistet. Ebenso ist es möglich, ein Identifizierungskennzeichen zu generieren oder zu ergänzen, indem eine Kamera die Probenquelle, insbesondere das flächige Nährmedium in einer Petrischale, aufnimmt und in der Aufnahme die Koordinaten des Probenherkunftsorts mittels Bildauswertung bestimmt und der Probe zugewiesen werden. Zusätzlich oder alternativ zu einer optischen Abbildung des flächigen Nährmediums kann der Probenherkunftsort auch durch eine Messung der Kapazitätsänderung an dem flächigen Nährmedium im Vergleich vor der Probenentnahme zu nach der Probenentnahme identifiziert werden.The identification mark of the sample can be derived from an identification of the sample vessel - for example a Petri dish - from which the sample originates. This ensures a high level of safety in sample tracking. It is likewise possible to generate or supplement an identification mark by a camera recording the sample source, in particular the planar nutrient medium in a Petri dish, and determining the coordinates of the sample source location in the recording by means of image evaluation and assigning it to the sample. In addition or as an alternative to an optical imaging of the planar nutrient medium, the sample source of origin can also be identified by measuring the change in capacitance on the two-dimensional nutrient medium before the sample is taken after the sample has been taken.
In einer Variante können die Probenherkunftsdaten und/oder Identifizierungskennzeichen über Fernkommunikationsmittel zum Probenpräparations-Instrumentarium übermittelt werden, um dort nach erfolgter Belegung eines Probenortes auf einem Probenträger zusammen mit den Belegungskoordinaten und/oder Identifizierungskennzeichen des Probenträgers beziehungsweise Probenortes gespeichert zu werden. Auf diese Weise ist eine besonders detaillierte Probennachverfolgung möglich.In one variant, the sample origin data and / or identification marks can be transmitted via remote communication means for sample preparation instrumentation to be stored there after occupying a sample location on a sample carrier together with the occupancy coordinates and / or identification mark of the sample carrier or sample location. In this way, a particularly detailed sample tracking is possible.
Im Folgenden wird die Erfindung an Hand von Ausführungsbeispielen in Verbindung mit der beigefügten Zeichnung beschrieben. In der Zeichnung zeigen:
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drei Belegungshilfen in schematischer Darstellung, wie sie in der deutschen Patentanmeldung 10 2010 052 976.1 offenbart werden,Abbildung 1 -
ein schematischer Aufbau einer Belegungshilfe nach Prinzipien der Erfindung,Abbildung 2a-c -
eine detailliertere (schematische) Darstellung eines Projektionsverfahrens,Abbildung 3 -
ein Beispiel eines projizierten Bildes,Abbildung 4 -
Abbildung 5A-C ein Beispiel einer projizierten Bildfolge und -
eine Flussdiagramm-Darstellung von Verfahren gemäß Prinzipien der Erfindung.Abbildung 6
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illustration 1German patent application 10 2010 052 976.1, -
Figure 2a-c a schematic structure of a placement aid according to principles of the invention, -
Figure 3 a more detailed (schematic) representation of a projection method, -
Figure 4 an example of a projected image, -
Figure 5A-C an example of a projected image sequence and -
Figure 6 a flowchart representation of methods according to principles of the invention.
Die
In der
Eine Aufnahme der Belegungshilfe kann aber auch als Rahmen ausgebildet sein (nicht dargestellt). Ein Rahmen, der den Probenträger an den Schmalseiten fixiert, hat den Vorteil, dass sowohl die Vorderseite als auch die Rückseite des Probenträgers für ein Mess- beziehungsweise Untersuchungsinstrumentarium (gegebenenfalls Sensorium) zugänglich sind. Dies erleichtert die Handhabung der Belegungshilfe, insbesondere wenn sie portabel ist.A recording of the assignment aid can also be designed as a frame (not shown). A frame that fixes the sample carrier on the narrow sides has the advantage that both the front side and the rear side of the sample carrier are accessible to a measuring or examination instrument (possibly a sensorium). This facilitates the handling of the assignment aid, especially if it is portable.
An einer Seite der Grundplatte 4 erhebt sich ein Arm oder Träger 12 in die Höhe, an dem eine Abbildungsvorrichtung 14 angeordnet ist. Die Abbildungsvorrichtung 14 kann beispielsweise in der Art eines Videoprojektors ausgebildet sein, wie weiter unten näher erläutert werden wird. Die Abbildungsvorrichtung 14 ist so angeordnet und ausgerichtet, dass sie ein zweidimensionales optisches Bild 16, oder eine entsprechende Bildfolge, auf die Vorderseite eines in der Aufnahme 6 befindlichen Probenträgers 8 werfen kann. Die Abbildungsvorrichtung 14 kommuniziert mit dem Leitsystem 10 und wird von diesem angesteuert, zum Beispiel um anzugeben, welches Bild zur Hervorhebung eines Probenortes, oder einer Gruppe von Probenorten, projiziert werden soll. Die Abbildungsvorrichtung 14 enthält vorzugsweise diverse Optiken, die dafür sorgen, dass das Bild oder die Bildfolge, obwohl es beziehungsweise sie seitlich unter einem bestimmten Winkel auf die Probenträgervorderseite geworfen wird, unverzerrt dargestellt werden.On one side of the
Die Abbildungsvorrichtung 14 ist so angeordnet, dass es einem Anwender möglich ist, weitgehend ungehindert mit einem Impfstempel 18 oder ähnlichem Übertragungsgerät eine mikrobiologische Probe, zum Beispiel Zellen einer mikrobiellen Kolonie, die auf einer Agarplatte angezüchtet wurde, auf einen Probenort auf dem Probenträger 8 zu übertragen.The
Es ist möglich, dass das Leitsystem 10 eine Schnittstelle (nicht gezeigt) aufweist, mittels der ein Anwender eine erfolgte händische Belegung eines Probenortes von Hand bestätigen kann. Der Begriff Bestätigung von Hand ist hierbei weit zu verstehen und kann auch das Eingeben von Identifikationsdaten der nächsten zu präparierenden Probe umfassen, zum Beispiel mittels Einscannen eines Strichcodes auf einer Agarplatte.It is possible that the
Ebenfalls nicht gezeigt ist eine Variante, bei der das Leitsystem 10 mit einem Sensorium zur automatisierten Erfassung von Belegungsvorgängen ausgestattet ist, und somit der Vollzug einer Belegung eines Probenortes automatisch erkannt und an das Leitsystem 10 gemeldet wird. Das automatisierte Erfassen kann natürlich auch das Erkennen von Fehlbelegungen umfassen, wenn also eine Probe auf einem anderen als dem vorgesehenen Probenort abgelegt worden ist.Also not shown is a variant in which the
Beispiele für ein derartiges Sensorium sind in der deutschen Patentanmeldung
Das Leitsystem 10 kann über eine weitere telekommunikative Verbindung zu dem Probenträger 8 bestimmte Konfigurationsdaten des Probenträgers 8 erfassen, beispielsweise Anzahl, Anordnung und Position der einzelnen Probenorte. In einem Beispiel kann ein an dem Probenträger 8 angebrachter Mikrochip, der die entsprechenden Konfigurationsdaten enthält, ausgelesen werden. Alternativ dazu kann das Leitsystem 10 auch eine Kamera und ein optisches Bilderkennungssystem aufweisen (nicht gezeigt), beziehungsweise mit diesem kommunizieren, mit dem die Vorderseite des Probenträgers 8 aufgenommen und darauf erkennbare Merkmale der Probenorte für das Aufbringen von Probenmaterial geortet werden. Diese erkennbaren Merkmale können als Markierungen, beispielsweise ringförmige Einrahmungen, an der Vorderseite ausgebildet sein.The
Die Kommunikation mit der Vorrichtung 14 ermöglicht dem Leitsystem 10 in diesem Beispiel auch, einen Videoprojektor zur Erzeugung eines optischen Bildes auf der Probenträgervorderseite zu (de-)aktivieren, das Bild zu wechseln und gegebenenfalls verschiedene Bildformate auszuwählen. Über eine Schnittstelle können das Erfassen der Konfigurationsdaten, die Auswahl eines Bildes (oder einer Bildfolge) sowie die (De-)Aktivierung des Projektors in einigen Ausführungsformen auch per Hand erfolgen.The communication with the
Ein Anwender der Belegungshilfe kann in einer halbautomatischen Ausführungsform dem Leitsystem 10 den Belegungszustand des Probenträgers 8 eingeben oder einlesen lassen, beispielsweise über eine Schnittstelle. Er kann dabei gleichzeitig das Kriterium vorgeben, nach dem die Probenorte ausgewählt werden sollen. Dies kann beispielsweise ein unbelegter Zustand sein. Das Leitsystem 10 prüft dann, welche der Probenorte für eine Belegung in Frage kommen, wählt davon einen aus (gegebenenfalls auch eine Gruppe), um den entsprechenden Probenort hervorzuheben, wählt das zu projizierende Bild entsprechend aus, beziehungsweise generiert es, und aktiviert den Videoprojektor. Ein Bild oder eine Bildfolge wird dann auf die Vorderseite des Probenträgers 8 geworfen, wobei ein Probenort und gegebenenfalls die ihn umgebende Fläche der Probenträgervorderseite in für einen Menschen visuell wahrnehmbarer Weise gegenüber den anderen Flächen des Probenträgers mit nicht-ausgewählten Probenorten ausgezeichnet wird.A user of the assignment aid can in a semi-automatic embodiment of the
Der Hervorhebungseffekt kann durch eine auf Verstärkung der visuellen Wirkung ausgerichtete Auslegung des Probenträgermaterials verstärkt werden, beispielsweise indem Partikel in das Material des Probenträgers 8 eingearbeitet sind, die bei Beleuchtung einen Glitzer- oder Farbeffekt hervorrufen. Auch eine Art helle Grundierung mit weißen Partikeln kann nützlich sein, um Farbunterschiede in den verschiedenen Bildelementen besser hervortreten zu lassen.The highlighting effect may be enhanced by a visual impact enhancement design of the sample support material, for example by incorporating particles into the
Unterstützt durch diese Hervorhebung kann der Anwender seine Probe auf den korrekten Probenort aufbringen, und dann beispielsweise von Hand über die Schnittstelle die erfolgte Belegung bestätigen. Dies kann dann zur Deaktivierung der Hervorhebung, in diesem Beispiel also dem Ausschalten der Projektion, oder zum Wechsel des dargestellten Bildes führen. In anderen Ausführungsformen kann auch ein Sensorium zur automatischen Erfassung von händischen Belegungsvorgängen zum Einsatz kommen.Supported by this highlighting, the user can apply his sample to the correct sample location, and then, for example, confirm the assignment by hand via the interface. This can then lead to the deactivation of the emphasis, in this example, the turning off of the projection, or to the change of the displayed image. In other embodiments, a sensor for automatic detection of manual occupancy operations may also be used.
Um den Anwender bei der Arbeit nicht zu irritieren, kann die Probenträgervorderseite mit einer Antiglanzbeschichtung versehen sein. Dies vermag blendenden Lichtreflexen, die bei der Projektion des Bildes oder der Bildfolge auftreten könnten, vorzubeugen. Grundsätzlich ist jedoch die Gefahr einer Blendung bei Verwendung eines Projektors zur Bilderzeugung auf dem Probenträger im Gegensatz zu gebündelten Lichtstrahlen gering.In order not to irritate the user at work, the sample carrier front side may be provided with an anti-glare coating. This can prevent dazzling reflections of light that might occur during the projection of the image or the sequence of images. Basically, however, the risk of glare when using a projector for imaging on the sample carrier in contrast to bundled light rays is low.
Das Leitsystem 10 lässt sich mit einem Speicher (nicht gezeigt) zur Zuordnung und Aufnahme von Identifizierungskennzeichen von Proben und Probenorten versehen. Diese Informationen können gegebenenfalls durch einen Anwender über die Schnittstelle eingegeben oder eingelesen werden; alternativ auch per automatischer Datenübertragung.The
An dem Träger 12 kann gemäß einer weiteren Ausführungsform auch ein Streulichtsensor 19 angeordnet sein (wie in
Auf dem Probenträger 8 kann weiterhin ein bestimmtes Areal 21 (
Die
Die Vorrichtung zum Hervorheben weist in diesem Beispiel einen Flächenlichtmodulator auf, der in einem Gehäuse 20 angeordnet ist. Das Gehäuse 20 wird von einem Träger oder Halter gestützt (hier zwecks Vereinfachung der Darstellung nicht gezeigt). Flächenlichtmodulatoren sind nur ein Beispiel für eine Videoprojektionstechnik. Ebenso können Flüssigkristall-Projektoren oder Flüssigkristall-auf-Silizium-Projektoren zum Einsatz kommen. Solche Projektoren haben den Vorteil, dass sie ein sehr flexibles Bild 16, oder eine sehr variantenreiche Bildfolge, auf dem Probenträger 8 generieren können. Der Ausgestaltung des Bildes 16 sind bezüglich Farbwahl einzelner Bildelemente (Pixel), Helligkeit und/oder Bildsequenz kaum Grenzen gesetzt.The highlighting device in this example has a surface light modulator disposed in a
Schematisch in dem Gehäuse 20 dargestellt ist ein Mikrospiegelaktuator 22, auf den von einer geeigneten Projektionslampe 24 über eine abbildende Optik 26A Licht geworfen wird. Von dem Mikrospiegel 22 gelangt das Bild über eine weitere abbildende Optik 26B auf die Vorderseite eines Probenträgers 8. Mikrospiegelaktuatoren 22 können in sehr großer Zahl auf geringem Raum wie einem Mikrochip untergebracht werden. Jeder Mikrospiegel 22 lässt sich in seinem Winkel einzeln verstellen und besitzt in der Regel zwei stabile Endzustände, zwischen denen er mit einer Frequenz von mehreren Kilohertz wechseln kann. Mittels der Schaltfrequenz lässt sich die Helligkeit eines Bildelements einstellen. Die Anzahl der Spiegel entspricht der Auflösung des projizierten Bildes 16, wobei ein Spiegel ein Bildelement, oder auch mehrere Bildelemente, darstellen kann. Es sind Auflösungen bis zu 4160 mal 2080 Bildelemente und damit sehr kontrastreiche Abbildungen auf geringer Fläche möglich. Für die Praxis kann aber auch eine Auflösung von 480 mal 320 Bildelementen befriedigende Ergebnisse liefern. Es können natürlich auch noch geringere Auflösungen gewählt werden, wenn es die konkrete Anwendung zulässt.Schematically illustrated in the
Zur Erzeugung eines farbigen Bildes ist in diesem Beispiel in den Lichtweg vor dem Mikrospiegelaktuator 22 ein Farbrad 28 geschaltet, auf dem Farbfilter der Grundfarben (in der Regel rot, grün und blau, teilweise aber auch noch weitere) rotiert werden. Um bessere Helligkeitswerte im Weißen zu erreichen, kann dem Farbrad 28 auch noch ein weißer Sektor hinzugefügt werden. Mit der Stellung des Farbfilters wechselt die Elektronik das Teilbild, das vom Modulator 22 reflektiert wird. Auf Grund der Drehgeschwindigkeit des Farbrads 28 und der Trägheit des menschlichen Auges werden die Teilbilder zu einem farbigen Bildeindruck addiert. Hohe Umdrehungszahlen des Farbrades 28 oder das Vorsehen mehrerer Farbsegmente gewährleisten eine glatte, übergangslose Farbdarstellung in der Projektion. In einigen Ausführungsformen kann die Farbdispersion auch durch ein dichroitisches Prisma hervorgerufen werden.To generate a colored image, a
In einer anderen, nicht dargestellten Variante lässt sich die Farbdarstellung durch Zerlegung des Projektionslampenlichts mittels dichroitischer Spiegel in die drei Grundfarben rot, grün und blau und deren einzelne Weiterleitung auf drei unterschiedliche Modulatoren erreichen. Die jeweilige Teilreflexion kann dann beispielsweise in einem dichroitischen Prisma, welches zwei gekreuzte dichroitische Spiegel enthält, wieder zum kompletten Farbbild addiert werden.In another, not shown variant, the color representation can be achieved by decomposition of the projection lamp light by means of dichroic mirrors in the three primary colors red, green and blue and their individual forwarding to three different modulators. The respective partial reflection can then be added to the complete color image, for example in a dichroic prism which contains two crossed dichroic mirrors.
Selbstverständlich ist es auch möglich, statt einer einzelnen Weißlichtquelle einzelne farbige Lichtquellen, beispielsweise einzelne Leucht-LEDs (rot, grün, blau), zu verwenden.Of course, it is also possible to use individual colored light sources, for example individual light LEDs (red, green, blue), instead of a single white light source.
Die
Mit einer Farbkodierung der Hervorhebung kann einem Anwender auch angezeigt werden, ob ein ausgewählter Probenort mit einer Probe oder mit welcher Substanz ein ausgewählter Probenort in einem nächsten Verfahrensschritt zu belegen ist. Alternativ könnte eine bestimmte Farbe auch auf den Belegungszustand des ausgewählten Probenorts hinweisen. Ein helles weiß könnte zum Beispiel für einen unbelegten Probenort stehen, gelb für einen mit einer Mikrobenprobe belegten Probenort, rot für ein Aufschluss- oder Extraktionsmittel und grün für eine Matrixlösung. Der Vielseitigkeit des vorliegenden Verfahrens sind diesbezüglich kaum Grenzen gesetzt.With a color coding of the highlighting, a user can also be displayed as to whether a selected sample location with a sample or with which substance a selected sample location is to be assigned in a next method step. Alternatively, a particular color could also indicate the occupancy status of the selected sample site. For example, a bright white could represent a blank sample location, yellow for a microbial sample site, red for a digestion or extractant, and green for a matrix solution. The versatility of the present method has no limits in this regard.
Die Abbildungen 5A, 5B und 5C zeigen ein Ausführungsbeispiel, bei dem eine Bildfolge auf eine Probenträgervorderseite geworfen wird. Die Bildfolge umfasst zwei jeweils senkrecht zueinander angeordnete (jeweils einander entgegengesetzt zeigende) Pfeilpaare, die mit ihren Spitzen auf einen ausgewählten Probenort D5 deuten. In der Bildfolge können die Pfeile von einer weiter außen liegenden Position mit jedem nachfolgenden Bild der Bildfolge immer weiter an die Stelle des Probenorts D5 wandern, bis die Pfeilspitzen die äußeren Umrisse des Probenorts D5 scheinbar berühren. Es versteht sich, dass sich auch ein Einzelbild wie in
Die
Als nächstes kann ein Auswahlkriterium - oder auch mehrere Auswahlkriterien - definiert werden, nach dem die Belegungssequenz erfolgen soll. Kriterien für die Auswahl können zum Beispiel sein: eine Auswahl nach der Zählweise (beispielsweise Belegung jedes n-ten [unbelegten] Probenortes), Zufallsauswahl, Berücksichtigung einer Ausschlussliste mit bereits präparierten Probenorten. Die Reihenfolge, in der die die Kriterien erfüllenden und damit ausgewählten Probenorte zu belegen sind, kann grundsätzlich beliebig vorgegeben werden, beispielsweise kann sie einer Durchnummerierung der in Frage kommenden Probenorte auf dem Probenträger von kleineren zu größeren Ziffern folgen.Next, a selection criterion - or several selection criteria - can be defined according to which the assignment sequence is to take place. Criteria for the selection can be for example: a selection according to the counting method (for example assignment of every nth [unoccupied] sample location), random selection, consideration of an exclusion list with already prepared sample locations. The sequence in which the sample locations fulfilling the criteria and thus selected can be specified in principle as desired, for example, it can follow a numbering of the sample types in question on the sample carrier from smaller to larger numbers.
Auf den Probenträger wird nun ein optisches Bild oder eine Bildfolge projiziert, das beziehungsweise die so ausgestaltet ist, dass der erste ausgewählte Probenort - in einer Variante auch mehrere Probenorte - gegenüber anderen Probenorten hervorgehoben ist. Dieser kann nun händisch von einer Fachkraft belegt werden. Optional kann zwischen diesen Schritten ein Identifizierungskennzeichen des hervorgehobenen Probenortes eingelesen werden, um später eine Zuordnung zu dem Probenherkunftsort zu ermöglichen. Zum Abschluss des Belegungsvorgangs kann die Hervorhebung beendet werden, im Falle einer Videoprojektion kann diese beispielsweise ausgeschaltet werden. Alternativ kann auch das projizierte Bild gewechselt werden. Optional lassen sich dann die Identifizierungskennzeichen einander zuordnen und auf einem geeigneten Speichermedium, insbesondere einem elektronischen Speicher, ablegen. Wenn mehr als ein Probenort die Auswahlkriterien erfüllten, können nun alle weiteren ausgewählten Probenorte iterativ bearbeitet werden, bis keiner der ausgewählten Probenorte übrig ist. Es versteht sich, dass ein weiteres, nicht explizit dargestelltes Kriterium für den Abbruch der Iterationen darin besteht, dass es keine Proben mehr zum Übertragen auf den Probenträger gibt.An optical image or a sequence of images is then projected onto the sample carrier, which is configured such that the first selected sample location-in one variant, also several sample locations-is highlighted relative to other sample locations. This can now be manually occupied by a specialist. Optionally, an identification tag of the highlighted sample location can be read in between these steps in order to enable later assignment to the sample source location. At the end of the assignment process, the emphasis can be ended, in the case of a video projection, for example, this can be turned off. Alternatively, the projected image can also be changed. Optionally, the identifiers can then be assigned to each other and stored on a suitable storage medium, in particular an electronic memory. If more than one sample site met the selection criteria, all other selected sample locations can now be iteratively processed until none of the selected sample locations is left. It is understood that a further, not explicitly shown criterion for terminating the iterations is that there are no more samples for transfer to the sample carrier.
Zusammenfassend schlägt die Erfindung vor: Eine verbesserte Belegungshilfe für die händische Probenpräparation, insbesondere auf ebenen MALDI-Probenträgern, umfasst eine Aufnahme für einen Probenträger mit mehreren Probenorten, die an standardisierte Probenträger für die Ionisierung mit matrix-unterstützter Laserdesorption angepasst ist, eine Vorrichtung, die ein zwei-dimensionales optisches Bild, oder eine entsprechende Bildfolge, auf die die Probenorte aufweisende Vorderseite des Probenträgers wirft, wobei das Bild, oder die Bildfolge, so ausgelegt ist, dass ein ausgewählter Probenort, oder eine Gruppe von ausgewählten Probenorten, zumindest gegenüber dazu benachbarten nicht-ausgewählten Probenorten in für einen Menschen visuell wahrnehmbarer Weise hervorgehoben wird, eine Schnittstelle zur Bestätigung der Belegung von Hand und/oder eine Einrichtung zur automatisierten Erfassung eines händischen Belegungsvorgangs, und ein Leitsystem, das einen Probenort, oder eine Gruppe von Probenorten, auswählt und die Vorrichtung entsprechend ansteuert. Offenbart ist ebenfalls ein Verfahren zur Unterstützung einer händischen Belegung von Probenorten.In summary, the invention proposes: An improved placement aid for manual sample preparation, in particular on level MALDI sample carriers, comprises a receptacle for a sample carrier with a plurality of sample locations, which is adapted to standardized sample carriers for ionization with matrix-assisted laser desorption, a device which a two-dimensional optical image, or image sequence, onto which the specimen-bearing front side of the specimen carrier is thrown, the image or image sequence being arranged such that a selected specimen location, or a group of selected specimen venues, at least opposite thereto highlighting non-selected sample locations in a manner humanely perceivable to a human, an interface for confirming occupancy by hand and / or a device for automatically detecting a manual occupancy procedure, and a guidance system including a sample location, or G group of sample locations, selects and controls the device accordingly. Also disclosed is a method for assisting a manual occupancy of sample locations.
Claims (15)
- Deposition aid (2, 2*) for manual preparation of samples on a sample support (8) for ionization using matrix-assisted laser desorption, the aid comprising:- a base plate (4) containing a holder (6) for a sample support (8) having several sample sites;- an arm or carrier (12) which rises on one side of the base plate (4) in an upward direction and on which an imaging device (14) of the type of a video projector is disposed, wherein the imaging device (14) projects a two-dimensional optical image (16) or a corresponding image sequence from the side at a certain angle onto the front side, having the sample sites, of a sample support (8) arranged in the holder (6), and contains various optics that ensure that the image (16) or the image sequence is illustrated without distortion, and wherein the image (16) or the image sequence is designed such that a selected sample site or a group of selected sample sites is highlighted at least with respect to neighbouring not-selected sample sites in a manner which can be perceived by the human eye;- an interface for confirming manual deposition and/or a device for automated detection of a manual deposition process; and- a control system (10) which selects a sample site or a group of sample sites and correspondingly controls the device (14).
- Deposition aid according to claim 1, characterized in that the device (14) comprises a spatial light modulator, a liquid crystal projector or a liquid-crystal-on-silicon projector.
- Deposition aid according to claim 1 or 2, characterized in that the device (14) generates an image (16) or an image sequence, thereby generating a brightness and/or colour contrast at least with respect to neighbouring not-selected sample sites at the selected sample site or group of sample sites.
- Deposition aid according to any one of the claims 1 to 3, characterized in that the device (14) generates an image sequence which visually highlights a sample site or a group of sample sites.
- Deposition aid according to any one of the claims 1 to 4, characterized in that the two-dimensional optical image (16) or the image sequence substantially covers the overall front side of the sample support (8).
- Deposition aid according to any one of the claims 1 to 5, characterized in that the control system (10) has an interface for data input or data output.
- Deposition aid according to any one of the claims 1 to 6, characterized in that the control system (10) comprises a memory for the assignment and acquisition of identification tags of samples and sample sites.
- Deposition aid according to any one of the claims 1 to 7, characterized in that adapter pieces are provided in the holder (6) for fitting in standardized sample supports (8) for ionization using matrix-assisted laser desorption.
- Deposition aid according to any one of the claims 1 to 8, characterized in that the device for automated detection comprises a scattered light sensor (19) which is designed to detect changes in the scattered light behaviour on the front side of a sample support (8) located in the holder, which changes are indicative of a manual deposition process.
- Deposition aid according to any one of the claims 1 to 9, characterized in that the interface for confirming the deposition comprises a scattered light sensor (19) which is directed to an area (21) in the boundary region of a sample support (8) arranged in the holder, and detects manually produced changes in the scattered light behaviour in this area (21).
- Deposition aid according to any one of the claims 1 to 10, characterized in that the image (16) or the image sequence is divided into an area that highlights the selected sample site or the selected sample sites, and into an area that displays information to the user.
- Method for supporting manual preparation of samples on a sample support for ionization using matrix-assisted laser desorption by using a deposition aid according to any one of the claims 1 to 11, in which:(a) a sample support with several sample sites is provided in the holder,(b) at least one selection criterion is defined according to which a deposition sequence shall be performed,(c) an amount of sample sites is selected in accordance with the at least one selection criterion,(d) a two-dimensional optical image or a corresponding image sequence is projected by the video projector onto the front side of the sample support having the sample sites, wherein the image or the image sequence is designed such that a selected sample site or a group of selected sample sites is highlighted at least with respect to neighbouring not-selected sample sites in a manner which can be perceived by the human eye,(e) a sample is manually deposited on the highlighted sample site, the performed manual deposition is confirmed and/or automatically detected by sensors, and(f) if the amount contains further unprocessed sample sites or groups of sample sites, steps (d) and (e) are repeated with the subsequent sample site of the amount, or the subsequent group of sample sites.
- Method according to claim 12, characterized in that the sample site is selected based on the fact that it is not occupied.
- Method for manual preparation of a sample on a sample support for ionization using matrix-assisted laser desorption, wherein the sample is provided with an identification tag, in which a sample site, which is also provided with an identification tag, is selected and highlighted in accordance with a method according to claim 12 or 13, the sample is disposed on the selected sample site, and the identification tags are allocated to one another and stored.
- Method according to claim 14, characterized in that the identification tag of the sample is derived from a tag of the sample container from which the sample is taken.
Priority Applications (5)
Application Number | Priority Date | Filing Date | Title |
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ES12170042.1T ES2683773T3 (en) | 2012-05-30 | 2012-05-30 | Procedure and imaging device to assist in manual sample preparation-MALDI |
EP12170042.1A EP2669011B1 (en) | 2012-05-30 | 2012-05-30 | Image projection method and device for supporting manual MALDI sample preparation |
US13/625,275 US9480986B2 (en) | 2012-05-30 | 2012-09-24 | Image projection method and apparatus for supporting manual MALDI sample preparation |
CN2013202489189U CN203367220U (en) | 2012-05-30 | 2013-05-09 | Precipitation auxiliary device for assisting in manually preparing MALDI sample |
US15/202,068 US10413906B2 (en) | 2012-05-30 | 2016-07-05 | Image projection method and apparatus for supporting manual MALDI sample preparation |
Applications Claiming Priority (1)
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EP12170042.1A EP2669011B1 (en) | 2012-05-30 | 2012-05-30 | Image projection method and device for supporting manual MALDI sample preparation |
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EP2669011A1 EP2669011A1 (en) | 2013-12-04 |
EP2669011B1 true EP2669011B1 (en) | 2018-05-16 |
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EP12170042.1A Active EP2669011B1 (en) | 2012-05-30 | 2012-05-30 | Image projection method and device for supporting manual MALDI sample preparation |
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US (2) | US9480986B2 (en) |
EP (1) | EP2669011B1 (en) |
CN (1) | CN203367220U (en) |
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DE102010052976A1 (en) * | 2010-11-30 | 2012-05-31 | Bruker Daltonik Gmbh | Support for the manual preparation of samples on a sample carrier for ionization with matrix-assisted laser desorption |
US20160205360A1 (en) * | 2014-12-04 | 2016-07-14 | Stephen Allen | Systems and methods for facilitating placement of labware components |
EP3141909B1 (en) * | 2015-09-08 | 2021-11-10 | Roche Diagnostics GmbH | Laboratory analyzer for manually handling a plurality of reagents and method for operating a laboratory analyzer for manually handling a plurality of reagents |
EP3403725A1 (en) * | 2017-05-15 | 2018-11-21 | Eppendorf AG | Pipetting assistance system |
FR3106206A1 (en) * | 2020-01-14 | 2021-07-16 | bioMérieux | Method for determining the integrity of a deposit of a complex based on a biological sample and a system for carrying out said method. |
JP6917496B1 (en) * | 2020-03-12 | 2021-08-11 | 株式会社アイオイ・システム | Dispensing support system |
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SE448031B (en) | 1985-06-18 | 1987-01-12 | Scomas Ab | PROCEDURE AND APPARATUS FOR INDICATING THE DETECTION OF PIPETTE POSITIONS AT A TEST PLATE |
FR2649511A1 (en) | 1989-07-06 | 1991-01-11 | Architect | Device for processing microtitration plates |
US6804410B2 (en) | 2001-04-17 | 2004-10-12 | Large Scale Proteomics Corporation | System for optimizing alignment of laser beam with selected points on samples in MALDI mass spectrometer |
US7170605B2 (en) | 2003-08-25 | 2007-01-30 | Evan Francis Cromwell | Active sensor and method for optical illumination and detection |
US7167774B2 (en) * | 2003-11-07 | 2007-01-23 | Ping Du | Computer-guided sample handling |
DE102004020885B4 (en) | 2004-04-26 | 2011-03-10 | BIOMéRIEUX, INC. | Method and device for receiving cell material and storage of the same |
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DE202005017946U1 (en) | 2005-11-17 | 2006-01-12 | Battke, Florian, Dr. | Unit for guiding manual charging from a multiple pipette to a laboratory translucent matrix titer plate, comprises a programmed array of light emitting diode's, visible through the bottom of the plate |
EP1966614A1 (en) | 2005-12-21 | 2008-09-10 | Tecan Trading AG | Method and device for checking whether a liquid transfer has been successful |
WO2007121324A1 (en) | 2006-04-12 | 2007-10-25 | Sage Science, Inc. | Apparatus for guiding sample and reagent manipulations and receptacles for holding same |
DE202007018535U1 (en) | 2007-10-04 | 2008-12-24 | Steinbauer Electronics Gmbh | pipetting |
DE102010052975A1 (en) | 2010-11-30 | 2012-05-31 | Bruker Daltonik Gmbh | Method and specimen support for assisting the manual preparation of samples for ionization with matrix-assisted laser desorption |
DE102010052976A1 (en) | 2010-11-30 | 2012-05-31 | Bruker Daltonik Gmbh | Support for the manual preparation of samples on a sample carrier for ionization with matrix-assisted laser desorption |
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US9480986B2 (en) | 2016-11-01 |
US20130323406A1 (en) | 2013-12-05 |
ES2683773T3 (en) | 2018-09-27 |
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