EP2631832A3 - System und Verfahren zur Verarbeitung einer Referenzsequenz zur Analyse einer Genomsequenz - Google Patents

System und Verfahren zur Verarbeitung einer Referenzsequenz zur Analyse einer Genomsequenz Download PDF

Info

Publication number
EP2631832A3
EP2631832A3 EP12187722.9A EP12187722A EP2631832A3 EP 2631832 A3 EP2631832 A3 EP 2631832A3 EP 12187722 A EP12187722 A EP 12187722A EP 2631832 A3 EP2631832 A3 EP 2631832A3
Authority
EP
European Patent Office
Prior art keywords
seed
reference sequence
sequence
processing reference
processing
Prior art date
Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
Withdrawn
Application number
EP12187722.9A
Other languages
English (en)
French (fr)
Other versions
EP2631832A2 (de
Inventor
Min-Seo Park
Pan-Gyu Kim
Ho-Sang Jeon
Current Assignee (The listed assignees may be inaccurate. Google has not performed a legal analysis and makes no representation or warranty as to the accuracy of the list.)
Samsung SDS Co Ltd
Original Assignee
Samsung SDS Co Ltd
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Application filed by Samsung SDS Co Ltd filed Critical Samsung SDS Co Ltd
Publication of EP2631832A2 publication Critical patent/EP2631832A2/de
Publication of EP2631832A3 publication Critical patent/EP2631832A3/de
Withdrawn legal-status Critical Current

Links

Classifications

    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B30/00—ICT specially adapted for sequence analysis involving nucleotides or amino acids
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B50/00—ICT programming tools or database systems specially adapted for bioinformatics
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6869—Methods for sequencing
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B30/00—ICT specially adapted for sequence analysis involving nucleotides or amino acids
    • G16B30/10—Sequence alignment; Homology search
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B30/00—ICT specially adapted for sequence analysis involving nucleotides or amino acids
    • G16B30/20—Sequence assembly

Landscapes

  • Life Sciences & Earth Sciences (AREA)
  • Physics & Mathematics (AREA)
  • Health & Medical Sciences (AREA)
  • Engineering & Computer Science (AREA)
  • Biotechnology (AREA)
  • Chemical & Material Sciences (AREA)
  • Biophysics (AREA)
  • General Health & Medical Sciences (AREA)
  • Bioinformatics & Cheminformatics (AREA)
  • Spectroscopy & Molecular Physics (AREA)
  • Evolutionary Biology (AREA)
  • Proteomics, Peptides & Aminoacids (AREA)
  • Medical Informatics (AREA)
  • Theoretical Computer Science (AREA)
  • Bioinformatics & Computational Biology (AREA)
  • Analytical Chemistry (AREA)
  • Organic Chemistry (AREA)
  • Bioethics (AREA)
  • Databases & Information Systems (AREA)
  • Zoology (AREA)
  • Wood Science & Technology (AREA)
  • Molecular Biology (AREA)
  • Microbiology (AREA)
  • Immunology (AREA)
  • Biochemistry (AREA)
  • General Engineering & Computer Science (AREA)
  • Genetics & Genomics (AREA)
  • Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
  • Apparatus Associated With Microorganisms And Enzymes (AREA)
  • Investigating Or Analysing Biological Materials (AREA)
EP12187722.9A 2012-02-24 2012-10-09 System und Verfahren zur Verarbeitung einer Referenzsequenz zur Analyse einer Genomsequenz Withdrawn EP2631832A3 (de)

Applications Claiming Priority (1)

Application Number Priority Date Filing Date Title
KR1020120019090A KR101372947B1 (ko) 2012-02-24 2012-02-24 염기 서열 분석을 위한 참조 서열 처리 시스템 및 방법

Publications (2)

Publication Number Publication Date
EP2631832A2 EP2631832A2 (de) 2013-08-28
EP2631832A3 true EP2631832A3 (de) 2014-05-21

Family

ID=47559050

Family Applications (1)

Application Number Title Priority Date Filing Date
EP12187722.9A Withdrawn EP2631832A3 (de) 2012-02-24 2012-10-09 System und Verfahren zur Verarbeitung einer Referenzsequenz zur Analyse einer Genomsequenz

Country Status (5)

Country Link
US (1) US9323889B2 (de)
EP (1) EP2631832A3 (de)
JP (1) JP2013172709A (de)
KR (1) KR101372947B1 (de)
CN (1) CN103294932A (de)

Families Citing this family (5)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
KR101394339B1 (ko) 2012-03-06 2014-05-13 삼성에스디에스 주식회사 시드의 길이를 고려한 염기 서열 처리 시스템 및 방법
KR101538852B1 (ko) * 2013-10-31 2015-07-22 삼성에스디에스 주식회사 정확도를 고려한 염기 서열 정렬 장치 및 방법
EP3663890B1 (de) * 2017-08-02 2024-04-10 GeneMind Biosciences Company Limited Ausrichtverfahren, -vorrichtung und -system
KR102377810B1 (ko) 2020-03-11 2022-03-23 한국전자통신연구원 유전체 서열 정렬 방법 및 그 장치
CN115831233B (zh) * 2023-02-07 2023-05-16 杭州联川基因诊断技术有限公司 一种基于mTag的靶向测序数据预处理的方法、设备和介质

Family Cites Families (4)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
AU6387000A (en) * 1999-07-29 2001-02-19 Genzyme Corporation Serial analysis of genetic alterations
US20030165495A1 (en) * 2003-04-01 2003-09-04 Carulli John P. Nucleic acids and polypeptides
US20060091023A1 (en) * 2004-10-28 2006-05-04 Ahsan Bukhari Assessing micro-via formation PCB substrate manufacturing process
CN102329895A (zh) * 2011-10-14 2012-01-25 武汉百泰基因工程有限公司 乙型肝炎前c区和bcp区基因突变检测试剂盒、检测方法、引物及其探针

Non-Patent Citations (3)

* Cited by examiner, † Cited by third party
Title
"Current Protocols in Bioinformatics", 1 December 2010, JOHN WILEY & SONS, INC., Hoboken, NJ, USA, ISBN: 978-0-47-125095-1, article BEN LANGMEAD: "Aligning Short Sequencing Reads with Bowtie", XP055110993, DOI: 10.1002/0471250953.bi1107s32 *
CHRISTIAM CAMACHO ET AL: "BLAST+: architecture and applications", BMC BIOINFORMATICS, vol. 10, no. 1, 1 January 2009 (2009-01-01), pages 421, XP055111342, ISSN: 1471-2105, DOI: 10.1186/1471-2105-10-421 *
ROBERT SCHMIEDER ET AL: "Fast Identification and Removal of Sequence Contamination from Genomic and Metagenomic Datasets", PLOS ONE, vol. 6, no. 3, 1 March 2011 (2011-03-01), pages e17288, XP055110040, ISSN: 1932-6203, DOI: 10.1371/journal.pone.0017288 *

Also Published As

Publication number Publication date
KR101372947B1 (ko) 2014-03-13
JP2013172709A (ja) 2013-09-05
CN103294932A (zh) 2013-09-11
US9323889B2 (en) 2016-04-26
EP2631832A2 (de) 2013-08-28
US20130226467A1 (en) 2013-08-29
KR20130097440A (ko) 2013-09-03

Similar Documents

Publication Publication Date Title
EP2703923A3 (de) Wartungshilfssystem, Wartungshilfsvorrichtung und Wartungshilfsverfahren
EP2506188A3 (de) Verarbeitungsvorrichtung von biometrischer Information, Verarbeitungsverfahren von biometrischer Information und computerlesbares Speichermedium zum Speichern von biometrischer Information
EP2958049A3 (de) Verfahren und vorrichtung zur extraktion von merkmalsregionen aus punktwolken
WO2015102919A3 (en) Modular image analysis system and method
EP2565825A3 (de) Planungsverwaltungsverfahren und Vorrichtung mit optischem Zeichenlesegerät
EP2562688A3 (de) Verfahren zum Trennen von Objekten in eine dreidimensionale Punktwolke
EP2315158A3 (de) Informationsverarbeitungsvorrichtung, Informationsverarbeitungsverfahren und Programm
EP2927842A3 (de) Automatische bildauswahlvorrichtung und verfahren
EP2750079A3 (de) Verarbeitungs- und Erkennungsverfahren dreidimensionaler Daten
WO2013003005A3 (en) Virtual machine image analysis
WO2018048754A8 (en) Systems and methods for extracting a sample from an ingestible device
WO2013009709A3 (en) Systems and methods for estimating extracorporeal blood volume and for counting surgical samples
EP2474898A3 (de) Informationsverarbeitungsvorrichtung, Informationsverarbeitungsverfahren und Informationsverarbeitungsprogramm
EP2466541A3 (de) Bildverarbeitungsvorrichtung, Bildverarbeitungsverfahren und Bildverarbeitungsprogramm
EP2797032A3 (de) Verfahren und System mit zwei parallelen optischen Zeichenerkennungsprozessen
EP2631832A3 (de) System und Verfahren zur Verarbeitung einer Referenzsequenz zur Analyse einer Genomsequenz
EP2816121A3 (de) Verfahren zur Gewinnung von Informationen über hepatozelluläres Karzinom und Marker und Kit zur Gewinnung von Informationen über hepatozelluläres Karzinom
EP2624123A3 (de) Informationsverarbeitungssystem, Informationsverarbeitungsvorrichtung und Authentifizierungsverfahren
EP2744153A3 (de) System und Verfahren zur Steuerung von Umgebungsvorrichtungen, auf Grundlage der Topologie
EP2639604A3 (de) Verfahren und System zur Präsentation eines Druckbereichs
EP4253937A3 (de) Verfahren zur zelllevetation und -überwachung
EP2892051A3 (de) Vorrichtung und Verfahren zur Strukturierung von Inhalten einer Sitzung
IN2014DN07533A (de)
EP2919040A3 (de) Verfahren zur synchronisation eines datenerfassungssystems
EP4129061A3 (de) Systeme, vorrichtungen und verfahren zur analyse der dynamik von blutzellen

Legal Events

Date Code Title Description
PUAI Public reference made under article 153(3) epc to a published international application that has entered the european phase

Free format text: ORIGINAL CODE: 0009012

17P Request for examination filed

Effective date: 20121009

AK Designated contracting states

Kind code of ref document: A2

Designated state(s): AL AT BE BG CH CY CZ DE DK EE ES FI FR GB GR HR HU IE IS IT LI LT LU LV MC MK MT NL NO PL PT RO RS SE SI SK SM TR

AX Request for extension of the european patent

Extension state: BA ME

PUAL Search report despatched

Free format text: ORIGINAL CODE: 0009013

AK Designated contracting states

Kind code of ref document: A3

Designated state(s): AL AT BE BG CH CY CZ DE DK EE ES FI FR GB GR HR HU IE IS IT LI LT LU LV MC MK MT NL NO PL PT RO RS SE SI SK SM TR

AX Request for extension of the european patent

Extension state: BA ME

RIC1 Information provided on ipc code assigned before grant

Ipc: G06F 19/28 20110101ALN20140411BHEP

Ipc: G06F 19/22 20110101AFI20140411BHEP

17Q First examination report despatched

Effective date: 20151125

STAA Information on the status of an ep patent application or granted ep patent

Free format text: STATUS: EXAMINATION IS IN PROGRESS

STAA Information on the status of an ep patent application or granted ep patent

Free format text: STATUS: THE APPLICATION IS DEEMED TO BE WITHDRAWN

18D Application deemed to be withdrawn

Effective date: 20190501