Classifications

• • C—CHEMISTRY; METALLURGY
  • C08—ORGANIC MACROMOLECULAR COMPOUNDS; THEIR PREPARATION OR CHEMICAL WORKING-UP; COMPOSITIONS BASED THEREON
  • C08G—MACROMOLECULAR COMPOUNDS OBTAINED OTHERWISE THAN BY REACTIONS ONLY INVOLVING UNSATURATED CARBON-TO-CARBON BONDS
  • C08G65/00—Macromolecular compounds obtained by reactions forming an ether link in the main chain of the macromolecule
  • C08G65/02—Macromolecular compounds obtained by reactions forming an ether link in the main chain of the macromolecule from cyclic ethers by opening of the heterocyclic ring
  • C08G65/32—Polymers modified by chemical after-treatment
  • C08G65/329—Polymers modified by chemical after-treatment with organic compounds
  • C08G65/333—Polymers modified by chemical after-treatment with organic compounds containing nitrogen
• • C—CHEMISTRY; METALLURGY
  • C08—ORGANIC MACROMOLECULAR COMPOUNDS; THEIR PREPARATION OR CHEMICAL WORKING-UP; COMPOSITIONS BASED THEREON
  • C08G—MACROMOLECULAR COMPOUNDS OBTAINED OTHERWISE THAN BY REACTIONS ONLY INVOLVING UNSATURATED CARBON-TO-CARBON BONDS
  • C08G69/00—Macromolecular compounds obtained by reactions forming a carboxylic amide link in the main chain of the macromolecule
  • C08G69/02—Polyamides derived from amino-carboxylic acids or from polyamines and polycarboxylic acids
• • C—CHEMISTRY; METALLURGY
  • C08—ORGANIC MACROMOLECULAR COMPOUNDS; THEIR PREPARATION OR CHEMICAL WORKING-UP; COMPOSITIONS BASED THEREON
  • C08G—MACROMOLECULAR COMPOUNDS OBTAINED OTHERWISE THAN BY REACTIONS ONLY INVOLVING UNSATURATED CARBON-TO-CARBON BONDS
  • C08G69/00—Macromolecular compounds obtained by reactions forming a carboxylic amide link in the main chain of the macromolecule
  • C08G69/02—Polyamides derived from amino-carboxylic acids or from polyamines and polycarboxylic acids
  • C08G69/08—Polyamides derived from amino-carboxylic acids or from polyamines and polycarboxylic acids derived from amino-carboxylic acids
• • C—CHEMISTRY; METALLURGY
  • C08—ORGANIC MACROMOLECULAR COMPOUNDS; THEIR PREPARATION OR CHEMICAL WORKING-UP; COMPOSITIONS BASED THEREON
  • C08G—MACROMOLECULAR COMPOUNDS OBTAINED OTHERWISE THAN BY REACTIONS ONLY INVOLVING UNSATURATED CARBON-TO-CARBON BONDS
  • C08G69/00—Macromolecular compounds obtained by reactions forming a carboxylic amide link in the main chain of the macromolecule
  • C08G69/02—Polyamides derived from amino-carboxylic acids or from polyamines and polycarboxylic acids
  • C08G69/08—Polyamides derived from amino-carboxylic acids or from polyamines and polycarboxylic acids derived from amino-carboxylic acids
  • C08G69/14—Lactams
• • C—CHEMISTRY; METALLURGY
  • C08—ORGANIC MACROMOLECULAR COMPOUNDS; THEIR PREPARATION OR CHEMICAL WORKING-UP; COMPOSITIONS BASED THEREON
  • C08G—MACROMOLECULAR COMPOUNDS OBTAINED OTHERWISE THAN BY REACTIONS ONLY INVOLVING UNSATURATED CARBON-TO-CARBON BONDS
  • C08G73/00—Macromolecular compounds obtained by reactions forming a linkage containing nitrogen with or without oxygen or carbon in the main chain of the macromolecule, not provided for in groups C08G12/00 - C08G71/00
  • C08G73/02—Polyamines
  • C08G73/028—Polyamidoamines

Definitions

• the present invention relates to the field of polymer chemistry and more particularly to homopolymers and block copolymers, uses thereof, and intermediates thereto.
• Homopolymers and block copolymers having a poly(amino acid) portion are of great synthetic interest.
• the poly(amino acid) portion of such polymers is typically prepared by the ring-opening polymerization of an amino acid-N-carboxy-anhydride ( ⁇ CA).
• ⁇ CA amino acid-N-carboxy-anhydride
• methods for preparing the poly(amino acid) block that employ free amines as initiators of the ⁇ CA polymerization afford homopolymers or block copolymers with a wide range of polydispersity indices (PDIs) that tend to be quite high.
• PDIs polydispersity indices
• Schlaad reported PDI values of 1.12-1.60 by initiating polymerization with amino- terminated polystyrene.
• Poly(amino acids) synthesized using high vacuum techniques are synthetically challenging to prepare, employ handmade reaction vessels, and require long time periods for reagent purification and complete polymerization to be achieved. Due to these factors, only a few grams of poly(amino acid) can be prepared in a single polymerization reaction.
• homopolymers or block copolymers that comprise a poly(amino acid) portion are typically designed for biological applications, the use of organometallic initiators and catalysts is undesirable.
• each of the methods described above relates to initiating the ring opening polymerization (ROP) of NCAs using a synthetic polymer having a terminal amine group
• ROP ring opening polymerization
• Aliferis and coworkers reported the ROP of NCAs using the primary amines ⁇ -hexylamine and 1,6-diaminohexane. See Aliferis, et al., "Living Polypeptides", Biomacromolecules, 2004, 5, 1653-1656.
• the method described by Aliferis involved highly stringent vacuum techniques in order to control the amine-initiated polymerization of NCAs.
• the present invention provides methods for the synthesis of homopolymers or block copolymers containing a non-polymeric core portion and one or more poly(amino acid) blocks.
• the poly(amino acid) portions of these homopolymers or block copolymers are prepared by controlled ring-opening polymerization of cyclic monomers such as N- carboxy anhydrides (NCAs), lactams, and cyclic imides, wherein the polymerization is initiated by a non-polymeric amine salt.
• cyclic monomers such as N- carboxy anhydrides (NCAs), lactams, and cyclic imides
• Such amine salt initiators may be prepared by protonation of small molecule amines.
• the amine salt reduces or eliminates many side reactions that are commonly observed with traditional polymerization of these reactive monomers. This leads to homopolymers or block copolymers with narrow distributions of block lengths and molecular weights. It has been surprisingly found that the sequential addition of monomers provides multi-block copolymers having desirable low polydispersity. [0009] The sequential addition of cyclic monomers to a "living" polymer chain end (i.e. a terminal amine salt) affords multi-block copolymers having a variety of poly(amino acid) block types.
• one aspect of the present invention provides a method for preparing a multi-block copolymer comprising a non-polymeric core portion and one or more different poly(amino acid) blocks, wherein said method comprises the step of sequentially polymerizing one or more different cyclic amino acid monomers onto a non- polymeric amine salt wherein said polymerization is initiated by said amine salt.
• the term “sequential polymerization”, and variations thereof, refers to the method wherein, after a first monomer (e.g. NCA, lactam, or imide) is incorporated into the polymer, thus forming an amino acid "block", a second monomer (e.g. NCA, lactam, or imide) is added to the reaction to form a second amino acid block, which process may be continued in a similar fashion to introduce additional amino acid blocks into the resulting multi-block copolymers.
• the term “block”, as used herein, includes those formed from a random mixture of two amino acids. For example, such "blocks" may comprise a mixture of two or more hydrophobic or two or more hydrophilic monomers.
• non-polymeric core portion refers to the non-polymeric amine salt that initiates polymerization of the first monomer and thus becomes incorporated into the product obtained therefrom.
• butylamine hydrochloride is used as the non-polymeric amine salt for initiating polymerization of the first monomer, it will be appreciated that the butyl moiety will become the non-polymeric core resulting from that polymerization.
• homopolymer refers to a polymer comprising a single poly(amino acid) portion.
• block copolymer refers to a polymer comprising at least two poly(amino acid) portions.
• multi-block copolymer refers to a polymer comprising two or more differing poly(amino acid) portions. These are also referred to as diblock copolymers (e.g., having two differing poly(amino acid) portions), triblock copolymers (e.g., having three differing poly(amino acid) portions), etc.
• Such block copolymers and copolymers include those having the format X-W-X, X-W-X', W-X-X', W-X-X'-X", X'-X- W-X-X', X'-X-W-X"-X" ⁇ or W-X-X'-X, wherein W is the non-polymeric core portion and X, X', X" and X'" are differing poly(amino acid) portions.
• the non-polymeric core portion is used as the center block, which allows the growth of multiple blocks symmetrically from center, examples of which have the format X-W-X and X'-X- W-X-X'.
• synthetic polymer refers to a polymer that is not a poly(amino acid).
• synthetic polymers are well known in the art and include polystyrene, polyalkylene oxides, such as poly(ethylene oxide) (also referred to as polyethylene glycol or PEG), polyesters (polycaprolactone, polylactic acid, etc.), polyphosphazenes, poly(2-hydroxylethyl acrylate), poly(2-hydroxyethyl methacrylate), poly(ethyleneimine), poly(N-isopropyl acrylamide), Duncan's Polymers, and derivatives thereof.
• polystyrene polyalkylene oxides
• poly(ethylene oxide) also referred to as polyethylene glycol or PEG
• polyesters polycaprolactone, polylactic acid, etc.
• polyphosphazenes poly(2-hydroxylethyl acrylate), poly(2-hydroxyethyl methacrylate), poly(ethyleneimine), poly(N-isopropyl acrylamide), Duncan'
• poly(amino acid) refers to a covalently linked amino acid chain wherein each monomer is an amino acid unit.
• amino acid units include natural and unnatural amino acids.
• each amino acid unit is in the L-conf ⁇ guration.
• Such poly(amino acids) include those having suitable protecting groups.
• amino acid monomers may have hydroxyl or amino moieties, which are optionally protected by a suitable hydroxyl protecting group or a suitable amine protecting group, as appropriate.
• suitable hydroxyl protecting groups and suitable amine protecting groups are described in more detail herein, infra.
• an amino acid block comprises one or more monomers or a set of two or more monomers.
• an amino acid block comprises one or more monomers such that the overall block is hydrophilic. In other embodiments, an amino acid block comprises one or more monomers such that the overall block is hydrophobic. In still other embodiments, amino acid blocks of the present invention include random amino acid blocks, i.e., blocks comprising a mixture of amino acid residues.
• natural amino acid side-chain group refers to the side-chain group of any of the 20 amino acids naturally occuring in proteins.
• natural amino acids include the nonpolar, or hydrophobic amino acids, glycine, alanine, valine, leucine isoleucine, methionine, phenylalanine, tryptophan, and proline. Cysteine is sometimes classified as nonpolar or hydrophobic and other times as polar.
• Natural amino acids also include polar, or hydrophilic amino acids, such as tyrosine, serine, threonine, aspartic acid (also known as aspartate, when charged), glutamic acid (also known as glutamate, when charged), asparagine, and glutamine.
• Certain polar, or hydrophilic, amino acids have charged side-chains. Such charged amino acids include lysine, arginine, and histidine.
• protection of a polar or hydrophilic amino acid side-chain can render that amino acid nonpolar.
• a suitably protected tyrosine hydroxyl group can render that tyroine nonpolar and hydrophobic by virtue of protecting the hydroxyl group.
• unnatural amino acid side-chain group refers to amino acids not included in the list of 20 amino acids naturally occuring in proteins, as described above. Such amino acids include the D-isomer of any of the 20 naturally occuring amino acids. Unnatural amino acids also include homoserine, ornithine, and thyroxine. Other unnatural amino acids side-chains are well know to one of ordinary skill in the art and include unnatural aliphatic side chains. Other unnatural amino acids include modified amino acids, including those that are N-alkylated, cyclized, phosphorylated, acetylated, amidated, labelled, and the like.
• living polymer chain-end refers to the terminus resulting from a polymerization reaction which maintains the ability to react further with additional monomer or with a polymerization terminator.
• terminal refers to attaching a terminal group to a polymer chain-end by the reaction of a living polymer with an appropriate compound.
• terminal may refer to attaching a terminal group to an amine or hydroxyl end, or derivatives thereof, of the polymer chain.
• polymerization terminator is used interchangeably with the term “polymerization terminating agent” and refers to a compound that reacts with a living polymer chain-end to afford a polymer with a terminal group.
• polymerization terminator may refer to a compound that reacts with an amine or hydroxyl end, or derivative thereof, of the polymer chain, to afford a polymer with a terminal group.
• polymerization initiator refers to a compound, or amine and/or amine salt thereof, which reacts with the desired monomer in a manner which results in polymerization of that monomer.
• the polymerization initiator is the amine salt described herein.
• aliphatic or "aliphatic group”, as used herein, denotes a hydrocarbon moiety that may be straight-chain (i.e., unbranched), branched, or cyclic
• aliphatic groups may be completely saturated or may contain one or more units of unsaturation, but which is not aromatic.
• aliphatic groups contain 1-20 carbon atoms. In some embodiments, aliphatic groups contain 1-10 carbon atoms. In other embodiments, aliphatic groups contain 1-8 carbon atoms. In still other embodiments, aliphatic groups contain 1-6 carbon atoms, and in yet other embodiments aliphatic groups contain 1-4 carbon atoms.
• Suitable aliphatic groups include, but are not limited to, linear or branched, alkyl, alkenyl, and alkynyl groups, and hybrids thereof such as (cycloalkyl)alkyl, (cycloalkenyl)alkyl or
• aryl used alone or as part of a larger moiety as in “aralkyl”, “aralkoxy”, or “aryloxyalkyl”, refers to monocyclic, bicyclic, and tricyclic ring systems having a total of five to fourteen ring members, wherein at least one ring in the system is aromatic and wherein each ring in the system contains three to seven ring members.
• aryl may be used interchangeably with the term “aryl ring”.
• compounds of the invention may contain "optionally substituted" moieties.
• substituted means that one or more hydrogens of the designated moiety are replaced with a suitable substituent.
• an “optionally substituted” group may have a suitable substituent at each substitutable position of the group, and when more than one position in any given structure may be substituted with more than one substituent selected from a specified group, the substituent may be either the same or different at every position.
• Combinations of substituents envisioned by this invention are preferably those that result in the formation of stable or chemically feasible compounds.
• stable refers to compounds that are not substantially altered when subjected to conditions to allow for their production, detection, and, in certain embodiments, their recovery, purification, and use for one or more of the purposes disclosed herein.
• each R o may be substituted as defined below and is independently hydrogen, C 1-6 aliphatic, -CH 2 Ph, -0(CH 2 )o_iPh, or a 5-6-membered saturated, partially unsaturated, or aryl ring having 0
• Suitable monovalent substituents on R o are independently halogen, -(CH 2 )o- 2 R # , -(haloR*), -(CH 2 ) 0 _ 2 OH, -(CH 2 ) 0 _ 2 OR*, -(CH 2 )o- 2 CH(OR # ) 2 ; -O(haloR # ), -CN, -N 3 , -(CH 2 )o_ 2 C(0)R # , -(CH 2 )o_ 2 C(0)OH, -(CH 2 )o- 2 C(0)OR # , -(CH 2 ) 0- 2 SR # , -(CH 2 )O -2 SH, -(CH 2 V 2 NH 2 , -(CH 2 ) 0-2 NHR # , -(CH 2 ) 0 - 2 NR* 2
• Suitable divalent substituents that are bound to vicinal substitutable carbons of an "optionally substituted” group include: -O(CR * 2 ) 2 _ 3 O-, wherein each independent occurrence of R * is selected from hydrogen, C)_6 aliphatic which may be substituted as defined below, or an unsubstituted 5-6-membered saturated, partially unsaturated, or aryl ring having 0-4 heteroatoms independently selected from nitrogen, oxygen, or sulfur.
• a suitable tetravalent substituent that is bound to vicinal substitutable methylene carbons of an "optionally substituted” group is the dicobalt
• hexacarbonyl cluster represented by when depicted with the methylenes which bear it.
• Suitable substituents on the aliphatic group of R* include halogen, -R*, -(haloR*), -OH, -OR', -O(haloR*), -CN, -C(O)OH, -C(O)OR * , -NH 2 , -NHR * , -NR* 2 , or -NO 2 , wherein each R* is unsubstituted or where preceded by "halo" is substituted only with one or more halogens, and is independently Ci_ 4 aliphatic, -CH 2 Ph, -O(CH 2 ) 0 -iPh, or a 5-6-membered saturated, partially unsaturated, or aryl ring having 0-4 heteroatoms independently selected from nitrogen, oxygen, or sulfur.
• Suitable substituents on a substitutable nitrogen of an "optionally substituted" group include -R f , -NR f 2 , -C(O)R f , -C(O)OR 1 , -C(O)C(O)R f , -C(O)CH 2 C(O)R 1 , -S(O) 2 R f , -S(O) 2 NR ⁇ , -C(S)NR f 2 , -C(NH)NR f 2 , or -N(R + )S(O) 2 R 1 ; wherein each R + is independently hydrogen, Ci- 6 aliphatic which may be substituted as defined below, unsubstituted -OPh, or an unsubstituted 5-6-membered saturated, partially unsaturated, or aryl ring having 0-4 heteroatoms independently selected from nitrogen, oxygen, or sulfur, or, notwithstanding the definition above, two independent occurrences of R ⁇ ,
• Suitable substituents on the aliphatic group of R* are independently halogen, -R*, -(haloR*), -OH, -OR*, -O(haloR*), -CN, -C(O)OH, -C(O)OR*, -NH 2 , -NHR*, -NR* 2 , or -NO 2 , wherein each R* is unsubstituted or where preceded by "halo" is substituted only with one or more halogens, and is independently C ⁇ aliphatic, -CH 2 Ph, -0(CH 2 )o_iPh, or a 5-6-membered saturated, partially unsaturated, or aryl ring having 0-4 heteroatoms independently selected from nitrogen, oxygen, or sulfur.
• Protected hydroxyl groups are well known in the art and include those described in detail in Protecting Groups in Organic Synthesis, T. W. Greene and P. G. M. Wuts, 3 rd edition, John Wiley & Sons, 1999, the entirety of which is incorporated herein by reference.
• Examples of suitably protected hydroxyl groups further include, but are not limited to, esters, carbonates, sulfonates allyl ethers, ethers, silyl ethers, alkyl ethers, arylalkyl ethers, and alkoxyalkyl ethers.
• suitable esters include formates, acetates, proprionates, pentanoates, crotonates, and benzoates.
• esters include formate, benzoyl formate, chloroacetate, trifluoroacetate, methoxyacetate, triphenylmethoxyacetate, p-chlorophenoxyacetate, 3-phenylpropionate, 4-oxopentanoate, 4,4-(ethylenedithio)pentanoate, pivaloate (trimethylacetate), crotonate, 4-methoxy-crotonate, benzoate, p-benylbenzoate, 2,4,6-trimethylbenzoate.
• suitable carbonates include 9-fluorenylmethyl, ethyl, 2,2,2-trichloroethyl, 2-(trimethylsilyl)ethyl, 2-(phenylsulfonyl)ethyl, vinyl, allyl, and p-nitrobenzyl carbonate.
• suitable silyl ethers include trimethylsilyl, triethylsilyl, t-butyldimethylsilyl, t-butyldiphenylsilyl, triisopropylsilyl ether, and other trialkylsilyl ethers.
• alkyl ethers examples include methyl, benzyl, p-methoxybenzyl, 3,4-dimethoxybenzyl, trityl, t-butyl, and allyl ether, or derivatives thereof.
• Alkoxyalkyl ethers include acetals such as methoxymethyl, methylthiomethyl, (2-methoxyethoxy)methyl, benzyloxymethyl, beta-(trimethylsilyl)ethoxymethyl, and tetrahydropyran-2-yI ether.
• Suitable arylalkyl ethers include benzyl, p-methoxybenzyl (MPM), 3,4-dimethoxybenzyl, O-nitrobenzyl, p-nitrobenzyl, p-halobenzyl, 2,6-dichlorobenzyl, p-cyanobenzyl, 2- and 4-picolyl ethers.
• Protected amines are well known in the art and include those described in detail in Greene (1999). Suitable mono-protected amines further include, but are not limited to, aralkylamines, carbamates, allyl amines, amides, and the like.
• Suitable mono-protected amino moieties include t-butyloxycarbonylamino (-NHBOC), ethyloxycarbonylamino, methyloxycarbonylamino, trichloroethyloxycarbonylamino, allyloxycarbonylamino (-NHAlloc), benzyloxocarbonylamino (-NHCBZ), allylamino, benzylamino (-NHBn), fluorenylmethylcarbonyl (-NHFmoc), formamido, acetamido, chloroacetamido, dichloroacetamido, trichloroacetamido, phenylacetamido, trifluoroacetamido, benzamido, t-butyldiphenylsilyl, and the like.
• Suitable di-protected amines include amines that are substituted with two substituents independently selected from those described above as mono-protected amines, and further include cyclic imides, such as phthalimide, maleimide, succinimide, and the like. Suitable di-protected amines also include pyrroles and the like, 2,2,5, 5-tetramethyl-[l,2,5]azadisilolidine and the like, and azide.
• Protected aldehydes are well known in the art and include those described in detail in Greene (1999). Suitable protected aldehydes further include, but are not limited to, acyclic acetals, cyclic acetals, hydrazones, imines, and the like. Examples of such groups include dimethyl acetal, diethyl acetal, diisopropyl acetal, dibenzyl acetal, bis(2- nitrobenzyl) acetal, 1,3-dioxanes, 1,3-dioxolanes, semicarbazones, and derivatives thereof.
• Protected carboxylic acids are well known in the art and include those described in detail in Greene (1999).
• Suitable protected carboxylic acids further include, but are not limited to, optionally substituted C 1-6 aliphatic esters, optionally substituted aryl esters, silyl esters, activated esters, amides, hydrazides, and the like.
• ester groups include methyl, ethyl, propyl, isopropyl, butyl, isobutyl, benzyl, and phenyl ester, wherein each group is optionally substituted.
• Additional suitable protected carboxylic acids include oxazolines and ortho esters.
• Protected thiols are well known in the art and include those described in detail in Greene (1999). Suitable protected thiols further include, but are not limited to, disulfides, thioethers, silyl thioethers, thioesters, thiocarbonates, and thiocarbamates, and the like. Examples of such groups include, but are not limited to, alkyl thioethers, benzyl and substituted benzyl thioethers, triphenylmethyl thioethers, and trichloroethoxycarbonyl thioester, to name but a few.
• a "crown ether moiety” is the radical of a crown ether.
• a crown ether is a monocyclic polyether comprised of repeating units of -CH 2 CH 2 O-. Examples of crown ethers include 12-crown-4, 15-crown-5, and 18-crown-6.
• structures depicted herein are also meant to include all isomeric (e.g., enantiomeric, diastereomeric, and geometric (or conformational)) forms of the structure; for example, the R and S configurations for each asymmetric center, Z and E double bond isomers, and Z and E conformational isomers. Therefore, single stereochemical isomers as well as enantiomeric, diastereomeric, and geometric (or conformational) mixtures of the present compounds are within the scope of the invention. Unless otherwise stated, all tautomeric forms of the compounds of the invention are within the scope of the invention.
• structures depicted herein are also meant to include compounds that differ only in the presence of one or more isotopically enriched atoms.
• compounds having the present structures except for the replacement of hydrogen by deuterium or tritium, or the replacement of a carbon by a 13 C- or 14 C-enriched carbon are within the scope of this invention.
• Such compounds are useful, for example, as analytical tools or probes in biological assays and in neutron scattering experiments.
• the term “detectable moiety” is used interchangeably with the term “label” and relates to any moiety capable of being detected (e.g., primary labels and secondary labels).
• a “detectable moiety” or “label” is the radical of a detectable compound.
• "Primary" labels include radioisotope-containing moieties (e.g., moieties that contain 32 P, 33 P, 35 S, or 14 C), mass-tags, and fluorescent labels, and are signal-generating reporter groups which can be detected without further modifications.
• Other primary labels include those useful for positron emission tomography including molecules containing radioisotopes (e.g.
• primary labels are contrast agents for magnetic resonance imaging such as gadolinium, gadolinium chelates, or iron oxide (e.g Fe 3 O 4 and Fe 2 O 3 ) particles.
• semiconducting nanoparticles e.g. cadmium selenide, cadmium sulfide, cadmium telluride
• core-shell semiconducting nanoparticles e.g. cadmium selenide (core) /zinc sulfide (shell), cadmium selenide (core)/zinc selenide (shell)
• Other metal nanoparticles e.g colloidal gold also serve as primary labels.
• “Secondary” labels include moieties such as biotin, or protein antigens, that require the presence of a second compound to produce a detectable signal.
• the second compound may include streptavidin-enzyme conjugates.
• the second compound may include an antibody-enzyme conjugate.
• certain fluorescent groups can act as secondary labels by transferring energy to another compound or group in a process of nonradiative fluorescent resonance energy transfer (FRET), causing the second compound or group to then generate the signal that is detected.
• FRET nonradiative fluorescent resonance energy transfer
• radioisotope-containing moieties are optionally substituted hydrocarbon groups that contain at least one radioisotope. Unless otherwise indicated, radioisotope-containing moieties contain from 1-40 carbon atoms and one radioisotope. In certain embodiments, radioisotope-containing moieties contain from 1-20 carbon atoms and one radioisotope.
• fluorescent label refers to compounds or moieties that absorb light energy at a defined excitation wavelength and emit light energy at a different wavelength.
• fluorescent compounds include, but are not limited to: Alexa Fluor dyes (Alexa Fluor 350, Alexa Fluor 488, Alexa Fluor 532, Alexa Fluor 546, Alexa Fluor 568, Alexa Fluor 594, Alexa Fluor 633, Alexa Fluor 660 and Alexa Fluor 680), AMCA, AMCA-S, BODIPY dyes (BODIPY FL, BODIPY R6G, BODIPY TMR, BODIPY TR, BODIPY 530/550, BODIPY 558/568, BODIPY 564/570, BODIPY 576/589, BODIPY 581/591, BODIPY 630/650, BODIPY 650/665), Carboxyrhodamine 6G, carboxy-X-rhodamine (ROX), Cascade Blue, Cascade Yellow, Coumarin 343, Cyanine dyes (Cy3, Cy5, Cy3.5, Cy5.5), Dansyl, Dapoxyl, Dialkyla
• mass-tag refers to any moiety that is capable of being uniquely detected by virtue of its mass using mass spectrometry (MS) detection techniques.
• mass-tags include electrophore release tags such as N-[3-[4'-[(p- MethoxytetrafluorobenzyOoxyJphenylJ-S-methylglyceronyljisompecotic Acid, 4'-[2,3,5,6- Tetrafluoro-4-(pentafluorophenoxyI)]methyl acetophenone, and their derivatives.
• mass-tags include, but are not limited to, nucleotides, dideoxynucleotides, oligonucleotides of varying length and base composition, oligopeptides, oligosaccharides, and other synthetic polymers of varying length and monomer composition.
• a large , variety of organic molecules, both neutral and charged (biomolecules or synthetic compounds) of an appropriate mass range (100-2000 Daltons) may also be used as mass- tags.
• substrate refers to any material or macromolecular complex to which a functional ized end-group of a homopolymer or block copolymer can be attached.
• substrates include, but are not limited to, glass surfaces, silica surfaces, plastic surfaces, metal surfaces, surfaces containing a metallic or chemical coating, membranes (eg., nylon, polysulfone, silica), micro-beads (eg., latex, polystyrene, or other polymer), porous polymer matrices (eg., polyacrylamide gel, polysaccharide, polymethacrylate), macromolecular complexes (eg., protein, polysaccharide).
• membranes eg., nylon, polysulfone, silica
• micro-beads eg., latex, polystyrene, or other polymer
• porous polymer matrices eg., polyacrylamide gel, polysaccharide, polymethacrylate
• one aspect of the present invention provides a method for preparing a homopolymer or block copolymer comprising a non-polymeric core and one or more different poly(amino acid) blocks, wherein said method comprises the step of sequentially polymerizing one or more different cyclic amino acid monomers onto a non-polymeric amine salt wherein said polymerization is initiated by said amine salt.
• said polymerization occurs by ring-opening polymerization of the cyclic amino acid monomers.
• the cyclic amino acid monomer is an amino acid NCA, lactam, or cyclic imide.
• the non-polymeric core used in the methods of the present invention has an amine salt for initiating the polymerization of a cyclic amino acid monomer.
• Such salts include the acid addition salts of an amino group formed with an inorganic acid such as hydrochloric acid, hydrobromic acid, phosphoric acid, sulfuric acid or perchloric acid.
• such amine salts include the acid addition salts of an amino group formed with an organic acid such as acetic acid, oxalic acid, maleic acid, tartaric acid, citric acid, succinic acid, malonic acid, methanesulfonic acid, phenylsulfonic acid, optionally substituted phenylsulfonic acids, sulfinic acid, phenylsulfinic acid, optionally substituted phenylsulfinic acid, trifluoroacetic acid, triflic acid, benzoic acid, optionally substituted benzoic acids, and the like, or by using other methods used in the art such as ion exchange.
• organic acid such as acetic acid, oxalic acid, maleic acid, tartaric acid, citric acid, succinic acid, malonic acid, methanesulfonic acid, phenylsulfonic acid, optionally substituted phenylsulfonic acids, sulfinic acid, phenylsulfini
• amine salts include, when appropriate, ammonium, and amine cations formed using counterions such as halide, hydroxide, carboxylate, sulfate, phosphate, nitrate, lower alkyl sulfonate and aryl sulfonate.
• Another aspect of the present invention provides a method of preparing a homopolymer or block copolymer comprising one or more different poly(amino acid) blocks and a non-polymeric core moiety R 1 , wherein said method comprises the steps of:
• R 1 is an optionally substituted group selected from a C 1-6 aliphatic group, a 3-7 membered saturated, partially unsaturated, or aryl monocyclic ring having 0-3 heteroatoms independently selected from oxygen, nitrogen, or sulfur, an 8-10 membered saturated, partially unsaturated, or aryl bicyclic ring having 0-5 heteroatoms independently selected from oxygen, nitrogen, or sulfur, a 12-14 membered saturated, partially unsaturated, or aryl tricyclic ring having 0-5 heteroatoms independently selected from oxygen, nitrogen, or sulfur, or an amine-terminal dendritic group; and A is a suitable acid anion,
• the present invention provides a method for preparing a block copolymer comprising two or more different poly(amino acid) blocks and a non- polymeric core moiety R 1 , wherein said method comprises the steps of:
• R 1 is an optionally substituted group selected from a C 1-6 aliphatic group, a 3-7 membered saturated, partially unsaturated, or aryl monocyclic ring having 0-3 heteroatoms independently selected from oxygen, nitrogen, or sulfur, an 8-10 membered saturated, partially unsaturated, or aryl bicyclic ring having 0-5 heteroatoms independently selected from oxygen, nitrogen, or sulfur, a 12-14 membered saturated, partially unsaturated, or aryl tricyclic ring having 0-5 heteroatoms independently selected from oxygen, nitrogen, or sulfur, or an amine-terminal dendritic group; and A is a suitable acid anion,
• the cyclic amino acid monomers include N-carboxy anhydrides (NCAs), lactams, and cyclic imides.
• the cyclic amino acid monomer is an NCA.
• NCAs are well known in the art and are typically prepared by the carbonylation of amino acids by a modification of the Fuchs-Farthing method (Kricheldorf, a-Aminoacid-N-Carboxy-Anhydrides and Related Heterocycles: Syntheses, Properties, Peptide Synthesis, Polymerization, 1987).
• NCAs exhibit reactivity that is well-suited for ring-opening polymerization (ROP).
• ROP ring-opening polymerization
• Primary, secondary, and tertiary amines as well as alcohols, water, and acid are known to initiate the ring opening of the NCA.
• amino acids containing alcohol, amine, and carboxylic acid functionality are typically protected before polymerization.
• protected hydroxyl groups, protected amine groups, and protected carboxylic acids are well known in the art and include those described above and in Greene (1999).
• Suitable hydroxyl protecting groups include, but are not limited to, esters, allyl ethers, ethers, silyl ethers, alkyl ethers, arylalkyl ethers, and alkoxyalkyl ethers.
• esters include formates, acetates, carbonates, and sulfonates.
• Specific examples include formate, benzoyl formate, chloroacetate, trifluoroacetate, methoxyacetate, triphenylmethoxy acetate, p-chlorophenoxyacetate, 3-phenylpropionate, 4-oxopentanoate, 4,4-(ethylenedithio)pentanoate, pivaloate (trimethylacetyl), crotonate, 4- methoxy-crotonate, benzoate, p-benylbenzoate, 2,4,6-trimethylbenzoate, carbonates such as methyl, 9-fluorenylmethyl, ethyl, 2,2,2-trichloroethyl, 2-(trimethylsilyl)ethyl, 2- (phenylsulfonyl)ethyl, vinyl, allyl, and p-nitrobenzyl.
• silyl ethers examples include trimethylsilyl, triethylsilyl, t-butyldimethylsilyl, t-butyldiphenylsilyl, triisopropylsilyl, and other trialkylsilyl ethers.
• Alkyl ethers include methyl, benzyl, p- methoxybenzyl, 3,4-dimethoxybenzyl, trityl, t-butyl, allyl, and allyloxycarbonyl ethers or derivatives.
• Alkoxyalkyl ethers include acetals such as methoxymethyi, methylthiomethyl, (2-methoxyethoxy)methyl, benzyloxymethyl, beta-
• Suitable amino protecting groups include, but are not limited to, aralkylamines, carbamates, cyclic imides, allyl amines, amides, and the like.
• Examples of such groups include t-butyloxycarbonyl (BOC), ethyloxycarbonyl, methyloxycarbonyl, trichloroethyloxycarbonyl, allyloxycarbonyl (Alloc), benzyloxocarbonyl (CBZ), allyl, phthalimide, benzyl (Bn), fluorenylmethylcarbonyl (Fmoc), formyl, acetyl, chloroacetyl, dichloroacetyl, trichloroacetyl, phenylacetyl, trifluoroacetyl, benzoyl, and the like.
• the amino protecting group is phthalimido.
• the amino protecting group is mono- or di-benzyl or mono- or di-allyl. In still other embodiments, the amino protecting group is a tert-butyloxycarbonyl (BOC) group.
• Suitable carboxylate protecting groups include, but are not limited to, substituted Q.6 aliphatic esters, optionally substituted aryl esters, silyl esters, activated esters, amides, hydrazides, and the like. Examples of such ester groups include methyl, ethyl, propyl, isopropyl, butyl, isobutyl, tert-butyl, benzyl, and phenyl wherein each group is optionally substituted.
• both D and L NCA enantiomers can be synthesized and any combination of the two stereoisomers can undergo ring-opening polymerization.
• Advanced Chemtech http://www.advancedchemtech.com
• Bachem www.bachem.com
• amino acid dimers and trimers can form cyclic anhydrides and are capable of ROP in accordance with the present invention.
• the cyclic amino acid monomer is a carboxylate- protected aspartic acid NCA, a hydroxyl-protected tyrosine NCA, or an amino-protected lysine NCA.
• the cyclic amino acid monomer is a t-butyl protected aspartic acid NCA, a benzyl-protected tyrosine NCA, or a BOC-protected lysine NCA.
• a mixture of cyclic amino acid monomers such as a hydroxyl- protected tyrosine NCA and phenylalanine NCA, are polymerized simultaneously to form polymer blocks comprising two different amino acids.
• the cyclic amino acid monomer is a lactam.
• Lactams are another class of monomers that can be polymerized by cationic ROP. (Odian, Principles of Polymerization, Ch. 7) Such lactams suitable for the present invention include the four, five (pyrrolidone), six (piperidone) and seven (caprolactam) member rings depicted below:
• Suitable monovalent substituents on R o are independently halogen, -(CH 2 ) 0 _ 2 R', -(haloR*), -(CH 2 )o- 2 ⁇ H, -(CH 2 ) 0 _ 2 ⁇ R # , -(CH 2 )o_ 2 CH(OR # ) 2 ; -O(haloR # ), -CN, -N 3 , -(CH 2 ) 0 - 2 C(O)R % , -(CH 2 )o- 2 C(0)OH, -(CH 2 ) 0 _ 2 C(O)OR # , -(CH 2 ) O-2 SR*, -(CH 2 )Q -2 SH, -(CH 2 ) 0 _ 2 NH 2 , -(CH 2 ) 0-2 NHR*, -(CH 2 )o_ 2 NR* 2 , -NO 2 , -SiR* 3 ,
• the R 1 group of formula I includes an optionally substituted C 1-I o aliphatic group.
• Such aliphatic groups include straight, branched, saturated, and unsaturated groups.
• the R 1 group of formula I is an optionally substituted straight chain aliphatic group.
• Exemplary substituents on the R 1 group of formula I include -N 3 , -CN, an amino group or salt or protected form thereof, a protected aldehyde group, a protected hydroxy! group, a protected carboxylic acid group, a protected thiol group, an optionally substituted aliphatic group, or a detectable moiety.
• Exemplary compounds of formula I wherein R 1 is an optionally substituted straight chain aliphatic group include:
• the R 1 group of formula I includes an optionally substituted group selected from 3-7 membered saturated, partially unsaturated, or aryl monocyclic ring having 0-3 heteroatoms independently selected from oxygen, nitrogen, or sulfur, an 8-10 membered saturated, partially unsaturated, or aryl bicyclic ring having 0-5 heteroatoms independently selected from oxygen, nitrogen, or sulfur, or a 12-14 membered saturated, partially unsaturated, or aryl tricyclic ring having 0-5 heteroatoms independently selected from oxygen, nitrogen, or sulfur.
• R 1 is an optionally substituted group selected from 5-7 membered saturated, partially unsaturated, or aryl monocyclic ring having 0-2 heteroatoms independently selected from oxygen, nitrogen, or sulfur.
• R 1 is a 9-10 membered saturated, partially unsaturated, or aryl bicyclic ring having 0-3 heteroatoms independently selected from oxygen, nitrogen, or sulfur.
• R ! is a 13-14 membered saturated, partially unsaturated, or aryl tricyclic ring having 0-3 heteroatoms independently selected from oxygen, nitrogen, or sulfur.
• Such cyclic R 1 groups include optionally substituted phenyl, pyridyl, naphthyl, quinolinyl, isoquinolinyl, quinazolinyl, anthracenyl, and the like.
• the R 1 group of formula I is an optionally substituted 5-6 membered saturated, partially unsaturated, or aryl monocyclic ring having 0-3 heteroatoms independently selected from oxygen, nitrogen, or sulfur.
• the R 1 group of formula I is an optionally substituted phenyl group.
• Exemplary substituents on the R 1 groups of formula I include -N 3 , -CN, an amino group, a mono-protected amino group, a di-protected amino group, a protected aldehyde group, a protected hydroxyl group, a protected carboxylic acid group, a protected thiol group, an optionally substituted aliphatic group, or a detectable moiety.
• Exemplary compounds of formula I wherein R 1 is an optionally substituted cyclic group include:
• each R is as defined generally above and in classes and subclasses described above and herein,
• the R 1 group of formula I comprises a fluorescent moiety.
• the R 1 aliphatic group of formula I comprises a group suitable for Click chemistry.
• Click reactions tend to involve high-energy (“spring- loaded”) reagents with well-defined reaction coordinates, giving rise to selective bond- forming events of wide scope. Examples include the nucleophilic trapping of strained-ring electrophiles (epoxide, aziridines, aziridinium ions, episulfonium ions), certain forms of carbonyl reactivity (aldehydes and hydrazines or hydroxylamines, for example), and several types of cycloaddition reactions. The azide-alkyne 1 ,3-dipolar cycloaddition is one such reaction.
• Click chemistry is known in the art and one of ordinary skill in the art would recognize that certain R 1 moieties of the present invention are suitable for Click chemistry.
• Compounds of formula I having R ! moieties, suitable for Click chemistry are useful for conjugating said compounds to biological systems or macromolecules such as proteins, viruses, and cells, to name but a few.
• the Click reaction is known to proceed quickly and selectively under physiological conditions.
• most conjugation reactions are carried out using the primary amine functionality on proteins (e.g. lysine or protein end-group). Because most proteins contain a multitude of lysines and arginines, such conjugation occurs uncontrollably at multiple sites on the protein. This is particularly problematic when lysines or arginines are located around the active site of an enzyme or other biomolecule.
• Multi-block copolymers of the present invention may be of the form X-W-X', W-X-X', W-X-X'-X", X'-X-W-X-X', X'-X-W-X"-X" ⁇ or W-X-X'-X.
• a first cyclic amino acid monomer X may be polymerized onto the amine salt terminal ends of W.
• a second cyclic amino acid monomer X' may then be polymerized onto the resulting amine salts thus forming a multi-block copolymer of the form X'-X-W-X-X', wherein W is a non- polymeric core and X and X' are differing poly(amino acid) chains.
• a first cyclic amino acid monomer X may be polymerized onto the amine salt terminal end of W, following which, the protected amine, at the other terminus, may be deprotected and the corresponding amine salt formed.
• a second cyclic amino acid monomer X' may then be polymerized onto the resulting amine salt thus forming a multi-block copolymer of the form X-W-X', wherein W is a non-polymeric core and X and X' are differing poly(amino acid) chains.
• the other end-group functionality corresponding to a substituent on the R 1 moiety of formula I, can be used to attach targeting groups for cell specific delivery including, but not limited to, detectable moieties, such as fluorescent dyes, covalent attachment to surfaces, and incorporation into hydrogels.
• targeting groups for cell specific delivery including, but not limited to, detectable moieties, such as fluorescent dyes, covalent attachment to surfaces, and incorporation into hydrogels.
• such a substituent on the R 1 moiety of formula I can be bonded to a biomolecule, drug, cell, or other suitable substrate.
• Another aspect of the present invention provides a method for preparing a multi-block copolymer of formula II: II wherein: m is 1-1000; m' is 0-1000;
• R 1 is an optionally substituted group selected from a C 1-6 aliphatic group, a 3-7 membered saturated, partially unsaturated, or aryl monocyclic ring having 0-3 heteroatoms independently selected from oxygen, nitrogen, or sulfur, an 8-10 membered saturated, partially unsaturated, or aryl bicyclic ring having 0-5 heteroatoms independently selected from oxygen, nitrogen, or sulfur, a 12-14 membered saturated, partially unsaturated, or aryl tricyclic ring having 0-5 heteroatoms independently selected from oxygen, nitrogen, or sulfur, or an amine-terminal dendritic group;
• A is a suitable acid anion
• R x and R y are each independently a natural or unnatural amino acid side-chain group, wherein R x and R y are different from each other, wherein said method comprises the steps of; (a) providing a compound of formula I:
• R 1 is an optionally substituted group selected from a C] -6 aliphatic group, a 3-7 membered saturated, partially unsaturated, or aryl monocyclic ring having 0-3 heteroatoms independently selected from oxygen, nitrogen, or sulfur, an 8-10 membered saturated, partially unsaturated, or aryl bicyclic ring having 0-5 heteroatoms independently selected from oxygen, nitrogen, or sulfur, a 12-14 membered saturated, partially unsaturated, or aryl tricyclic ring having 0-5 heteroatoms independently selected from oxygen, nitrogen, or sulfur, or an amine-terminal dendritic group; and A is a suitable acid anion, (b) polymerizing a first cyclic amino acid monomer onto the amine salt terminal end of formula I, wherein said first cyclic amino acid monomer comprises R x ; and
• Another aspect of the present invention provides a compound of formula II:
• R 1 is an optionally substituted group selected from a C ⁇ s aliphatic group, a 3-7 membered saturated, partially unsaturated, or aryl monocyclic ring having 0-3 heteroatoms independently selected from oxygen, nitrogen, or sulfur, an 8-10 membered saturated, partially unsaturated, or aryl bicyclic ring having 0-5 heteroatoms independently selected from oxygen, nitrogen, or sulfur, a 12-14 membered saturated, partially unsaturated, or aryl tricyclic ring having 0-5 heteroatoms independently selected from oxygen, nitrogen, or sulfur, or an amine-terminal dendritic group;
• A is a suitable acid anion
• R x and R y are each independently a natural or unnatural amino acid side-chain group, wherein R x and R y are different from each other, wherein said compound is prepared by a method comprising the steps of: (a) providing a compound of formula I:
• R 1 is an optionally substituted group selected from a C 1-6 aliphatic group, a 3-7 membered saturated, partially unsaturated, or aryl monocyclic ring having 0-3 heteroatoms independently selected from oxygen, nitrogen, or sulfur, an 8-10 membered saturated, partially unsaturated, or aryl bicyclic ring having 0-5 heteroatoms independently selected from oxygen, nitrogen, or sulfur, a 12-14 membered saturated, partially unsaturated, or aryl tricyclic ring having 0-5 heteroatoms independently selected from oxygen, nitrogen, or sulfur, or an amine-terminal dendritic group; and A is a suitable acid anion,
• the present invention provides a compound of formula II:
• R x and R y are each independently a natural or unnatural amino acid side-chain group, wherein R x and R y are different from each other;
• R 1 is an optionally substituted group selected from a Cj. 6 aliphatic group, a 3-7 membered saturated, partially unsaturated, or aryl monocyclic ring having 0-3 heteroatoms independently selected from oxygen, nitrogen, or sulfur, an 8-10 membered saturated, partially unsaturated, or aryl bicyclic ring having 0-5 heteroatoms independently selected from oxygen, nitrogen, or sulfur, a 12-14 membered saturated, partially unsaturated, or aryl tricyclic ring having 0-5 heteroatoms independently selected from oxygen, nitrogen, or sulfur, or an amine-terminal dendritic group; and A is a suitable acid anion.
• the R 1 group of formula II is substituted with -N 3 .
• the R 1 group of formula II is an optionally substituted aliphatic group.
• said R 1 moiety is an optionally substituted alkyl group.
• said R 1 moiety is an optionally substituted alkynyl or alkenyl group.
• R 1 moiety is a substituted aliphatic group
• suitable substituents on R 1 include CN, a mono-protected amino group, a di-protected amino group, a protected aldehyde group, a protected hydroxyl group, a protected carboxylic acid group, a protected thiol group, or a detectable moiety.
• R 1 is an optionally substituted group selected from 5-7 membered saturated, partially unsaturated, or aryl monocyclic ring having 0-2 heteroatoms independently selected from oxygen, nitrogen, or sulfur.
• R 1 is a 9-10 membered saturated, partially unsaturated, or aryl bicyclic ring having 0-3 heteroatoms independently selected from oxygen, nitrogen, or sulfur.
• R 1 is a 13-14 membered saturated, partially unsaturated, or aryl tricyclic ring having 0-3 heteroatoms independently selected from oxygen, nitrogen, or sulfur.
• Such cyclic R 1 groups, as defined herein, include optionally substituted phenyl, naphthyl, and anthracenyl groups.
• the R 1 group of formula II is an optionally substituted 5-6 membered saturated, partially unsaturated, or aryl monocyclic ring having 0-3 heteroatoms independently selected from oxygen, nitrogen, or sulfur.
• the R 1 group of formula II is an optionally substituted phenyl group.
• Exemplary substituents on the R 1 groups of formula II include -N 3 , -CN, an amino group, a mono-protected amino group, a di-protected amino group, a protected aldehyde group, a protected hydroxyl group, a protected carboxylic acid group, a protected thiol group, an optionally substituted aliphatic group, or a detectable moiety.
• the R 1 group of formula II comprises a fluorescent moiety.
• the R 1 group of formula II is substituted with a protected hydroxyl group.
• the protected hydroxyl of the R 1 moiety is an ester, carbonate, sulfonate, allyl ether, ether, silyl ether, alkyl ether, arylalkyl ether, or alkoxyalkyl ether.
• the ester is a formate, acetate, proprionate, pentanoate, crotonate, or benzoate.
• esters include formate, benzoyl formate, chloroacetate, trifluoroacetate, methoxyacetate, triphenylmethoxyacetate, p-chlorophenoxyacetate, 3-phenylpropionate, 4-oxopentanoate, 4,4-
• ethylenedithiopentanoate pivaloate (trimethylacetate), crotonate, 4-methoxy-crotonate, benzoate, p-benylbenzoate, 2,4,6-trimethyIbenzoate.
• exemplary carbonates include 9-fluorenylmethyl, ethyl, 2,2,2-trichloroethyl, 2-(trimethylsilyl)ethyl,
• silyl ethers include trimethylsilyl, triethylsilyl, t-butyldimethylsilyl, t-butyldiphenylsilyl, triisopropylsilyl ether, and other trialkylsilyl ethers.
• exemplary alkyl ethers include methyl, benzyl, p-methoxybenzyl, 3,4-dimethoxybenzyl, trityl, t-butyl, and allyl ether, or derivatives thereof.
• Exemplary alkoxyalkyl ethers include acetals such as methoxymethyl, methylthiomethyl, (2-methoxyethoxy)methyl, benzyloxymethyl, beta-
• arylalkyl ethers include benzyl, p-methoxybenzyl (MPM), 3,4-dimethoxybenzyl, O-nitrobenzyl, p-nitrobenzyl, p-halobenzyl, 2,6-dichlorobenzyl, p-cyanobenzyl, 2- and 4-picolyl ethers.
• the R 1 group of formula II is substituted with a mono- protected or di-protected amino group.
• R 1 is a mono-protected amine.
• R 1 is a mono-protected amine selected from aralkylamines, carbamates, allyl amines, or amides.
• Examplary mono-protected amino moieties include t-butyloxycarbonylamino, ethyloxycarbonylamino, methyloxycarbonylamino, trichloroethyloxy-carbonylamino, allyloxycarbonylamino, behzyloxocarbonylamino, allylamino, benzylamino, fluorenylmethylcarbonyl, formamido, acetamido, chloroacetamido, dichloroacetamido, trichloroacetamido, phenylacetamido, trifluoroacetamido, benzamido, and t-butyldiphenylsilylamino.
• R 1 is a di-protected amine.
• Exemplary di-protected amines include di-benzylamine, di- allylamine, phthalimide, maleimide, succinimide, pyrrole, 2,2,5, 5-tetramethyl- [l,2,5]azadisilolidine, and azide.
• the R 1 moiety is phthalimido.
• the R 1 moiety is mono- or di-benzylamino or mono- or di- allylamino.
• the R 1 group is 2-dibenzylaminoethoxy. [0082]
• the R 1 group of formula II is substituted with a protected aldehyde group.
• R 1 is an acyclic acetal, a cyclic acetal, a hydrazone, or an imine.
• exemplary R 1 groups include dimethyl acetal, diethyl acetal, diisopropyl acetal, dibenzyl acetal, bis(2-nitrobenzyl) acetal, 1,3-dioxane, 1,3-dioxolane, and semicarbazone.
• R 1 is an acyclic acetal or a cyclic acetal. In other embodiments, R 1 is a dibenzyl acetal.
• the R 1 group of formula II is substituted with a protected carboxylic acid group.
• the protected carboxylic acid moiety of R 1 is an optionally substituted ester selected from CV 6 aliphatic or aryl, or a silyl ester, an activated ester, an amide, or a hydrazide. Examples of such ester groups include methyl, ethyl, propyl, isopropyl, butyl, isobutyl, benzyl, and phenyl ester.
• the protected carboxylic acid moiety of R 1 is an oxazoline or an ortho ester.
• Examples of such protected carboxylic acid moieties include oxazoIin-2-yl and 2-methoxy-[l,3]dioxin-2-yl.
• the R 1 group is oxazolin-2- ylmethoxy or 2-oxazolin-2-yl-l-propoxy.
• the R 1 group of formula II is substituted with a protected thiol group.
• the protected thiol of R 1 is a disulfide, thioether, silyl thioether, thioester, thiocarbonate, or a thiocarbamate.
• protected thiols include triisopropylsilyl thioether, t-butyldimethylsilyl thioether, t- butyl thioether, benzyl thioether, p-methylbenzyl thioether, triphenylmethyl thioether, and p-methoxyphenyldiphenylmethyl thioether.
• R 1 is an optionally substituted thioether selected from alkyl, benzyl, or triphenylmethyl, or trichloroethoxycarbonyl thioester.
• R 1 is -S-S-pyridin-2-yl, -S- SBn, -S-SCH 3 , or -S-S(p-ethynylbenzyl).
• R 1 is -S-S-pyridin-2-yl.
• the R 1 group is 2-triphenylmethylsulfanyl-ethoxy.
• the R 1 group of formula II is substituted with a crown ether moiety. Examplary crown ether moieties include radicals of 12-crown-4, 15-crown- 5, and 18-crown-6.
• the R 1 group of formula II is substituted with a detectable moiety.
• the R 1 group of formula II is substituted with a fluorescent moiety.
• fluorescent moieties are well known in the art and include coumarins, quinolones, benzoisoquinolones, hostasol, and Rhodamine dyes, to name but a few.
• Exemplary fluorescent moieties of the R 1 group include anthracen-9-yl, pyren-4-yl, 9-H-carbazol-9-yl, the carboxylate of rhodamine B, and the carboxylate of coumarin 343.
• the R 1 group of formula II is a fluorescent moiety.
• the R 1 group of formula II is substituted with a group suitable for Click chemistry.
• Click reactions tend to involve high-energy (“spring- loaded”) reagents with well-defined reaction coordinates, that give rise to selective bond- forming events of wide scope. Examples include nucleophilic trapping of strained-ring electrophiles (epoxide, aziridines, aziridinium ions, episulfonium ions), certain carbonyl reactivity (e.g., the reaction between aldehydes and hydrazines or hydroxylamines), and several cycloaddition reactions. The azide-alkyne 1,3-dipolar cycloaddition is one such reaction.
• R 1 substituents of the present invention are suitable for Click chemistry.
• Compounds of formula II having R' substituents suitable for Click chemistry are useful for conjugating said compounds to biological systems or macromolecules such as proteins, viruses, and cells, to name but a few.
• the Click reaction is known to proceed quickly and selectively under physiological conditions.
• most conjugation reactions are carried out using the primary amine functionality on proteins (e.g. lysine or protein end-group). Because most proteins contain a multitude of lysines and arginines, such conjugation occurs uncontrollably at multiple sites on the protein.
• Another embodiment of the present invention provides a method of conjugating the R 1 group of a compound of formula II to a macromolecule via Click chemistry. Yet another embodiment of the present invention provides a macromolecule conjugated to a compound of formula II via the R 1 group.
• the other end-group functionality, corresponding to free amine or salt thereof, group of formula II can be used to attach targeting groups for cell- specific delivery including, but not limited to, detectable moieties, such as fluorescent dyes, covalent attachment to surfaces, and incorporation into hydrogels.
• the R 1 group of formula II is substituted with an azide-containing group.
• the R 1 group of formula II is an alkyne-containing group.
• the R 1 group of formula II has a terminal alkyne moiety.
• the R 1 group of formula II is an alkyne moiety having an electron withdrawing group. Accordingly, in such embodiments, the R 1
• group of formula II is wherein E is an electron withdrawing group and y is 0-6. Such electron withdrawing groups are known to one of ordinary skill in the art. In certain embodiments, E is an ester. In other embodiments, the R 1 group of formula II is
• E is an electron withdrawing group, such as a -C(O)O- group and y is 0-6.
• m' is 0. In other embodiments, m and m' are each independently 1-1000. According to other embodiments, m and m' are each independently 10 to 100. In still other embodiments, m is 1-20, and m' is 10-50. [0092] In certain embodiments, one of R x and R y is a hydrophilic, or crosslinkable, amino acid side-chain group, or suitably protected form thereof, and the other of R x and R y is a hydrophobic, or ionic amino acid side-chain group, or suitably protected form thereof.
• R x is a hydrophilic or crosslinkable amino acid side-chain group and R y is a hydrophobic, or ionic amino acid side-chain group.
• hydrophilic, or crosslinkable, amino acid side-chain groups include tyrosine, serine, cysteine, threonine, aspartic acid (also known as aspartate, when charged), glutamic acid (also known as glutamate, when charged), asparagine, and glutamine.
• Such hydrophobic amino acid side- chain groups include a suitably protected tyrosine side-chain, a suitably protected serine side-chain, a suitably protected threonine side-chain, phenylalanine, alanine, valine, leucine, tryptophan, proline, benzyl and alkyl glutamates, or benzyl and alkyl aspartates or mixtures thereof.
• Such ionic amino acid side chain groups includes a lysine side-chain, arginine side-chain, or a suitably protected lysine or arginine side-chain, an aspartic acid side chain, glutamic acid side-chain, or a suitably protected aspartic acid or glutamic acid side-chain.
• protection of a polar or hydrophilic amino acid side-chain can render that amino acid nonpolar.
• a suitably protected tyrosine hydroxyl group can render that tyrosine nonpolar and hydrophobic by virtue of protecting the hydroxyl group.
• Suitable protecting groups for the hydroxyl, amino, and thiol, and carboylate functional groups of R x and R y are as described herein.
• R y comprises a mixture of hydrophobic and hydrophilic amino acid side-chain groups such that the overall poly(amino acid) block comprising R y is hydrophobic.
• Such mixtures of amino acid side-chain groups include phenylalanine/tyrosine, phenalanine/serine, leucine/tyrosine, and the like.
• R y is a hydrophobic amino acid side-chain group selected from phenylalanine, alanine, or leucine, and one or more of tyrosine, serine, or threonine.
• one or both of R x and R y comprise functional groups capable of forming cross-links.
• R x comprises a functional group capable of forming cross-links.
• functional groups are capable of such cross-linking, including, but not limited to, carboxylate, hydroxyl, thiol, and amino groups.
• Examples of NCA's having functional groups capable of forming cross-links, or protected forms thereof, include protected forms of glutamic and aspartic acid, such as: protected forms of cysteine capable of forming disulfide crosslinking via the corresponding thiol, such as:
• R is R* as defined herein, supra.
• amino acid monomers suitable for the methods of the present invention include protected forms of aspartic and glutamic acid, such as: protected forms of lysine, such as:
• amine salts of formula II can be treated with a suitable base to provide the corresponding free amine. Accordingly, another embodiment of the present invention provides a compound of formula II': ir wherein: m is 1-1000; m' is 0-1000;
• R x and R y are each independently a natural or unnatural amino acid side-chain group, wherein R x and R y are different from each other; and R 1 is an optionally substituted group selected from a C 1-6 aliphatic group, a 3-7 membered saturated, partially unsaturated, or aiyl monocyclic ring having 0-3 heteroatoms independently selected from oxygen, nitrogen, or sulfur, an 8-10 membered saturated, partially unsaturated, or aryl bicyclic ring having 0-5 heteroatoms independently selected from oxygen, nitrogen, or sulfur, a 12-14 membered saturated, partially unsaturated, or aryl tricyclic ring having 0-5 heteroatoms independently selected from oxygen, nitrogen, or sulfur, or an amine-terminal dendritic group.
• the block poly(amino acid) compounds of the present invention may be further derivatized by a polyethylene glycol group.
• a polyethylene glycol group Such derivatization is well known in the art and is known as PEGylation.
• the PEGylation of a compound of the present invention is achieved by polymerizing ethylene oxide onto the living polymer chain-end. For example, after the desired amino acid monomers are sequentially polymerized onto the compound of formula I, ethylene oxide is then polymerized onto the live polymer end resulting therefrom.
• Such methods of ethylene oxide polymerization are known in the art and include those described by Kubisa, et al. "Cationic activated monomer polymerization of heterocyclic monomers" /Prog. Polym. Sci./, 1999, 24, 1409- 1437.
• the compounds of the present invention may be derivatized by a suitable PEG group using PEGylation methods known in the art. Suitable PEG groups are described in detail in United States Patent Application serial number 1 1/256,735, filed October 25, 2005, the entirety of which is hereby incorporated herein by reference. Accordingly, another embodiment of the present invention provides a compound of formula III:
• R 1 is an optionally substituted group selected from a C). ⁇ aliphatic group, a 3-7 membered saturated, partially unsaturated, or aryl monocyclic ring having 0-3 heteroatoms independently selected from oxygen, nitrogen, or sulfur, an 8-10 membered saturated, partially unsaturated, or aryl bicyclic ring having 0-5 heteroatoms independently selected from oxygen, nitrogen, or sulfur, a 12-14 membered saturated, partially unsaturated, or aryl tricyclic ring having 0-5 heteroatoms independently selected from oxygen, nitrogen, or sulfur, or an amine-terminal dendritic group;
• R x and R y are each independently a natural or unnatural amino acid side-chain group, wherein R* and R y are different from each other;
• T is a valence bond or a bivalent, saturated or unsaturated, straight or branched Ci- 12 alkylene chain, wherein 0-6 methylene units of Q are independently replaced by -Cy-, -O-, -NR-, -S-, -OC(O)-, -C(O)O-, -C(O)-, -SO-, -SO 2 -, -NRSO 2 -, -SO 2 NR-, -NRC(O)-, -C(O)NR-, -OC(O)NR-, or -NRC(O)O-, wherein: each -Cy- is independently an optionally substituted 5-8 membered bivalent, saturated, partially unsaturated, or aryl ring having 0-4 heteroatoms independently selected from nitrogen, oxygen, or sulfur, or an optionally substituted 8-10 membered bivalent saturated, partially unsaturated, or aryl bicyclic ring having 0-5 heteroatoms independently selected from nitrogen
• R 4 is hydrogen, halogen, N 3 , CN, a mono-protected amine, a di-protected amine, a protected aldehyde, a protected hydroxyl, a protected carboxylic acid, a protected thiol, or an optionally substituted group selected from aliphatic, a 5-8 membered saturated, partially unsaturated, or aryl ring having 0-4 heteroatoms independently selected from nitrogen, oxygen, or sulfur, an 8-10 membered saturated, partially unsaturated, or aryl bicyclic ring having 0-5 heteroatoms independently selected from nitrogen, oxygen, or sulfur, or a detectable moiety.
• the T group of formula III is a valence bond or a bivalent, saturated or unsaturated, straight or branched Q-n alkylene chain, wherein 0-6 methylene units of Q are independently replaced by -Cy-, -O-, -NH-, -S-, -OC(O)-, -C(O)O-, -C(O)-, -SO-, -SO 2 -, -NHSO 2 -, -SO 2 NH-, -NHC(O)-, -C(O)NH-, -OC(O)NH-, or -NHC(O)O-, wherein each -Cy- is independently an optionally substituted 5-8 membered bivalent, saturated, partially unsaturated, or aryl ring having 0-4 heteroatoms independently selected from nitrogen, oxygen, or sulfur, or an optionally substituted 8-10 membered bivalent saturated, partially unsaturated, or aryl bicyclic
• T is a valence bond.
• T is a bivalent, saturated Ci_i 2 alkylene chain, wherein 0-6 methylene units of T are independently replaced by -Cy-, -O-, -NH-, -S-, -OC(O)-, -C(O)O-, or -C(O)-, wherein -Cy- is an optionally substituted 5-8 membered bivalent, saturated, partially unsaturated, or aryl ring having 0-4 heteroatoms independently selected from nitrogen, oxygen, or sulfur, or an optionally substituted 8-10 membered bivalent saturated, partially unsaturated, or aryl bicyclic ring having 0-5 heteroatoms independently selected from nitrogen, oxygen, or sulfur.
• T is -Cy- (i.e. a C] alkylene chain wherein the methylene unit is replaced by -Cy-), wherein -Cy- is an optionally substituted 5-8 membered bivalent, saturated, partially unsaturated, or aryl ring having 0- ⁇ heteroatoms independently selected from nitrogen, oxygen, or sulfur.
• -Cy- is an optionally substituted bivalent aryl group.
• -Cy- is an optionally substituted bivalent phenyl group.
• -Cy- is an optionally substituted 5-8 membered bivalent, saturated carbocyclic ring.
• -Cy- is an optionally substituted 5- 8 membered bivalent, saturated heterocyclic ring having 1-2 heteroatoms independently selected from nitrogen, oxygen, or sulfur.
• Exemplary -Cy- groups include bivalent rings selected from phenyl, pyridyl, pyrimidinyl, cyclohexyl, cyclopentyl, or cyclopropyl.
• the T group of formula III is -O-, -S-, -NH-, or -C(O)O-.
• the T group of formula III is -Cy-, -C(O)-, -C(O)NH-, or -NHC(O)-.
• the T group of formula III is any of -OCH 2 -, -OCH 2 C(O)-, -OCH 2 CH 2 C(O)-, -OCH 2 CH 2 O-, -OCH 2 CH 2 S-, -OCH 2 CH 2 C(O)O-, -OCH 2 CH 2 NH-, -OCH 2 CH 2 NHC(O)-, -OCH 2 CH 2 C(O)NH-, and
• the T group of formula III is any of -OCH 2 CH 2 NHC(O)CH 2 CH 2 C(O)O-, -OCH 2 CH 2 NHC(O)CH 2 OCH 2 C(O)O-,
• T groups are set forth in Table 1, below. Table 1 : Representative T groups
• the R 2 group of formula III is halogen, N3, CN, a mono-protected amine, a di-protected amine, a protected hydroxyl, a protected aldehyde, a protected thiol, -NHR 3 , -N(R 3 ) 2 , -SR 3 , -O(CH 2 CH 2 O) q (CH 2 ) r R 4 , -OC(O)R 3 , or -OS(O) 2 R 3 , wherein q and r are each independently 0-4, each R 3 is independently an optionally substituted group selected from aliphatic, a 5-8-membered saturated, partially unsaturated, or aryl ring having 0-4 heteroatoms independently selected from nitrogen, oxygen, or sulfur, an 8-10-membered saturated, partially unsaturated, or aryl bicyclic ring having 0-5 heteroatoms independently selected from nitrogen, oxygen, or sulfur, or a detectable moiety
• the R 2 group of formula III is -N 3 .
• the R 2 group of formula III is -CN.
• the R 2 group of formula III is -Br, -Cl, -F, or -I.
• the R 2 group of formula III is -OS(O) 2 R 3 , wherein R 3 is an optionally substituted aliphatic group, or an optionally substituted 5-8-membered aiyl ring.
• Examplary R 3 groups include p-tolyl and methyl.
• R 2 is p-toluenesulfonyloxy or methanesulfonyloxy.
• the R 2 group of formula III is -OR 3 wherein R 3 is an optionally substituted aliphatic group.
• R 3 is an optionally substituted aliphatic group.
• One exemplary R 3 group is 5-norbornen-2-yl- methyl.
• the R 2 group of formula III is -OR 3 wherein R 3 is a C 1-6 aliphatic group substituted with N 3 . Examples include -CH 2 N 3 .
• R 3 is an optionally substituted Ci_ 6 alkyl group.
• Examples include methyl, ethyl, propyl, butyl, pentyl, hexyl, 2-(tetrahydropyran-2- yloxy)ethyl, pyridin-2-yldisulfanylmethyl, methyldisulfanylmethyl, (4- acetylenylphenyl)methyl, 3-(methoxycarbonyl)-prop-2-ynyl, methoxycarbonylmethyl, 2-(N-methyl-N-(4-acetylenylphenyl)carbonylamino)-ethyl, 2-phthalimidoethyl,
• R 3 is an optionally substituted C 2 _ 6 alkenyl group. Examples include vinyl, allyl, crotyl, 2-propenyl, and but-3-enyl.
• R 3 group is a substituted aliphatic group, suitable substituents on R 3 include N 3 , CN, and halogen.
• R 3 is -CH 2 CN, -CH 2 CH 2 CN, -CH 2 CH(OCH 3 ) 2 , 4 ⁇ (bisbenzyloxymethyl)phenylmethyl, and the like.
• the R 2 group of formula III is -OR 3 wherein R 3 is an optionally substituted C 2 _ 6 alkynyl group. Examples include -CC ⁇ CH, -CH 2 C ⁇ CH, -CH 2 C ⁇ CCH 3 , and -CH 2 CH 2 C ⁇ CH.
• R 2 is propargyloxy.
• the R 2 group of formula IH is -OC(O)R 3 wherein R 3 is an optionally substituted aliphatic group.
• R 3 is an optionally substituted aliphatic group. Examples include methyl, ethyl, propyl, butyl, pentyl, hexyl, acetylenyl, propargyl, but-3-ynyl, vinyl, crotyl, 2-propenyl, azidomethyl, 5- norbornen-2-yl, octen-5-yl, triisopropylsilylacetylenyl, 4-vinylphenyl, 4- dipropargylaminophenyl, 4-propargyloxyphenyl, 4-(2-propargyldisulfanyl)methyl-phenyl, and 2-(propargyloxycarbonyl)ethyl.
• the R 2 group of formula III is -OR 3 wherein R 3 is an optionally substituted 5-8-membered aryl ring.
• R 3 is optionally substituted phenyl or optionally substituted pyridyl. Examples include phenyl, 4-t- butoxycarbonylaminophenyl, 4-azidomethylphenyl, 4-propargyloxyphenyl, 2-pyridyl, 3- pyridyl, and 4-pyridyl.
• R 2 is 4-t-butoxycarbonylaminophenoxy, 4-azidomethylphenoxy, or 4-propargyloxy ⁇ henoxy.
• the R 2 group of formula III is -OR 3 wherein R 3 is an optionally substituted phenyl ring.
• the R 2 group of formula III is -OR 3 wherein R 3 is phenyl substituted with one or more optionally substituted C 1-6 aliphatic groups.
• R 3 is phenyl substituted with vinyl, allyl, acetylenyl, -CH 2 N 3 , -CH 2 CH 2 N 3 , -CH 2 C ⁇ CCH 3 , or -CH 2 C ⁇ CH.
• the R 2 group of formula 111 is -OR 3 wherein R 3 is phenyl substituted with N 3 , N(R o ) 2 , CO 2 R o , or C(O)R o wherein each R o is independently as defined herein supra.
• the R 2 group of formula III is a protected hydroxyl group.
• the protected hydroxyl of the R 2 moiety is an ester, carbonate, sulfonate, allyl ether, ether, silyl ether, alkyl ether, arylalkyl ether, or alkoxyalkyl ether.
• the ester is a formate, acetate, propionate, pentanoate, crotonate, or benzoate.
• esters include formate, benzoyl formate, chloroacetate, trifluoroacetate, methoxyacetate, triphenylmethoxyacetate, p-chlorophenoxyacetate, 3-phenylpropionate, 4-oxopentanoate, 4,4-
• ethylenedithiopentanoate pivaloate (trimethylacetate), crotonate, 4-methoxy-crotonate, benzoate, p-benylbenzoate, 2,4,6-trimethylbenzoate.
• exemplary carbonates include 9- fluorenylmethyl, ethyl, 2,2,2-trichloroethyl, 2-(trimethylsilyl)ethyl,
• silyl ethers include trimethylsilyl, triethylsilyl, t-butyldimethylsilyl, t-butyldiphenylsilyl, triisopropylsilyl ether, and other trialkylsilyl ethers.
• exemplary alkyl ethers include methyl, benzyl, p-methoxybenzyl, 3,4-dimethoxybenzyl, trityl, t-butyl, and allyl ether, or derivatives thereof.
• Exemplary alkoxyalkyl ethers include acetals such as methoxymethyl, methylthiomethyl, (2-methoxyethoxy)methyl, benzyloxymethyl, beta-
• arylalkyl ethers include benzyl, p-methoxybenzyl (MPM), 3,4-dimethoxybenzyl, O-nitrobenzyl, p-nitrobenzyl, p-halobenzyl, 2,6-dichlorobenzyl, p-cyanobenzyl, 2- and 4-picolyl ethers.
• the R 2 group of formula III is -N(R 3 ) 2 wherein each R 3 is independently an optionally substituted group selected from aliphatic, phenyl, naphthyl, a 5-6 membered aryl ring having 1-4 heteroatoms independently selected from nitrogen, oxygen, or sulfur, or a 8-10 membered bicyclic aryl ring having 1-5 heteroatoms independently selected from nitrogen, oxygen, or sulfur, or a detectable moiety.
• the R 2 group of formula III is -N(R 3 ) 2 wherein the two R 3 groups are taken together with said nitrogen atom to form an optionally substituted 4-7 membered saturated, partially unsaturated, or aryl ring having 1-4 heteroatoms independently selected from nitrogen, oxygen, or sulfur.
• the two R 3 groups are taken together to form a 5-6-membered saturated or partially unsaturated ring having one nitrogen wherein said ring is substituted with one or two oxo groups.
• Such R 2 groups include, but are not limited to, phthalimide, maleimide and succinimide.
• the R 2 group of formula III is a mono-protected or di- protected amino group.
• R 2 is a mono-protected amine.
• R 2 is a mono-protected amine selected from aralkylamines, carbamates, ally! amines, or amides.
• Examplary mono-protected amino moieties include t-butyloxycarbonylamino, ethyloxycarbonylamino, methyloxycarbonylamino, trichloroethyloxy-carbonylamino, allyloxycarbonylamino, benzyloxocarbonylamino, allylamino, benzylamino, fluorenylmethylcarbonyl, formamido, acetamido, chloroacetamido, dichloroacetamido, trichloroacetamido, phenylacetamido, trifluoroacetamido, benzamido, and t-butyldiphenylsilylamino.
• R 2 is a di-protected amine.
• Exemplary di-protected amino moieties include di-benzylamino, di-allylamino, phthalimide, maleimido, succinimido, pyrrolo, 2,2,5,5-tetramethyl- [l,2,5]azadisilolidino, and azido.
• the R 2 moiety is phthalimido.
• the R 2 moiety is mono- or di-benzylamino or mono- or di- allylamino.
• the R 2 group of formula III is a protected aldehyde group.
• the protected aldehydo moiety of R 2 is an acyclic acetal, a cyclic acetal, a hydrazone, or an imine.
• Exemplary R 2 groups include dimethyl acetal, diethyl acetal, diisopropyl acetal, dibenzyl acetal, bis(2-nitrobenzyl) acetal, 1,3-dioxane, 1,3-dioxolane, and semicarbazone.
• R 2 is an acyclic acetal or a cyclic acetal.
• R 2 is a dibenzyl acetal.
• the R 2 group of formula III is a protected carboxylic acid group.
• the protected carboxylic acid moiety of R 2 is an optionally substituted ester selected from Ci_6 aliphatic or aryl, or a silyl ester, an activated ester, an amide, or a hydrazide. Examples of such ester groups include methyl, ethyl, propyl, isopropyl, butyl, isobutyl, benzyl, and phenyl ester.
• the protected carboxylic acid moiety of R 2 is an oxazoline or an ortho ester.
• the R 2 group of formula III is a protected thiol group.
• the protected thiol of R 2 is a disulfide, thioether, silyl thioether, thioester, thiocarbonate, or a thiocarbamate.
• K" is an optionally substituted thioether selected from alkyl, benzyl, or triphenylmethyl, or trichloroethoxycarbonyl thioester.
• R 1 is -S-S-pyridin-2-yl, -S- SBn, -S-SCH 3 , or -S-S(p-ethynylbenzyl). In certain embodmients, R 1 is -S-S-pyridin-2-yl.
• the R 2 group of formula III is a detectable moiety. According to another aspect of the invention, the R 2 group of formula III is a fluorescent moiety. Such fluorescent moieties are well known in the art and include coumarins, quinolones, benzoisoquinolones, hostasol, and Rhodamine dyes, to name but a few.
• Exemplary fluorescent moieties comprising R 2 include anthracen-9-yl-methoxy, pyren-4- yl-methoxy, 2-(9-H-carbazol-9-yl)-ethoxy, the carboxylate of rhodamine B, and the carboxylate of coumarin 343.
• the R 2 group of formula III is a group suitable for Click chemistry.
• One of ordinary skill in the art would recognize that certain R 2 groups of the present invention are suitable for Click chemistry.
• Compounds of formula III having R 2 groups suitable for Click chemistry are useful for conjugating said compounds to biological systems such as proteins, viruses, and cells, to name but a few.
• the other end-group functionality corresponding to the R 1 moiety of formula III, can be used to attach targeting groups for cell specific delivery including, but not limited to, fluorescent dyes, covalent attachment to surfaces, and incorporation into hydrogels.
• another embodiment of the present invention provides a method of conjugating the R 2 group of a compound of formula III to a macromolecule via Click chemistry.
• Yet another embodiment of the present invention provides a macromolecule conjugated to a compound of formula III via the R 2 group.
• the R 2 group of formula III is an azide- containing group. According to another embodiment, the R 2 group of formula III is an alkyne-containing group.
• the R 2 group of formula III has a terminal alkyne moiety.
• the R 2 group of formula III is an alkyne-containing moiety having an electron withdrawing group. Accordingly, in such embodiments, the R 2 group
• E is an electron withdrawing group and y is 0-6.
• electron withdrawing groups are known to one of ordinary skill in the art.
• E is an ester.
• R 2 group of formula III is
• E is an electron withdrawing group, such as a -C(O)O- group and y is 0-6.
• the present invention provides a compound of formula III-a:
• R ! is an optionally substituted group selected from a Ci-6 aliphatic group, a 3-7 membered saturated, partially unsaturated, or aryl monocyclic ring having 0-3 heteroatoms independently selected from oxygen, nitrogen, or sulfur, an 8-10 membered saturated, partially unsaturated, or aryl bicyclic ring having 0-5 heteroatoms independently selected from oxygen, nitrogen, or sulfur, a 12-14 membered saturated, partially unsaturated, or aryl tricyclic ring having 0-5 heteroatoms independently selected from oxygen, nitrogen, or sulfur, or an amine-terminal dendritic group;
• R x and R y are each independently a natural or unnatural amino acid side-chain group, wherein R x and R y are different from each other;
• R 2 is halogen, N 3 , CN, a mono-protected amine, a di-protected amine, a protected hydroxyl, a protected aldehyde, a protected thiol, -NHR 3 , -N(R 3 ) 2 , -SR 3 , -O(CH 2 CH2 ⁇ ) q (CH 2 )rR 4 , -OC(O)R 3 , or -OS(O) 2 R 3 ; q and r are each independently 0-4; each R 3 is independently an optionally substituted group selected from aliphatic, a 5-8-membered saturated, partially unsaturated, or aryl ring having 0-4 heteroatoms independently selected from nitrogen, oxygen, or sulfur, an 8-10- membered saturated, partially unsaturated, or aryl bicyclic ring having 0-5 heteroatoms independently selected from nitrogen, oxygen, or sulfur, or a detectable moiety, or: two R 3 on the same nitrogen atom are
• R 4 is hydrogen, halogen, N 3 , CN, a mono-protected amine, a di-protected amine, a protected aldehyde, a protected hydroxyl, a protected carboxylic acid, a protected thiol, or an optionally substituted group selected from aliphatic, a 5-8 membered saturated, partially unsaturated, or aryl ring having 0-4 heteroatoms independently selected from nitrogen, oxygen, or sulfur, an 8-10 membered saturated, partially unsaturated, or aryl bicyclic ring having 0-5 heteroatoms independently selected from nitrogen, oxygen, or sulfur, or a detectable moiety.
• the R 2 group of formula III-a is halogen, N 3 , CN, a mono-protected amine, a di-protected amine, a protected hydroxyl, a protected aldehyde, a protected thiol, -NHR 3 , -N(R 3 ) 2 , -SR 3 , -O(CH 2 CH 2 O) q (CH 2 ) r R 4 , -OC(O)R 3 , or -OS(O) 2 R 3 , wherein q and r are each independently 0-4, each R 3 is independently an optionally substituted group selected from aliphatic, a 5-8-membered saturated, partially unsaturated, or aryl ring having 0-4 heteroatoms independently selected from nitrogen, oxygen, or sulfur, an 8-10-membered saturated, partially unsaturated, or aryl bicyclic ring having 0-5 heteroatoms independently selected from nitrogen, oxygen, or sulfur, or a
• the R 2 group of formula III-a is -CN.
• the R" group of formula ⁇ i-a is -Br, -Cl, -F, or -I.
• the R 2 group of formula III-a is -OS(O) 2 R 3 , wherein R 3 is an optionally substituted aliphatic group, or an optionally substituted 5-8-membered aryl ring.
• Examplary R 3 groups include p-tolyl and methyl.
• R 2 is p-toluenesulfonyloxy or methanesulfonyloxy.
• the R 2 group of formula III-a is -OR 3 wherein R 3 is an optionally substituted aliphatic group.
• R 3 is an optionally substituted aliphatic group.
• One exemplary R 3 group is 5-norbornen-2-yl- methyl.
• the R 2 group of formula III-a is -OR 3 wherein R 3 is a C 1-6 aliphatic group substituted with N 3 . Examples include _CH 2 N3.
• R 3 is an optionally substituted C 1-6 alkyl group.
• Examples include methyl, ethyl, propyl, butyl, pentyl, hexyl, 2-(tetrahydropyran-2- yloxy)ethyl, pyridin-2-yldisulfanylmethyl, methyldisulfanylmethyl,
• R 3 is an optionally substituted C 2 _ 6 alkenyl group. Examples include vinyl, allyl, crotyl, 2-propenyl, and but-3-enyl.
• R 3 group is a substituted aliphatic group, suitable substituents on R 3 include N 3 , CN, and halogen.
• R 3 is -CH 2 CN, -CH 2 CH 2 CN, -CH 2 CH(OCHs) 2 , 4-(bisbenzyloxymethyl)phenylmethyl, and the like.
• the R 2 group of formula III-a is -OR 3 wherein R 3 is an optionally substituted C 2 _ 6 alkynyl group. Examples include -CC ⁇ CH, -CH 2 C ⁇ CH, -CH 2 C ⁇ CCH 3 , and -CH 2 CH 2 C ⁇ CH.
• R 2 is propargyloxy.
• the R 2 group of formula III-a is -OC(O)R 3 wherein R 3 is an optionally substituted aliphatic group.
• R 3 is an optionally substituted aliphatic group. Examples include methyl, ethyl, propyl, butyl, pentyl, hexyl, acetylenyl, propargyl, but-3-ynyl, vinyl, crotyl, 2-propenyl, azidomethyl, 5-norbornen-2-yl, octen-5-yl, triisopropylsilylacetylenyl, 4-vinylphenyl,
• R 2 group of formula III-a is -OR 3 wherein R 3 is an optionally substituted 5-8-membered aryl ring. In certain embodiments, R 3 is optionally substituted phenyl or optionally substituted pyridyl.
• R 2 is 4-t-butoxycarbonylaminophenoxy, 4-azidomethylphenoxy, or 4-propargyloxyphenoxy.
• the R 2 group of formula III-a is -OR 3 wherein R 3 is an optionally substituted phenyl ring.
• Suitable substituents on the R 3 phenyl ring include halogen; -(CH 2 ) 0-4 R o ; -(CH 2 ) 0-4 OR o ; -(CH 2 ) 0-4 CH(OR o ) 2 ; -(CH 2 ) 0-4 SR o ; -(CH 2 ) 0-4 Ph, which may be substituted with R o ; -(CH 2 ) 0-4 O(CH 2 )o-
• Ph which may be substituted with R o ; -CH CHPh, which may be substituted with R o ; -NO 2 ; -CN; -N 3 ; -(CH 2 ) 0-4 N(R o ) 2 ; -(CH 2 ) 0-4 N(R o )C(0)
• the R 2 group of formula III-a is -OR 3 wherein R 3 is phenyl substituted with one or more optionally substituted C 1-6 aliphatic groups.
• the R 2 group of formula III-a is -OR 3 wherein R 3 is phenyl substituted with N 3 , N(R o ) 2 , CO 2 R o , or C(O)R o wherein each R o is independently as defined herein supra.
• the R 2 group of formula III-a is a protected hydroxyl group.
• the protected hydroxy) of the R 2 moiety is an ester, carbonate, sulfonate, allyl ether, ether, silyl ether, alkyl ether, arylalkyl ether, or alkoxyalkyl ether.
• the ester is a formate, acetate, proprionate, pentanoate, crotonate, or benzoate.
• esters include formate, benzoyl formate, chloroacetate, trifluoroacetate, methoxyacetate, triphenylmethoxyacetate, p-chlorophenoxyacetate, 3-phenylpropionate, 4-oxopentanoaxe, *,*-
• ethylenedithiopentanoate pivaloate (trimethylacetate), crotonate, 4-methoxy-crotonate, benzoate, p-benylbenzoate, 2,4,6-trimethylbenzoate.
• exemplary carbonates include 9-fluorenylmethyl, ethyl, 2,2,2-trichloroethyl, 2-(trimethylsilyl)ethyl,
• silyl ethers include trimethylsilyl, triethylsilyl, t-butyldimethylsilyl, t-butyldiphenylsilyl, triisopropylsilyl ether, and other trialkylsilyl ethers.
• exemplary alkyl ethers include methyl, benzyl, p-methoxybenzyl, 3,4-dimethoxybenzyl, trityl, t-butyl, and allyl ether, or derivatives thereof.
• Exemplary alkoxyalkyl ethers include acetals such as methoxymethyl, methylthiomethyl, (2-methoxyethoxy)methyl, benzyloxymethyl, beta-
• arylalkyl ethers include benzyl, p-methoxybenzyl (MPM), 3,4-dimethoxybenzyl, O-nitrobenzyl, p-nitrobenzyl, p-halobenzyl, 2,6-dichlorobenzyl, p-cyanobenzyl, 2- and 4-picolyl ethers.
• the R 2 group of formula III-a is -N(R 3 ) 2 wherein each R 3 is independently an optionally substituted group selected from aliphatic, phenyl, naphthyl, a 5-6 membered aryl ring having 1-4 heteroatoms independently selected from nitrogen, oxygen, or sulfur, or a 8-10 membered bicyclic aryl ring having 1 -5 heteroatoms independently selected from nitrogen, oxygen, or sulfur, or a detectable moiety.
• the R 2 group of formula III-a is -N(R 3 ) 2 wherein the two R 3 groups are taken together with said nitrogen atom to form an optionally substituted 4-7 membered saturated, partially unsaturated, or aryl ring having 1-4 heteroatoms independently selected from nitrogen, oxygen, or sulfur.
• the two R 3 groups are taken together to form a 5-6-membered saturated or partially unsaturated ring having one nitrogen wherein said ring is substituted with one or two oxo groups.
• Such R 2 groups include, but are not limited to, phthalimide, maleimide and succinimide.
• the R 2 group of formula III-a is a mono-protected or di-protected amino group. In certain embodiments R 2 is a mono-protected amine. In certain embodiments R 2 is a mono-protected amine selected from aralkylamines, carbamates, allyl amines, or amides.
• Examplary mono-protected amino moieties include t-butyloxycarbonylamino, ethyloxycarbonylamino, methyloxycarbonylamino, trichloroethyloxy-carbonylamino, allyloxycarbonylamino, benzyloxocarbonylamino, allylamino, benzylamino, fluorenylmethylcarbonyl, formamido, acetamido, chloroacetamido, dichloroacetamido, trichloroacetamido, phenylacetamido, trifluoroacetamido, benzamido, and t-butyldiphenylsilylamino.
• R 2 is a di-protected amine.
• Exemplary di-protected amino moieties include di-benzylamino, di-allylamino, phthalimide, maleimido, succinimido, pyrrolo, 2,2,5, 5-tetramethyl- [l,2,5]azadisilolidino, and azido.
• the R 2 moiety is phthalimido.
• the R 2 moiety is mono- or di-benzylamino or mono- or di- allylamino.
• the R 2 group of formula III-a is a protected aldehyde group.
• the protected aldehydo moiety of R 2 is an acyclic acetal, a cyclic acetal, a hydrazone, or an imine.
• Exemplary R 2 groups include dimethyl acetal, diethyl acetal, diisopropyl acetal, dibenzyl acetal, bis(2-nitrobenzyl) acetal, 1,3-dioxane, 1,3-dioxolane, and semicarbazone.
• R 2 is an acyclic acetal or a cyclic acetal.
• R 2 is a dibenzyl acetal.
• the R 2 group of formula III-a is a protected carboxylic acid group.
• the protected carboxylic acid moiety of R 2 is an optionally substituted ester selected from Ci_6 aliphatic or aryl, or a silyl ester, an activated ester, an amide, or a hydrazide. Examples of such ester groups include methyl, ethyl, propyl, isopropyl, butyl, isobutyl, benzyl, and phenyl ester.
• the protected carboxylic acid moiety of R 2 is an oxazoline or an ortho ester. Examples of such protected carboxylic acid moieties include oxazolin-2-yl and 2-methoxy-[l ,3]dioxin- 2-yl.
• the R 2 group of formula III-a is a protected thiol group.
• the protected thiol of R 2 is a disulfide, thioether, silyl thioether, thioester, thiocarbonate, or a thiocarbamate.
• protected thiols include triisopropylsilyl thioether, t-butyldimethylsilyl thioether, t-butyl thioether, benzyl thioether, p-methylbenzyl thioether, triphenylmethyl thioether, and p-methoxyphenyldiphenylmethyl thioether.
• R 2 is an optionally substituted thioether selected from alkyl, benzyl, or triphenylmethyl, or trichloroethoxycarbonyl thioester.
• R 1 is -S-S-pyridin-2-yl, -S-SBn, -S-SCH 3 , or -S-S(p-ethynylbenzyl).
• R 1 is -S-S-pyridin- 2-yl.
• the R 2 group of formula III-a is a detectable moiety.
• the R 2 group of formula III-a is a fluorescent moiety.
• fluorescent moieties are well known in the art and include coumarins, quinolones, benzoisoquinolones, hostasol, and Rhodamine dyes, to name but a few.
• Exemplary fluorescent moieties comprising R 2 include anthracen-9-yl-methoxy, pyren-4-yl-methoxy, 2-(9-H-carbazol-9-yl)-ethoxy, the carboxylate of rhodamine B, and the carboxylate of coumarin 343.
• the R 2 group of formula III-a is a group suitable for
• Compounds of formula III-a having R 2 groups suitable for Click chemistry are useful for conjugating said compounds to biological systems such as proteins, viruses, and cells, to name but a few.
• the other end-group functionality corresponding to the R 1 moiety of formula III-a, can be used to attach targeting groups for cell specific delivery including, but not limited to, fluorescent dyes, covalent attachment to surfaces, and incorporation into hydrogels.
• Another embodiment of the present invention provides a method of conjugating the
• R 2 group of a compound of formula III-a to a macromolecule via Click chemistry.
• Yet another embodiment of the present invention provides a macromolecule conjugated to a compound of formula III-a via the R 2 group.
• the R 2 group of formula III-a is an azide- containing group. According to another embodiment, the R 2 group of formula III-a is an alkyne-containing group.
• the R 2 group of formula III-a has a terminal alkyne moiety.
• the R 2 group of formula III-a is an alkyne-containing moiety having an electron withdrawing group. Accordingly, in such embodiments, the R 2
• group of formula III-a is wherein E is an electron withdrawing group and y is 0-6. Such electron withdrawing groups are known to one of ordinary skill in the art.
• E is an ester.
• formula III-a is wherein E is an electron withdrawing group, such as a -C(O)O- group and y is 0-6.
• the R 2 group of formula III is selected from any of those R 2 groups depicted in Table 2, supra.
• the R 2 group of formula III is group xlii orxxiv.
• the R 2 group of formula III is xix, xvii, xviii, xxix, xxxii, xlviv, xlvii, or xlviii.
• III is ix, xxii, xxx, xxxi, xlv, xlviii, xlix, Ixxi.
• R 1 is an optionally substituted group selected from a C 1-6 aliphatic group, a 3-7 membered saturated, partially unsaturated, or aryl monocyclic ring having 0-3 heteroatoms independently selected from oxygen, nitrogen, or sulfur, an 8-10 membered saturated, partially unsaturated, or aryl bicyclic ring having 0-5 heteroatoms independently selected from oxygen, nitrogen, or sulfur, a 12-14 membered saturated, partially unsaturated, or aryl tricyclic ring having 0-5 heteroatoms independently selected from oxygen, nitrogen, or sulfur, or an amine-terminal dendritic group;
• R* and R y are each independently a natural or unnatural amino acid side-chain group, wherein R x and R y are different from each other;
• R 2 is halogen, N 3 , CN, a mono-protected amine, a di-protected amine, a protected hydroxyl, a protected aldehyde, a protected thiol, -NHR 3 , -N(R 3 ) 2 , -SR 3 , -O(CH 2 CH 2 O) q (CH 2 ) r R 4 , -OC(O)R 3 , or -OS(O) 2 R 3 ; q and r are each independently 0-4; each R 3 is independently an optionally substituted group selected from aliphatic, a 5-8-membered saturated, partially unsaturated, or aryl ring having 0-4 heteroatoms independently selected from nitrogen, oxygen, or sulfur, an 8-10 membered saturated, partially unsaturated, or aryl bicyclic ring having 0-5 heteroatoms independently selected from nitrogen, oxygen, or sulfur, or a detectable moiety, or: two R 3 on the same nitrogen atom are
• R 4 is hydrogen, halogen, N 3 , CN, a mono-protected amine, a di-protected amine, a protected aldehyde, a protected hydroxyl, a protected carboxylic acid, a protected thiol, or an optionally substituted group selected from aliphatic, a 5-8 membered saturated, partially unsaturated, or aryl ring having 0-4 heteroatoms independently selected from nitrogen, oxygen, or sulfur, an 8-10 membered saturated, partially unsaturated, or aryl bicyclic ring having 0-5 heteroatoms independently selected from nitrogen, oxygen, or sulfur, or a detectable moiety; wherein said compound is prepared by a method comprising the steps of;
• R 1 is an optionally substituted group selected from a Ci- 6 aliphatic group, a 3-7 membered saturated, partially unsaturated, or aryl monocyclic ring having 0-3 heteroatoms independently selected from oxygen, nitrogen, or sulfur, an 8-10 membered saturated, partially unsaturated, or aryl bicyclic ring having 0-5 heteroatoms independently selected from oxygen, nitrogen, or sulfur, a 12-14 membered saturated, partially unsaturated, or aryl tricyclic ring having 0-5 heteroatoms independently selected from oxygen, nitrogen, or sulfur, or an amine-terminal dendritic group; and
• A is a suitable acid anion
• the coupling step (d), as described generally above, is achieved using coupling methods well known in the art. Such methods include those taught in “Organic Chemistry”, Thomas Sorrell, University Science Books, Sausalito: 1999, and "March's Advanced Organic Chemistry", 5 th Ed., Ed.: Smith, M.B. and March, J., John Wiley & Sons, New York: 2001.
• the coupling step (d), as described generally above is achieved by Mitsunobu coupling.
• the coupling step (d), as described generally above is achieved by carbodiimide coupling, using, for example, EDC, DCC, or DIC.
• R x and R y are each independently a natural or unnatural amino acid side-chain group, wherein R x and R y are different from each other;
• R 1 is an optionally substituted group selected from a C 1-6 aliphatic group, a 3-7 membered saturated, partially unsaturated, or aiyl monocyclic ring having 0-3 heteroatoms independently selected from oxygen, nitrogen, or sulfur, an 8-10 membered saturated, partially unsaturated, or aryl bicyclic ring having 0-5 heteroatoms independently selected from oxygen, nitrogen, or sulfur, a 12-14 membered saturated, partially unsaturated, or aryl tricyclic ring having 0-5 heteroatoms independently selected from oxygen, nitrogen, or sulfur, or an amine-terminal dendritic group;
• R 2a is a mono-protected amine, a di-protected amine, -NHR 3 , -N(R 3 ) 2 , -NHC(O)R 3 , -NR 3 C(O)R 3 , -NHC(O)NHR 3 , -NHC(O)N(R 3 ) 2 , -NR 3 C(O)NHR 3 , -NR 3 C(O)N(R 3 ) 2 , -NHC(O)OR 3 , -NR 3 C(O)OR 3 , -NHSO 2 R 3 , or -NR 3 SO 2 R 3 ; and each R 3 is independently an optionally substituted group selected from aliphatic, a 5-8 membered saturated, partially unsaturated, or aryl ring having 0-4 heteroatoms independently selected from nitrogen, oxygen, or sulfur, an 8-10-membered saturated, partially unsaturated, or aryl bicyclic ring having 0-5 heteroatoms independently selected
• the R 2a group of formula II-a is a mono-protected amine, a di-protected amine, -NHR 3 , -N(R 3 ) 2 , -NHC(O)R 3 , -NR 3 C(O)R 3 , -NHC(O)NHR 3 , -NHC(O)N(R 3 ) 2 , -NR 3 C(O)NHR 3 , -NR 3 C(O)N(R 3 ) 2 , -NHC(O)OR 3 , -NR 3 C(O)OR 3 , -NHSO 2 R 3 , or -NR 3 SO 2 R 3 , wherein each R 3 is independently an optionally substituted group selected from aliphatic, a 5-8 membered saturated, partially unsaturated, or aryl ring having 0-4 heteroatoms independently selected from nitrogen, oxygen, or sulfur, an 8-10 membered saturated, partially unsaturated, or ary
• the R 2a group of formula II-a is -NHR 3 or -N(R 3 ) 2 wherein each R 3 is an optionally substituted aliphatic group.
• R 3 is 5-norbornen-2-yl-methyl.
• the R 2a group of formula II-a is -NHR 3 wherein R 3 is a Q. 6 aliphatic group substituted with N 3 . Examples include -CH 2 N 3 .
• R 3 is an optionally substituted C ⁇ e alkyl group.
• Examples include methyl, ethyl, propyl, butyl, pentyl, hexyl, 2-(tetrahydropyran-2-yloxy)ethy], pyridin-2-yldisulfanylmethyl, methyldisulfanylmethyl, (4-acetylenylphenyl)methyl, 3-(methoxycarbonyl)-prop-2-ynyl, methoxycarbonylmethyl, z-(JN-methyl-IN-(4-acetylenylphenyl)carbonylamino)-ethyl, 2-phthalimidoethyl,
• R 3 is an optionally substituted C 2 _ 6 alkenyl group. Examples include vinyl, allyl, crotyl, 2- propenyl, and but-3-enyl.
• R 3 group is a substituted aliphatic group, suitable substituents on R 3 include N 3 , CN, and halogen.
• R 3 is -CH 2 CN, -CH 2 CH 2 CN, -CH 2 CH(OCH 3 ) 2 , 4-(bisbenzyloxymethyl)phenylmethyl, and the like.
• R 2a is
• the R 2a group of formula II-a is -NHR 3 wherein R 3 is an optionally substituted phenyl ring.
• the K"" group of formula II-a is -NHR 3 wherein R 3 is phenyl substituted with one or more optionally substituted C 1-6 aliphatic groups.
• the R 2a group of formula II-a is -NHR 3 wherein R 3 is phenyl substituted with N 3 , N(R o ) 2 , CO 2 R o , or C(O)R o wherein each R o is independently as defined herein supra.
• the R 2a group of formula II-a is -N(R 3 ) 2 wherein each R 3 is independently an optionally substituted group selected from aliphatic, phenyl, naphthyl, a 5-6 membered aryl ring having 1-4 heteroatoms independently selected from nitrogen, oxygen, or sulfur, or a 8-10 membered bicyclic aryl ring having 1-5 heteroatoms independently selected from nitrogen, oxygen, or sulfur, or a detectable moiety.
• the R 2a group of formula II-a is -N(R 3 ) 2 wherein the two R 3 groups are taken together with said nitrogen atom to form an optionally substituted 4-7 membered saturated, partially unsaturated, or aryl ring having 1 -4 heteroatoms independently selected from nitrogen, oxygen, or sulfur.
• the two R 3 groups are taken together to form a 5-6-membered saturated or partially unsaturated ring having one nitrogen wherein said ring is substituted with one or two oxo groups.
• Such R 2a groups include, but are not limited to, phthalimide, maleimide and succinimide.
• the R 2a group of formula II-a is a mono-protected or di-protected amino group. In certain embodiments R 2a is a mono-protected amine. In certain embodiments R 2a is a mono-protected amine selected from aralkylamines, carbamates, allyl amines, or amides.
• Examplary mono-protected amino moieties include t-butyloxycarbonylamino, ethyloxycarbonylamino, methyloxycarbonylamino, trichloroethyloxy-carbonylamino, allyloxycarbonylamino, benzyloxocarbonylamino, allylamino, benzylamino, fluorenylmethylcarbonyl, formamido, acetamido, chloroacetamido, dichloroacetamido, trichloroacetamido, phenylacetamido, trifluoroacetamido, benzamido, and t-butyldiphenylsilylamino.
• R 2a is a di-protected amine.
• Exemplary di-protected amino moieties include di-benzylamino, di-allylamino, phthalimide, maleimido, succinimido, pyrrolo, 2,2,5,5-tetramethyl- [l,2,5]azadisilolidino, and azido.
• the R 2a moiety is phthalimide In other embodiments, the R 2a moiety is mono- or di-benzylamino or mono- or di- allylamino.
• the R 2a group of formula II-a comprises a group suitable for Click chemistry.
• R 2a groups of the present invention are suitable for Click chemistry.
• Click chemistry are useful for conjugating said compounds to biological systems such as proteins, viruses, and cells, to name but a few.
• the other end-group functionality corresponding to the R 1 moiety of formula II-a, can be used to attach targeting groups for cell specific delivery including, but not limited to, fluorescent dyes, covalent attachment to surfaces, and incorporation into hydrogels.
• another embodiment of the present invention provides a method of conjugating the R 2a group of a compound of formula II-a to a macromolecule via Click chemistry.
• Yet another embodiment of the present invention provides a macromolecule conjugated to a compound of formula II-a via the R 2a group.
• the R 2a group of formula II-a is an azide- containing group. According to another embodiment, the R 2a group of formula II-a is an alkyne-containing group.
• the R 2a group of formula II-a has a terminal alkyne moiety.
• the R 2a group of formula II-a is an alkyne-containing moiety having an electron withdrawing group. Accordingly, in such embodiments, the R 2a
• group of formula II-a is , wherein E is an electron withdrawing group and y is 0-6. Such electron withdrawing groups are known to one of ordinary skill in the art. In certain embodiments, E is an ester. In other embodiments, the R 2a group of
• formula II-a is , wherein E is an electron withdrawing group, such as a -C(O)O- group and y is 0-6.
• the present invention provides compounds of formula II-a, as described above, wherein said compounds have a polydispersity index ("PDI") of about 1.0 to about 1.2. According to another embodiment, the present invention provides compounds of formula II-a, as described above, wherein said compound has a polydispersity index (“PDI") of about 1.03 to about 1.15. According to yet another embodiment, the present invention provides compounds of formula II-a, as described above, wherein said compound has a polydispersity index (“PDI") of about 1.10 to about 1.12. According to other embodiments, the present invention provides compounds of formula II-a having a PDI of less than about 1.10.
• the present invention provides compounds of formula
• n is about 225. In other embodiments, n is about 200 to about 300. In still other embodiments, n is about 200 to about 250. In still other embodiments, n is about 100 to about 150. In still other embodiments, n is about 400 to about 500.
• R 2a groups are set forth in Table 3, below.
• the R 2a group of formula II-a is selected from any of those R 2a groups depicted in Table 3, supra.
• the R 2a group of formula II-a is group v, viii, xvi, xix, xxii, xxx, xxxi, xxxiii, xxxiv, xxxv, xxxvi, xxxvii, or xlii.
• the R'" group of formula II-a is JCV, xviii, xx, xxi, xxxviii, or xxxix.
• non-polymeric amine salt initiators of the present invention may comprise more than one amine salt, and thus the present invention also encompasses bifunctional compound of formula I-a:
• Q is an optionally substituted bivalent group selected from a C] -6 aliphatic group, a 3-7 membered saturated, partially unsaturated, or aryl monocyclic ring having 0-3 heteroatoms independently selected from oxygen, nitrogen, or sulfur, an 8-10 membered saturated, partially unsaturated, or aryl bicyclic ring having 0-5 heteroatoms independently selected from oxygen, nitrogen, or sulfur, a 12-14 membered saturated, partially unsaturated, or aryl tricyclic ring having 0-5 heteroatoms independently selected from oxygen, nitrogen, or sulfur, or an amine-terminal dendritic group; and each A is a suitable acid anion.
• Q is an optionally substituted bivalent group selected from a Q -6 aliphatic group, a 3-7 membered saturated, partially unsaturated, or aryl monocyclic ring having 0-3 heteroatoms independently selected from oxygen, nitrogen, or sulfur, an 8- 10 membered saturated, partially unsaturated, or aryl bicyclic ring having 0-5 heteroatoms independently selected from oxygen, nitrogen, or sulfur, a 12-14 membered saturated, partially unsaturated, or aryl tricyclic ring having 0-5 heteroatoms independently selected from oxygen, nitrogen, or sulfur, or an amine-terminal dendritic group;
• R x is a natural or unnatural amino acid side-chain group;
• A is a suitable acid anion.
• Q is an optionally substituted bivalent group selected from a C 1-6 aliphatic group, a 3-7 membered saturated, partially unsaturated, or aryl monocyclic ring having 0-3 heteroatoms independently selected from oxygen, nitrogen, or sulfur, an 8- 10 membered saturated, partially unsaturated, or aryl bicyclic ring having 0-5 heteroatoms independently selected from oxygen, nitrogen, or sulfur, a 12-14 membered saturated, partially unsaturated, or aryl tricyclic ring having 0-5 heteroatoms independently selected from oxygen, nitrogen, or sulfur, or an amine-terminal dendritic group;
• R x is a natural or unnatural amino acid side-chain group; and each A is a suitable acid anion.
• each of the embodiments relating to the m and R x groups of formula II apply to the m and R x groups of formula IV both singly and in combination.
• the Q group of formulae I-a and IV is substituted with -N 3 .
• the Q group of formulae I-a and IV is an optionally substituted bivalent aliphatic group.
• said Q moiety is an optionally substituted bivalent alkyl group.
• said Q moiety is an optionally substituted bivalent alkynyl or alkenyl group.
• suitable substituents on Q include CN, a mono-protected amino group, a di-protected amino group, a protected aldehyde group, a protected hydroxy! group, a protected carboxylic acid group, a protected thiol group, or a detectable moiety.
• Q group of formulae I-a and IV is an optionally substituted bivalent group selected from 5-7 membered saturated, partially unsaturated, or aryl monocyclic ring having 0-2 heteroatoms independently selected from oxygen, nitrogen, or sulfur.
• R 1 is a 9-10 membered saturated, partially unsaturated, or aryl bicyclic ring having 0-3 heteroatoms independently selected from oxygen, nitrogen, or sulfur.
• Q is a 13-14 membered saturated, partially unsaturated, or aryl tricyclic ring having 0-3 heteroatoms independently selected from oxygen, nitrogen, or sulfur.
• Such cyclic Q groups, as defined herein, include optionally substituted phenyl, naphthyl, and anthracenyl groups.
• the Q group of formulae I-a and IV is an optionally substituted 5-6 membered saturated, partially unsaturated, or aryl monocyclic ring having 0-3 heteroatoms independently selected from oxygen, nitrogen, or sulfur.
• the Q group is an optionally substituted phenyl group.
• Exemplary substituents on Q include -N 3 , -CN, an amino group, a mono-protected amino group, a di- protected amino group, a protected aldehyde group, a protected hydroxyl group, a protected carboxylic acid group, a protected thiol group, an optionally substituted aliphatic group, or a detectable moiety.
• the Q group of formulae I-a and IV comprises a fluorescent moiety.
• the Q group of formulae I-a and IV is substituted with a protected hydroxyl group.
• the protected hydroxyl of the Q moiety is an ester, carbonate, sulfonate, allyl ether, ether, silyl ether, alkyl ether, arylalkyl ether, or alkoxyalkyl ether.
• the ester is a formate, acetate, proprionate, pentanoate, crotonate, or benzoate.
• esters include formate, benzoyl formate, chloroacetate, trifluoroacetate, methoxyacetate, triphenylmethoxyacetate, p- chlorophenoxyacetate, 3-phenylpropionate, 4-oxopentanoate, 4,4-
• ethylenedithiopentanoate pivaloate (trimethylacetate), crotonate, 4-methoxy-crotonate, benzoate, p-benylbenzoate, 2,4,6-trimethylbenzoate.
• exemplary carbonates include 9- fluorenylmethyl, ethyl, 2,2,2-trichloroethyl, 2-(trimethylsilyl)ethyl, 2- (phenylsulfonyl)ethyl, vinyl, allyl, and p-nitrobenzyl carbonate.
• silyl ethers examples include trimethylsilyl, triethylsilyl, t-butyldimethylsilyl, t-butyldiphenylsilyl, triisopropylsilyl ether, and other trialkylsilyl ethers.
• exemplary alkyl ethers include methyl, benzyl, p-methoxybenzyl, 3,4-dimethoxybenzyl, trityl, t-butyl, and allyl ether, or derivatives thereof.
• Exemplary alkoxyalkyl ethers include acetals such as methoxymethyl, methylthiomethyl, (2-methoxyethoxy)methyl, benzyloxymethyl, beta-
• arylalkyl ethers include benzyl, p-methoxybenzyl (MPM), 3,4-dimethoxybenzyl, O-nitrobenzyl, p-nitrobenzyl, p-halobenzyl, 2,6-dichlorobenzyl, p-cyanobenzyl, 2- and 4-picolyl ethers.
• the Q group of formulae I-a and IV is substituted with a mono-protected or di-protected amino group.
• the amino moiety is a mono-protected amine.
• the amino moiety is a mono-protected amine selected from aralkylamines, carbamates, allyl amines, or amides.
• Examplary mono-protected amino moieties include t-butyloxycarbonylamino, ethyloxycarbonylamino, methyloxycarbonylamino, trichloroethyloxy-carbonylamino, allyloxycarbonylamino, benzyloxocarbonylamino, allylamino, benzylamino, fluorenylmethylcarbonyl, formamido, acetamido, chloroacetamido, dichloroacetamido, trichloroacetamido, phenylacetamido, trifluoroacetamido, benzamido, and t-butyldiphenylsilylamino.
• the amino moiety is a di-protected amine.
• Exemplary di-protected amines include di-benzylamine, di-allylamine, phthalimide, maleimide, succinimide, pyrrole, 2,2,5,5-tetramethyl-[l,2,5]azadisilolidine, and azide.
• the amino moiety is phthalimido.
• the amino moiety is mono- or di-benzylamino or mono- or di-allylamino.
• the amino moiety group is 2-dibenzylaminoethoxy.
• the Q group of formulae I-a and IV is substituted with a protected aldehyde group.
• the protected aldehydo moiety of Q is an acyclic acetal, a cyclic acetal, a hydrazone, or an imine.
• exemplary protected aldehyde moieties include dimethyl acetal, diethyl acetal, diisopropyl acetal, dibenzyl acetal, bis(2- nitrobenzyl) acetal, 1,3-dioxane, 1,3-dioxolane, and semicarbazone.
• the protected aldehyde moiety is an acyclic acetal or a cyclic acetal. In other embodiments, the protected aldehyde moiety is a dibenzyl acetal.
• the Q group of formulae I-a and IV is substituted with a protected carboxylic acid group.
• the protected carboxylic acid moiety of Q is an optionally substituted ester selected from Ci_6 aliphatic or aryl, or a silyl ester, an activated ester, an amide, or a hydrazide.
• ester groups include methyl, ethyl, propyl, isopropyl, butyl, isobutyl, benzyl, and phenyl ester.
• the protected carboxylic acid moiety of Q is an oxazoline or an ortho ester.
• protected carboxylic acid moieties include oxazolin-2-yl and 2- methoxy-[l,3]dioxin-2-yl.
• the protected carboxylic acid moiety of Q is oxazolin-2-ylmethoxy or 2-oxazolin-2-yl-l-propoxy.
• the Q group of formulae I-a and IV is substituted with a protected thiol group.
• the protected thiol of Q is a disulfide, thioether, silyl thioether, thioester, thiocarbonate, or a thiocarbamate.
• protected thiols examples include triisopropylsilyl thioether, t-b ⁇ tyl d imethy Is ily 1 thioether, t-butyl thioether, benzyl thioether, p-methylbenzyl thioether, triphenylmethyl thioether, and p-methoxyphenyldiphenylmethyl thioether.
• the protected thiol moiety of Q is an optionally substituted thioether selected from alley], benzyl, or triphenylmethyl, or trichloroethoxycarbonyl thioester.
• the protected thiol moiety of Q is -S-S-pyridin-2-yl, -S-SBn, -S-SCH 3 , or -S-S(p- ethynylbenzyl).
• the protected thiol moiety of Q is -S-S-pyridin-2- yl.
• the protected thiol moiety of Q is 2- triphenylmethylsulfanyl-ethoxy.
• the Q group of formulae I-a and IV is substituted with a crown ether moiety.
• exemplary crown ether moieties include radicals of 12-crown-4, 15- crown-5, and 18-crown-6.
• the Q group of formulae I-a and IV is substituted with a detectable moiety.
• the Q group of formulae I-a and IV is substituted with a fluorescent moiety.
• fluorescent moieties are well known in the art and include coumarins, quinolones, benzoisoquinolones, hostasol, and Rhodamine dyes, to name but a few.
• Exemplary fluorescent moieties include anthracen-9-yl, pyren-4-yl, 9-H-carbazol-9-yl, the carboxylate of rhodamine B, and the carboxylate of coumarin 343.
• the Q group of formulae I-a and IV is a bivalent fluorescent moiety.
• the Q group of formulae I-a and IV is substituted with a group suitable for Click chemistry.
• Click reactions tend to involve high-energy (“spring- loaded”) reagents with well-defined reaction coordinates, that give rise to selective bond- forming events of wide scope. Examples include nucleophilic trapping of strained-ring electrophiles (epoxide, aziridines, aziridinium ions, episulfonium ions), certain carbonyl reactivity (e.g., the reaction between aldehydes and hydrazines or hydroxylamines), and several cycloaddition reactions. The azide-alkyne 1,3-dipolar cycloaddition is one such reaction.
• Click chemistry is known in the art and one of ordinary skill in the art would recognize that certain substituents on Q of the present invention are suitable for Click chemistry.
• Compounds of formulae I-a and IV having substituents on Q that are suitable for Click chemistry are useful for conjugating said compounds to biological systems or macromolecules such as proteins, viruses, and cells, to name but a few.
• the Click reaction is known to proceed quickly and selectively under physiological conditions.
• most conjugation reactions are carried out using the primary amine functionality on proteins (e.g. lysine or protein end-group). Because most proteins contain a multitude of lysines and arginines, such conjugation occurs uncontrollably at multiple sites on the protein.
• the end-group functionalities, corresponding to free amine or salt thereof, group of formula IV can be used to attach targeting groups for cell-specific delivery including, but not limited to, detectable moieties, such as fluorescent dyes, covalent attachment to surfaces, and incorporation into hydrogels.
• the Q group of formulae I-a and IV is substituted with an azide-containing group. According to another embodiment, the Q group of formulae I-a and IV is substituted with an alkyne-containing group. In certain embodiments, the substituent on Q comprises a terminal alkyne moiety. In other embodiments, the Q group of formulae I-a and IV is substituted with an alkyne moiety having an electron withdrawing group. Accordingly, in such embodiments, the substituent
• E is an electron withdrawing group and y is 0-6.
• electron withdrawing groups are known to one of ordinary skill in the art.
• E is an ester.
• the substituent on Q is
• E is an electron withdrawing group, such as a -C(O)O- group and y is 0-6.
• exemplary compounds of formula I-a include:
• Q is an optionally substituted bivalent group selected from a C] .6 aliphatic group, a 3-7 membered saturated, partially unsaturated, or aryl monocyclic ring having 0-3 heteroatoms independently selected from oxygen, nitrogen, or sulfur, an 8-10 membered saturated, partially unsaturated, or aryl bicyclic ring having 0-5 heteroatoms independently selected from oxygen, nitrogen, or sulfur, a 12-14 membered saturated, partially unsaturated, or aryl tricyclic ring having 0-5 heteroatoms independently selected from oxygen, nitrogen, or sulfur, or an amine-terminal dendritic group;
• R x is a natural or unnatural amino acid side-chain group
• R 2a is a mono-protected amine, a di-protected amine, -NHR 3 , -N(R 3 ) 2 , -NHC(O)R 3 , -NR 3 C(O)R 3 , -NHC(O)NHR 3 , -NHC(O)N(R 3 ) 2 , -NR 3 C(O)NHR 3 , -NR 3 C(O)N(R 3 ) 2 , -NHC(O)OR 3 , -NR 3 C(O)OR 3 , -NHSO 2 R 3 , or -NR 3 SO 2 R 3 ; and each R 3 is independently an optionally substituted group selected from aliphatic, a 5-8 membered saturated, partially unsaturated, or aryl ring having 0-4 heteroatoms independently selected from nitrogen, oxygen, or sulfur, an 8-10-membered saturated, partially unsaturated, or aryl bicyclic ring having 0-5 heteroatoms independently selected
• each A is a suitable acid anion and each Q, m, m', R y , and R x are as defined above and in classes and subclasses described herein.
• Q is an optionally substituted bivalent group selected from a Q -6 aliphatic group, a 3-7 membered saturated, partially unsaturated, or aryl monocyclic ring having 0-3 heteroatoms independently selected from oxygen, nitrogen, or sulfur, an 8-10 membered saturated, partially unsaturated, or aryl bicyclic ring having 0-5 heteroatoms independently selected from oxygen, nitrogen, or sulfur, a 12-14 membered saturated, partially unsaturated, or aryl tricyclic ring having 0-5 heteroatoms independently selected from oxygen, nitrogen, or sulfur, or an amine- terminal dendritic group;
• R x and R y are each independently a natural or unnatural amino acid side-chain group, wherein R x and R y are different from each other; and each A is a suitable acid anion.
• Q is an optionally substituted bivalent group selected from a Cj. 6 aliphatic group, a 3-7 membered saturated, partially unsaturated, or aryl monocyclic ring having 0-3 heteroatoms independently selected from oxygen, nitrogen, or sulfur, an 8-10 membered saturated, partially unsaturated, or aryl bicyclic ring having 0-5 heteroatoms independently selected from oxygen, nitrogen, or sulfur, a 12-14 membered saturated, partially unsaturated, or aryl tricyclic ring having 0-5 heteroatoms independently selected from oxygen, nitrogen, or sulfur, or an amine- terminal dendritic group;
• R x and R y are each independently a natural or unnatural amino acid side-chain group, wherein R x and R y are different from each other;
• R 2a is a mono-protected amine, a di-protected amine, -NHR 3 , -N(R 3 ) 2 , -NHC(O)R 3 , -NR 3 C(O)R 3 , -NHC(O)NHR 3 , -NHC(O)N(R 3 ) 2 , -NR 3 C(O)NHR 3 ,
• each R 3 is independently an optionally substituted group selected from aliphatic, a 5-8 membered saturated, partially unsaturated, or aryl ring having 0-4 heteroatoms independently selected from nitrogen, oxygen, or sulfur, an 8-10-membered saturated, partially unsaturated, or aryl bicyclic ring naving ⁇ -D nciciu ⁇ iuma independently selected from nitrogen, oxygen, or sulfur, or a detectable moiety, or: two R 3 on the same nitrogen atom are taken together with said nitrogen atom to form an optionally substituted 4-7 membered saturated, partially unsaturated, or aryl ring having 1-4 heteroatoms independently selected from nitrogen, oxygen, or sulfur.
• the block poly(ami ⁇ o acid) compounds of the present invention may be PEGylated. Accordingly, another embodiment of the present invention relates to a compound of formula V:
• Q is an optionally substituted bivalent group selected from a C] -6 aliphatic group, a 3-7 membered saturated, partially unsaturated, or aryl monocyclic ring having 0-3 heteroatoms independently selected from oxygen, nitrogen, or sulfur, an 8-10 membered saturated, partially unsaturated, or aryl bicyclic ring having 0-5 heteroatoms independently selected from oxygen, nitrogen, or sulfur, a 12-14 membered saturated, partially unsaturated, or aryl tricyclic ring having 0-5 heteroatoms independently selected from oxygen, nitrogen, or sulfur, or an amine- terminal dendritic group;
• R x is a natural or unnatural amino acid side-chain group
• each T is independently a valence bond or a bivalent, saturated or unsaturated, straight or branched Ci_ ⁇ 2 alkylene chain, wherein 0-6 methylene units of Q are independently replaced by -Cy-, -O-, -NR-, -S-, -OC(O)-, -C(O)O-, -C(O)-, -SO-, -SO 2 -, -NRSO 2 -, -SO 2 NR-, -NRC(O)-, -C(O)NR-, -OC(O)NR-, or -NRC(O)O-, wherein: each -Cy- is independently an optionally substituted 5-8 membered bivalent, saturated, partially unsaturated, or aryl ring having 0-4 heteroatoms independently selected from nitrogen, oxygen, or sulfur, or an optionally substituted 8-10 membered bivalent saturated, partially unsaturated
• R 4 is hydrogen, halogen, N 3 , CN, a mono-protected amine, a di-protected amine, a protected aldehyde, a protected hydroxyl, a protected carboxylic acid, a protected thiol, or an optionally substituted group selected from aliphatic, a 5-8 membered saturated, partially unsaturated, or aryl ring having 0-4 heteroatoms independently selected from nitrogen, oxygen, or sulfur, an 8-10-membered saturated, partially unsaturated, or aryl bicyclic ring having 0-5 heteroatoms independently selected from nitrogen, oxygen, or sulfur, or a detectable moiety.
• each of the embodiments relating to the R 2 and T groups of formula III apply to the R 2 and T groups of formula V.
• Q is an optionally substituted bivalent group selected from a Ci-6 aliphatic group, a 3-7 membered saturated, partially unsaturated, or aryl monocyclic ring having 0-3 heteroatoms independently selected from oxygen, nitrogen, or sulfur, an 8-10 membered saturated, partially unsaturated, or aryl bicyclic ring having 0-5 heteroatoms independently selected from oxygen, nitrogen, or sulfur, a 12-14 membered saturated, partially unsaturated, or aryl tricyclic ring having 0-5 heteroatoms independently selected from oxygen, nitrogen, or sulfur, or an amine- te ⁇ ninal dendritic group;
• R* is a natural or unnatural amino acid side-chain group; and each R 2 is halogen, N 3 , CN, a mono-protected amine, a di-protected amine, a protected hydroxyl, a protected aldehyde, a protected thiol, -NHR 3 , -N(R 3 ) 2 , -SR 3 , -O(CH 2 CH 2 O) q (CH 2 ) r R 4 , -OC(O)R 3 , or -OS(O) 2 R 3 ; q and r are each independently 0-4; each R 3 is independently an optionally substituted group selected from aliphatic, a 5-8-membered saturated, partially unsaturated, or aryl ring having 0-4 heteroatoms independently selected from nitrogen, oxygen, or sulfur, an 8-10 membered saturated, partially unsaturated, or aryl bicyclic ring having 0-5 heteroatoms independently selected from nitrogen, oxygen, or sulfur, or
• R 4 is hydrogen, halogen, N 3 , CN, a mono-protected amine, a di-protected amine, a protected aldehyde, a protected hydroxyl, a protected carboxylic acid, a protected thiol, or an optionally substituted group selected from aliphatic, a 5-8 membered saturated, partially unsaturated, or aryl ring having 0-4 heteroatoms independently selected from nitrogen, oxygen, or sulfur, an 8-10-membered saturated, partially unsaturated, or aryl bicyclic ring having 0-5 heteroatoms independently selected from nitrogen, oxygen, or sulfur, or a detectable moiety.
• the present invention provides a compound of fromula VI:
• Q is an optionally substituted bivalent group selected from a C 1-6 aliphatic group, a 3-7 membered saturated, partially unsaturated, or aryl monocyclic ring having 0-3 heteroatoms independently selected from oxygen, nitrogen, or sulfur, an 8-10 membered saturated, partially unsaturated, or aryl bicyclic ring having 0-5 heteroatoms independently selected from oxygen, nitrogen, or sulfur, a 12-14 membered saturated, partially unsaturated, or aryl tricyclic ring having 0-5 heteroatoms independently selected from oxygen, nitrogen, or sulfur, or an amine- terminal dendritic group;
• R x and R y are each independently a natural or unnatural amino acid side-chain group, wherein R x and R y are different from each other; each T is independently a valence bond or a bivalent, saturated or unsaturated, straight or branched Ci_i 2 alkylene chain, wherein 0-6 methylene units of Q are independently replaced by -Cy-, -O-, -NR-, -S-, -OC(O)-, -C(O)O-, -C(O)-, -SO-, -SO 2 -, -NRSO 2 -, -SO 2 NR-, -NRC(O)-, -C(O)NR-, -OC(O)NR-, or -NRC(O)O-, wherein: each -Cy- is independently an optionally substituted 5-8 membered bivalent, saturated, partially unsaturated, or aryl ring having 0-4 heteroatoms independently selected from nitrogen, oxygen, or sulfur
• R 4 is hydrogen, halogen, N3, CN, a mono-protected amine, a di-protected amine, a protected aldehyde, a protected hydroxyl, a protected carboxylic acid, a protected thiol, or an optionally substituted group selected from aliphatic, a
• each of the embodiments relating to the Q, m, m', R x and R y groups of formulae II, I-a, and IV apply to the Q, m, m', R x and R y groups of formula VI both singly and in combination.
• each of the embodiments relating to the R 2 and T groups of formula III apply to the R 2 and T groups of formula VI.
• Another embodiment of the present invention relates to a compound of formula VI-a:
• Q is an optionally substituted bivalent group selected from a C 1-6 aliphatic group, a 3-7 membered saturated, partially unsaturated, or aryl monocyclic ring having 0-3 heteroatoms independently selected from oxygen, nitrogen, or sulfur, an 8-10 membered saturated, partially unsaturated, or aryl bicyclic ring having 0-5 heteroatoms independently selected from oxygen, nitrogen, or sulfur, a 12-14 membered saturated, partially unsaturated, or aryl tricyclic ring having 0-5 heteroatoms independently selected from oxygen, nitrogen, or sulfur, or an amine- terminal dendritic group;
• R x and R y are each independently a natural or unnatural amino acid side-chain group, wherein R x and R y are different from each other; and each R 2 is halogen, N 3 , CN, a mono-protected amine, a di-protected amine, a protected hydroxyl, a protected aldehyde, a protected thiol,
• R 4 is hydrogen, halogen, N 3 , CN, a mono-protected amine, a di-protected amine, a protected aldehyde, a protected hydroxyl, a protected carboxylic acid, a protected thiol, or an optionally substituted group selected from aliphatic, a 5- 8-membered saturated, partially unsaturated, or aryl ring having 0-4 heteroatoms independently selected from nitrogen, oxygen, or sulfur, an 8-10- membered saturated, partially unsaturated, or aryl bicyclic ring having 0-5 heteroatoms independently selected from nitrogen, oxygen, or sulfur, or a detectable moiety.
• each of the embodiments relating to the Q, m, m', R x and R y groups of formulae II, I-a, and IV apply to the Q, m, m', R x and R y groups of formula VT-a both singly and in combination.
• each of the embodiments relating to the R 2 group of formula III apply to the R 2 group of formula VI-a.
• the R 1 group of formula I includes amine-terminal dendritic groups.
• Such dendritic R 1 groups are particularly useful for preparing star-block poly(amino acid) copolymers using the methods of the present invention.
• star-block poly(amino acid) copolymers can be synthesized by sequential addition of NCAs to multi-functional amine salt initiators. The number of amine salts on the initiating species dictates the number of polymer arms.
• dendritic cores offer an effective method to make highly branched star polymers.
• Generation I and II polypropyleneimine (DAB-AM) dendrimers are used to make 4 and 8 arm star polymers, respectively.
• DAB-AM dendrimers are used to synthesize 16, 32, and 64 arm star polymers, respectively.
• PAMAM poly(amidoamine) dendrimers
• Examples of such multi-functional initiators include:
• Such multi-functional initiators are useful for preparing star-block poty(amino acid) copolymers using the methods of the present invention.
• the compounds of this invention may be prepared or isolated in general by synthetic and/or pseudo-synthetic methods known to those skilled in the art for analogous compounds and as illustrated by the general schemes that follow.
• Scheme 2 above depicts a general method for preparing compounds of formula II of the present invention.
• Scheme 2 depicts the sequential polymerization of amino acid NCA's for preparing compounds of the present invention having multiple poly(amino acid) blocks.
• Scheme 3 depicts the sequential polymerization of amino acid NCA's for preparing compounds of the present invention having multiple poly(amino acid) blocks.
• Scheme 3 above depicts a general method for preparing compounds of formula IV and IVa from a compound of formula I-a.
• Scheme 4 above depicts a general method for preparing compounds of formula V from a compound of formula IVa by coupling a PEG-carboxylate onto the amine terminal ends of formula IVa.
• the coupling step is performed using a variety of coupling methods. Such methods include, but are not limited to, activated ester formation, acyl halide coupling, and the like.
• Scheme 5 above shows a general method for preparing compounds of the present invention wherein R 1 is an amine-terminal dendritic compound.
• the present invention provides homopolymers or block copolymers, intermediates thereto, and methods of preparing the same.
• Such homopolymers and block copolymers are useful for a variety of purposes in the pharmaceutical and biomedical fields.
• Such uses include using the homopolymers and block copolymers of the present invention, and in certain embodiments, the PEG-poly (amino acid) block copolymers prepared by the methods of the present invention in the process of conjugating other molecules.
• Amphiphilic multi-block copolymers can self-assemble in aqueous solution to form nano- and micron-sized structures, with applications from drug encapsulation to artificial viruses and cells.
• these amphiphilic copolymers assemble by multi-molecular micellization when present in solution above the critical micelle concentration (CMC).
• CMC critical micelle concentration
• the hydrophobic poly(amino acid) portion or "block" of the copolymer collapses to form the micellar core, while the hydrophilic PEG block forms a peripheral corona and imparts water solubility.
• poly(amino acid) blocks capable of chemical crosslinking e.g.
• aspartic and glutamic acid, cysteine, or serine may also be incorporated into the amphiphilic copolymer to further enhance the stability of micellar assemblies.
• These core-shell polymer micelles can be tuned to encapsulate a variety of therapeutic molecules, including small molecule drugs, polypeptides, and polynucleotides.
• small molecule drugs including small molecule drugs, polypeptides, and polynucleotides.
• the compounds prepared by the methods of the present invention are useful for either encapsulating or conjugating small molecule drugs.
• the present compounds are used to PEGylate such drugs.
• Small molecule drugs suitable for PEGylation, conjugation, or encapsulation with the compounds prepared by the methods of the present invention include, without limitation, chemotherapeutic agents or other antiproliferative agents including alkylating drugs (mechlorethamine, chlorambucil, Cyclophosphamide, Melphalan, Ifosfamide), antimetabolites (Methotrexate), purine antagonists and pyrimidine antagonists (6-Mercaptopurine, 5-Fluorouracil, Cytarabile, Gemcitabine), spindle poisons (Vinblastine, Vincristine, Vinorelbine, Paclitaxel), podophyllotoxins (Etoposide, Irinotecan, Topotecan), antibiotics (Doxorubicin, Bleomycin, Mitomycin), nitrosoureas (Carmustine, Lomustine), inorganic ions (Cisplatin, Carboplatin), enzymes (Asparaginase), angiogenesis inhibitors (Avastin
• the pharmaceutically acceptable compositions of the present invention additionally comprise a pharmaceutically acceptable carrier, adjuvant, or vehicle, which, as used herein, includes any and all solvents, diluents, or other liquid vehicle, dispersion or suspension aids, surface active agents, isotonic agents, thickening or emulsifying agents, preservatives, solid binders, lubricants and the like, as suited to the particular dosage form desired.
• a pharmaceutically acceptable carrier, adjuvant, or vehicle which, as used herein, includes any and all solvents, diluents, or other liquid vehicle, dispersion or suspension aids, surface active agents, isotonic agents, thickening or emulsifying agents, preservatives, solid binders, lubricants and the like, as suited to the particular dosage form desired.
• Remington's Pharmaceutical Sciences, Sixteenth Edition, E. W. Martin (Mack Publishing Co., Easton, Pa., 1980) discloses various carriers used in formulating pharmaceutically acceptable compositions
• any conventional carrier medium is incompatible with the compounds of the invention, such as by producing any undesirable biological effect or otherwise interacting in a deleterious manner with any other component(s) of the pharmaceutically acceptable composition, its use is contemplated to be within the scope of this invention.
• compositions of this invention can be administered to humans and other animals orally, rectally, parenterally, intracisternally, intravaginally, intraperitoneally, topically (as by powders, ointments, or drops), bucally, as an oral or nasal spray, or the like, depending on the severity of the infection being treated.
• the compounds of the invention may be administered orally or parenterally at dosage levels of about 0.01 mg/kg to about 50 mg/kg and preferably from about 1 mg/kg to about 25 mg/kg, of subject body weight per day, one or more times a day, to obtain the desired therapeutic effect.

Landscapes

• Chemical & Material Sciences (AREA)
• Health & Medical Sciences (AREA)
• Chemical Kinetics & Catalysis (AREA)
• Medicinal Chemistry (AREA)
• Polymers & Plastics (AREA)
• Organic Chemistry (AREA)
• General Chemical & Material Sciences (AREA)
• Polyamides (AREA)
• Graft Or Block Polymers (AREA)
• Plural Heterocyclic Compounds (AREA)

Applications Claiming Priority (2)

Publications (2)

Family

ID=36793612

Family Applications (1)

Country Status (4)

Families Citing this family (13)

Citations (3)

Family Cites Families (14)

• 2006
  • 2006-02-08 EP EP06720379A patent/EP1848460A4/de not_active Withdrawn
  • 2006-02-08 WO PCT/US2006/004160 patent/WO2006086325A2/en active Application Filing
  • 2006-02-08 CA CA002597378A patent/CA2597378A1/en not_active Abandoned
  • 2006-02-08 US US11/884,219 patent/US20110124840A1/en not_active Abandoned
• 2012
  • 2012-03-13 US US13/418,783 patent/US20120196989A1/en not_active Abandoned

Patent Citations (3)

Non-Patent Citations (3)

Also Published As

Similar Documents

Legal Events