Classifications

• • C—CHEMISTRY; METALLURGY
  • C07—ORGANIC CHEMISTRY
  • C07K—PEPTIDES
  • C07K14/00—Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof
  • C07K14/435—Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof from animals; from humans
  • C07K14/46—Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof from animals; from humans from vertebrates
  • C07K14/47—Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof from animals; from humans from vertebrates from mammals
  • C07K14/4701—Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof from animals; from humans from vertebrates from mammals not used
  • C07K14/4748—Tumour specific antigens; Tumour rejection antigen precursors [TRAP], e.g. MAGE
• • A—HUMAN NECESSITIES
  • A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
  • A61K—PREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
  • A61K38/00—Medicinal preparations containing peptides
  • A61K38/16—Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof
  • A61K38/17—Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof from animals; from humans
  • A61K38/1703—Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof from animals; from humans from vertebrates
  • A61K38/1709—Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof from animals; from humans from vertebrates from mammals

Definitions

• This invention relates to modified peptides that bind to MHC molecules and also promote an immunological response by cytolytic T cells (CTLs).
• CTLs cytolytic T cells
• the modified peptides are capable of activating CTLs that recognize the peptides in their unmodified form.
• the modified peptides display an enhanced resistance to proteases and an enhanced ability to stimulate CTLs as compared to the unmodified peptide.
• the modified peptides are useful in many ways, e.g., as immunogens and as materials which target and bind MHC/HLA molecules.
• T-lymphocytes Antigen recognition by the T-lymphocytes is restricted by cell-surface glycoproteins encoded by the highly polymorphic genes of the major histocompatibility complex (MHC) molecules.
• MHC major histocompatibility complex
• This discrimination requires a T cell specific for a particular combination of an MHC/HLA molecule and a peptide of the antigen rather than the intact foreign antigen itself. If a specific T cell is not present, there is no T cell response even if its partner MHC/peptide complex is present. Similarly, if the T cell is present but the specific MHC/peptide complex is absent, there is no T cell response.
• T cell immunity is controlled by two selective and independent binding events: first, binding of the peptide fragments of the antigens by the MHC class molecules, and second, binding of the resulting complexes by the clonotypic antigen receptors of the T cell.
• first, binding of the peptide fragments of the antigens by the MHC class molecules, and second, binding of the resulting complexes by the clonotypic antigen receptors of the T cell See, in this regard, Ada, Immunology and Cell Biology 72:447-454 (1994).
• MHC class I molecules are expressed by almost all nucleated cells of the body and present peptides, usually 8 to 11 amino acids derived from intracellular proteins, to cytotoxic T cells expressing the CD8 co-receptor. See Roitt, et al. Immunology (Mosby- Year Book Europe, 1993). Activation of the cytotoxic T cell, in turn, results in the destruction of the target cells by apoptosis induced by perforin/granzyme and/or Fas ligand.
• Tumor antigens are characteristic of tumor tissue and thus may be considered tissue specific. Tumor antigens result from alterations that frequently occur in malignant transformation of normal tissue. The alteration may be quantitative in that a particular normal antigen may decrease or increase in concentration, or the alteration may be qualitative in that a new antigen may appear. Normal antigens that have increased concentration in tumors are generally referred to as "Tumor Associated Antigens” or "TAAs". A new antigens, foreign to the host are termed "Tumor-Specific Antigens" or “TSAs” and may be present as new cell-surface structures or as new intracellular structures in the cytoplasm or nucleus.
• TAAs Tumor-Specific Antigens
• Tumor specific antigens were first clearly demonstrated in mice that had been immunized with cells from a methylcholanthrene-induced sarcoma taken from syngeneic mice. These molecules were "recognized” by T cells in the recipient animal, and provoked a cytolytic T cell ("CTL” hereafter) response with lysis of the transplanted cells. The antigens expressed by the tumors and which elicited the T cell response were found to be different for each tumor. See Prehn, et al., J. Natl. Cane. Inst. 18: 769-778 (1957); Klein et al., Cancer Res. 20: 1561-1572 (1960); Gross, Cancer Res. 3: 326-333 (1943), Basombrio, Cancer Res.
• TTAs Tumor Specific Transplantation Antigens
• tum " antigen presenting cell lines are immunogenic variants obtained by mutagenesis of mouse tumor cells or cell lines, as described by Boon et al., J. Exp. Med. 152: 1184-1193 (1980), the disclosure of which is incorporated by reference.
• tum " antigens are obtained by mutating tum + tumor cells. Tum+ cells do not generate an immune response in syngeneic mice and will form tumors (i.e., "tum+” cells). When these tum+ cells are mutagenized, they are rejected by syngeneic mice, and fail to form tumors (thus "turn " "). See Boon et al., Proc. Natl. Acad. Sci. USA 74: 272 (1977), the disclosure of which is incorporated by reference. Many tumor types have been shown to exhibit this phenomenon. See, e.g., Frost et al., Cancer Res. 43: 125 (1983).
• tum " variants fail to form progressive tumors because they elicit an immune rejection process.
• the evidence in favor of this hypothesis includes the ability of "rum " " variants of tumor cells, i.e., those which do not normally form tumors, to do so in mice with immune systems suppressed by sublethal irradiation, Van Pel et al., Proc. Natl, Acad. Sci. USA 76: 5282-5285 (1979); and the observation that intraperitoneally injected tum * cells of mastocytoma P815 multiply exponentially for 12-15 days, and then are eliminated in only a few days in the midst of an influx of lymphocytes and macrophage (Uyttenhove et al., J. Exp. Med.
• mice acquire an immune memory which permits them to resist subsequent challenge to the same tum " variant, even when immunosuppressive amounts of radiation are administered with the following challenge of cells (Boon et al., Proc. Natl, Acad. Sci. USA 74: 272-275 (1977); Van Pel et al., supra; Uyttenhove et al., supra). Later research demonstrated that when spontaneous tumors were subjected to mutagenesis, immunogenic variants were produced which did generate a response. Indeed, these variants were able to elicit an immune protective response against the original tumor. See Van Pel et al., J. Exp. Med. 157: 1992-2001 (1983).
• TRAs may or may not induce antibodies and have been studied by characterizing the response of cytolytic T cell in vitro, i.e., by analyzing the recognition of the TRA by a particular cytolytic T cell subset. The subset proliferates upon recognition of the presented TRA, and the cells presenting the TRA are lysed. Characterization studies have identified CTL clones which specifically lyse cells expressing the antigens. Examples of this work may be found in Levy et al., Adv. Cancer Res. 24: 1-59 (1977); Boon et al., J. Exp. Med. 152: 1184-1193 (1980); Brunner et al., J. Immunol.
• a tumor exemplary of the subject matter described supra is known as P815. See DePlaen et al., Proc. Natl. Acad. Sci. USA 85: 2274-2278 (1988); Szikora et al., EMBO J 9: 1041-1050 (1990), and Sibille et al., J. Exp. Med. 172: 35-45 (1990), the disclosures of which are incorporated by reference.
• the P815 tumor is a mastocytoma, induced in a DBA/2 mouse with methylcholanthrene and cultured as both an in vitro tumor and a cell line.
• the P815 line has generated many tum " variants following mutagenesis, including variants referred to as P91A (DePlaen, supra), 35B (Szikora, supra), and PI 98 (Sibille, supra).
• the tum " antigens are only present after tumor cells are mutagenized. TRAs are present on tumor cells without mutagenesis.
• a cell line can be tum+, such as the line referred to as "PI", and can be provoked to produce tum variants. Since the tum phenotype differs from that of the parent cell line, one expects a difference in the DNA of tum " cell lines as compared to their tum+ parental lines, and this difference can be exploited to locate the gene of interest in tum " cells. As a result, it was found that genes of tum " variants such as P91A, 35B and PI 98 differ from their normal alleles by point mutations in the coding regions of the gene. See Szikora and Sibille, supra, and Lurquin et al., Cell 58: 293-303 (1989).
• the TRAs are expressed on cell surfaces and lead to lysis of the tumor cells by specific cytolytic T lymphocytes. See Traversari et al., Immunogenetics 35: 145 (1992); van der Bruggen et al., Science 254: 1643 (1991), for further information on this family of genes. Also, see U.S. Patent No. 5,342,774,which discloses the "MAGE" family of tumor rejection antigen precursors, and U.S. Patent No. 5,405,940, PCT US93/07421; Falk et al., Nature 351 : 290-296 (1991); Engelhard, Ann Rev. Immunol.
• melanoma antigens that are recognized by cytolytic T cells are now divided into three broad categories.
• the first which includes many of the antigens discussed supra (e.g., MAGE), are expressed in some melanomas, as well as other tumor types, and normal testis and placenta.
• the antigens are the expression product of normal genes which are usually silent in normal tissues.
• a second family of melanoma antigens includes antigens which are derived from mutant forms of normal proteins. Examples of this family are MUM-1 (Coulie, et al.,
• a third category also discussed, supra, includes the differentiation antigens which are expressed by both melanoma and melanocytes.
• exemplary are tyrosinase gplOO, gp75, and Melan A/Mart-1.
• U.S. Patent No. 5,620,886 incorporated by reference, with respect to Melan-A See W ⁇ lfel, et al., Eur. J. Immunol. 24: 759 (1994) and Brichard, et al., Eur. J. Immunol. 26: 224 (1996) for tyrosinase; Kang, et al., J. Immunol.
• CTLs have been identified in peripheral blood lymphocytes and tumor infiltrating lymphocytes of melanoma patients who are HLA-A*0201 positive. See Kawakami, et al., Proc. Natl. Acad. Sci. USA 91 :3515 (1994); Coulie, et al., J. Exp. Med. 180:35 (1994).
• the majority of peptides which have been identified as binding to HLA-A*0201 are 9 or 10 amino acids in length, and are characterized by two anchor residues. The first is Leu or Met at position 2, and the second is Leu or Val at position 9.
• Ruppert, et al., Cell 74:929 (1993) show that amino acids found at other positions within a nona-or decapeptide may also have a role in the peptide -HLA- A*0201 interaction. They demonstrate, e.g., that a negatively charged residue or proline at position 1 was associated with poor HLA-A*0201 binding.
• a strong binder is not necessarily a stable binder, meaning that the interaction between peptide and HLA molecule may be, and is, brief.
• CTLs to identify them or to carry out other types of experiments, it would be desirable to have a peptide with the ability to bind to an MHC Class I molecule with high affinity and form stable complexes.
• CTL cytotoxic T lymphocytes
• Melan-A/MART-1 (MelanA thereafter) is a member of the differentiation tumor associated antigens group. It is expressed in melanomas as well as in normal melanocytes but not in other normal cells.
• Melan-A 27-35 (AAGIGILTV, SEQ ID NO: 1) or Melan-A 26-
• E AAGIGILTV SEQ ID NO: 2
• TILN tumor infiltrated lymph nodes
• TIL tumor infiltrating lymphocytes
• Valmori et al. SEQ ID NO: 3
• Valmori et al. J. Immunol. 1998, 160 : 1750-1758
• Described herein are modified analogs of the tumor antigen Melan-A2 6- 35 A27L that are resistant to peptidase degradation and retain the biological properties of the parental peptide.
• This invention relates to a fine analysis of the molecular proteolytic degradation mechanism of a tumor associate antigen particularly a Melan-A peptide, Melan A 26-35 A27L peptide, in human serum.
• This invention also relates to structurally modified analogs of tumor associated antigens, particularly Melan A/Mart-1 peptides.
• the modified peptides of this invention are resistant to proteolytic degradation and yet do not display a loss or substantial reduction in the immunological properties displayed by the corresponding parental peptide. Described herein is the synthesis of the modified peptides and an analysis of their resistance to proteolysis, their capacity to be presented by MHC molecules (measurement of MHC binding affinity), particularly an HLA-A*0201, their antigenicity (ability to provoke lysis of target cells by CTLs which recognize the parental peptide in complex with the MHC molecule, e.g., the ability to provoke lysis of target cells by Melan- A 26-35 A27L-specif ⁇ c cytolytic T lymphocytes) and their immunogenicity (ability to generate specific CTL capable of recognizing the non- modified parental peptide and tumor cells that naturally express the tumor associated antigen, e.g., a Melan-A antigen) as compared to that of the parental peptide.
• MHC molecules measure of MHC binding affinity
• HLA-A*0201 antigenic
• the structurally modified peptides of this invention are resistant to proteolysis, particularly proteolysis by amino- and dipeptidyl-carboxy-peptidase (ACE : angiotensin- converting enzyme sub-family).
• ACE amino- and dipeptidyl-carboxy-peptidase
• the modified peptides of this invention display a minimal reduction in the immunological properties of the peptide in its non- modified form.
• the modified peptide is a modified Melan A peptide, e.g., a modified Melan A 27-3 5 or a modified Melan A 26-35 peptide. More preferably the modified peptide is a modified Melan-A 6-35 A27L peptide.
• Resistance to proteolysis may be manifested as an extended half life in human serum.
• the peptides have a half life in human serum of at least 12 hours. More preferably the peptides of this invention have a half life of at least about 24 hours.
• the peptides are mono-substituted at one of amino acid positions 1, 2, 8, 9 or 10, preferably at the amino acid position 1 or 2.
• the peptides of this invention comprise two or more modified amino acids at positions 1, 2, 8, 9 or 10.
• the peptides may be modified at (a) at least one of position 1 or 2 and (b) at least one of positions 8, 9 or 10.
• the modification of the peptide is preferably one that renders the peptide resistant to proteolysis in serum, particularly human serum, as compared to the non-modified peptide.
• the modified peptide comprises an amino acid modified at the alpha carboxy, the alpha amino or the peptide bond at amino acid positions 1, 2, 8, 9 or 10, e.g., the amino acid a ⁇ -amino acid, e.g., ⁇ -alanine or ⁇ -glutamic acid, a D-amino acid (d-a.a.), or a cyclic amino acid, e.g., a pyro-glutamic a.a., or an amino acid with a methylation of an ⁇ carboxy ( ME -peptide), methylation of a nitrogen engaged in peptidic bond formation
• the modified peptide may also comprise one or more non-peptide bonds, e.g., a reduced peptide bond ( ⁇ ] -2 (CH 2 -NH) or a retro-inverso peptide bond ( ⁇ - (CO-NH 2 )).
• the amino acid is one having ⁇ Me modification .
• the modified peptide may substitute an amino acid at position 1, 2, 8, 9 or 10 in the parental peptide.
• the peptides of this invention comprise a modification of an amino acid at position 1, 2, 8, 9 or 10, e.g., both one or more modified amino acid at position one or two, and one or more modified amino acid at position 8, 9 or 10.
• the peptides of this invention may comprise a modification of a peptide bond between amino acids 1 and 2 or between amino acids at positions 8 and 9 or 9 and 10.
• the peptide bond modified is the bond between amino acids at position 1 and 2 or positions 8 and 9.
• the modification is a methylation of an ⁇ carboxy ( ⁇ ME -peptide) methylation of a nitrogen engaged in peptidic bond formation (NMe-peptide), acetylation of a terminal nitrogen (acetyl peptide), amidation of a terminal carboxylic group (amide- peptide), reduced bond ( ⁇ -2 (CH 2 -NH), ⁇ -amino acid ( ⁇ aa), e.g., ⁇ -alanine, ⁇ -glutamic acid, D-amino acid (d-aa), hydroxylation of a terminal nitrogen (NOH-peptide), retro- inverso peptide bond ( ⁇ -2 (CO-NH 2 ), and cyclic amino acid, e.g., pyro-glutamic a.a..
• the peptides of this invention containing modified amino acids, particularly at one of positions 1, 2 8, 9 or 10 display very similar HLA binding and CTL recognition compared to the non-modified parental peptide.
• the HLA is an HLA-A *0201 molecule.
• the peptides of this invention consist of an amino acid sequence selected from the group consisting of SEQ ID NO: 13, SEQ ID NO: 14, SEQ HD NO: 15, SEQ ID NO: 16, SEQ HD NO: 17, SEQ ID NO: 32, SEQ ID NO: 33, SEQ ID NO: 34, SEQ ID NO: 35, SEQ ID NO: 36, SEQ HD NO: 37, SEQ HD NO: 38, SEQ ID NO: 39, SEQ HD NO: 40, SEQ HD NO: 41, SEQ ID NO: 42 and SEQ HD NO: 43
• Immunogenicity may be assayed by a variety of methods routinely used by one of skill in the art.
• the immunogenicity of the peptides may be assayed in vitro by their ability to stimulate peripheral blood lymphocytes.
• the peripheral blood lymphocytes are preferably from healthy HLA-A*0201+ donors.
• the level of stimulation may be determined using any number of well-known assays, e.g., by flow cytometry analysis wherein the peptides are assayed for their ability to induce an increase in the number of cells specific for the modified or non-modified parental peptide.
• T cells specific for the modified peptides of this invention may also be assayed in vitro for expansion of their cytolytic activity.
• the CTLs induced with the modified peptides of this invention are able to recognize the non-modified parental peptide, e.g. Melan A 26-35 A27L, and lyse tumor cell line that present the natural peptide, e.g., Melan
• CTLs which recognize the modified peptides and also recognize the non-modified parental peptide.
• the CTLs recognized the modified Melan A peptides of this invention, the parental Melan A peptide, and the natural Melan A peptide. More preferably the CTLs recognize the modified peptides of this invention, in addition to Melan A 26- 35 A27L and Melan A 26 - 35 -
• a further embodiment of this invention is a composition comprising the peptides of this invention and a pharmaceutically acceptable carrier.
• a pharmaceutically acceptable carrier Any pharmaceutical carrier well known in the art is suitable.
• the peptide is a modified Melan A peptide, more preferably a Melan A 26-35 or Melan A 27-35 peptide and most preferably a modified
• Still another embodiment of this invention is a method of stimulating a response from a CTL specific for a complex of Melan A and an MHC molecule, particularly an HLA-A 0*0201 molecule.
• the methods comprise contacting a sample of cells containing CTL precursors with a peptide of this invention, wherein the amount of the peptide is sufficient to form a complex with an MHC molecule expressed on the surface of a cell, and provoke a response by CTLs specific for the complex of peptide and the MHC molecule.
• the stimulated CTL cells lyse cells presenting a complex of the peptide and the MHC molecule.
• the peptide is a modified Melan A 26-35 A27L peptide wherein at least one of amino acids at positions 1 or 2 is modified.
• the peptide comprises one or more modified amino acids at position 1 or 2 and one or more modified amino acids at positions 8, 9, or 10.
• an amino acid at position 1 or 2 and an amino acid at position 8, 9 or 10 is modified or the peptide bond between amino acids 8 and 9 is modified.
• cytolytic T cell lines which are specific for complexes of these peptides and their MHC binding partner, i.e., an HLA molecule, such as an HLA-A2 molecule, HLA-A*0201 being especially preferred.
• HLA-A2 positive cells such as HLA-A*0201 positive cells
• HLA-A*0201 positive cells by determining whether or not the peptides bind to cells in a sample.
• This "ligand/receptor" type of reaction is well known in the art, and various methodologies are available for determining it.
• the peptides may be combined with peptides from other tumor rejection antigens to form 'polytopes'.
• Exemplary peptides include those listed in U.S. Patent Application Serial Numbers 08/672,351, 08/718,964, now U.S. Patent No. 5,932,694 , 08/487,135 now U.S. Patent No. 5,821,122, 08/530,569 and 08/880,963, now U.S. Patent No. 6,025,470, 08/795,733, now U.S. Patent No. 6,087,441, all of which are incorporated by reference.
• Polytopes are groups of two or more potentially immunogenic or immune stimulating peptides, which can be joined together in various ways, to determine if this type of molecule will stimulate and/or provoke an immune response. These peptides can be joined together directly, or via the use of flanking sequences. See Thompson et al., Proc. Natl. Acad. Sci. USA 92(13): 5845-5849 (1995), teaching the direct linkage of relevant epitopic sequences. The use of polytopes as vaccines is well known. See, e.g. Gilbert et al., Nat. Biotechnol. 15(12): 1280-1284 (1997); Thomson et al., supra; Thomson et al., J. Immunol.
• the Tarn reference in particular shows that polytopes, when used in a mouse model, are useful in generating both antibody and protective immunity. Further, the reference shows that the polytopes, when digested, yield peptides which can be and are presented by MHCs. Tarn shows this by showing recognition of individual epitopes processed from polytope 'strings' via CTLs. This approach can be used, e.g., in determining how many epitopes can be joined in a polytope and still provoke recognition and also to determine the efficacy of different combinations of epitopes.
• polytopes can be introduced as polypeptide structures, or via the use of nucleic acid delivery systems.
• the art has many different ways available to introduce DNA encoding an individual epitope, or a polytope such as is discussed supra. See, e.g., Allsopp et al., Eur. J. Immunol. 26(8); 1951-1959 (1996), incorporated by reference.
• Adenovirus, pox-virus, Ty-virus like particles, plasmids, bacteria, etc. can be used.
• a feature of the invention is the use of these peptides to determine the presence of cytolytic T cells in a sample. It was shown, supra, that CTLs in a sample will react with peptide/MHC complexes. Hence, if one knows that CTLs are in a sample,
• HLA-A2 positive cells can be "lysed” by adding the peptides of the invention to HLA-A2 positive cells, such as HLA-A*0201 positive cells, and then determining, e.g., radioactive chromium release, TNF production, etc. or any other of the methods by which T cell activity is determined.
• HILs tumor infiltrating lymphocytes
• one can determine whether or not specific tumor infiltrating lymphocytes ("TILs”) are present in a sample by adding one of the claimed peptides with HLA-A2 positive cells to a sample, and determining lysis of the HLA-A2 positive cells via, e.g., 51Cr release, TNF presence and so forth.
• CTL may be detected by ELISPOT analysis.
• the peptides may also be used to provoke production of CTLs.
• CTL precursors develop into CTLs when confronted with appropriate complexes. By causing such a "confrontation" as it were, one may generate CTLs. This is useful in an in vivo context, as well as ex vivo, for generating such CTLs.
• compositions which comprise at least one of the peptides of the invention, in combination with at least one additional agent, e.g., an adjuvant.
• additional agent e.g., an adjuvant.
• Such compositions can be used, e.g., to generate immune responses, preferably in humans, as part of a therapeutic regime, but also in subject non-human animals, to generate immune components which can then be used to treat humans, or diagnostically.
• the artisan of ordinary skill is familiar with such adjuvants, and thus these do not have to be set forth here.
• compositions can also include so-called co-stimulatory molecules.
• co-stimulatory molecules are molecules which are proteins, or encode proteins, that interact with molecules on the surface of T cells, thereby co-stimulating a T cell already stimulated by formation of an MHC molecule/antigen/T cell receptor interaction.
• co-stimulatory molecules enhance antitumor immunity, and CTL proliferation.
• Exemplary of such co-stimulatory molecules are those known as "B7-1" and "B7-12,” or CD80 and CD86, respectively. See Zhang, et al., Proc. Natl. Acad. Sci. USA 95(11):6284-6289 (1998), incorporated by reference.
• co-stimulatory molecules can be combined with, e.g. interleukins, such as
• the co-stimulatory molecules may be administered in the form of a nucleic acid molecule.
• a nucleic acid molecule Such an approach can be useful in connection with CTL expansion for adoptive transfer immunotherapy (Wang et al., J. Immunother. Emphasis Tumor Immunol. 19:1-8 (1996)).
• the requisite nucleic acid molecules can be administered in the form of "naked" DNA (Kim et al, Nat. Biotechnol 15(7):641-646 (1997)), as well as in the form of recombinant vectors, such as adenovirus and pox virus vectors.
• Figure 1 depicts the recognition of the Melan-A 26-35 A27L modified analogs by specific CTL raised against Melan-A 26-35 A27L.
• the symbols used are: A Melan-A 27-35 (AAGIGILTV, SEQ HD NO: 1), • Melan-A 26-35 (EAAGIGILTV, SEQ HD NO: 2), ⁇ Melan- A 26-35 A27L (ELAGIGILTV, SEQ ID NO: 3), 0 [ ⁇ MeL2, V10-amide]-Melan-A 26- 35 A27L (SEQ ID NO:14), o[ ⁇ MeL2, ⁇ MeL8] -Melan- A 26-35 A27L (SEQ HD NO:13), ⁇ [ ⁇ Al, ⁇ 8-9 (CH2-NH)]-Melan-A 26- 3 5 A27L (SEQ HD NO: 17), D [ ⁇ MeL2, NMeT9]- Melan-A 26 . 35 A27L (SEQ HD NO:
• Figure 2 depicts the mmunogenicity of the Melan- A 26 - 35 A27L modified analogs. * : Melan-A designation correspond to modified peptide of Melan- A 26-35 A27L antigen.
• Figure 3 depicts the recognition of tumor cells by CTL generated with the Melan- A 26-35 A27L non-natural modified analogs.
• Figure 4 depicts the recognition of Melan- A 26-35 by the CTL generated with the
• Figure 5 depicts the recognition of tumor cells by CTL generated with the Melan- A 26-35 A27L modified analogs.
• Figure 6 depicts the antigenic specificity and tumor recognition of CTL induced with the modified Melan-A 26 . 35 A27L analogs.
• Fig. 6A is a dot plot representation of cytometry analysis of culture after in vitro stimulation with Melan-A 26-35 A27L.
• Fig 6 B1-B8 depicts Melan-A antigenic peptide recognition by the modified Melan-A analogs- specific CTL.
• Fig. 6 C1-C8 depicts tumor cell line recognition by the modified Melan-A analogs specific CTL.
• the Melan-A analog used for in vitro stimulation is indicated before the B and C series of figures.
• peptides in specific immunotherapy offers a number of advantages, especially a specific response and a low toxicity.
• a severe limitation to the use of peptides as efficient therapeutic agents is their high sensitivity to proteolytic degradation in biological fluids or tissues.
• the first step consisted in the fine analysis of the molecular proteolytic degradation mechanism of Melan- A 26-35 A27L in human serum.
• the second step was the synthesis of the structurally modified analogs based on the knowledge of the degradation process of Melan-A and evaluation of their efficient resistance to peptidase activities.
• Non-natural modified Melan-A peptides [ ⁇ MeL2, ⁇ MeL8]- Melan-A and [ ⁇ MeL2, amide]-Melan-A which are fully resistant to degradation by proteases and retain the potent immunogenicity of the parental peptide, Melan A 26 -3 5 A27L.
• Specific cytolytic T lymphocytes (CTL) induced by the modified Melan-A peptides [ ⁇ MeL2, ⁇ MeL8] -Melan-A and [ ⁇ MeL2, amide] -Melan-A were able to recognize efficiently the parental peptide and tumor cell lines that naturally express the Melan-A antigen.
• Some of the structural modifications decreased biological properties of the antigen.
• the CTL induced with the modified Melan-A analogs not only recognized cells presenting the modified Melan A 26-35 A27L analog but also recognized the parental peptide and lysed tumor cell lines that naturally express Melan-A antigens.
• Tumor cell line Me 290 HLA-A*0201+, Melan-A+
• Me 275 HLA- A*0201+, Melan- A+
• the melanoma cell line NA8 do not express Melan-A gene (HLA-A*0201+, Melan-A-).
• T2 cells is an HLA-A*0201+ human T/B-cell hybrid which are peptide transporter deficient were cultured in DMEM 10% FCS supplemented with 0.55mM Arg, 0.24mM Asn and 1.5mM Gin.
• Melan-A specific CTL used for the recognition studies were a polyclonal monospecific line derived form patient LAU203 after in vitro stimulation of PBL with the peptide Melan- A 26-35 A27L.
• the tyrosinase specific CTL clone 156/34 was derived after in vitro stimulation of TIL from patient LAU 156 with the natural tyrosinase 368 . 376 peptide (Tyr Met Asp Gly Thr Met Ser Gin Val, YMDGTMSQV, SEQ ID NO: 46).
• Peptides were manually synthesized by the solid-phase method on an using the Fmoc chemistry and DIPC/HOAt (N, N diispropylcarbodiimmide / N-hydroxyaza- benzotiazole) coupling procedure.
• the reduced bond ⁇ (CH 2 -NH) (see Table IA and IIA) was formed by the reductive alkylation of a free amino group with a Fmoc protected amino aldehyde preformed according to the method developed by Fehrentz and Laubol (Fehrentz and Laubo, 1983, Synthesis, 676-678). Peptides were purified by reverse-phase high-pressure liquid chromatography (RP-HPLC) on a C8 column (Aquapore (Brownlee)). Peptides were used at a purity > 98%. Identity of the purified peptides was confirmed by mass spectrometry using electrospray ionisation (ESI-MS). Peptide stock solutions were made at a peptide concentration of 10-3 M in 100 % dimethylsulfoxyde (DMSO), and stored at -20°C.
• RP-HPLC reverse-phase high-pressure liquid chromatography
• ESI-MS electrospray ionisation
• N-terminal-hydroxy peptides were synthesized according to a previous study
• Double-protected analogs [ ⁇ MeL2, ⁇ MeL8]-Melan-A E-[ ⁇ Me]-LAGIGI-[ ⁇ MeL]-TV 0.18 [ ⁇ MeL2, V10-amide]-Melan-A E-[ ⁇ Me]-LAGIGILTV-[CONH 2 ] p, >1000 p 2 100 ' Pi 2.5 p 2 0.1 [ ⁇ MeL2, NMeT9]-Melan-A E-[ ⁇ Me]-LAGIGIL-[NMeT]-V 500 0.5 [ ⁇ MeL2, dT9]-Melan-A E-[ ⁇ Me]-LAGIGIL-[dT]-V 90 10.5 [ ⁇ Al, ⁇ 8-9 (CH 2 -NH)]-Melan-A ⁇ ALAGIGIL-[ ⁇ (CH 2 -NH)]-TV 20 0.35
• Competitor activity was measured on the basis of the inhibition of recognition of the tyrosinase3 6 8-37 6 (YMDGTMSQV, SEQ HD NO: 46) antigenic peptide in the context of HLA-A*0201 by the tyrosinase peptide-specific CTL clone 156/34.
• YMDGTMSQV SEQ HD NO: 46
• Competitor activity was measured on the basis of the inhibition of recognition of the tyrosinase 368- 3 76 (YMDGTMSQV, SEQ HD NO:46) antigenic peptide in the context of HLA-A*0201 by the tyrosinase peptide-specific CTL clone 156/34.
• YMDGTMSQV SEQ HD NO:46
• SEQ HD NO:46 SEQ HD NO:46
• SEQ HD Nos (from top to bottom) 1, 2, 3, 44, 45, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40,
• a and C indicate efficient amino terminal and carboxy terminal protection respectively.
• peptides were prepared in solution in 10 % DMSO at 10 "
• the sequences of the degradation fragments were determined and quantified by on-line RP-HPLC/ESI-MS.
• the following HPLC conditions were used : - i) column : 4.6 mm x 25 cm, C18 (Beckman), - ii) gradient : 5 - 60 % CH 3 CN (0.08 % TFA in H2O, 0.08 % TFA in CH3CN), 0-30 min, - iii) UV detection : 215 nm using a Waters detector, - iv) flow : 0.8 ml/min.
• RIC Reconstructed Ion Cu ⁇ ent
• Table IIIB Stability in human serum of the non-natural Melan-A26-35 A27L analogues.
• the peptide binding capacity to HLA-A*0201 was assessed in a functional competition assay based on inhibition of recognition of the antigenic peptide tyrosinase 368-376 (YMDGTMSQV, SEQ HD NO: 46) by the HLA-A*0201 -restricted CTL clone 156/34.
• Various concentrations of competitor peptides 50 ⁇ l were incubated with 51Cr-labeled T2 cells (50 ⁇ l) (1000 cells/well) for 15 min at room temperature.
• a suboptimal dose (1 nM) of the antigenic peptide tyrosinase 3 8 were assessed in a functional competition assay based on inhibition of recognition of the antigenic peptide tyrosinase 368-376 (YMDGTMSQV, SEQ HD NO: 46) by the HLA-A*0201 -restricted CTL clone 156/34.
• Various concentrations of competitor peptides
• the ability of the structurally modified analogs to bind to HLA-A*0201 was assayed and compared to the parental peptide, Melan-A 6-35 A27L. As shown in Table IA, all the modified resistant peptides display reduced affinity for HLA-A*0201 compared to the peptide Melan-A 26-35 A27L. However, the decrease of HLA-A*0201 binding is not similar for all the analogs.
• the modified analog [ ⁇ MeL2, NMeT9]-Melan- A 26-35 A27L displays an important reduction of HLA-A*0201 binding (IC 50 500nM).
• peptides [ ⁇ MeL2, ⁇ MeL8] -Melan- A 26-35 A27L (IC 50 9nM) or [ ⁇ Al, ⁇ 8 _ 9 (CH 2 -NH)]-Melan-A 26 -35 A27L (IC 50 20nM) have an HLA-A*0201 affinity relatively close to that of the Melan- A 26-35 (IC 50 9nM) or Melan- A 26-35 A27L peptide (IC 50 2nM).
• peptides of this invention having a single modification have a very similar HLA-A*0201 binding compared to Melan-A 26-35 A27L (IC 50 2nM), ([ ⁇ E]-Melan-A IC 50 2nM, [NOH-G1]- Melan-A IC 50 0.6nM, [ ⁇ MeL8]-Melan-A IC 50 4nM) (Table IB).
• Target cells T2 cells
• T2 cells were labeled with 51 Cr for lh at 37°C and washed three times.
• Labeled target cells 1000 cells in 50 ⁇ l
• a polyclonal CTL line specific for Melan-A 26-35 A27L was used as effector cells and was then added (5000 cells in lOO ⁇ l) at a defined effector to target cell ratio.
• the peptides (Table 1A) were tested for their capacity to sensitize target cells to lysis by Melan-A 26-35 A27L specific CTL and compared with that of Melan-A 27-35 , Melan- A 26-35 , and Melan- A 26-35 A27L.
• Figure 1 depicts the recognition of the Melan- A 2 - 3 A27L modified analogs by specific CTL raised against Melan-A 26-35 A27L.
• the recognition of non-natural Melan-A analogs by Melan-A specific CTL is evaluated by chromium release assay.
• the target cells use is the HLA-A2+ T2 cells and the ratio effector-target is 10/1.
• the CTL raised against Melan-A are derived from a polyclonal culture.
• Two peptides, [ ⁇ Al, ⁇ 8 _ 9 (CH 2 -NH)]-Melan-A 26- 35 A27L and [ ⁇ MeL2, NMeT9] -Melan- A 26-35 A27L are able to trigger the lysis of target cells by Melan-A specific CTL in a range of concentration comparable to that of the parental decapeptide Melan-A 26-35 .
• the modified peptides [ ⁇ MeL2, ⁇ MeL8]-Melan-A2 6- 3 5 A27L and [ ⁇ MeL2, amide] -Melan- A 6-35 A27L are more efficiently recognized by Melan A 26-35 A27L-specific CTL than the parental decapeptide Melan-A 26 - 35 .
• the two peptide analogs [ ⁇ MeL2, ⁇ MeL8]-Melan-A 26-35 A27L and [ ⁇ MeL2, amide] -Melan- A 26-35 A27L that were best recognized by CTLs were selected for further immunogenicity experiments.
• Peripheral blood lymphocytes from HLA-A*0201+ healthy donors were isolated by centrifugation in Ficoll-Paque (Pharmacia, Uppsala, Sweden).
• CD8+ lymphocytes were isolated by positive selection magnetic cell sorting using a miniMACS device (Miltenyi Biotec GmBH, Sunnyvale, CA). The resulting population routinely contained >75% CD8+ T cells and were used as responder cell populations.
• Purified CD8+ T cells were plated at 1 x 10 6 cells/well together with 2 x 10 6 stimulator cells/well in 24-well plates in a total volume of 2 ml of Iscove's medium supplemented with 8 % of human serum, Asn, Arg, and Gin (complete medium) in the presence of IL-7 (10 ng/ml), IL-2 (10 U/ml) and l ⁇ M of stimulating peptide .
• Stimulator cells were prepared as follows : 2 x 10 6 cells derived from CD8- population after miniMACS CD8+ lymphocyte isolation were i ⁇ adiated (3000 rad) and adjusted to the appropriate volume before addition to the CD8+-enriched responder cell population.
• T2 cells were restimulated with peptide-pulsed T2 cells.
• T2 cells were incubated for 2h at 37°C serum-free medium (X-VIVO 10; BioWhittaker) with the appropriate stimulating peptide (1 ⁇ M) and human ⁇ 2 microglobulin (3 ⁇ g/ml).
• Peptide pulsed T2 cells were washed, i ⁇ adiated (10 OOOrad) adjusted to appropriate volume of complete medium supplemented with IL-7 (lOng/ml), IL-2 (lOU/ml) and added to the lymphocyte culture (2 x 10 5 cells/well).
• Subsequent restimulations were performed weekly with peptide pulsed T2 cells.
• CTL activity was first tested at the end of the first restimulation using ELIspot assay for IFN ⁇ production by peptide reactive CTL.
• the immunogenicity of the modified Melan-A analogs was addressed in experiments of in vitro stimulation of PBL from healthy donors. In these experiments, the ability of different peptide analogs to drive the activation and expansion of antigen- specific T lymphocyte precursors was assayed. Typically, purified CD8 + T lymphocytes were stimulated twice and the magnitude of the in vitro response was measured by two procedures: (i) ELISPOT IFN- ⁇ , which allows an estimation of the frequency of Melan- A-specific T cells able to produce IFN- ⁇ upon short term restimulation, and (ii) flow cytometry analysis with tetramers, which enables direct enumeration of Melan-A antigen- specific T cells independent of their functional capabilities. Additionally, the antigen- specific T cells can be purified to homogeniety by tetramer guided cell sorting.
• the cytolytic activity of these T cell populations was addressed using 51 Cr release assay.
• the reference peptide for the in vitro stimulation experiments was the peptide Melan-A 26 . 35 A27L analog. This peptide was shown previously to possess a marked increased immunogenicity as compared to the non-modified Melan-A antigenic peptides Melan-A 26-35 and Melan-A 27-35 (Valmori et al., J. Immunol. 1998, 160 : 1750-1758, Men et al., J. Immunol. 1999, 162 : 3566-3573).
• Figure 2 depicts the immunogenicity of the Melan-A 26-35 A27L modified analogs.
• CTL specific for the non-natural modified Melan- A analogs were obtain by in vitro stimulation of PBL of healthy donor as describe in the Examples. After 14 days, the resulting cultured lymphocytes were evaluated by ELIspot assay for the number of peptide-specific IFN ⁇ -secreting lymphocytes.
• the CR1-A2 target cells used were pulsed with different antigenic peptide and used as stimulating cells.
• the Melan-A designation in Figure 2 corresponds to modified peptide of Melan- A 26-35 A27L antigen.
• Figure 3 depicts the recognition of tumor cells by CTL generated with the Melan- A 26 - 35 A27L non-natural modified analogs.
• CTL specific for the non-natural modified Melan-A analogs were obtained by in vitro stimulation.
• Tumor cell recognition by CTL specific for the Melan- A 26 - 35 A27L modified analogs was evaluated by ELIspot assay for IFN ⁇ secreting lymphocytes.
• the stimulating cells used were the Melan-A + , HLA- A*0201 + tumor cell line Mel 290 or the CR1A2 (Melan-A " , HLA-A*0201 + ) cells as control.
• FIG. 4 depicts the recognition of Melan-A 26-35 by the CTL generated with the Melan- A 26-35 A27L modified analogs.
• the cytolytic activity of the CTL was tested in a 51 Cr release assay after tetramer guided cell sorting of the Melan-A specific CD8+ tetramer+ and CD8+ tetramer - lymphocyte populations.
• T2 target cells were pulsed l ⁇ M of Melan- A 26-35 peptide and mixed with lymphocytes with an effector to target cell ratio of 5/1. As control, the same experiments were done with T2 cells that were not pulsed with the Melan- A 26-35 peptide.
• the CTL generated by stimulation with the modified Melan-A analogs present the same capability as the Melan-A 26-35 A27L specific CTL to recognize and lyse the tumor cells Me 290 that naturally presented the Melan-A antigen.
• CTLs specific for the modified Melan-A analog were generated after in vitro stimulation of PBLs with appropriate peptide as describe in the Examples.
• the CTL populations CD8+ tetramer+ and CD8+ tetramer - were sorted after flow cytometry analysis.
• the ability of the CTL CD8+ tetramer+ to lyse the tumor cell Mel 290 was assayed using a 51 Cr release assay.
• the CTL were incubated with 51 Cr labeled tumor cells at a ratio effector to target of 5/1.
• the recognition of tumor cells by CTL generated with the Melan- A 26-35 A27L modified analogs is depicted in Figure 5.
• the structurally modified peptides [ ⁇ MeL2, ⁇ MeL8]-Melan-A 26-35 A27L, [ ⁇ MeL2, amide] -Melan- A 26-35 A27L, are fully resistant to peptidase activity and retain both the antigenicity and, most importantly, the immunogenicity of the parental tumor antigen Melan- A 26-35 A27L.
• These peptides are potent stimulators of anti-melanoma CTL immune response and would be useful for inducing an immunological response to melanoma cells.
• the immunogenicity of additional modified Melan-A peptide analogs were assayed by stimulating CD8 + enriched cells isolated from PBL of three healthy donors with seven modified peptides. The same experiment was performed with the Melan-A 26- 3 A27L peptide as control. For the second stimulation, i ⁇ adiated T2 cells pulsed with the appropriate peptides were used. The cells were assayed by flow cytometry 7 days after the second stimulation (MC2) for the presence of CD8 + A2/MelanA tetramer + cells.
• A2/MelanA tetramer + cells were detected in the CD8 + cells population indicating that the A2/Melan-A tetramer was fully or partially cross reactive with the analog specific CTL, as shown in the Figure 6.
• Figure 6 depicts the antigenic specificity and tumor recognition of CTL induced with the modified Melan-A 26-35 A27L peptides.
• the tetramer+ CD8+ lymphocyte population was sorted on a FACSvantage cell sorter (exemplified in Figure 6A for MelanA 26-35 A27L).
• the gate define for cell sorting of tetramer+ CD8+ population is also represented. Cell sorting of the tetramer+ CD8+ population and subsequent in vitro expansion of lymphocyte was realized for all the stimulation with the different analogs with the same conditions.
• Fig 6 B1-B8 depicts Melan-A antigenic peptide recognition by the modified Melan-A analogs-specific CTL.
• a chromium release assay was performed with T2 cells as target cell pulsed with increasing concentration of peptide, the effector to target cell ratio was 10/1.
• Fig. 6 C1-C8 depicts tumor cell line recognition by the modified Melan- A analogs specific CTL.
• a cytolytic assay was performed with 5 Cr labeled tumor cells with an increasing effector to target cell ratio.
• the Melan-A analog used for in vitro stimulation is indicated in the figures.
• Cross reactivity of the A2/Melan-A tetramer allows direct evaluation of the efficacy of the modified analogs to generate Melan-A specific CTLs from PBLs of healthy donors.
• the percentage of Melan-A specific cells obtained after stimulation with peptide Melan-A 26- 35 A27L differed from one donor to another and related to the frequency of Melan-A reactive precursors in the initial CD8 + population (Table IV, HD224 : 2.8%, HD410 2.5%, HD220 0.3%).
• the percentages of Melan-A specific cells were lower, similar or in some case higher than the percentage obtained with the parental peptide Melan-A 26 - 35 A27L (Table IV).
• cells were incubated with tetramers (200 ng/sample) in 20 ⁇ l of PBS/2% FCS for 20 min at room temperature, then 20 ⁇ l of anti-CD8FITC mAb (Becton Dickinson, Basel, Switzerland) were added, and cells were incubated for an additional 30 min at 4°C.
• Cells were washed once in the same buffer and analyzed by flow cytometry using a FACScan (Becton Dickinson). Data analysis was performed using CellQuest software (Becton Dickinson).
• the CD8+ tetramer+ and CD8+ tetramer- lymphocyte populations were sorted using a FACSVantage (Becton Dickinson) cell sorter.
• the tumor cells line Mel 290 and Mel 275 which naturally express the Melan-A antigen on the cell surface, was also recognized by CTLs specific for modified Melan-A analogs.
• the CTLs induced with the modified Melan A 26-36 A27L analogs displayed similar cytolytic specificity as the CTLs specific for the parental peptide Melan-A 6-35 A27L and are fully capable of recognizing cells presenting complexes of the parental Melan-A peptides and lysing tumor cell lines which naturally express the Melan-A antigen.
• EXAMPLE 7 IFN- ⁇ ELIspot assay. Nitrocellulose-lined microtiter plates (Multiscreen-HA, Millipore) were coated overnight with antibody to human IFN- ⁇ (Mabtech) and washed six times. Lymphocytes (5 x 10 4 per well) were mixed with an equal number of target cells CR1-A2 alone or pulsed with peptide in Iscove's medium (200 ⁇ l) supplemented with 8% human serum and incubated 20 h at 37°C. After extensive washing with washing buffer (PBS, 01%- Tween 20), plates were incubated with biotinylated secondary antibody, then washed again and incubated with avidin conjugated with alkaline phosphatase.
• washing buffer PBS, 01%- Tween 20
• the modified peptides may be used to stimulate CTLs in vitro which recognize melanoma cells expressing the natural peptide and these CTLs could be introduced into a patient in need thereof to lyse the melanoma cells.
• the modified peptides may be introduced into a subject in need thereof to stimulate the subject's own CTLs to mount a response against the cells expressing the natural peptide in complex with an MHC molecule.

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