EP0968205A1 - Process for the preparation of 2- (2-pyridinyl)methyl]sulfinyl]-1h-benzimidazoles and novel compounds of use for such purpose - Google Patents

Process for the preparation of 2- (2-pyridinyl)methyl]sulfinyl]-1h-benzimidazoles and novel compounds of use for such purpose

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Publication number
EP0968205A1
EP0968205A1 EP98902961A EP98902961A EP0968205A1 EP 0968205 A1 EP0968205 A1 EP 0968205A1 EP 98902961 A EP98902961 A EP 98902961A EP 98902961 A EP98902961 A EP 98902961A EP 0968205 A1 EP0968205 A1 EP 0968205A1
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compound
process according
general formula
carried out
formula
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German (de)
French (fr)
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Finn Priess Clausen
Klaus Karl Mccluskey
Herbert Fritz Preikschat
Soren Bols Pedersen
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Sandoz AS
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GEA Farmaceutisk Fabrik AS
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    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07DHETEROCYCLIC COMPOUNDS
    • C07D401/00Heterocyclic compounds containing two or more hetero rings, having nitrogen atoms as the only ring hetero atoms, at least one ring being a six-membered ring with only one nitrogen atom
    • C07D401/02Heterocyclic compounds containing two or more hetero rings, having nitrogen atoms as the only ring hetero atoms, at least one ring being a six-membered ring with only one nitrogen atom containing two hetero rings
    • C07D401/12Heterocyclic compounds containing two or more hetero rings, having nitrogen atoms as the only ring hetero atoms, at least one ring being a six-membered ring with only one nitrogen atom containing two hetero rings linked by a chain containing hetero atoms as chain links
    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07DHETEROCYCLIC COMPOUNDS
    • C07D235/00Heterocyclic compounds containing 1,3-diazole or hydrogenated 1,3-diazole rings, condensed with other rings
    • C07D235/02Heterocyclic compounds containing 1,3-diazole or hydrogenated 1,3-diazole rings, condensed with other rings condensed with carbocyclic rings or ring systems
    • C07D235/04Benzimidazoles; Hydrogenated benzimidazoles
    • C07D235/24Benzimidazoles; Hydrogenated benzimidazoles with hetero atoms or with carbon atoms having three bonds to hetero atoms with at the most one bond to halogen, e.g. ester or nitrile radicals, directly attached in position 2
    • C07D235/28Sulfur atoms
    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07DHETEROCYCLIC COMPOUNDS
    • C07D513/00Heterocyclic compounds containing in the condensed system at least one hetero ring having nitrogen and sulfur atoms as the only ring hetero atoms, not provided for in groups C07D463/00, C07D477/00 or C07D499/00 - C07D507/00
    • C07D513/02Heterocyclic compounds containing in the condensed system at least one hetero ring having nitrogen and sulfur atoms as the only ring hetero atoms, not provided for in groups C07D463/00, C07D477/00 or C07D499/00 - C07D507/00 in which the condensed system contains two hetero rings
    • C07D513/04Ortho-condensed systems

Definitions

  • the present invention relates to a process for the preparation of 2- [[ (2-pyridinyl) methyl] sulfinyl] -IH- benzimidazole derivatives of the general formula V
  • R represents H, OCH 3 , 0CHF 2 or CF 3 ,
  • R 3 represents H, CH 3 or 0CH 3 ,
  • R 4 represents H, 0CH 3 , OCH 2 CF 3 , halo or nitro
  • R 5 represents H, CH 3 or OCH 3 , and n is 0 or 1, and salts thereof.
  • the invention relates to novel compounds of use for such purpose .
  • the above mentioned compounds of formula V are biologically active and/or may be used as intermediates in the synthesis of biologically active compounds.
  • the compounds of formula V wherein n is 1 are novel compounds.
  • the present invention provides an elegant new synthesis for the preparation of these compounds, which proceeds in three steps via novel cyclic intermediates and provides the compounds in excellent yields. The three steps may even be carried out in situ as a one-pot process.
  • the compounds of formula V, wherein n is 1, are converted into the corresponding compounds of formula V, wherein n is 0, by reduction.
  • FR 2 567 123 Al includes no description of any other 2- [[ (l-oxido-2-pyridinyl) methyl] sulfinyl] -lH-benzimidazoles or their preparation. No conversion of the compound to the corresponding 2- [ [ (2-pyridinyl) methyl] sulfinyl] -IH-benzimidazole is described either.
  • N-oxide being isolated or converted into lansoprazole .
  • the present invention provides a new process for the preparation of 2- [[ (2-pyridinyl) methyl] sulfinyl] - IH-benzimidazole derivatives of the general formula V
  • R 2 represents H, OCH 3 , 0CHF 2 or CF 3 ,
  • R 3 represents H, CH 3 or OCH 3 ,
  • R 4 represents H, OCH 3 , OCH 2 CF 3 , halo or nitro
  • R 5 represents H, CH 3 or 0CH 3 , and n is 0 or 1, and salts thereof, which process comprises thhee sstteeppss ooff : ii)) ccyyccllii:zing a 2 , 3-diihhyyddrroo--22--tthhiiooxxoo--llHH--benzimida- zole-1-carboxamide of the g rre ⁇ neciraa ll f fo ⁇ rrmmunlla _a I T
  • R 1 represents branched or straight C 1 _ a - alkyl, C 3 . 8 -cycloalkyl , aryl, aralkyl having 1-8 C-atoms in the alkyl moiety, or a 5- or 6-membered heterocyclic group having one, two or three hetero atoms selected from nitrogen, sulfur and oxygen in the heterocyclic ring
  • R 2 have the same meanings as defined for formula V and is located in the 5- or 6-position of the benz- imidazole nucleus, by oxidation in a suitable solvent so as to form a 1, 2 , 4-thiadiazolo [4 , 5-a] benzimidazole-3 (2H) -one of the general formula II,
  • R 1 and R 2 are as defined above, and the R 2 group is located in the 6- or 7 -position of the condensed ring, ii) oxidizing the obtained compound of formula II so as to form a 1 , 2 , 4-thiadiazolo [4 , 5-a] benzimidazole- 3 (2H) -one-1-oxide of the general formula III,
  • R 1 and R 2 are as defined above, and the R 2 group is located in the 6- or 7 -position of the condensed ring, and iii) reacting the obtained compound of formula III with a pyridine-N-oxide of the general formula IV
  • R 3 , R 4 and R 5 are as defined above, in the presence of an alcoholate, so as to form a 2-[(2- pyridinylmethyl) sulfinyl] -IH-benzimidazole derivative of the general formula Va
  • R 2 , R 3 , R 4 and R 5 are as defined above, and, if desired, converting a compound obtained in free form into a salt thereof, or vice versa, a compound of any of the formulae I, II, III and Va, if desired, being converted into a different compound of said formula before the reaction in the next step is carried out, and furthermore, if desired, iv) reducing the obtained compound of formula Va or a salt thereof into a compound of the general formula Vb,
  • R 2 , R 3 , R 4 and R 5 are as defined above, and, if desired, converting a compound obtained in free form into a salt thereof, or vice versa.
  • the synthesis of addition products of the unsub- stituted benzimidazolinethione and isocyanates and the cyclization of the addition products by treatment with bromine/triethylamine, sulfurylchloride or thionyl- chloride has been described in Tetrahedron, Vol. 39, No. 13, pp. 2311 - 2314, (1983), D. Martin and F. Tittelbach, "Synthesen von Benzimidazolo [1, 2-d] (1,2,4)- thiadiazolinen” .
  • the compounds of formula II wherein R 2 is other than hydrogen appear to be novel compounds and as such represent a particular aspect of the invention.
  • the compounds of formula I wherein R 2 is other than hydrogen appear to be novel compounds and as such represent a particular aspect of the invention.
  • the oxidation of sulphenamides into sulphinamides has been described in e.g. Houben-Weyl , " Methoden der Organischen Chemie", Vol. Ell, p. 655, (1985) and Patai, "The Chemistry of Sulphinic Acids", p. 259 and pp. 609-10 (1990).
  • the compounds of formula III appear not only to be novel, but also to represent a novel cyclic structure.
  • R 2 ; R J R 4 and R 5 are as defined above, are formed.
  • R 1 represents branched or straight preferably such as methyl, ethyl, propyl , incl . n-propyl and i-propyl, butyl, incl. n-butyl, sec. -butyl and tert. -butyl, pentyl, incl. n-pentyl and tert . -pentyl , hexyl , heptyl and octyl, C 3 .
  • R 1 group is not particularly critical as long as it allows the desired reactions to take place.
  • a presently preferred R 1 group is cyclohexyl being easily obtainable through the commercially available cyclohexyliso- cyanate .
  • the oxidative cyclisation in step i) is carried out in a suitable solvent, such as a halogenated hydrocarbon solvent, preferably chloroform, methylene chloride, 1 , 1 , 1-trichloroethane or a mixture thereof.
  • a suitable solvent such as a halogenated hydrocarbon solvent, preferably chloroform, methylene chloride, 1 , 1 , 1-trichloroethane or a mixture thereof.
  • any solvent allowing the desired reaction to take place may be used.
  • the cyclisation is carried out using an oxidation agent, such as an oxidation agent selected from bromine, chlorine and sulfuryl chloride.
  • an oxidation agent selected from bromine, chlorine and sulfuryl chloride.
  • a base such as a trialkylamine base and preferably triethylamine, may be added.
  • the cyclisation is carried out using bromine as oxidation agent followed by addition of triethylamine.
  • the oxidative cyclisation will be carried out at a temperature from -20°C - 70°C, and preferably from 0°C - 40°C.
  • step ii) the compound of formula II is oxidized into a compound of formula III using a suitable oxidation agent.
  • a suitable oxidation agent such as oxidation agents selected from peracids, alkylhydroperoxides, benzoylperoxides, hydrogenperoxide, tetraalkylammonium meta-periodates and perborates, can be mentioned.
  • the peracids are preferably optionally substituted perben- zoic acids, such as m-chloroperbenzoic acid.
  • the oxidation in step ii) is carried out at a temperature from -70°C - 70°C, and preferably from -20°C - 30°C.
  • the oxidation in step ii) is carried out in a suitable solvent, such as a halogenated hydrocarbon solvent, preferably chloroform, methylene chloride, 1,1,1- trichloroethane or a mixture thereof.
  • a suitable solvent such as a halogenated hydrocarbon solvent, preferably chloroform, methylene chloride, 1,1,1- trichloroethane or a mixture thereof.
  • any solvent allowing the desired reaction to take place may be used.
  • the reaction of the compound of formula III with the pyridine-N-oxide of formula IV in step iii) is carried out in the presence of an alcoholate, such as an alkali or alkaline earth metal alcoholate of an aliphatic or alicyclic alcohol.
  • an alcoholate such as an alkali or alkaline earth metal alcoholate of an aliphatic or alicyclic alcohol.
  • Lithium, sodium and potassium are specific examples of the alkali metals and calcium and magnesium are specific examples of the alkaline earth metals which may be of use in the preparation of the alcoholate.
  • Methanol , ethanol, n- propanol , i-propanol, n-butanol, i-butanol and t- butanol are specific examples of the aliphatic alcohols, and benzyl alcohol of the alicyclic alcohols which may be of use in the preparation of the alcoholate.
  • a presently preferred alcoholate is an alkali metal alcoholate, particularly potassium t- butoxide.
  • the reaction in step iii) is carried out at a temperature from -70°C - 50°C and preferably from -30°C - 30°C.
  • suitable solvents for the reaction in step iii) are solvents of alkyl- or cycloalkylether type, such as tetrahydrofuran and dioxane, although any solvent allowing the reaction to take place may be used.
  • all three steps i) , ii) and iii) or the steps i) and ii) , respectively ii) and iii) may be carried out in situ as a one-pot process.
  • a compound of formula Va or a salt thereof as obtained by the above steps i) , ii) and iii) may be reduced into a compound of formula Vb using a suitable reducing agent, a compound of any of the formulae I, II, III and Va, if desired, being converted into a different compound of said formula before the reaction in the next step is carried out.
  • reducing agents which may be of use for the reduction of a compound of formula Va into a compound of formula Vb
  • thiobisamines diaminosul- fanes
  • dialkoxysulfanes dialkoxysulfanes
  • catalytical reduction agents such as RaNi/H 2 and Ru-catalysts/H 2
  • the reduction is carried out using a thiobisamine and particularly thiobismorpholine or thiobispiperidine as reducing agent in the presence of an alcohol and an acid.
  • the thiobisamines allow for selective reduction of the N-oxide group in the compounds of formula Va, whereby the compounds of formula Vb may be obtained in almost quantitative yield.
  • the reaction takes place under mild conditions.
  • the reduction can be carried out in an alcoholic solvent, such as in a meth- anolic and/or ethanolic solvent.
  • the reaction will usually be carried out at a temperature in the range from -10°C - 40°C, although, in principle, there is no hindrance to using temperatures outside this range, such as temperatures in the ranges from -50°C - -10°C and from 40°C - 70°C.
  • the thiobisamine is used in at least an equimolar ratio to the compound of formula Va, although the reaction may proceed at lower ratios such as at ratios of about 0.8.
  • the reaction may proceed at lower ratios such as at ratios of about 0.8.
  • molar ratios above 5.0 will normally be avoided.
  • the molar ratio will not exceed 2.5 and in most cases the molar ratio will be in the range from 1.0 to 1.5.
  • the reduction is carried out in the presence of a mineral acid, preferably hydrochloric acid and/or sulphuric acid.
  • the hydrochloric acid may be added as a solution of hydrogen chloride in water, e.g.
  • a solvent preferably an alcoholic solvent, such as a solution in methanol and/or ethanol .
  • a solution of hydrogen bromide e.g. in an alcohol as mentioned above, may be used.
  • the reduction is carried out in a methanolic and/or ethanolic solvent in the presence of hydrogen chloride under substantially anhydrous conditions.
  • Example A N-Cyclohexyl -2 , 3-dihydro-5-methoxy-2- thioxo-lH-benzimidazole-1-carboxamide (from 4-methoxy- 2-nitroaniline) . N-Cyclohexyl-N' - (4-methoxy-2-nitrophenyl) urea.
  • N-Cyclohexyl-N' - (2-amino-4-methoxyphenyl) urea N-Cyclohexyl-N' - (4-methoxy-2-nitrophenyl) urea .
  • N-Cyclohexyl-N' - (4-methoxy-2-nitrophenyl) urea 50.0 g, 170 mmol) was suspended in ethanol (1.5 L) and 10% Palladium on Carbon (5.0 g) was added. The mixture was reduced with hydrogen at 1 atm. and room temperature overnight. Then the reaction mixture was heated to 70°C and the catalyst filtered off. The filtrate was evaporated to 400 mL and cooled to -20°C. The precipitate was filtered off, washed with ethanol and dried at 50°C to give 39.8 g (89 %) of the title compound as a white crystalline product. Mp . 187-88°C.
  • N-Cyclohexyl-N' - (2 -amino-4 -methoxyphenyl ) urea (104.4 g, 397 mmol) and carbondisulfide (66.4 g, 874 mmol) were heated in dry DMF (400 mL) for 41 h at 50°C. The resulting solution was cooled to room temperature and added to water (1250 mL) over 1_ h. After further stirring for 2 h the precipitate was filtered off, washed with water and dried at 60°C to give 118.6 g (98 %) of the title compound as a white crystalline product. Mp. 188-90°C. Recrystallisation from acetone raised the melting point to 198-201°C.
  • Example B N-Cyclohexyl-2 , 3-dihydro-2 -thioxo-lH- benzimidazole-1-carboxamide .
  • N-Cyclohexyl-2 , 3 -dihydro-5-methoxy-2 - thioxo-lH- benzimidazole-1-carboxamide (91.6 g, 300 mmol) (Ex. A) was suspended in chloroform (1.1 L) at room temperature. Bromine (47.9 g, 300 mmol) in chloroform (150 mL) was added over 70 min. at room temperature. Triethylamine (60.6 g, 600 mmol) was added. The formed solution was allowed to cool to room temperature over 1 h and then washed with water (2x1 L) . The organic phase was dried over anhydrous sodium sulfate and evaporated in vacuum into a fat crystalline suspension.
  • N-Cyclohexyl -2, 3 -dihydro-5-methoxy-2 -thioxo-lH- benzimidazole-1-carboxamide (9.16 g, 30 mmol) (Ex. A) was suspended in chloroform (100 mL) at room temperature. Bromine (4.80 g, 30 mmol) in chloroform (50 mL) was added over a period of 1 h at room temperature.
  • Triethylamine (6.06 g, 60 mmol) was added. The formed solution was cooled to room temperature and washed with water (2x150 mL) . The organic phase was dried over anhydrous sodium sulfate and filtered. The above solution was cooled on an ice bath. 98 % m-CPBA (5.02 g, 29 mmol) was added in portions over 25 min. After further stirring for 40 min. chloroform was distilled off in vacuum. Remaining chloroform was removed by evaporation in vacuum with toluene to give a fat crystalline suspension.
  • Example 4 was repeated, but using 1, 1 ' -thiobis- piperidine (synthesized from sodium thiosulfate penta- hydrate, bromine and piperidine as described by J. L. Kice et al, J. Org . Chem. 56 (1991) 5235-6) as the reducing agent. Yield 91%. Mp . 154-5°C (dec). Calc. for C 17 H 19 N 3 0 3 S : C:59.1%; H:5.6%; N:12.2%; S:9.3%. Found: C:59.1%; H:5.6%; N:12.2%; S:9.5%.
  • Petroleum benzine (bp. 80-100°C) was added. The formed precipitate was filtered off, washed with petroleum benzine and dried in vacuum at 35°C to give 24.3 g (89 %) of the title compound as an off-white product. Mp . 202-6°C.
  • acetic acid (4.8 g, 80 mmol) was added.
  • the reaction mixture was evaporated in vacuum to a fat suspension (about 50 mL) and then 1-butanol-toluene (1:3) (80 mL) and water (150 mL) were added.
  • the pH was adjusted to 12 with UN sodium hydroxide.
  • the water phase was washed with further 1-butanol-toluene (1:3) (80 mL) and then adjusted to pH 7.7 by slowly addition of acetic acid.
  • the resulting suspension was cooled on an ice bath.
  • the precipitate was filtered off and washed with water. Drying at 50°C gave 7.0 g of the crude title compound.
  • the formed suspension was extracted with 1-butanol-toluene (1:1) (120 mL) at 30 °C.
  • the organic phase was dried over anhydrous sodium sulfate and then evaporated in vacuum to about 35 L. Cooling to 5°C, filtration, washing with 1- butanol and drying at 50 °C gave 2.41 g (77 %) of the title compound as a white crystalline product. Mp . 164- 5°C (dec.) .
  • the title compound was prepared in 3 steps from N- cyclohexyl-2 , 3-dihydro-5-methoxy-2-thioxo-lH-benzimida- zole-1-carboxamide and 4-chloro-2 , 3 , 5-trimethyl-pyri- dine-N-oxide in 40 % yield essentially following the procedure described for omeprazole-N-oxide (Ex. 2) . Mp . 188-9°C (dec.) .
  • the reaction mixture was poured into water (40 mL) , and pH was adjusted to 7.0 with acetic acid (1.35 mL) . Then chloroform (50 mL) was added. After separ- ation of the water phase, the chloroform phase was washed with water (2 x 50 mL) and dried over magnesium sulf te. After removal of the magnesium sulfate by filtering, hexane in excess (50 mL) was added. The reaction mixture was left for crystallisation for 1 h, after which the crystals were removed by filtering, washed with hexane (25 mL) and dried.
  • the NMR data correspond to those of an authentic sample .

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  • Chemical & Material Sciences (AREA)
  • Organic Chemistry (AREA)
  • Plural Heterocyclic Compounds (AREA)
  • Pharmaceuticals Containing Other Organic And Inorganic Compounds (AREA)
  • Nitrogen And Oxygen Or Sulfur-Condensed Heterocyclic Ring Systems (AREA)

Abstract

2-[[(2-pyridinyl)methyl]sulfinyl]-1H-benzimidazole derivatives of general formula (V) wherein R2 represents H, OCH¿3?, OCHF2 or CF3, R?3¿ represents H, CH¿3? or OCH3, R?4¿ represents H, OCH¿3?, OCH2CF3, halo or nitro, R?5¿ represents H, CH¿3? or OCH3, and n is 0 or 1, or salts thereof, are prepared by a new process proceeding via novel intermediates of general formulae (I), (II), (III) and (Va) wherein R?1¿ represents branched or straight C¿1-8?-alkyl, C3-8-cycloalkyl, aryl, aralkyl having 1-8 C-atoms in the alkyl moiety, or a 5- or 6-membered heterocyclic group having one, two or three hetero atoms selected from nitrogen, sulfur and oxygen in the heterocyclic ring. The compounds of formula (V) are biologically active and/or may be used as intermediates in the synthesis of biologically active compounds.

Description

Process for the preparation of 2- [[ (2 -pyridinyl)me- thyl] sulfinyl] -lH-benzimidazoles and novel compounds of use for such purpose.
The present invention relates to a process for the preparation of 2- [[ (2-pyridinyl) methyl] sulfinyl] -IH- benzimidazole derivatives of the general formula V
wherein
R represents H, OCH3, 0CHF2 or CF3,
R3 represents H, CH3 or 0CH3,
R4 represents H, 0CH3, OCH2CF3, halo or nitro,
R5 represents H, CH3 or OCH3, and n is 0 or 1, and salts thereof.
Furthermore, the invention relates to novel compounds of use for such purpose .
The above mentioned compounds of formula V are biologically active and/or may be used as intermediates in the synthesis of biologically active compounds.
The compounds, 5-methoxy-2- [ [ (4-methoxy-3 , 5- dimethyl-2 -pyridinyl) methyl] sulfinyl] -IH-benzimidazole (omeprazole) , 2- [ [ [4- (2 , 2 , 2-trifluoroethoxy) -3-methyl- 2 -pyridinyl] methyl] sulfinyl] -IH-benzimidazole (lanso- prazole) , 2- [[ (2-pyridinyl) methyl] sulfinyl] -IH-benzimidazole (timoprazole) and 5-difluoromethoxy-2- [ [ (3,4- dimethoxy-2 -pyridinyl) methyl] sulfinyl] -IH-benzimidazole (pantoprazole) , being known as gastric acid secretion inhibiting agents, are examples of biologically active compounds of the general formula V. With a few exceptions, the compounds of formula V wherein n is 1, are novel compounds. The present invention provides an elegant new synthesis for the preparation of these compounds, which proceeds in three steps via novel cyclic intermediates and provides the compounds in excellent yields. The three steps may even be carried out in situ as a one-pot process. In an optional step of the process, the compounds of formula V, wherein n is 1, are converted into the corresponding compounds of formula V, wherein n is 0, by reduction. The unsubstituted compound of formula V, wherein n is 1, i.e. the compound 2- [[ (1-oxido-2 -pyridinyl) methyl] sulfinyl] -IH-benzimidazole, is described in FR 2 567 123 Al, Example 13, yet without indication of specific process details. FR 2 567 123 Al includes no description of any other 2- [[ (l-oxido-2-pyridinyl) methyl] sulfinyl] -lH-benzimidazoles or their preparation. No conversion of the compound to the corresponding 2- [ [ (2-pyridinyl) methyl] sulfinyl] -IH-benzimidazole is described either.
The compound of formula V wherein n is 1, R2 and R5 are hydrogen, R3 is methyl and R4 is 2 , 2 , 2-trifluoro- ethoxy, i.e. the compound 2- [ [ [4- (2 , 2 , 2-trifluoro- ethoxy) -3 -methyl -1-oxido-2 -pyridinyl] methyl] sulfinyl] - IH-benzimidazole (lansoprazole-N-oxide) , is described in ES 2 063 705 Bl as being obtained as an impurity when the compound 2- [ [ [4- (2 , 2 , 2-trifluoroethoxy) -3- methyl -2 -pyridinyl] methyl] thio] -IH-benzimidazole is oxidized into 2- [[ [4- (2 , 2 , 2-trifluoroethoxy) -3-methyl- 2-pyridinyl] methyl] sulfinyl] -IH-benzimidazole (lanso- prazole) , using m-chloroperbenzoic acid or hydrogen peroxide in the presence of vanadium compounds as oxidation agent. There is no mentioning of the N-oxide being isolated or converted into lansoprazole . Besides, the compound of formula V wherein n is 1, R3 and R5 represent CH3, and R2 and R4 represent OCH3, i.e. the compound 5-methoxy-2- [ [ (4-methoxy-3 , 5- dimethyl-l-oxido-2 -pyridinyl) methyl] sulfinyl] -IH-benzimidazole (omeprazole-N-oxide) , has been reported as having been found as a metabolite of omeprazole in rats, CA 124:306394, Yakubutsu Dotai, 11(1), 45-56 (Japanese) 1996.
The present invention provides a new process for the preparation of 2- [[ (2-pyridinyl) methyl] sulfinyl] - IH-benzimidazole derivatives of the general formula V
wherein
R2 represents H, OCH3 , 0CHF2 or CF3,
R3 represents H, CH3 or OCH3,
R4 represents H, OCH3, OCH2CF3, halo or nitro,
R5 represents H, CH3 or 0CH3, and n is 0 or 1, and salts thereof, which process comprises thhee sstteeppss ooff : ii)) ccyyccllii:zing a 2 , 3-diihhyyddrroo--22--tthhiiooxxoo--llHH--benzimida- zole-1-carboxamide of the g rreαneciraa ll f fo Λrrmmunlla _a I T
wherein R1 represents branched or straight C1_a- alkyl, C3.8-cycloalkyl , aryl, aralkyl having 1-8 C-atoms in the alkyl moiety, or a 5- or 6-membered heterocyclic group having one, two or three hetero atoms selected from nitrogen, sulfur and oxygen in the heterocyclic ring, and R2 have the same meanings as defined for formula V and is located in the 5- or 6-position of the benz- imidazole nucleus, by oxidation in a suitable solvent so as to form a 1, 2 , 4-thiadiazolo [4 , 5-a] benzimidazole-3 (2H) -one of the general formula II,
wherein R1 and R2 are as defined above, and the R2 group is located in the 6- or 7 -position of the condensed ring, ii) oxidizing the obtained compound of formula II so as to form a 1 , 2 , 4-thiadiazolo [4 , 5-a] benzimidazole- 3 (2H) -one-1-oxide of the general formula III,
wherein R1 and R2 are as defined above, and the R2 group is located in the 6- or 7 -position of the condensed ring, and iii) reacting the obtained compound of formula III with a pyridine-N-oxide of the general formula IV
wherein R3, R4 and R5 are as defined above, in the presence of an alcoholate, so as to form a 2-[(2- pyridinylmethyl) sulfinyl] -IH-benzimidazole derivative of the general formula Va
wherein R2, R3, R4 and R5 are as defined above, and, if desired, converting a compound obtained in free form into a salt thereof, or vice versa, a compound of any of the formulae I, II, III and Va, if desired, being converted into a different compound of said formula before the reaction in the next step is carried out, and furthermore, if desired, iv) reducing the obtained compound of formula Va or a salt thereof into a compound of the general formula Vb,
wherein R2, R3, R4 and R5 are as defined above, and, if desired, converting a compound obtained in free form into a salt thereof, or vice versa. The synthesis of addition products of the unsub- stituted benzimidazolinethione and isocyanates and the cyclization of the addition products by treatment with bromine/triethylamine, sulfurylchloride or thionyl- chloride has been described in Tetrahedron, Vol. 39, No. 13, pp. 2311 - 2314, (1983), D. Martin and F. Tittelbach, "Synthesen von Benzimidazolo [1, 2-d] (1,2,4)- thiadiazolinen" . However, the compounds of formula II wherein R2 is other than hydrogen, appear to be novel compounds and as such represent a particular aspect of the invention. Also the compounds of formula I wherein R2 is other than hydrogen appear to be novel compounds and as such represent a particular aspect of the invention. The oxidation of sulphenamides into sulphinamides has been described in e.g. Houben-Weyl , " Methoden der Organischen Chemie", Vol. Ell, p. 655, (1985) and Patai, "The Chemistry of Sulphinic Acids", p. 259 and pp. 609-10 (1990). However, the compounds of formula III appear not only to be novel, but also to represent a novel cyclic structure. To our knowledge, the entire group of 1,2, 4-thiadiazolo [4, 5-a] "fused ring" -3 (H) -one- 1-oxides are compounds not having been described prior to the present invention. Thus, also the compounds of formula III represent a particular aspect of the invention.
By reaction of the novel cyclic compounds III with the pyridine-N-oxide of formula IV in the presence of an alcoholate, a ring opening takes place whereby the compounds of formula V, wherein n is 1, i.e. the compounds of the general formula Va
wherein R2 ; RJ R4 and R5 are as defined above, are formed.
To our knowledge, compounds of formula Va have not been used for the preparation of compounds of formula
Vb before, and accordingly the use of a compound of formula Va for such purpose represents a particular aspect of the invention.
The starting compounds of formula I, some of which are novel compounds, may be prepared using the synthesis described in the above mentioned Tetrahedron paper, starting from known compounds and/or from novel compounds, which may be obtained using art known processes . As mentioned above, R1 represents branched or straight preferably such as methyl, ethyl, propyl , incl . n-propyl and i-propyl, butyl, incl. n-butyl, sec. -butyl and tert. -butyl, pentyl, incl. n-pentyl and tert . -pentyl , hexyl , heptyl and octyl, C3.8-cycloalkyl , such as cyclopropyl, cyclo- butyl , cyclopentyl, cyclohexyl, cycloheptyl and cyclo- hexyl , aryl, such as optionally substituted phenyl or naphthyl, aralkyl having 1-8, preferably 1-6 C-atoms in the alkyl moiety, such as optionally substituted benzyl, or an optionally substituted 5- or 6-membered heterocyclic group having one, two or three hetero atoms selected from nitrogen, sulfur and oxygen in the heterocyclic ring. Specific examples of such groups are furyl , thienyl and pyridinyl . The nature of the R1 group is not particularly critical as long as it allows the desired reactions to take place. A presently preferred R1 group is cyclohexyl being easily obtainable through the commercially available cyclohexyliso- cyanate . The oxidative cyclisation in step i) is carried out in a suitable solvent, such as a halogenated hydrocarbon solvent, preferably chloroform, methylene chloride, 1 , 1 , 1-trichloroethane or a mixture thereof. However, any solvent allowing the desired reaction to take place may be used.
The cyclisation is carried out using an oxidation agent, such as an oxidation agent selected from bromine, chlorine and sulfuryl chloride.
If desired, a base, such as a trialkylamine base and preferably triethylamine, may be added. In a presently preferred embodiment, the cyclisation is carried out using bromine as oxidation agent followed by addition of triethylamine.
In general the oxidative cyclisation will be carried out at a temperature from -20°C - 70°C, and preferably from 0°C - 40°C.
In step ii) the compound of formula II is oxidized into a compound of formula III using a suitable oxidation agent. As an example of suitable oxidation agents, the oxidation agents of peroxy-type, such as oxidation agents selected from peracids, alkylhydroperoxides, benzoylperoxides, hydrogenperoxide, tetraalkylammonium meta-periodates and perborates, can be mentioned. The peracids are preferably optionally substituted perben- zoic acids, such as m-chloroperbenzoic acid.
In general, the oxidation in step ii) is carried out at a temperature from -70°C - 70°C, and preferably from -20°C - 30°C.
As the oxidative cyclisation in step i) , the oxidation in step ii) is carried out in a suitable solvent, such as a halogenated hydrocarbon solvent, preferably chloroform, methylene chloride, 1,1,1- trichloroethane or a mixture thereof. However, any solvent allowing the desired reaction to take place may be used.
The reaction of the compound of formula III with the pyridine-N-oxide of formula IV in step iii) is carried out in the presence of an alcoholate, such as an alkali or alkaline earth metal alcoholate of an aliphatic or alicyclic alcohol. Lithium, sodium and potassium are specific examples of the alkali metals and calcium and magnesium are specific examples of the alkaline earth metals which may be of use in the preparation of the alcoholate. Methanol , ethanol, n- propanol , i-propanol, n-butanol, i-butanol and t- butanol are specific examples of the aliphatic alcohols, and benzyl alcohol of the alicyclic alcohols which may be of use in the preparation of the alcoholate. A presently preferred alcoholate is an alkali metal alcoholate, particularly potassium t- butoxide.
In general, the reaction in step iii) is carried out at a temperature from -70°C - 50°C and preferably from -30°C - 30°C. Examples of suitable solvents for the reaction in step iii) are solvents of alkyl- or cycloalkylether type, such as tetrahydrofuran and dioxane, although any solvent allowing the reaction to take place may be used. In a particular aspect of the invention, all three steps i) , ii) and iii) or the steps i) and ii) , respectively ii) and iii) may be carried out in situ as a one-pot process.
If desired, a compound of formula Va or a salt thereof as obtained by the above steps i) , ii) and iii) , may be reduced into a compound of formula Vb using a suitable reducing agent, a compound of any of the formulae I, II, III and Va, if desired, being converted into a different compound of said formula before the reaction in the next step is carried out.
As examples of reducing agents which may be of use for the reduction of a compound of formula Va into a compound of formula Vb, thiobisamines (diaminosul- fanes) , dialkoxysulfanes, and catalytical reduction agents such as RaNi/H2 and Ru-catalysts/H2 can be mentioned.
In a particularly preferred embodiment, the reduction is carried out using a thiobisamine and particularly thiobismorpholine or thiobispiperidine as reducing agent in the presence of an alcohol and an acid.
Many reducing agents have been suggested for use in the reduction of pyridine-N-oxides into pyridines, cf . e.g. the survey given in Houben-Weyl , "Methoden der Organischen Chemie", Vol. E7b, Part 2, (1992), pp. 543 - 557. However, as far as we know, thiobisamines have not hitherto been suggested for use in the reduction of pyridine-N-oxides into pyridines.
The thiobisamines allow for selective reduction of the N-oxide group in the compounds of formula Va, whereby the compounds of formula Vb may be obtained in almost quantitative yield.
As a further advantage, the reaction takes place under mild conditions. Thus, the reduction can be carried out in an alcoholic solvent, such as in a meth- anolic and/or ethanolic solvent. Furthermore, the reaction will usually be carried out at a temperature in the range from -10°C - 40°C, although, in principle, there is no hindrance to using temperatures outside this range, such as temperatures in the ranges from -50°C - -10°C and from 40°C - 70°C.
Usually, the thiobisamine is used in at least an equimolar ratio to the compound of formula Va, although the reaction may proceed at lower ratios such as at ratios of about 0.8. There is no specific upper limit, but for economical reasons molar ratios above 5.0 will normally be avoided. Typically, the molar ratio will not exceed 2.5 and in most cases the molar ratio will be in the range from 1.0 to 1.5. In a preferred embodiment, the reduction is carried out in the presence of a mineral acid, preferably hydrochloric acid and/or sulphuric acid. The hydrochloric acid may be added as a solution of hydrogen chloride in water, e.g. as concentrated hydro- chloric acid or as a solution of hydrogen chloride in a solvent, preferably an alcoholic solvent, such as a solution in methanol and/or ethanol . Also a solution of hydrogen bromide, e.g. in an alcohol as mentioned above, may be used. In an embodiment being particularly preferred at present, the reduction is carried out in a methanolic and/or ethanolic solvent in the presence of hydrogen chloride under substantially anhydrous conditions.
The invention will now be further illustrated by specific examples which, however, should not be regarded as any limitation of the scope of the invention.
EXAMPLES ,
Preparation of starting materials,
Example A. N-Cyclohexyl -2 , 3-dihydro-5-methoxy-2- thioxo-lH-benzimidazole-1-carboxamide (from 4-methoxy- 2-nitroaniline) . N-Cyclohexyl-N' - (4-methoxy-2-nitrophenyl) urea.
4-Methoxy-2-nitroaniline (150 g, 892 mmol) , cyclohexylisocyanate (112 g, 892 mmol) og pyridine (45 mL) were dissolved in DMF (dimethylformamide) (1.5 L) and heated to 80 °C for 8 h. The formed suspension was cooled to room temperature and ethanol (0.5 L) was added. After cooling on an ice bath, the precipitate was filtered off and washed with ethanol. Drying at 50°C afforded 227 g (87 %) of the title compound as a yellow product. Mp . 233-35°C.
N-Cyclohexyl-N' - (2-amino-4-methoxyphenyl) urea . N-Cyclohexyl-N' - (4-methoxy-2-nitrophenyl) urea (50.0 g, 170 mmol) was suspended in ethanol (1.5 L) and 10% Palladium on Carbon (5.0 g) was added. The mixture was reduced with hydrogen at 1 atm. and room temperature overnight. Then the reaction mixture was heated to 70°C and the catalyst filtered off. The filtrate was evaporated to 400 mL and cooled to -20°C. The precipitate was filtered off, washed with ethanol and dried at 50°C to give 39.8 g (89 %) of the title compound as a white crystalline product. Mp . 187-88°C.
N- Cyclohexyl -2 , 3 -dihydro-5-methoxy-2-thioxo-lH- benzimidazole-1-carboxamide .
N-Cyclohexyl-N' - (2 -amino-4 -methoxyphenyl ) urea (104.4 g, 397 mmol) and carbondisulfide (66.4 g, 874 mmol) were heated in dry DMF (400 mL) for 41 h at 50°C. The resulting solution was cooled to room temperature and added to water (1250 mL) over 1_ h. After further stirring for 2 h the precipitate was filtered off, washed with water and dried at 60°C to give 118.6 g (98 %) of the title compound as a white crystalline product. Mp. 188-90°C. Recrystallisation from acetone raised the melting point to 198-201°C. Example B. N-Cyclohexyl-2 , 3-dihydro-2 -thioxo-lH- benzimidazole-1-carboxamide .
The title compound was synthesized from 2-mer- captobenzimidazole and cyclohexylisocyanate essentially following the procedure described by E. Dyer et al . , J. Heterocyclic Chem. 6 (1969) 23-28.
Examples illustrating the process according to the invention.
Example 1. 5-Methoxy-2 -[[ (4 -methoxy-3 , 5 -dimethyl - 1-oxido- 2 -pyridinyl) methyl] sulfinyl] IH-benzimidazole (Omeprazole-N-oxide) .
A. 2 -Cyclohexyl- 7-methoxy- 1 , 2 , -thiadiazolo ,4,5- a] benzimidazole-3 (2H) -one .
N-Cyclohexyl-2 , 3 -dihydro-5-methoxy-2 - thioxo-lH- benzimidazole-1-carboxamide (91.6 g, 300 mmol) (Ex. A) was suspended in chloroform (1.1 L) at room temperature. Bromine (47.9 g, 300 mmol) in chloroform (150 mL) was added over 70 min. at room temperature. Triethylamine (60.6 g, 600 mmol) was added. The formed solution was allowed to cool to room temperature over 1 h and then washed with water (2x1 L) . The organic phase was dried over anhydrous sodium sulfate and evaporated in vacuum into a fat crystalline suspension. Ethanol (1.0 L) was added. After cooling to 0°C the precipitate was filtered off, washed with ethanol and dried in vacuum at 35°C to give 87.0 g (96 %) of the title compound as an off-white product. Mp . 181-4°C. Calc. for C15H17N302S: C:59.4%; H:5.7%; N:13.9%; S:10.6%. Found: C:59.2%; H:5.8%; N:13.6%; S : 10.6% . B . 2 -Cyclohexyl- 7-methoxy- 1 , 2 , 4-thiadiazolo [4,5- al benzimidazole-3 (2H) -one-1-oxide .
2 -Cyclohexyl -7 -methoxy- 1, 2, 4-thiadiazolo [4, 5 - a] benzimidazole-3 (2H) -one (24.3 g, 80 mmol) (Ex. 1A) was suspended in chloroform (160 mL) and cooled on an ice bath. 99% m-CPBA (m-chloroperbenzoic acid) (13.8 g, 80 mmol) was added in small portions over 45 min. at 2 - 5°C. Then the ice bath was replaced with a 2-propanol - ice bath. After further stirring for 20 min. cold t- butylmethylether (480 mL) was added over 15 min. After cooling to -9°C the precipitate was filtered off and washed with t -butylmethylether . Drying in vacuum at room temperature gave 20.6 g (81 %) of the title compound as a white product. Mp . 155-60°C. Calc. for C15H17N303S: C:56.4%; H:5.4%; N:13.2%; S:10.0%. Found: C:55.9%; H:5.4%; N:12.8%; S:9.8%.
C. 5-Methoxy-2- [ \ (4-methoxy-3 , 5-dimethyl -1-oxido- 2 -pyridinyl) methyl] sulfinyl] -IH-benzimidazole (Omepra- zole-N-oxide) .
2 -Cyclohexyl -7 -methoxy- 1 ,2,4-thiadiazolo [4, 5- a] benzimidazole-3 (2H) -one-1-oxide (19.2 g, 60 mmol) (Ex. IB) was suspended in dry tetrahydrofuran (200 mL) and cooled on an ice bath. Potassium-t-butylate (20.2 g, 180 mmol) was added in portions over 30 min. After further stirring for 5 min., 4-methoxy-2 , 3 , 5-trimethyl- pyridine-N-oxide (8.0 g, 48 mmol) was added. The dark green reaction mixture was stirred for 20 min., whereupon acetic acid (7.2 g, 120 mmol) was added. The suspension was evaporated in vacuum to about 100 mL, and the formed residue was dissolved in 1-butanol- toluene (1:4) (100 mL) - water (250 mL) . After adjusting the pH to 12 with IN sodium hydroxide the phases were separated. The water phase was slowly neutralized to pH 7.5 with acetic acid, whereby the title compound precipitated. After cooling to 0°C the precipitate was filtered off, washed with water and dried to give 12.8 g of crude omeprazole-N-oxide. The crude product was stirred with methanol (150 mL) for 20 min. at room temperature and then cooled to -20°C. The precipitate was filtered off and dried at 60°C to give 11.1 g (64 %) of omeprazole-N-oxide as a white product. Mp . 177- 8°C (dec) .
Calc. for C17H19N304S : C:56.5%; H:5.3%; N:11.6%; S : 8.9% . Found: C:56.2%; H:5.4%; N:11.7%; S:9.2%.
Example 2. 5-Methoxy-2- [ (4-methoxy-3 , 5-dimethyl- l-oxido-2 -pyridinyl) methyl] sulfinyl] -IH-benzimidazole (Omeprazole N-oxide) (3 steps in situ) .
N-Cyclohexyl -2, 3 -dihydro-5-methoxy-2 -thioxo-lH- benzimidazole-1-carboxamide (9.16 g, 30 mmol) (Ex. A) was suspended in chloroform (100 mL) at room temperature. Bromine (4.80 g, 30 mmol) in chloroform (50 mL) was added over a period of 1 h at room temperature.
Triethylamine (6.06 g, 60 mmol) was added. The formed solution was cooled to room temperature and washed with water (2x150 mL) . The organic phase was dried over anhydrous sodium sulfate and filtered. The above solution was cooled on an ice bath. 98 % m-CPBA (5.02 g, 29 mmol) was added in portions over 25 min. After further stirring for 40 min. chloroform was distilled off in vacuum. Remaining chloroform was removed by evaporation in vacuum with toluene to give a fat crystalline suspension.
The above suspension was dissolved in dry tetrahydrofuran (150 mL) and cooled on an ice bath. Potassium- t-butylate (13.4 g, 120 mmol) was added in portions over 30 min. After further stirring for 10 min., 4- methoxy-2, 3 , 5-trimethyl-pyridine-N-oxide (5.52 g, 30 mmol) was added. The dark green reaction mixture was stirred for 15 min. , whereupon acetic acid was added (5.4 g, 90 mmol) . The suspension was evaporated in vacuum, and the formed residue was dissolved in chloro- form (100 mL) - water (100 mL) . The water phase was extracted with further chloroform (100 mL) . The chloroform phases were washed successively with aqueous 10% sodium chloride (50 mL) . The combined chloroform phases were dried over anhydrous sodium sulfate and evaporated in vacuum. The residue was taken up in methanol (100 mL) and cooled to -20°C. The precipitate was filtered off, washed with methanol and dried at 50 °C to give 4.68 g (43 % over 3 steps) of omeprazole-N-oxide as a white product. Mp . 172-3°C (dec).
Example 3. 5-Methoxy-2- \ \ (4-methoxy-3 , 5-dimethyl- 1-oxido-2 -pyridinyl) methyl] sulfinyl] -IH-benzimidazole (Omeprazole-N-oxide) (from mixed isomers) .
In a similar manner to the procedures described in examples 1 and 2, the title compound was obtained from a mixture of the N-cyclohexyl-2 , 3-dihydro-5- and -6- methoxy-2 - thioxo- IH-benzimidazole- 1 -carboxamides , prepared from 2-mercapto-5-methoxy-benzimidazole and cyclohexylisocyanate, essentially following the procedure described by E. Dyer et al . , J. Heterocyclic Chemistry 6 (1969) .23-28.
Example 4. 5-Methoxy-2- \ \ (4 -methoxy-3 , 5-dimethyl - 2-pyridinyl) methyl] sulfinyl] -IH-benzimidazole (Omeprazole) .
Pulverized omeprazole-N-oxide (3.61 g, 10.0 mmol)
(Ex. 1, 2 and 3) and 4 , 4 ' -thiobismorpholine (2.65 g, 13.0 mmol) (synthesized from sodium thiosulfate penta- hydrate, bromine and morpholine as described by J. L. Kice et al, J. Org . Chem. 56 (1991) 5235-6) were suspended in methanol (70 mL) and cooled on an ice bath. 2.83 N hydrogen chloride in ethanol (7.4 mL, 21.0 mmol) was added. After stirring for 20 min., a clear yellowish solution was obtained. IN sodium hydroxide (20 mL) was added and the resulting solution was evaporated in vacuum to about 25 mL. To the residue was added water (100 mL) and t-butylmethylether (50 mL) . The pH was adjusted to 12 with IN sodium hydroxide. After stirring for 20 min. at pH 12, the phases were separated and acetic acid was added slowly to the water phase until a pH 7.8 was obtained. After stirring at room temperature the precipitate was filtered off, washed with water and dried at 50°C to give 3.24 g (94 %) of omeprazole as a beige coloured powder. Mp . 153- 4°C (dec.) . The FTIR-spectra of the product and an authentic sample were identical . Calc. for C17H19N303S : C:59.1%; H:5.6%; N:12.2%; S:9.3%. Found: C:59.1%; H:5.6%; N:12.1%; S:9.6%.
Preparation of Omeprazole sodium salt.
Omeprazole (3.45 g, 10.0 mmol) was suspended in methanol (15 mL) . Sodium methoxide (540 mg, 10.0 mmol) was added, whereby a new precipitate was formed. After addition of t-butylmethylether (50 mL) the precipitate was filtered off, washed with t-butylmethylether and dried to give 3.7 g of omeprazole sodium salt as a white product .
Example 5. 5-Methoxy-2- [ [ (4-methoxy-3 , 5-dimethyl- 2 -pyridinyl) methyl1 sulfinyl] -IH-benzimidazole (Omeprazole) .
Example 4 was repeated, but using 1, 1 ' -thiobis- piperidine (synthesized from sodium thiosulfate penta- hydrate, bromine and piperidine as described by J. L. Kice et al, J. Org . Chem. 56 (1991) 5235-6) as the reducing agent. Yield 91%. Mp . 154-5°C (dec). Calc. for C17H19N303S : C:59.1%; H:5.6%; N:12.2%; S:9.3%. Found: C:59.1%; H:5.6%; N:12.2%; S:9.5%.
Example 6. 2- [ (2-pyridinylmethyl) sulfinyl] -1H- benzimidazole-N-oxide (Timoprazole-N-oxide) .
A. 2 -Cyclohexyl -1 , 2 , 4-thiadiazolo .4 , 5-a] benz- imidazole-3 (2H) -one.
N- Cyclohexyl -2 , 3 -dihydro-2 -thioxo- IH-benzimidazole- 1-carboxamide (27.5 g, 100 mmol) (Ex. B) was sus- pended in chloroform (400 mL) at room temperature. Bromine (16.0 g, 100 mmol) in chloroform (100 mL) was added over 50 min. at room temperature, whereupon triethylamine (20.2 g, 200 mmol) was added. The formed solution was cooled to room temperature and washed with water (2x300 mL) . The organic phase was dried over anhydrous sodium sulfate and then evaporated in vacuum (bath 25 °C) into a fat crystalline suspension. Petroleum benzine (bp. 80-100°C) was added. The formed precipitate was filtered off, washed with petroleum benzine and dried in vacuum at 35°C to give 24.3 g (89 %) of the title compound as an off-white product. Mp . 202-6°C.
B. 2- T (2 -pyridinylmethyl) sulfinyl] -lH-benzimida- zole-N-oxide (Timoprazole-N-oxide) (2 steps in situ) .
2 -Cyclohexyl -1, 2 , 4-thiadiazolo [4, 5-a] benzimida- zole-3 (2H) -one (8.2 g, 30 mmol) (Ex. 6A) was dissolved in chloroform (180 mL) and cooled on an ice bath. 99% m-CPBA (5.19 g, 30 mmol) was added in portions over 25 min. Chloroform was distilled off in vacuum (bath 40°C) , until a fat suspension was obtained. Remaining chloroform was removed by evaporation with toluene (100 mL) in vacuum.
The resulting fat suspension of crude "sulfinami- de" was dissolved in dry tetrahydrofuran (150 mL) and cooled on an ice bath. Potassium-t-butylate (13.4 g, 120 mmol) was added in portions over 15 min. After further stirring for 10 min., 2-picoline-N-oxide (4.4 g, 40 mmol) was added. The resulting reaction mixture was stirred for 30 min., whereupon acetic acid (5.4 g, 90 mmol) was added. The mixture was evaporated into a fat suspension in vacuum and then methanol (180mL) was added followed by cooling on an ice bath. The precipitate was filtered off, washed with methanol and dried at 50°C to give 5.05 g (62 % over 2 steps) of timopra- zole-N-oxide as an off-white product. Mp. 187-8°C (dec.) .
Calc. for C13H11N302S: C:57.1%; H:4.1%; N:15.4%; S:11.7%. Found: C:57.1%; H:4.1%; N:15.0%; S:11.6%.
Example 7. 2-Cyclohexyl -1 , 2 , 4-thiadiazolo [4 , 5- a] benzimidazole-3 (2H) -one-1-oxide .
2 - Cyclohexyl -1 , 2 , 4-thiadiazolo [4 , 5-a] benzimida- zole-3 (2H) -one (21.8 g, 80 mmol) (Ex. 6A) was dissolved in chloroform (300 mL) and cooled on an ice bath. 85% m-CPBA (16.2 g, 80 mmol) dissolved in chloroform (100 mL) was added over 35 min. The ice bath was removed and the temperature was allowed to rise to room temperature over 1 h. Chloroform was distilled off in vacuum and low temperature until a fat suspension was obtained.
Ethanol (250 mL) was added. After stirring on an ice bath the precipitate was filtered off and washed with cold ethanol. Drying at 30°C gave 20.1 g (87 %) of the title compound as a white product. Mp. 158-160°C. Calc. for C14H15N302S: C:58.1%; H:5.2%; N:14.5%; S:ll.l%. Found: C:58.2%; H:5.3%; N:14.4%; S:11.2%.
Example 8. 2 -Cyclohexyl -1 , 2 , 4-thiadiazolo [4 , 5- a] benzimidazole-3 (2H) -one-1-oxide (2 steps in situ).
N- Cyclohexyl -2 , 3 -dihydro-2 -thioxo- IH-benzimidazole- 1-carboxamide (68.8 g, 250 mmol) (Ex. B) was suspended in chloroform (1.0 L) at room temperature. Bromine (40.0 g, 250 mmol) was added over 30 min. at 23-30°C. Triethylamine (50.5 g, 500 mmol) was added. The formed solution was cooled to room temperature and stirred for 1 h and then washed with water (2x500 mL) . The organic phase was dried over anhydrous sodium sulfate.
The above solution was cooled on an ice bath. 98 % m-CPBA (43.3 g, 250 mmol) dissolved in chloroform (200 mL) was added over 30 min. at 3-8°C. After further stirring for 30 min. chloroform was distilled off in vacuum (bath 40°C) until a fat suspension (about 250 mL) was obtained, t-Butylmethylether (1 L) was added. After cooling on an ice bath the precipitate was filtered off and washed with t-butylmethylether . Drying at 30°C in vacuum gave 61.2 g (85 % over 2 steps) of the title compound as an off-white product. Mp . 155- 7°C.
Calc. for C14H15N302S : C:58.1%; H:5.2%; N:14.5%; S:ll.l%. Found: C:58.6%; H:5.4%; N:14.4%; S:11.2%.
Example 9. 2- \ \ r3-methyl-4- (2 , 2 , 2-trifluoroethoxy) -1-oxido-2 -pyridinyl] methyl] sulfinyl] -IH-benzimidazole (Lansoprazole-N-oxide) .
2 -Cyclohexyl- 1, 2 , 4-thiadiazolo [4 , 5-a] benzimida- zole-3 (2H) -one-1-oxide (28.9 g, 100 mmol) (Ex. 7 and 8) was dissolved in dry tetrahydrofuran (300 mL) and cooled on an ice bath. Potassium-t-butylate (28.0 g, 250 mmol) was added in portions over 40 min. After further stirring for 10 min. 2 , 3 -dimethyl -4- (2 , 2 , 2- trifluoroethoxy) pyridine-N-oxide (13.3 g, 60 mmol) was added. The reaction mixture was stirred for 15 min, whereupon acetic acid (9.0 g, 150 mmol) was added. The mixture was evaporated in vacuum, and the formed residue was dissolved in 1-butanol-toluene (2:3) (250 mL) - water (250 mL) and acetic acid was added until a pH of 7.0 was obtained. The phases were separated and the organic phase was evaporated. The formed fat suspension was taken up in methanol (200 mL) and cooled on an ice bath. The precipitate was filtered off and washed with methanol followed by water. Drying at 50°C gave 7.9 g of crude lansoprazole-N-oxide. The product was shortly heated to reflux in chloroform (100 mL) and then cooled to room temperature. The crystals were filtered off, washed with chloroform and dried to give 5.3 g (23 %) of lansoprazole-N-oxide as an off-white crystalline product. Mp . 183-3 °C (dec). Calc for C16H14F3N303S : C:49.9%; H:3.7%; N:10.9%; S:8.3% Found: C:50.3%; H:3.8%; N:10.8%; S:8.5%.
Example 10. 2- [ [3-methyl-4- (2 , 2 , 2-trifluoroethoxy) -2 -pyridinyl) methyl] sulfinyl] -IH-benzimidazole (Lansoprazole) .
Lansoprazole-N-oxide (3.85 g, 10.0 mmol) (Ex. 9) and 4 , 4 ' -thiobismorpholine (2.85 g, 14.0 mmol) (synthesized from sodium thiosulfate pentahydrate, bromine and morpholine as described by J. L. Kice et al , J. Org. Chem. 56 (1991) 5235-6) were suspended in methanol (80 L) at room temperature. 2.85 N hydrogen chloride in ethanol (8.4 mL, 24 mmol) was added over 3 min. After stirring for 90 min. the formed solution was evaporated in vacuum to about 25 mL and water (100 mL) was added slowly. The pH was adjusted to 7.5 with IN sodium hydroxide. After stirring at room temperature the formed precipitate was filtered off and washed with water. Drying at 40°C gave 3.57 g (97 %) of a 94 % pure lansoprazole. Mp . 169-70°C (dec). Recrystallization from acetone gave analytically pure lansoprazole as a white crystalline product. Mp . 176-7°C (dec). The FTIR-spectra of the product and an authentic sample were identical.
Calc. for C16H14F3N302S: C:52.0%; H:3.8%; N:11.4%; S:8.7% Found: C:52.2%; H:4.0%; N:ll.l%; S:8.8%.
Example 11. 2- [ f (4-methoxy-3 , 5-dimethyl-l-oxido- 2-pyridinyl) methyl] sulfinyl] -IH-benzimidazole .
2-Cyclohexyl-l, 2 , 4 -thiadiazolo [ , 5-a] benzimida- zole-3 (2H) -one-1-oxide (11.6 g, 40 mmol) (Ex. 7 and 8) was suspended in dry tetrahydrofuran (150 mL) and cooled on an ice bath. Potassium-t-butylate (13.4 g, 120 mmol) was added in portions over 25 min. After further stirring for 5 min. 4-methoxy-2 , 3 , 5-trimethyl- pyridine-N-oxide (5.4 g, 24 mmol) was added. The dark green solution was stirred for 30 min. , whereupon acetic acid (4.8 g, 80 mmol) was added. The reaction mixture was evaporated in vacuum to a fat suspension (about 50 mL) and then 1-butanol-toluene (1:3) (80 mL) and water (150 mL) were added. The pH was adjusted to 12 with UN sodium hydroxide. The water phase was washed with further 1-butanol-toluene (1:3) (80 mL) and then adjusted to pH 7.7 by slowly addition of acetic acid. The resulting suspension was cooled on an ice bath. The precipitate was filtered off and washed with water. Drying at 50°C gave 7.0 g of the crude title compound. The product was shortly stirred with methanol (80 mL) at room temperature and then cooled to -20°C. The product was filtered off, washed with methanol and dried at 50°C to give 6.3 g (59 %) of the title com- pound as an off-white powder. Mp . 183-4° (dec.) .
Calc for C16H17N303S : C:58.0%; H:5.2%; N:12.7%; S:9,7%. Found: C:57.9%; H:5.4%; N:12.8%; S:9.8%.
Example 12. 2- [ [ (4-methoxy-3 , 5 -dimethyl -2 -pyridi- nyl) methyl] sulfinyl] -IH-benzimidazole.
2- [ [ (4 -Methoxy-3, 5 -dimethyl -1-oxido-2 -pyridinyl) - methyl] sulfinyl] -IH-benzimidazole (3.31 g, 10.0 mmol)
(Ex. 11) and 4 , 4 ' -thiobismorpholine (2.86 g, 14.0 mmol) (synthesized from sodium thiosulfate pentahydrate, bromine and morpholine as described by J. L. Kice et al, J. Org. Chem. 56 (1991) 5235-6) were suspended in methanol (75 mL) and cooled on an ice bath. 2.83 N hydrogen chloride in ethanol (7.4 mL, 21.0 mmol) was added. The reaction was monitored by HPLC . After stirring for 1J_ h and 2y2 h further thiobismorpholine (0.82 g and 0.41 g) and 2.83 N hydrogen chloride in ethanol (2.8 mL and 1.4 mL) was added. After further stirring for 30 min. IN sodium hydroxide (33 mL) was added. The reaction mixture was evaporated in vacuum to about 35 mL and then water (100 mL) and t -butylmethylether (50 mL) were added. The pH was adjusted to 12 with IN sodium hydroxide. After stirring at pH 12.0 for 5 min. the phases were separated. The water phase was washed with t-butylmethylether (50 mL) and then acetic acid was added slowly until pH 8.0. The formed suspension was extracted with 1-butanol-toluene (1:1) (120 mL) at 30 °C. The organic phase was dried over anhydrous sodium sulfate and then evaporated in vacuum to about 35 L. Cooling to 5°C, filtration, washing with 1- butanol and drying at 50 °C gave 2.41 g (77 %) of the title compound as a white crystalline product. Mp . 164- 5°C (dec.) .
Calc. for C16H17N302S: C:60.9%; H:5.4%; N:13.3%; S:10.2%. Found: C:61.1%; H:5.6%; N:13.3%; S:10.0%.
Another crop 0.21 g (7 %) of the title compound (96 % purity) could be obtained from the mother liquor.
Example 13. 5-Methoxy-2- \ \ (4-chloro-3 , 5-dimethyl- l-oxido-2-pyridinyl) methyl] sulfinyl] -IH-benzimidazole .
The title compound was prepared in 3 steps from N- cyclohexyl-2 , 3-dihydro-5-methoxy-2-thioxo-lH-benzimida- zole-1-carboxamide and 4-chloro-2 , 3 , 5-trimethyl-pyri- dine-N-oxide in 40 % yield essentially following the procedure described for omeprazole-N-oxide (Ex. 2) . Mp . 188-9°C (dec.) .
60MHz XH-NMR (d6-DMS0) : δ 2.2 (s, 3H, CH3) , δ 2.3
(s, 3H, CH3) , δ 3.8 (s, 3H, CH3) , δ 4.8 (broad s, 2H, CH2) , δ 6.7-7.0 (m, 2H) , δ 7.3-7.5 (m, IH) , δ 8.3 (IH).
Example 14.5-Methoxy-2- \ \ (4 -methoxy-3 , 5 -dimethyl - l-oxido-2-pyridinyl) methyl] sulfinyl] -IH-benzimidazole (Omeprazole N-oxide) .
A mixture of 5-methoxy-2- [[ (4-chloro-3 , 5-dimethyl - 1-oxido-2 -pyridinyl) methyl] sulfinyl] -IH-benzimidazole (2.196 g, 6 mmol) (Ex. 13), potassium tert . -butylate (3.36 g, 30 mmol), tert . -butyl ammonium bromide (5.76 g, 18 mmol) , methanol (36 mL) and dimethyl sulfoxide (12 mL) was heated to reflux for 18 h. HPLC chromato- gram (area %) indicates 67 % yield of 5-methoxy-2- [ [ (4- methoxy-3 , 5-dimethyl-1-oxido-2-pyridinyl) methyl] sulfinyl] -IH-benzimidazole and 6 % unconverted 5-methoxy-2 - [ [ (4-chloro-3 , 5-dimethyl -1-oxido-2 -pyridinyl) methyl] - sulfinyl] -IH-benzimidazole.
The reaction mixture was poured into water (40 mL) , and pH was adjusted to 7.0 with acetic acid (1.35 mL) . Then chloroform (50 mL) was added. After separ- ation of the water phase, the chloroform phase was washed with water (2 x 50 mL) and dried over magnesium sulf te. After removal of the magnesium sulfate by filtering, hexane in excess (50 mL) was added. The reaction mixture was left for crystallisation for 1 h, after which the crystals were removed by filtering, washed with hexane (25 mL) and dried.
Yield of crude product: 844 mg of white crystals. Mp. 169 - 70 °C. Purity according to HPLC (area %) , 90 %. Calc. for C17H19N304S : C:56.5%; H:5.3%; N:11.6% Found: C:55.5%; H:5.1%; N:11.3%
The NMR data correspond to those of an authentic sample .
From the mother liquor a further crop of 131 mg of white crystals was isolated. Mp . 168 - 70 °C. Purity according to HPLC: 88.5 %.
Total yield 975 mg .
In the preceding the invention has been described by means of specific examples of preferred embodiments.
However, it will be appreciated by a person skilled in the art that various modifications can be made without deviating from the spirit and scope of the invention.

Claims

P A T E N T C L A I M S 1. A process for the preparation of 2- [ [ (2 -pyridinyl) methyl] sulfinyl] -IH-benzimidazole derivatives of the general formula V
wherein
R2 represents H, 0CH3, 0CHF2 or CF3 , R3 represents H, CH3 or OCH3,
R4 represents H, 0CH3, OCH2CF3, halo or nitro, R5 represents H, CH3 or OCH3, and n is 0 or 1, or salts thereof, c h a r a c t e r i z e d in comprising the steps of : i) cyclizing a 2 , 3-dihydro-2-thioxo-lH-benzimida- zole-1-carboxamide of the general formula I
wherein R1 represents branched or straight alkyl, C3_8-cycloalkyl , aryl, aralkyl having 1-8 C-atoms in the alkyl moiety, or a 5- or 6-membered heterocyclic group having one, two or three hetero atoms selected from nitrogen, sulfur and oxygen in the heterocyclic ring, and
R2 have the same meanings as defined for formula V and is located in the 5- or 6-position of the benz- imidazole nucleus, by oxidation in a suitable solvent so as to form a 1, 2 , 4-thiadiazolo [4, 5-a] benzimidazole-3 (2H) -one of the general formula II,
wherein R1 and R2 are as defined above, and the R2 group is located in the 6- or 7-position of the condensed ring, ii) oxidizing the obtained compound of formula II so as to form a 1, 2 , 4-thiadiazolo [4 , 5-a] benzimidazole- 3 (2H) -one-1-oxide of the general formula III,
wherein R1 and R2 are as defined above, and the R2 group is located in the 6- or 7 -position of the condensed ring, and iii) reacting the obtained compound of formula III with a pyridine-N-oxide of the general formula IV
wherein R3, R4 and R5 are as defined above, in the presence of an alcoholate, so as to form a 2- [ (2-pyri- dinylmethyl) sulfinyl] -IH-benzimidazole derivative of the general formula Va
wherein R2, R3, R4 and R5 are as defined above, and, if desired, converting a compound obtained in free form into a salt thereof, or vice versa, a compound of any of the formulae I, II, III and Va, if desired, being converted into a different compound of said formula before the reaction in the next step is carried out, and furthermore, if desired, iv) reducing the obtained compound of formula Va or a salt thereof into a compound of the general formula Vb,
wherein R2, R3, R4 and R5 are as defined above, and, if desired, converting a compound obtained in free form into a salt thereof, or vice versa.
2. A process according to claim 1, wherein the oxidation in step i) is carried out with an oxidation agent selected from bromine, chlorine and sulfuryl chloride.
3. A process according to claim 1 or 2 , wherein the oxidation in step i) is followed by addition of a trialkylamine base, preferably triethylamine.
4. A process according to one or more of the preceding claims, wherein the oxidation in step i) is carried out at a temperature from -20┬░C - 70┬░C, preferably from 0┬░C - 40┬░C.
5. A process according to one or more of the preceding claims, wherein the oxidation in step ii) is carried out using a peroxy-type oxidation agent.
6. A process according to claim 5, wherein the peroxy-type oxidation agent is selected from peracids, preferably optionally substituted perbenzoic acids, alkylhydroperoxides, benzoylperoxides, hydrogenper- oxide, tetraalkylammonium meta-periodates and perborates .
7. A process according to one or more of the preceding claims, wherein the oxidation in step ii) is carried out at a temperature from -70┬░C - 70┬░C, prefer- ably from -20┬░C - 30┬░C.
8. A process according to one or more of the preceding claims, wherein the alcoholate used in step iii) is an alkali metal alcoholate, preferably potassium t-butoxide.
9. A process according to one or more of the preceding claims, wherein the reaction in step iii) is carried out at a temperature from -70┬░C - 50┬░C, preferably from -30┬░C - 30┬░C.
10. A process according to one or more of the preceding claims, wherein the steps i) and ii) , the steps ii) and iii) or the steps i) , ii) and iii) are carried out in situ.
11. A process according to one or more of the preceding claims, wherein the reduction in step iv) is carried out using a thiobisamine, dialkoxysulfane,
RaNi/H2 or Ru-catalyst/H2 as reducing agent.
12. A process according to claim 11, wherein the reduction in step iv) is carried out using a thiobisamine as reducing agent .
13. A process according to claim 12, wherein the thiobisamine is used in a molar ratio to the compound of formula (Va) of 0.8 - 5.0, particularly in a molar ratio of 1.0 - 2.5 and preferably in a molar ratio of 1.0 - 1.5. 5
14. A process according to claim 12 or 13, wherein the reduction is carried out in an alcoholic solvent, preferably in a methanolic and/or ethanolic solvent .
15. A process according to one or more of claims 10 12 - 14, wherein the reduction is carried out in the presence of a mineral acid, preferably hydrochloric acid and/or sulphuric acid.
16. A process according to one or more of claims 12 - 15, wherein the reduction is carried out at a
15 temperature in the range from -50┬░C - 70┬░C, preferably in the range from -10 ┬░C - 40┬░C.
17. A compound of the general formula Va
wherein R2, R3, R4 and R5 are as defined above, or a 25 salt thereof, with the provisos that R2, R3, R4 and R5 are not all hydrogen, that when R3 is methyl and R4 is 2, 2, 2-trifluoroethoxy, then R2 and R5 are not both hydrogen, and that when R3 and R5 are both CH3, then R2 and R4 are not both 0CH3. 30 18. A compound according to claim 17, wherein
R2 represents 0CHF2, R3 and R4 represent 0CH3 and R5 represents H.
19. A compound according to claim 17, wherein R2 represents 0CH3, R3 and R5 represent CH3 and R4 35 represents Cl .
20. A compound of the general formula III,
wherein R1 and R2 are as defined above, and the R2 group is located in the 6- or 7-position of the con- densed ring.
21. A compound of the general formula II,
wherein R1 and R2 are as defined in claim 20, with the proviso that R2 is other than H, and wherein the R2 group is located in the 6- or 7-position of the condensed ring.
22. A compound of the general formula I,
wherein R1 and R2 are as defined in claim 21.
23. A compound according to claim 20, 21 or 22, wherein R1 is cyclohexyl.
24. The use of a compound of the general formula Va
wherein
R2 represents H, OCH3, OCHF2 or CF3,
R3 represents H, CH3 or OCH3,
R4 represents H, OCH3, OCH2CF3, halo or nitro, and
R5 represents H, CH3 or OCH3, or a salt thereof, for the preparation of a compound of the general formula Vb
wherein R2, R3 , R4 and R5 are as defined above, or a salt thereof.
EP98902961A 1997-03-07 1998-02-16 Process for the preparation of 2- (2-pyridinyl)methyl]sulfinyl]-1h-benzimidazoles and novel compounds of use for such purpose Withdrawn EP0968205A1 (en)

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SE510643C2 (en) * 1997-06-27 1999-06-14 Astra Ab Thermodynamically stable omeprazole sodium form B
US6166213A (en) * 1998-08-11 2000-12-26 Merck & Co., Inc. Omeprazole process and compositions thereof
US6191148B1 (en) 1998-08-11 2001-02-20 Merck & Co., Inc. Omerazole process and compositions thereof
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EP1921075B1 (en) * 2006-10-30 2010-03-03 Dipharma Francis S.r.l. A process for the preparation of pyridine-methylsulfinyl compounds
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