EP0796325A1 - Human vascular ibp-like growth factor - Google Patents

Human vascular ibp-like growth factor

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Publication number
EP0796325A1
EP0796325A1 EP95905378A EP95905378A EP0796325A1 EP 0796325 A1 EP0796325 A1 EP 0796325A1 EP 95905378 A EP95905378 A EP 95905378A EP 95905378 A EP95905378 A EP 95905378A EP 0796325 A1 EP0796325 A1 EP 0796325A1
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EP
European Patent Office
Prior art keywords
vigf
polypeptide
polynucleotide
dna
cells
Prior art date
Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
Withdrawn
Application number
EP95905378A
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German (de)
French (fr)
Other versions
EP0796325A4 (en
Inventor
Gregg A. Hastings
Craig A. Rosen
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Human Genome Sciences Inc
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Human Genome Sciences Inc
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Application filed by Human Genome Sciences Inc filed Critical Human Genome Sciences Inc
Publication of EP0796325A1 publication Critical patent/EP0796325A1/en
Publication of EP0796325A4 publication Critical patent/EP0796325A4/en
Withdrawn legal-status Critical Current

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    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07KPEPTIDES
    • C07K14/00Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof
    • C07K14/435Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof from animals; from humans
    • C07K14/475Growth factors; Growth regulators
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61PSPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
    • A61P3/00Drugs for disorders of the metabolism
    • A61P3/06Antihyperlipidemics
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61PSPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
    • A61P35/00Antineoplastic agents
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61PSPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
    • A61P43/00Drugs for specific purposes, not provided for in groups A61P1/00-A61P41/00
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61KPREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
    • A61K38/00Medicinal preparations containing peptides
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12NMICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
    • C12N2799/00Uses of viruses
    • C12N2799/02Uses of viruses as vector
    • C12N2799/021Uses of viruses as vector for the expression of a heterologous nucleic acid
    • C12N2799/026Uses of viruses as vector for the expression of a heterologous nucleic acid where the vector is derived from a baculovirus

Definitions

  • This invention relates to newly identified polynucleotides, polypeptides encoded by such polynucleotides, the use of such polynucleotides and polypeptides, as well as the production of such polynucleotides and polypeptides.
  • the invention also relates to inhibiting the action of such polypeptides.
  • the polypeptide of the present invention is related to a family of growth regulators comprising cef 10/cyr 61 , connective tissue growth factor (CTGF), and nov , as well as the insulin-like growth factor binding protein (IBP) family which modulates the activity of insulin-like growth factor (IGF).
  • CTGF connective tissue growth factor
  • IBP insulin-like growth factor binding protein
  • the mRNA corresponding to the polypeptide of this invention is highly expressed in vascular cell-types, thus, this polypeptide is hereinafter referred to as human vascular IBP-like growth factor or "VIGF".
  • Growth factors and other mitogen ⁇ are capable of rapidly inducing a complex set of genes to be expressed by certain cells (Lau, L.F. and Nathans, D. , Molecular Aspects of Cellular Regulation, 6:165-202 (1991).
  • These genes which have been named immediate early or early response genes, are transcriptionally activated within minutes after contact with a growth factor or mitogen, independent of de novo protein synthesis.
  • a group of these immediate early genes encodes secreted, extracellular proteins which are needed for coordination of complex biological processes such as differentiation and proliferation, regeneration and wound healing (Ryseck, R.P. et al, Cell Growth Differ., 2:235-233 (1991) .
  • Highly related proteins which belong to this group include cef 10 from chicken, which was detected after induction by the viral oncogene pp60 v " ,rc (Simmons, D.L. et al, PNAS, U.S.A., 86:1178-1182 (1989).
  • a closely related protein, cyr 61 is rapidly activated by serum or platelet- derived growth factor (PDGF) (O'Brien, T.P. et al, Mol. Cell Biol.. 10:3569-3577 (1990).
  • PDGF platelet- derived growth factor
  • the overall amino acid identity between cef 10 and cyr 61 is as high as 83%.
  • a third member is human connective tissue growth factor (CTGF) (Bradha , D.M. et al., J.
  • CTGF is a cysteine-rich peptide which is secreted by human vascular endothelial cells in high levels after activation with transforming growth factor beta (TGF- ⁇ ). CTGF exhibits PDGF- like biological and im unological activities and competes with PDGF for a particular cell surface receptor.
  • a fourth member of the immediate-early proteins is fisp-12 , which has been shown to be induced by serum and has been mapped to a region of the murine genome (Ryseck, R.P. et al., Cell Growth Differ., 2:235-233 (1991).
  • Yet another member of this family is the chicken gene, nov , normally arrested in adult kidney cells, which was found to be overexpressed in yeloblastosis-associated virus type 1 induced nephroblasto as. Further, expression of an a ino- terminal-truncated nov product in chicken embryo fibroblasts was sufficient to induce transformation (Joliot, V. et al. , Mol. Cell. Biol., 12:10-21 (1992).
  • This emerging family of growth regulators is called the CCN family for C.TGF; cef 10 /cyr 61 ; and nov .
  • the VIGF polypeptide of the present invention is thought to be a member of this family of growth regulators.
  • the VIGF polypeptide also contains a stretch of cysteines which is highly homologous to insulin-like growth factor (IGF)-binding protein.
  • IGF-binding protein 53 has been identified in adult human serum, namely, IGF-binding protein 53 and IGF-binding protein 1.
  • the IGF-binding proteins have both stimulatory and inhibitory effects on IGF. Clemmons, et al, J. Clin. Invest., 77:1548 (1986) showed increased binding to fibrobla ⁇ t and smooth muscle cell surface receptors of IGF in complex with its binding protein.
  • the inhibitory effects of IGF-binding protein on various IGF actions in vitro have been shown and they include stimulation of glucose transport by adipocytes, sulfate incorporation by chondrocytes and thy idine incorporation in fibroblast (Zapf, et al., J. Clin. Invest., 63:1077 (1979)).
  • IGF-binding proteins on growth factor mediated mitogen activity in normal cells has been shown.
  • a novel mature polypeptide which is VIGF, as well as biologically active and diagnostically or therapeutically useful fragments, analogs and derivatives thereof.
  • isolated nucleic acid molecules encoding human VIGF including RNAs, DNAs, cDNAs, genomic DNAs as well as analogs and biologically active and diagnostically or therapeutically useful fragments and derivatives thereof.
  • a process for producing such polypeptide by recombinant techniques comprising culturing recombinant prokaryotic and/or eukaryotic host cells, containing a human VIGF nucleic acid sequence, under conditions promoting expression of said protein and subsequent recovery of said protein.
  • a process of utilizing such polypeptide, or polynucleotide encoding such polypeptide for therapeutic purposes for example, to treat muscle wasting diseases, osteoporosis, to aid in implant fixation, to stimulate wound healing or tissue regeneration, to promote angiogenesis and to proliferate vascular smooth muscle and endothelial cell production.
  • antagonists to such polypeptides which may be used to inhibit the action of such polypeptides, for example, to limit the production of excess connective tissue during wound healing or pulmonary fibrosi ⁇ .
  • nucleic acid probes comprising nucleic acid molecules of sufficient length to specifically hybridize to VIGF sequences.
  • diagnostic assays for detecting diseases related to the under-expression and over-expression of the VIGF polypeptide and mutations in the nucleic acid sequences encoding such polypeptide are provided.
  • Figure 1 shows the cDNA and corresponding deduced amino acid sequence of the VIGF polypeptide.
  • the initial 21 amino acids represent the putative leader sequence such that the mature polypeptide comprises 163 amino acids.
  • the standard one letter abbreviations for amino acids are used. Sequencing was performed using a 373 Automated DNA sequencer (Applied Biosystems, Inc.). Seqeuncing accuracy is predicted to be greater than 97% accurate.
  • Figure 2 shows the amino acid sequence homology between VIGF and other proteins which are members of the CCN family.
  • Figure 3 shows an SDS-polyacrylamide gel which displays the results of VIGF bacterial purification and electrophoresis.
  • Figure 4 shows a gel which displays the results of a Northern Blot analysis performed on VIGF.
  • Figure 5 shows a gel which displays the results of a cell-type analysis of VIGF gene expression in the various tissues displayed.
  • Lane 1 is umbilical " vein endothelial cells
  • Lane 2 is aortic smooth muscle cells
  • Lane 3 is dermal foreskin fibroblast cells.
  • Figure 5A shows the results after a two hour exposure
  • Figure 5B shows the results after a thirty-six hour exposure.
  • nucleic acid which encodes for the mature polypeptide having the deduced amino acid sequence of Figure 1 or for the mature polypeptide encoded by the cDNA of the clone deposited as ATCC Deposit No. 75874 on August 25, 1994.
  • a polynucleotide encoding a polypeptide of the present invention may be obtained from human umbilical vein and aortic endothelial cells, aortic smooth muscle cells, and pulmonary artery.
  • the polynucleotide of this invention was discovered in a cDNA library derived from human umbilical vein endothelial cells. It is structurally related to the IBP and CCN families. It contains an open reading frame encoding a protein of 184 amino acid residues of which approximately the first 21 amino acids residues are the putative leader sequence such that the mature protein comprises 163 amino acids.
  • VIGF as a hybrid member of both the CCN growth factor and IBP families was based primarily through conservation of amino acid sequences. Similarity of VIGF to the CCN family is inferred because of the 40-45% similarity over the entire polypeptide, 12 of a total of 18 VIGF cysteines are conserved, and 94% identity with the IBP signature (GCGCCXXCAXXXXXXC) which is perfectly conserved in every member of the CCN family.
  • the VIGF polypeptide also has significant similarity to the IBP family. In two adjacent regions, amino acids 30-44 (IBP signature) and 55-69, there is at least 80% identity to the IBP family. These regions are contained within the putative IGF binding domain of the IBP ⁇ .
  • the human tissue and cell-type specific expression has been determined by Northern blot analysis. The 2.3-2.4 kb VIGF mRNA is localized in the adult lung and kidney a ⁇ ⁇ hown u ⁇ ing the procedure of Example 4. VIGF gene expression was undetectable in heart, brain, placenta, liver, skeletal u ⁇ cle, and pancrea ⁇ .
  • the polynucleotide of the present invention may be in the form of RNA or in the form of DNA, which DNA includes cDNA, genomic DNA, and synthetic DNA.
  • the DNA may be double- stranded or single-stranded, and if single stranded may be the coding strand or non-coding (anti-sen ⁇ e) ⁇ trand.
  • the coding sequence which encodes the mature polypeptide may be identical to the coding sequence shown in Figure 1 or that of the deposited clone or may be a different coding sequence which coding sequence, as a result of the redundancy or degeneracy of the genetic code, encodes the same mature polypeptide as the DNA of Figure 1 or the deposited cDNA.
  • the polynucleotide which encodes for the mature polypeptide of Figure 1 or for the mature polypeptide encoded by the deposited cDNA may include: only the coding sequence for the mature polypeptide; the coding sequence for the mature polypeptide and additional coding sequence such as a leader or secretory sequence or a proprotein sequence; the coding sequence for the mature polypeptide (and optionally additional coding sequence) and non-coding sequence, such as introns or non-coding sequence 5' and/or 3' of the coding sequence for the mature polypeptide.
  • polynucleotide encoding a polypeptide encompasses a polynucleotide which includes only coding sequence for the polypeptide as well as a polynucleotide which includes additional coding and/or non-coding sequence.
  • the present invention further relates to variants of the hereinabove described polynucleotides which encode for fragments, analogs and derivatives of the polypeptide having the deduced amino acid sequence of Figure 1 or the polypeptide encoded by the cDNA of the deposited clone.
  • the variant of the polynucleotide may be a naturally occurring allelic variant of the polynucleotide or a non-naturally occurring variant of the polynucleotide.
  • the present invention includes polynucleotides encoding the same mature polypeptide as shown in Figure 1 or the same mature polypeptide encoded by the cDNA of the deposited clone as well as variants of such polynucleotides which variants encode for a fragment, derivative or analog of the polypeptide of Figure 1 or the polypeptide encoded by the cDNA of the deposited clone.
  • Such nucleotide variants include deletion variant ⁇ , substitution variants and addition or insertion variant ⁇ .
  • the polynucleotide may have a coding sequence which is a naturally occurring allelic variant of the coding sequence shown in Figure 1 or of the coding sequence of the deposited clone.
  • an allelic variant is an alternate form of a polynucleotide sequence which may have a substitution, deletion or addition of one or more nucleotides, which does not ⁇ ubstantially alter the function of the encoded polypeptide.
  • the present invention also includes polynucleotides, wherein the coding sequence for the mature polypeptide may be fused in the same reading frame to a polynucleotide sequence which aids in expres ⁇ ion and ⁇ ecretion of a polypeptide from a ho ⁇ t cell, for example, a leader ⁇ equence which functions as a secretory sequence for controlling transport of a polypeptide from the cell.
  • the polypeptide having a leader sequence is a preprotein and may have the leader sequence cleaved by the ho ⁇ t cell to form the mature form of the polypeptide.
  • the polynucleotides may also encode for a proprotein which is the mature protein plus additional 5' amino acid residue ⁇ .
  • the polynucleotide of the pre ⁇ ent invention may encode for a mature protein, or for a protein having a pro ⁇ equence or for a protein having both a prosequence and a pre ⁇ equence (leader sequence).
  • the polynucleotides of the present invention may also have the coding sequence fused in frame to a marker sequence which allows for purification of the polypeptide of the present invention.
  • the marker sequence may be a hexa- histidine tag supplied by a pQE-9 vector to provide for purification of the mature polypeptide fused to the marker in the case of a bacterial host, or, for example, the marker sequence may be a hemagglutinin (HA) tag when a mammalian host, e.g. COS-7 cells, i ⁇ used.
  • the HA tag corresponds to an epitope derived from the influenza hemagglutinin protein (Wilson, I., et al.. Cell, 37:767 (1984)).
  • the present invention further relates to polynucleotides which hybridize to the hereinabove-described sequences if there is at least 50% and preferably 70% identity between the sequences.
  • the present invention particularly relates to polynucleotides which hybridize under stringent conditions to the hereinabove-described polynucleotides .
  • stringent conditions means hybridization will occur only if there i ⁇ at least 95% and preferably at least 97% identity between the sequences.
  • polynucleotides which hybridize to the hereinabove described polynucleotides in a preferred embodiment encode polypeptides which retain ⁇ ub ⁇ tantially the same biological function or activity as the mature polypeptide encoded by the cDNA of Figure 1 or the deposited cDNA.
  • the present invention further relates to a VIGF polypeptide which has the deduced amino acid sequence of Figure 1 or which has the amino acid sequence encoded by the deposited cDNA, a ⁇ well as fragments, analogs and derivative ⁇ of such polypeptide.
  • fragment when referring to the polypeptide of Figure 1 or that encoded by the depo ⁇ ited cDNA, mean ⁇ a polypeptide which retain ⁇ essentially the same biological function or activity a ⁇ such polypeptide.
  • an analog includes a proprotein which can be activated by cleavage of the proprotein portion to produce an active mature polypeptide.
  • the polypeptide of the present invention may be a recombinant polypeptide, a natural polypeptide or a synthetic polypeptide, preferably a recombinant polypeptide.
  • the fragment, derivative or analog of the polypeptide of Figure 1 or that encoded by the depo ⁇ ited cDNA may be (i) one in which one or more of the amino acid residues are substituted with a conserved or non-conserved amino acid residue (preferably a conserved amino acid residue) and such substituted amino acid residue may or may not be one encoded by the genetic code, or (ii) one in which one or more of the amino acid residues includes a ⁇ ub ⁇ tituent group, or (iii) one in which the mature polypeptide is fused with another compound, such a ⁇ a compound to increa ⁇ e the half-life of the polypeptide (for example, polyethylene glycol), or (iv) one in which the additional amino acids are fu ⁇ ed to the mature polypeptide, such as a leader or secretory sequence or a sequence which is employed for purification of the mature polypeptide or a proprotein sequence.
  • Such fragments, derivative ⁇ and analog ⁇ are deemed to be within the ⁇
  • polypeptides and polynucleotides of the present invention are preferably provided in an isolated form, and preferably are purified to homogeneity.
  • isolated means that the material is removed from its original environment (e.g., the natural environment if it is naturally occurring) .
  • a naturally- occurring polynucleotide or polypeptide present in a living animal i ⁇ not isolated, but the same polynucleotide or polypeptide, separated from some or all of the coexisting materials in the natural system, is isolated.
  • Such polynucleotides could be part of a vector and/or such polynucleotides or polypeptides could be part of a composition, and still be isolated in that such vector or composition is not part of it ⁇ natural environment.
  • the present invention also relates to vectors which include polynucleotides of the present invention, host cell ⁇ which are genetically engineered with vectors of the invention and the production of polypeptides of the invention by recombinant techniques.
  • Host cells are genetically engineered (transduced or transformed or transfected) with the vectors of this invention which may be, for example, a cloning vector or an expression vector.
  • the vector may be, for example, in the form of a plasmid, a viral particle, a phage, etc.
  • the engineered host cells can be cultured in conventional nutrient media modified as appropriate for activating promoters, selecting transformant ⁇ or amplifying the VIGF genes.
  • the culture conditions, such a ⁇ temperature, pH and the like, are those previously used with the host cell selected for expression, and will be apparent to the ordinarily skilled artisan.
  • the polynucleotides of the present invention may be employed for producing polypeptides by recombinant technique ⁇ . Thu ⁇ , for example, the polynucleotide may be included in any one of a variety of expression vectors for expressing a polypeptide.
  • Such vectors include chromosomal, nonchro osomal and synthetic DNA sequence ⁇ , e.g., derivative ⁇ of SV40; bacterial plasmids; phage DNA; baculovirus; yeast plasmid ⁇ ; vector ⁇ derived from c ⁇ mbination ⁇ of plasmid ⁇ and phage DNA, viral DNA such as vaccinia, adenovirus, fowl pox virus, and pseudorabie ⁇ .
  • any other vector may be used a ⁇ long a ⁇ it is replicable and viable in the host.
  • the appropriate DNA sequence may be inserted into the vector by a variety of procedures.
  • the DNA sequence i ⁇ inserted into an appropriate restriction endonuclease site(s) by procedures known in the art. Such procedure ⁇ and others are deemed to be within the scope of those skilled in the art.
  • the DNA sequence in the expression vector is operatively linked to an appropriate expression control sequence(s) (promoter) to direct mRNA synthesi ⁇ .
  • promoter A ⁇ repre ⁇ entative example ⁇ of such promoters, there may be mentioned: LTR or SV40 promoter, the E. coli. lac or trp, the phage lambda P L promoter and other promoters known to control expression of genes in prokaryotic or eukaryotic cells or their viruses.
  • the expre ⁇ sion vector also contains a ribo ⁇ ome binding site for translation initiation and a transcription terminator.
  • the vector may also include appropriate sequences for amplifying expre ⁇ sion.
  • the expres ⁇ ion vectors preferably contain one or more ⁇ electable marker genes to provide a phenotypic trait for ⁇ election of transformed host cells such as dihydrofolate reductase or neomycin resistance for eukaryotic cell culture, or such as tetracycline or ampicillin resistance in E. coli.
  • the vector containing the appropriate DNA sequence as hereinabove described, a ⁇ well a ⁇ an appropriate promoter or control ⁇ equence, may be employed to transform an appropriate host to permit the ho ⁇ t to express the protein.
  • a ⁇ repre ⁇ entative example ⁇ of appropriate ho ⁇ t ⁇ there may be mentioned: bacterial cells, ⁇ uch as E. coli, Streptomyces, Salmonella typhimuriu-n; fungal cells, ⁇ uch a ⁇ yea ⁇ t; in ⁇ ect cell ⁇ ⁇ uch a ⁇ Dro ⁇ ophila S2 and Sf9; animal cells such as CHO, COS or Bowe ⁇ melanoma; adenoviru ⁇ e ⁇ ; plant cell ⁇ , etc.
  • the ⁇ election of an appropriate ho ⁇ t is deemed to be within the scope of those skilled in the art from the teachings herein.
  • the present invention also includes recombinant constructs comprising one or more of the sequences a ⁇ broadly de ⁇ cribed above.
  • the con ⁇ truct ⁇ comprise a vector, such a ⁇ a plasmid or viral vector, into which a sequence of the invention has been inserted, in a forward or reverse orientation.
  • the construct further comprises regulatory sequence ⁇ , including, for example, a promoter, operably linked to the sequence.
  • regulatory sequence ⁇ including, for example, a promoter, operably linked to the sequence.
  • Bacterial pQE70, pQE60, pQE-9 (Qiagen), pBS, pDIO, phagescript, p ⁇ iX174, pbluescript SK, pBSKS, pNH8A, pNH16a, pNH18A, pNH46A (Stratagene); pTRC99a, pKK223- 3, pKK233-3, pDR540, pRIT5 (Pharmacia).
  • Eukaryotic pWLNEO, pSV2CAT, pOG44, pXTl, pSG (Stratagene) pSVK3, pBPV, pMSG, pSVL (Pharmacia). However, any other plasmid or vector may be used a ⁇ long a ⁇ they are replicable and viable in the ho ⁇ t.
  • Promoter region ⁇ can be ⁇ elected from any desired gene using CAT (chloramphenicol transferase) vectors or other vectors with selectable markers.
  • Two appropriate vectors are PKK232-8 and PCM7.
  • Particular named bacterial promoters include lad, lacZ, T3, T7, gpt, lambda P justify, P, and trp.
  • Eukaryotic promoters include CMV immediate early, HSV thymidine kinase, early and late SV40, LTRs from retrovirus, and mouse metallothionein-I. Selection of the appropriate vector and promoter is well within the level of ordinary skill in the art.
  • the present invention relate ⁇ to ho ⁇ t cells containing the above-described constructs.
  • the host cell can be a higher eukaryotic cell, such as a mammalian cell, or a lower eukaryotic cell, such a ⁇ a yeast cell, or the ho ⁇ t cell can be a prokaryotic cell, such as a bacterial cell.
  • Introduction of the construct into the host cell can be effected by calcium phosphate transfection, DEAE- Dextran mediated tran ⁇ fection, or electroporation (Davi ⁇ , L. , Dibner, M., Battey, I., Ba ⁇ ic Methods in Molecular Biology, (1986)) .
  • constructs in host cells can be used in a conventional manner to produce the gene product encoded by the recombinant sequence.
  • the polypeptides of the invention can be synthetically produced by conventional peptide synthesizers.
  • Mature proteins can be expressed in mammalian cells, yea ⁇ t, bacteria, or other cell ⁇ under the control of appropriate promoters. Cell-free translation systems can also be employed to produce such proteins u ⁇ ing RNA ⁇ derived from the DNA con ⁇ tructs of the present invention. Appropriate cloning and expres ⁇ ion vectors for use with prokaryotic and eukaryotic hosts are described by Sambrook, et al.. Molecular Cloning: A Laboratory Manual, Second Edition, Cold Spring Harbor, N.Y., (1989), the disclo ⁇ ure of which i ⁇ hereby incorporated by reference.
  • Enhancers are ci ⁇ -acting element ⁇ of DNA, u ⁇ ually about from 10 to 300 bp that act on a promoter to increa ⁇ e its transcription.
  • Example ⁇ including the SV40 enhancer on the late side of the replication origin bp 100 to 270, a cytomegalovirus early promoter enhancer, the polyoma enhancer on the late side of the replication origin, and adenoviru ⁇ enhancer ⁇ .
  • recombinant expression vectors will include origins of replication and selectable markers permitting transformation of the ho ⁇ t cell, e.g., the ampicillin resistance gene of E. coli and S. cerevisiae TRP1 gene, and a promoter derived from a highly-expressed gene to direct transcription of a downstream structural sequence.
  • promoters can be derived from operons encoding glycolytic enzymes such as 3-phosphoglycerate kinase (PGK), ⁇ -factor, acid phosphatase, or heat shock proteins, among other ⁇ .
  • the heterologou ⁇ structural sequence is assembled in appropriate phase with translation initiation and termination sequences, and preferably, a leader sequence capable of directing secretion of translated protein into the periplasmic space or extracellular medium.
  • the heterologous ⁇ equence can encode a fu ⁇ ion protein including an N-terminal identification peptide imparting desired characteristics, e.g., stabilization or simplified purification of expressed recombinant product.
  • Useful expression vectors for bacterial use are constructed by inserting a structural DNA sequence encoding a desired protein together with suitable translation initiation and termination signals in operable reading phase with a functional promoter.
  • the vector will comprise one or more phenotypic selectable markers and an origin of replication to ensure maintenance of the vector and to, if desirable, provide amplification within the host.
  • Suitable prokaryotic hosts for transformation include E. coli. Bacillus ⁇ ubtili ⁇ . Salmonella typhi urium and various specie ⁇ within the genera P ⁇ eudomona ⁇ , Streptomyce ⁇ , and Staphylococcu ⁇ , although other ⁇ may al ⁇ o be employed a ⁇ a matter of choice.
  • u ⁇ eful expre ⁇ ion vector ⁇ for bacterial u ⁇ e can compri ⁇ e a ⁇ electable marker and bacterial origin of replication derived from commercially available pla ⁇ mid ⁇ comprising genetic elements of the well known cloning vector pBR322 (ATCC 37017).
  • cloning vector pBR322 ATCC 37017
  • Such commercial vectors include, for example, pKK223-3 (Pharmacia Fine Chemicals, Uppsala, Sweden) and GEM1 (Promega Biotec, Madison, Wl, USA). These pBR322 "backbone" sections are combined with an appropriate promoter and the structural sequence to be expressed.
  • the selected promoter is induced by appropriate means (e.g., temperature ⁇ hift or chemical induction) and cell ⁇ are cultured for an additional period.
  • appropriate means e.g., temperature ⁇ hift or chemical induction
  • Cell ⁇ are typically harve ⁇ ted by centrifugation, di ⁇ rupted by phy ⁇ ical or chemical means, and the resulting crude extract retained for further purification.
  • Microbial cells employed in expres ⁇ ion of protein ⁇ can be di ⁇ rupted by any convenient method, including freeze-thaw cycling, sonication, mechanical disruption, or use of cell lysing agent ⁇ , such methods are well know to those skilled in the art.
  • mammalian cell culture systems can also be employed to express recombinant protein.
  • mammalian expression sy ⁇ tems include the COS-7 line ⁇ of monkey kidney fibrobla ⁇ ts, described by Gluzman, Cell, 23:175 (1981), and other cell lines capable of expre ⁇ ing a compatible vector, for example, the C127, 3T3, CHO, HeLa and BHK cell line ⁇ .
  • Mammalian expre ⁇ sion vectors will comprise an origin of replication, a suitable promoter and enhancer, and also any nece ⁇ ary ribo ⁇ ome binding ⁇ ite ⁇ , polyadenylation ⁇ ite, ⁇ plice donor and acceptor ⁇ ite ⁇ , transcriptional termination sequence ⁇ , and 5' flanking nontranscribed sequences.
  • DNA sequence ⁇ derived from the SV40 splice, and polyadenylation sites may be used to provide the required nontranscribed genetic elements.
  • the VIGF polypeptides can be recovered and purified from recombinant cell cultures by methods including ammonium sulfate or ethanol precipitation, acid extraction, anion or cation exchange chromatography, phosphocellulo ⁇ e chromatography, hydrophobic interaction chromatography, affinity chromatography, hydroxylapatite chromatography and lectin chromatography. Protein refolding steps can be used, as necessary, in completing configuration of the mature protein. Finally, high performance liquid chromatography (HPLC) can be employed for final purification steps.
  • HPLC high performance liquid chromatography
  • polypeptides of the present invention may be a naturally purified product, or a product of chemical synthetic procedures, or produced by recombinant technique ⁇ from a prokaryotic or eukaryotic host (for example, by bacterial, yeast, higher plant, insect and mammalian cells in culture) .
  • a prokaryotic or eukaryotic host for example, by bacterial, yeast, higher plant, insect and mammalian cells in culture
  • the polypeptides of the present invention may be glycosylated or may be non-glycosylated.
  • Polypeptides of the invention may also include an initial methionine amino acid residue.
  • This VIGF polypeptide of the present invention may be employed in wound-healing and associated therapies concerned with re-growth of tissue, such as connective tissue, skin, bone, cartilage, muscle, lung or kidney.
  • VIGF polypeptide may also be employed to enhance the growth of vascular smooth muscle and endothelial cell ⁇ leading to the ⁇ timulation of angiogenesis.
  • the VIGF- mediated increase in angiogenesis would be beneficial to ischemic tissues and to collateral coronary development in the heart subsequent to coronary stenosis.
  • VIGF polypeptide may also be employed during implant fixation to stimulate the growth of cell ⁇ around the implant and therefore, facilitate it ⁇ attachment to it ⁇ intended site.
  • VIGF polypeptide may also be employed to increase IGF stability in ti ⁇ ue ⁇ or in serum. It may also increase binding to the IGF receptor. Since IGF has been shown in vitro to enhance human marrow erythroid and granulocytic progenitor cell growth, VIGF polypeptide may also be employed to stimulate erythropoiesis or granulopoiesis.
  • polypeptides or polynucleotides encoding such polypeptides, as a research reagent for in vitro purposes related to scientific research, synthesi ⁇ of DNA and manufacture of DNA vectors, for the purpose of developing therapeutics and diagnostics for the treatment of human disea ⁇ e.
  • Fragments of the full length VIGF gene may be used as a hybridization probe for a cDNA library to isolate the full length VIGF gene and to isolate other genes which have a high sequence similarity to the VIGF gene or similar biological activity.
  • Probe ⁇ of thi ⁇ type can be, for example, between 20 and 2000 ba ⁇ e pair ⁇ . Preferably, however, the probe ⁇ have between 30 and 50 bases.
  • the probe may also be used to identify a cDNA clone corresponding to a full length transcript and a genomic clone or clone ⁇ that contain the complete VIGF gene including regulatory and promotor regions, exons, and introns.
  • An example of a ⁇ creen comprises isolating the coding region of the VIGF gene by using the known DNA sequence to synthe ⁇ ize an oligonucleotide probe.
  • Labeled oligonucleotide ⁇ having a ⁇ equence complementary to that of the gene of the pre ⁇ ent invention are used to screen a library of human cDNA, genomic DNA or mRNA to determine which members of the library the probe hybridize ⁇ to.
  • This invention provides a method for identification of the receptor for VIGF.
  • the gene encoding the receptor can be identified by numerous methods known to those of ⁇ kill in the art, for example, ligand panning and FACS ⁇ orting (Coligan, et al., Current Protocols in I mun., 1(2), Chapter 5, (1991)).
  • expre ⁇ sion cloning is employed wherein polyadenylated RNA is prepared from a cell responsive to VIGF, and a cDNA library created from thi ⁇ RNA i ⁇ divided into pool ⁇ and u ⁇ ed to transfect COS cell ⁇ or other cell ⁇ that are not re ⁇ pon ⁇ ive to VIGF. Transfected cells which are grown on glass slides are exposed to labeled VIGF.
  • VIGF can be labeled by a variety of means including iodination or inclusion of a recognition site for a site-specific protein kinase. Following fixation and incubation, the slides are subjected to autoradiographic analysis. Positive pools are identified and ⁇ ub-pool ⁇ are prepared and retran ⁇ fected u ⁇ ing an iterative ⁇ ub-pooling and rescreening process, eventually yielding a single clone that encodes the putative receptor.
  • labeled VIGF can be photoaffinity linked with cell membrane or extract preparations that expres ⁇ the receptor molecule.
  • Cross-linked material is resolved by PAGE and exposed to X- ray film.
  • the labeled complex containing the VIGF-receptor can be excised, resolved into peptide fragments, and subjected to protein microsequencing.
  • the amino acid sequence obtained from microsequencing would be used to design a set of degenerate oligonucleotide probes to screen a cDNA library to identify the gene encoding the putative receptor.
  • This invention is also related to a method of screening compounds to identify those which mimic VIGF (agonist ⁇ ) or prevent the effect of VIGF.
  • An example of such a method takes advantage of the ability of VIGF to stimulate the proliferation of endothelial cells in the presence of the comitogen Con A.
  • Human umbilical vein endothelial cells are obtained and cultured in 96-well flat-bottomed culture plates (Costar, Cambridge, MA) and supplemented with a reaction mixture appropriate for facilitating proliferation of the cell ⁇ , the mixture containing Con-A (Calbioche , La Jolla, CA) .
  • VIGF antagoni ⁇ t ⁇ may be detected by combining VIGF and a potential antagoni ⁇ t with membrane-bound VIGF receptor ⁇ or recombinant receptor ⁇ under appropriate condition ⁇ for a competitive inhibition a ⁇ say.
  • VIGF can be labeled, such as by radioactivity, ⁇ uch that the number of VIGF molecules bound to the receptor can determine the effectivenes ⁇ of the potential antagonist.
  • VIGF receptor a mammalian cell or membrane preparation expres ⁇ ing the VIGF receptor would be incubated with labeled VIGF in the pre ⁇ ence of the compound. The ability of the compound to enhance or block thi ⁇ interaction could then be mea ⁇ ured. ALternatively, VIGF, labelled IGF and a potential compound could be incubated under condition ⁇ where VIGF would naturally bind to IGF. The extent of thi ⁇ interaction could be mea ⁇ ured to determine if the compound i ⁇ an effective antagoni ⁇ t or agonist.
  • VIGF antagonists include an antibody, or in some cases, an oligonucleotide, which binds to the polypeptide.
  • a potential antagonist may be a closely related protein, for example, a mutated form of VIGF, which recognizes the VIGF receptor but imparts no effect, thereby competitively inhibiting the action of VIGF.
  • Another potential VIGF antagonist is an antisense construct prepared using antisense technology.
  • Antisense technology can be used to control gene expression through triple-helix formation or antisen ⁇ e DNA or RNA, both of which method ⁇ are ba ⁇ ed on binding of a polynucleotide to DNA or RNA.
  • the 5' coding portion of the polynucleotide sequence which encodes for the mature polypeptides of the present invention, is used to design an antisense RNA oligonucleotide of from about 10 to 40 base pairs in length.
  • a DNA oligonucleotide i ⁇ de ⁇ igned to be complementary to a region of the gene involved in transcription triple helix -see Lee et al. , Nucl.
  • the antisense RNA oligonucleotide hybridizes to the mRNA in vivo and blocks translation of the mRNA molecule into the VIGF (antisense - Okano, J. Neurochem., 56:560 (1991); Oligodeoxynucleotide ⁇ as Antisense Inhibitors of Gene Expression, CRC Press, Boca Raton, FL (1988)).
  • the oligonucleotides described above can also be delivered to cells such that the antisense RNA or DNA may be expressed in vivo to inhibit production of VIGF.
  • VIGF antagonist ⁇ include small molecules which bind to the active site, the receptor binding site, IGF or other growth factor binding site of the polypeptide thereby blocking the normal biological activity of VIGF.
  • small molecules include but are not limited to small peptides or peptide-like molecules.
  • the antagonists may be employed to inhibit tumor neovascularization and the neointimal proliferation of smooth muscle cells prevalent in atherosclerosis and resteno ⁇ i ⁇ ⁇ ubsequent to balloon angiopla ⁇ ty.
  • the antagoni ⁇ ts may also be employed to inhibit the over production of scar tissue seen in a keloid which forms after surgery, fibrosis after myocardial infarction, or fibrotic le ⁇ ion ⁇ associated with pulmonary fibrosis.
  • the antagonists may be employed in a composition with a pharmaceutically acceptable carrier, e.g., as hereinafter de ⁇ cribed.
  • compositions comprise a therapeutically effective amount of the polypeptide, and a pharmaceutically acceptable carrier or excipient.
  • a carrier includes but i ⁇ not limited to saline, buffered saline, dextrose, water, glycerol, ethanol, and combinations thereof. The formulation should suit the mode of administration.
  • the invention also provides a pharmaceutical pack or kit comprising one or more containers filled with one or more of the ingredients of the pharmaceutical composition ⁇ of the invention.
  • a pharmaceutical pack or kit comprising one or more containers filled with one or more of the ingredients of the pharmaceutical composition ⁇ of the invention.
  • Associated with such container( ⁇ ) can be a notice in the form prescribed by a governmental agency regulating the manufacture, use or sale of pharmaceuticals or biological products, which notice reflects approval by the agency of manufacture, use or sale for human administration.
  • the pharmaceutical compositions may be employed in conjunction with other therapeutic compound ⁇ .
  • the pharmaceutical compo ⁇ itions may be administered in a convenient manner such a ⁇ by the oral, topical, intravenous, intraperitoneal, intramuscular, subcutaneous, intrana ⁇ al or intradermal route ⁇ .
  • the pharmaceutical compo ⁇ itions are administered in an amount which is effective for treating and/or prophylaxis of the specific indication. In general, they are admini ⁇ tered in an amount of at lea ⁇ t about 10 ⁇ g/kg body weight and in most cases they will be admini ⁇ tered in an amount not in excess of about 8 mg/Kg body weight per day. In mo ⁇ t cases, the dosage is from about 10 ⁇ g/kg to about 1 mg/kg body weight daily, taking into account the routes of administration, symptoms, etc.
  • VIGF in combination with other growth factors including but not limited to, PDGF, IGF, FGF, EGF or TGF-3 may accelerate physiological responses as seen in wound healing.
  • VIGF polypeptide and agonists and antagonists which are polypeptides, may also be employed in accordance with the present invention by expression of such polypeptides in vivo , which is often referred to as "gene therapy.”
  • cells from a patient may be engineered with a polynucleotide (DNA or RNA) encoding a polypeptide ex vivo, with the engineered cells then being provided to a patient to be treated with the polypeptide.
  • a polynucleotide DNA or RNA
  • cell ⁇ may be engineered by procedures known in the art by use of a retroviral particle containing RNA encoding a polypeptide of the present invention.
  • cells may be engineered in vivo for expression of a polypeptide in vivo by, for example, procedures known in the art.
  • a producer cell for producing a retroviral particle containing RNA encoding the polypeptide of the present invention may be administered to a patient for engineering cells in vivo and expression of the polypeptide in vivo.
  • the expression vehicle for engineering cells may be other than a retrovirus, for example, an adenoviru ⁇ which may be used to engineer cells in vivo after combination with a suitable delivery vehicle.
  • Thi ⁇ invention i ⁇ al ⁇ o related to the use of the VIGF gene a ⁇ a diagno ⁇ tic. Detection of a mutated form of VIGF will allow a diagno ⁇ i ⁇ of a disease or a su ⁇ ceptibility to a disease, such as a tumor, since mutations in VIGF may cause tumors.
  • Nucleic acids for diagnosis may be obtained from a patient's cells, such as from blood, urine, saliva, tis ⁇ ue biopsy and autop ⁇ y material.
  • the genomic DNA may be used directly for detection or may be amplified enzymatically by using PCR (Saiki et ai., Nature, 324:163-166 (1986)) prior to analysis.
  • RNA or cDNA may also be used for the same purpose.
  • PCR primer ⁇ complementary to the nucleic acid encoding VIGF can be used to identify and analyze VIGF mutations.
  • deletion ⁇ and in ⁇ ertions can be detected by a change in size of the amplified product in comparison to the normal genotype.
  • Point mutation ⁇ can be identified by hybridizing amplified DNA to radiolabeled VIGF RNA or alternatively, radiolabeled VIGF anti ⁇ en ⁇ e DNA sequences. Perfectly matched sequences can be distinguished from mismatched duplexes by RNase A digestion or by differences in melting temperature ⁇ .
  • DNA sequence differences may be achieved by detection of alteration in electrophoretic mobility of DNA fragments in gels with or without denaturing agents. Small sequence deletions and insertions can be visualized by high resolution gel electrophoresis. DNA fragments of different sequences may be distinguished on denaturing formamidine gradient gel ⁇ in which the obilitie ⁇ of different DNA fragments are retarded in the gel at different po ⁇ ition ⁇ according to their ⁇ pecific melting or partial melting temperature ⁇ ( ⁇ ee, e.g., Myer ⁇ et al . , Science, 230:1242 (1985)).
  • Sequence changes at specific locations may also be revealed by nuclease protection assays, ⁇ uch a ⁇ RNa ⁇ e and SI protection or the chemical cleavage method (e.g., Cotton et al . , PNAS, USA, 85:4397-4401 (1985)).
  • the detection of a specific DNA sequence may be achieved by methods such as hybridization, RNa ⁇ e protection, chemical cleavage, direct DNA ⁇ equencing or the use of restriction enzymes, (e.g., Restriction Fragment Length Polymorphisms (RFLP)) and Southern blotting of genomic DNA.
  • restriction enzymes e.g., Restriction Fragment Length Polymorphisms (RFLP)
  • VIGF protein expre ⁇ sion may be linked to vascular disease or neovascularization associated with tumor formation.
  • VIGF has a signal peptide and the mRNA is highly expressed in endothelial cells and to a lesser extent in smooth muscle cells which indicates that the protein is present in serum. Accordingly, an anti-VIGF antibody could be used to diagnose vascular disea ⁇ e or neova ⁇ cularization associated with tumor formation since an altered level of this polypeptide may be indicative of such disorders.
  • a competition assay may be employed wherein antibodies specific to VIGF is attached to a solid support and labeled VIGF and a sample derived from the host are passed over the solid support and the amount of label detected attached to the solid ⁇ upport can be correlated to a quantity of VIGF in the sample.
  • the sequence ⁇ of the pre ⁇ ent invention are also valuable for chromosome identification.
  • the ⁇ equence i ⁇ specifically targeted to and can hybridize with a particular location on an individual human chromosome.
  • Few chromosome marking reagents based on actual sequence data (repeat polymorphisms) are presently available for marking chromosomal location.
  • the mapping of DNAs to chromosomes according to the present invention is an important first step in correlating tho ⁇ e ⁇ equence ⁇ with gene ⁇ a ⁇ sociated with disea ⁇ e.
  • ⁇ equence ⁇ can be mapped to chromosomes by preparing PCR primers (preferably 15-25 bp) from the cDNA. Computer analy ⁇ i ⁇ of the 3' untran ⁇ lated region i ⁇ u ⁇ ed to rapidly select primers that do not span more than one exon in the genomic DNA, thus complicating the amplification process. These primer ⁇ are then u ⁇ ed for PCR ⁇ creening of ⁇ omatic cell hybrid ⁇ containing individual human chromo ⁇ ome ⁇ . Only those hybrids containing the human gene corresponding to the primer will yield an amplified fragment. PCR mapping of somatic cell hybrids is a rapid procedure for assigning a particular DNA to a particular chromosome.
  • mapping ⁇ trategie ⁇ that can ⁇ imilarly be used to map to its chromosome include in situ hybridization, pre ⁇ creening with labeled flow- ⁇ orted chromosomes and preselection by hybridization to construct chromosome specific-cDNA libraries.
  • Fluorescence in situ hybridization (FISH) of a cDNA clone to a metaphase chromosomal spread can be used to provide a precise chromosomal location in one step.
  • This technique can be used with cDNA a ⁇ ⁇ hort a ⁇ 500 or 600 ba ⁇ es; however, clones larger than 2,000 bp have a higher likelihood of binding to a unique chromosomal location with sufficient signal intensity for simple detection.
  • FISH requires use of the clones from which the EST was derived, and the longer the better. For example, 2,000 bp i ⁇ good, 4,000 i ⁇ better, and more than 4,000 i ⁇ probably not nece ⁇ sary to get good results a reasonable percentage of the time.
  • Verma et al. Human Chromosomes: a Manual of Basic Techniques, Pergamon Press, New York (1988).
  • a cDNA precisely localized to a chromosomal region associated with the disease could be one of between 50 and 500 potential causative genes. (Thi ⁇ assumes 1 megaba ⁇ e mapping re ⁇ olution and one gene per 20 kb) .
  • the polypeptide ⁇ , their fragment ⁇ or other derivative ⁇ , or analogs thereof, or cells expressing them can be used as an immunogen to produce antibodie ⁇ thereto.
  • antibodie ⁇ can be, for example, polyclonal or monoclonal antibodie ⁇ .
  • the pre ⁇ ent invention al ⁇ o include ⁇ chimeric, single chain, and humanized antibodies, as well as Fab fragments, or the product of an Fab expres ⁇ ion library. Variou ⁇ procedures known in the art may be used for the production of such antibodies and fragment ⁇ .
  • Antibodies generated against the polypeptides corresponding to a sequence of the present invention can be obtained by direct injection of the polypeptides into an animal or by administering the polypeptides to an animal, preferably a nonhuman. The antibody so obtained will then bind the polypeptide ⁇ itself. In this manner, even a sequence encoding only a fragment of the polypeptides can be used to generate antibodies binding the whole native polypeptides. Such antibodies can then be u ⁇ ed to isolate the polypeptide from tis ⁇ ue expre ⁇ ing that polypeptide.
  • any technique which provide ⁇ antibodies produced by continuous cell line cultures can be used. Examples include the hybridoma technique (Kohler and Mil ⁇ tein, 1975, Nature, 256:495-497), the trioma technique, the human B-cell hybridoma technique (Kozbor et al., 1983, Immunology Today 4:72), and the EBV- hybridoma technique to produce human monoclonal antibodie ⁇ (Cole, et al., 1985, in Monoclonal Antibodie ⁇ and Cancer Therapy, Alan R. Li ⁇ , Inc., pp. 77-96).
  • Technique ⁇ de ⁇ cribed for the production of ⁇ ingle chain antibodie ⁇ (U.S. Patent 4,946,778) can be adapted to produce single chain antibodies to immunogenic polypeptide products of thi ⁇ invention.
  • Al ⁇ o, transgenic mice may be used to express humanized antibodies to immunogenic polypeptide products of this invention.
  • Plasmids are designated by a lower case p preceded and/or followed by capital letters and/or numbers.
  • the starting pla ⁇ mids herein are either commercially available, publicly available on an unre ⁇ tricted basis, or can be constructed from available pla ⁇ mid ⁇ in accord with published procedure ⁇ .
  • equivalent plasmids to those de ⁇ cribed are known in the art and will be apparent to the ordinarily ⁇ killed arti ⁇ an.
  • “Digestion” of DNA refers to catalytic cleavage of the DNA with a restriction enzyme that acts only at certain sequences in the DNA.
  • the various restriction enzymes used herein are commercially available and their reaction conditions, cofactors and other requirements were u ⁇ ed a ⁇ would be known to the ordinarily ⁇ killed arti ⁇ an.
  • For analytical purpo ⁇ es typically 1 ⁇ g of plasmid or DNA fragment is used with about 2 units of enzyme in about 20 ⁇ l of buffer solution.
  • For the purpose of isolating DNA fragments for plasmid construction typically 5 to 50 ⁇ g of DNA are digested with 20 to 250 units of enzyme in a larger volume. Appropriate buffers and substrate amounts for particular restriction enzymes are specified by the manufacturer. Incubation times of about 1 hour at 37 * C are ordinarily used, but may vary in accordance with the supplier's instructions. After digestion the reaction is electrophoresed directly on a polyacrylamide gel to isolate the desired fragment.
  • Size separation of the cleaved fragments is performed u ⁇ ing 8 percent polyacrylamide gel described by Goeddel, D. et al . , Nucleic Acids Res., 8:4057 (1980).
  • Oligonucleotide ⁇ refer ⁇ to either a single stranded polydeoxynucleotide or two complementary polydeoxynucleotide strands which may be chemically synthesized. Such synthetic oligonucleotides have no 5' phosphate and thus will not ligate to another oligonucleotide without adding a phosphate with an ATP in the presence of a kinase. A synthetic oligonucleotide will ligate to a fragment that has not been dephosphorylated.
  • Ligase refers ⁇ to the proce ⁇ of forming pho ⁇ phodie ⁇ ter bond ⁇ between two double ⁇ tranded nucleic acid fragments (Maniati ⁇ , T., et al., Id., p. 146). Unless otherwise provided, ligation may be accomplished using known buffers and conditions with 10 units of T4 DNA ligase ("ligase”) per 0.5 ⁇ g of approximately equimolar amounts of the DNA fragments to be ligated.
  • ligase T4 DNA ligase
  • transformation wa ⁇ performed a ⁇ described in the method of Graham, F. and Van der Eb, A., Virology, 52:456-457 (1973).
  • the DNA sequence encoding VIGF was initially amplified using PCR oligonucleotide primers corresponding to the 5' sequence ⁇ of the processed VIGF protein (minus the signal peptide sequence) and the vector sequences 3' to the VIGF gene. Additional nucleotides corresponding to VIGF were added to the 5' and 3' sequence ⁇ respectively.
  • the 5' oligonucleotide primer has the sequence 5' CGCAAGCTTAAATAATTATGCGGTGGACTGC 3' contains a Hind III restriction enzyme site (in bold) followed by 21 nucleotide ⁇ of VIGF coding sequence starting from the presumed terminal amino acid of the processed protein codon (underlined).
  • the 3' oligonucleotide primer 5' CGCTCTAGftTCAGCGTGGATTTAACCA 3' contains an Xba I re ⁇ triction ⁇ ite (in bold) followed by the reverse complement of nucleotides corresponding to the carboxy-terminal 5 amino acids and the tran ⁇ lational ⁇ top codon (underlined).
  • the re ⁇ triction enzyme ⁇ ite ⁇ corre ⁇ pond to the re ⁇ triction enzyme ⁇ ite ⁇ on the bacterial expres ⁇ ion vector pQE-9 (Qiagen, Inc. Chatsworth, CA, ) .
  • pQE-9 encodes antibiotic resistance (Amp r ), a bacterial origin of replication (ori), an IPTG-regulatable promoter operator (P/0), a ribosome binding site (RBS), a 6-His tag and restriction enzyme ⁇ ite ⁇ .
  • the VIGF PCR product and pQE-9 were then digested with Hind III and Xba I and ligated together with T4 DNA ligase.
  • the de ⁇ ired recombinant ⁇ would contain the VIGF coding ⁇ equence in ⁇ erted down ⁇ tream from the pQE-9 encoded histidine tag and the ribosome binding ⁇ ite.
  • the ligation mixture wa ⁇ then u ⁇ ed to tran ⁇ for E.
  • M15[pREP4] (Qiagen, Inc.) by the procedure de ⁇ cribed in Sambrook, J. et al., Molecular Cloning: A Laboratory Manual, Cold Spring Laboratory Pre ⁇ , (1989).
  • M15[pREP4] contain ⁇ multiple copie ⁇ of the pla ⁇ id pREP4, which expre ⁇ e ⁇ the lad repre ⁇ or and al ⁇ o confer ⁇ kanamycin resistance (Kan r ) .
  • Transformants were identified by their ability to grow on LB plates and ampicillin/kanamycin resistant colonies were selected. Plasmid DNA was isolated and confirmed by restriction analy ⁇ i ⁇ .
  • Clones containing the desired constructs were grown overnight (O/N) in liquid culture in LB media supplemented with both Amp (100 ug/ml) and Kan (25 ug/ml).
  • the O/N culture was used to inoculate a large culture at a ratio of 1:100 to 1:250.
  • the cell ⁇ were grown to an optical density 600 (O.D. 600 ) of between 0.4 and 0.6.
  • IPTG Isopropyl-B-D-thiogalacto pyranoside
  • IPTG Isopropyl-B-D-thiogalacto pyranoside
  • IPTG induces by inactivating the lad repressor, clearing the P/O leading to increased gene expression.
  • Cells were grown an extra 3 to 4 hour ⁇ ⁇ uch that there is an exponential growth culture present.
  • the VIGF/6-Histidine-containing M15[pREP4] cell ⁇ were lysed in 6M GnHCl,50 mM NaP0 4 at pH 8.0.
  • the ly ⁇ ate was loaded on a Nickel-Chelate column and the flow-through collected. The column was washed with 6M GnHCl, 50 mM NaP0 4 at pH 8.0, 6.0 and 5.0.
  • the VIGF fusion protein (>90% pure) was eluted at pH 2.0.
  • the DNA sequence encoding the full length VIGF protein, ATCC # 75874, is digested with the restriction enzymes PvuII and Xbal.
  • the 639 nucleotide PvuII, Xbal fragment contains the entire VIGF coding region plu ⁇ 11 and 77 nucleotide ⁇ of 5' and 3' untranslated DNA, respectively.
  • This fragment designated F2, i ⁇ i ⁇ olated from a 1% agaro ⁇ e gel u ⁇ ing a commercially available kit ("Geneclean” , BIO 101 Inc., La Jolla, Ca.).
  • This expres ⁇ ion vector contains the strong polyhedrin promoter of the Autographa californica nuclear polyhidro ⁇ is virus (AcMNPV) followed by the recognition site ⁇ for the re ⁇ triction endonuclease ⁇ Smal and Xbal.
  • the polyadenylation site of the simian virus (SV)40 is used for efficient polyadenylation.
  • the beta-galacto ⁇ ida ⁇ e gene from E.coli is inserted in the same orientation a ⁇ the polyhedrin promoter followed by the polyadenylation signal of the polyhedrin gene.
  • the polyhedrin sequences are flanked at both sides by viral sequences for the cell-mediated homologous recombination of cotransfected wild-type viral DNA.
  • Many other baculovirus vectors could be used in place of pA2 such as, pRGl, pAc373, pVL941 and pAcIMl (Luckow, V.A. and Summers, M.D., Virology, 170:31-39) .
  • the plasmid is digested with the restriction enzymes S al and Xbal and then dephosphorylated using calf inte ⁇ tinal phosphata ⁇ e by procedure ⁇ known in the art.
  • the DNA is then isolated from a 1% agarose gel using the commercially available kit ("Geneclean" BIO 101 Inc., La Jolla, Ca.). This vector DNA i ⁇ designated V2.
  • Fragment F2 and the dephosphorylated plasmid V2 are ligated with T4 DNA ligase.
  • E.coli strain XL1 Blue (Stratagene Cloning Systems, 11011 North Torrey Pines Road La Jolla, Ca. 92037) are then transformed and bacteria identified that contained the plasmid (pBac VIGF) with the VIGF cDNA using the enzymes BamHI and Xbal. The sequence of the cloned fragment is confirmed by DNA sequencing.
  • the plate is rocked back and forth to mix the newly added solution.
  • the plate is then incubated for 5 hours at 27°C.
  • the transfection solution is removed from the plate and 1 ml of Grace's insect medium supplemented with 10% fetal calf serum is added.
  • the plate is put back into an incubator and cultivation continued at 27°C for four days.
  • plaque assay After four days the supernatant is collected and a plaque assay performed similar as described by Summers and Smith (supra) . As a modification an agarose gel with "Blue Gal” (Life Technologies Inc., Gaithersburg) is used which allows an easy isolation of blue stained plaques. (A detailed description of a "plaque assay” can also be found in the user's guide for insect cell culture and baculovirology distributed by Life Technologies Inc., Gaithersburg, page 9- 10) .
  • the viruses are added to the cells and blue stained plaques are picked with the tip of an Eppendorf pipette.
  • the agar containing the recombinant viruses is then resuspended in an Bppendorf tube containing 200 ⁇ l of Grace's medium.
  • the agar is removed by a brief centrifugation and the supernatant containing the recombinant baculoviruses is used to infect Sf9 cells seeded in 35 mm dishes.
  • the supematants of these culture dishes are harvested and then stored at 4°C.
  • Sf9 cells are grown in Grace's medium supplemented with 10% heat-inactivated FBS.
  • the cells are infected with the recombinant baculovirus V-VIGF at a multiplicity of infection (MOD of 2.
  • MOD multiplicity of infection
  • the medium i ⁇ removed and replaced with SF900 II medium minus methionine and cysteine (Life Technologies Inc. , Gaithersburg) .
  • the cells are further incubated for 16 hours before they are harvested by centrifugation and the labelled proteins visualized by SDS-PAGE and autoradiography.
  • Plasmid pN346 is used for the expression of the VIGF protein.
  • Plasmid pN346 is a derivative of the plasmid pSV2- dhfr [ATCC Accession No. 37146] . Both plasmids contain the mouse dhfr gene under control of the SV40 early promoter. Chinese hamster ovary or other cells lacking dihydrofolate activity that are transfected with these plasmids can be selected by growing the cells in a selective medium (alpha minus MEM, Lift Technologies) supplemented with the chemotherapeutic agent methotrexate.
  • a selective medium alpha minus MEM, Lift Technologies
  • DHFR target enzyme
  • a second gene is linked to the dhfr gene it is usually co-a ⁇ qplified and overexpressed.
  • cell line ⁇ contain the amplified gene integrated into the chromosome (s) .
  • Plasmid pN346 contains for the expression of the gene of interest a strong promoter of the long terminal repeat (LTR) of the Rouse Sarcoma Virus (Cullen, et al.. Molecular and Cellular Biology, March 1985, 438-447) plus a fragment i ⁇ olated from the enhancer of the immediate early gene of human cytomegalovirus (CMV) (Boshart et al., Cell 41:521-530, 1985) . Downstream of the promoter are the following single restriction enzyme cleavage sites that allow the integration of the genes : BamHI, Pvull, and Nrul .
  • LTR long terminal repeat
  • CMV cytomegalovirus
  • the plasmid contains translational stop codons in all three reading frames followed by the 3' intron and the polyadenylation site of the rat preproinsulin gene.
  • Other high efficient promoters can also be used for the expres ⁇ ion, e.g., the human ⁇ -actin promoter, the SV40 early or late promoters or the long terminal repeats from other retroviruses, e.g., HIV and HTLVI.
  • the polyadenylation of the mRNA other ⁇ ignal ⁇ e.g., from the human growth hormone or globin gene ⁇ can be used as well.
  • Stable cell lines carrying a gene of interest integrated into the chromosome can also be selected upon co-transfection with a ⁇ electable marker ⁇ uch a ⁇ gpt, G418 or hygromycin. It is advantageous to use more than one selectable marker in the beginning, e.g. G418 plu ⁇ methotrexate.
  • the 5' primer has the ⁇ equence 5' ⁇ C ⁇ GATCTCCX-iCC-ACCMOAA GAGCGTCT ⁇ GCTGCTG 3' and contain ⁇ a Bglll re ⁇ triction enzyme ⁇ ite (in bold) followed by 8 nucleotide ⁇ resembling an efficient ⁇ ignal for the initiation of tran ⁇ lation in eukaryotic cell ⁇ (Kozak, M., J. Mol. Biol., 196:947-950, (1987) ) .
  • the remaining nucleotide ⁇ correspond to the amino terminal 7 amino acids including the translational initiation codon (underlined) .
  • the 3' primer has the ⁇ equence 5' C--30lGATCrAGCC--TCrcr ⁇ - ⁇ G-A-AATCA ⁇ -- ⁇ 3' and contain ⁇ a Bglll re ⁇ triction ⁇ ite (in bold) and 21 nucleotide ⁇ that are the reverse complement of 3' untranslated DNA starting 7 nucleotides downstream from the translational stop codon.
  • the PCR product is digested with Bglll and purified on a 1% agarose gel using a commercially available kit ("Geneclean," BIO 101 Inc., La Jolla, Ca.) . This fragment is then ligated to BamHI dige ⁇ ted, phosphatased pN346 plasmid with T4 DNA liga ⁇ e.
  • E. coli are transformed and plated on LB, 50 ⁇ g/ml ampicillin plates. Colonies bearing the desired recombinant in the proper orientation are screened for by PCR with a 5' primer which corresponds to the Rous sarcoma virus promoter and a 3' primer which corresponds to the reverse complement of VIGF codons 73-79. The sequence of the cloned fragment i ⁇ confirmed by DNA ⁇ equencing. Transfection of CHO-dhfr-cells
  • Chinese hamster ovary cells lacking an active DHFR enzyme are used for transfection.
  • -5 ⁇ g of the expres ⁇ ion plasmid pN346VIGF are cotransfected with 0.5 ⁇ g of the plasmid pSVneo using the lipofectin method (Feigner et al. , supra) .
  • the plasmid pSV2-neo contains a dominant selectable marker, the gene neo from Tn5 encoding an enzyme that confer ⁇ re ⁇ istance to a group of antibiotics including G418.
  • the cells are seeded in alpha minus MEM supplemented with l mg/ml G418.
  • the cells are trypsinized and seeded in hybridoma cloning plates (Greiner, Germany) and cultivated from 10-14 days. After this period, single clones are trypsinized and then seeded in 6-well petri dishes using different concentrations of methotrexate (25, 50 nm, 100 nm, 200 nm, 400 nm) . Clones growing at the highest concentrations of methotrexate are then transferred to new 6- well plates containing even higher concentrations of methotrexate (500 nM, 1 ⁇ M, 2 ⁇ M, 5 ⁇ M) . The same procedure is repeated until clones grew at a concentration of 100 ⁇ M. The expression of the desired gene product is analyzed by Western blot analysis and SDS-PAGE.
  • a multiple tis ⁇ ue Northern blot (Clontech Laboratories, Inc., 4030 Fabian Way,* Palo Alto, California 94303) containing 2 ug of human adult brain, heart, placenta, lung, liver skeletal muscle, kidney, and pancreas poly A+ mRNA per lane is prehybridized in Church buffer (Church, G. M. & Gilbert, W., Proc. Natl. Acad. Sci. USA 81, 1991-1995 (1984)) at 60°C for one hour.
  • RNAzol Biotecx Laboratories, Inc., 6023 South Loop East Houston, Texas 77033
  • a 1.2% agarose formaldehyde gel i ⁇ prepared and run with 20 ug of total RNA per lane and an RNA ladder ⁇ ize marker (Life Technologies, Inc., 8400 Helgerman Ct., P.O. Box 6009 Gaither ⁇ burg, Maryland 20884) according to Sambrook et al. (1989) .
  • RNA i ⁇ tran ⁇ ferred overnight to Hybond N+ (Amersham Corp., 2636 South Clearbrook Drive,* Arlington Heights, Illinois 60005) and bound to the membrane with a Stratalinker UV Cros ⁇ linker (Stratagene Cloning Sy ⁇ tems, La Jolla, California) .
  • the blot is prehybridized in Church buffer (Church, G. M. & Gilbert, W., PNAS, USA 81:1991-1995 (1984)) at 60°C for one hour.
  • a 2.3-2.4 kb transcript is seen in umbilical vein endothelial (lane l) and aortic smooth muscle cells (lane 2) after a two hour exposure (Figure 5A) and also in dermal foreskin fibroblast (lane 3) cells after a 36 hour exposure ( Figure 5B) .
  • ADDRESSEE CARELLA, BYRNE, BAIN, GILFILLAN,
  • CACACAGCCA ACATTTTAGG AACTTTCTAG ATTATAGCAT AAGGACATGT AATTTTTGAA 720
  • GAGACAGGTC AACCAAAGAG GGAGCTAGGC AAAGCTGAAG ACCGCAGTGA GTCAAATTAG 960

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Abstract

A human Vascular IBP-like growth factor polypeptide (VIGF) and DNA (RNA) encoding such polypeptide and a procedure for producing such polypeptide by recombinant techniques is disclosed. Also disclosed are methods for utilizing such polypeptide for wound healing or tissue regeneration, stimulating implant fixation and angiogenesis. Antagonists against such polypeptides and their use as a therapeutic to treat atherosclerosis, tumors and scarring are also disclosed. Diagnostic assays for identifying mutations in VIGF nucleic acid sequences and altered levels of the VIGF polypeptide are also disclosed.

Description

HUMAN VASCULAR IBP-LIKE GROWTH FACTOR
This invention relates to newly identified polynucleotides, polypeptides encoded by such polynucleotides, the use of such polynucleotides and polypeptides, as well as the production of such polynucleotides and polypeptides. The invention also relates to inhibiting the action of such polypeptides.
The polypeptide of the present invention is related to a family of growth regulators comprising cef 10/cyr 61 , connective tissue growth factor (CTGF), and nov , as well as the insulin-like growth factor binding protein (IBP) family which modulates the activity of insulin-like growth factor (IGF). The mRNA corresponding to the polypeptide of this invention is highly expressed in vascular cell-types, thus, this polypeptide is hereinafter referred to as human vascular IBP-like growth factor or "VIGF".
Growth factors and other mitogenε, including transforming oncogenes, are capable of rapidly inducing a complex set of genes to be expressed by certain cells (Lau, L.F. and Nathans, D. , Molecular Aspects of Cellular Regulation, 6:165-202 (1991). These genes, which have been named immediate early or early response genes, are transcriptionally activated within minutes after contact with a growth factor or mitogen, independent of de novo protein synthesis. A group of these immediate early genes encodes secreted, extracellular proteins which are needed for coordination of complex biological processes such as differentiation and proliferation, regeneration and wound healing (Ryseck, R.P. et al, Cell Growth Differ., 2:235-233 (1991) .
Highly related proteins which belong to this group include cef 10 from chicken, which was detected after induction by the viral oncogene pp60v",rc (Simmons, D.L. et al, PNAS, U.S.A., 86:1178-1182 (1989). A closely related protein, cyr 61 , is rapidly activated by serum or platelet- derived growth factor (PDGF) (O'Brien, T.P. et al, Mol. Cell Biol.. 10:3569-3577 (1990). The overall amino acid identity between cef 10 and cyr 61 is as high as 83%. A third member is human connective tissue growth factor (CTGF) (Bradha , D.M. et al., J. Cell. Biol.. 114:1285-1294 (1991). CTGF is a cysteine-rich peptide which is secreted by human vascular endothelial cells in high levels after activation with transforming growth factor beta (TGF-β). CTGF exhibits PDGF- like biological and im unological activities and competes with PDGF for a particular cell surface receptor.
A fourth member of the immediate-early proteins is fisp-12 , which has been shown to be induced by serum and has been mapped to a region of the murine genome (Ryseck, R.P. et al., Cell Growth Differ., 2:235-233 (1991). Yet another member of this family is the chicken gene, nov , normally arrested in adult kidney cells, which was found to be overexpressed in yeloblastosis-associated virus type 1 induced nephroblasto as. Further, expression of an a ino- terminal-truncated nov product in chicken embryo fibroblasts was sufficient to induce transformation (Joliot, V. et al. , Mol. Cell. Biol., 12:10-21 (1992).
The expression of these immediate early genes act as "third messengers" in the cascade of events triggered by growth factors. It is also thought that they are needed to integrate and coordinate complex biological processes, such as differentiation and wound healing in which cell proliferation is a common event.
This emerging family of growth regulators is called the CCN family for C.TGF; cef 10 /cyr 61 ; and nov . The VIGF polypeptide of the present invention is thought to be a member of this family of growth regulators. The VIGF polypeptide also contains a stretch of cysteines which is highly homologous to insulin-like growth factor (IGF)-binding protein.
At least two different binding proteins have been identified in adult human serum, namely, IGF-binding protein 53 and IGF-binding protein 1. The IGF-binding proteins have both stimulatory and inhibitory effects on IGF. Clemmons, et al, J. Clin. Invest., 77:1548 (1986) showed increased binding to fibroblaεt and smooth muscle cell surface receptors of IGF in complex with its binding protein. The inhibitory effects of IGF-binding protein on various IGF actions in vitro, have been shown and they include stimulation of glucose transport by adipocytes, sulfate incorporation by chondrocytes and thy idine incorporation in fibroblast (Zapf, et al., J. Clin. Invest., 63:1077 (1979)). In addition, inhibitory effects of IGF-binding proteins on growth factor mediated mitogen activity in normal cells has been shown.
In accordance with one aspect of the present invention, there is provided a novel mature polypeptide which is VIGF, as well as biologically active and diagnostically or therapeutically useful fragments, analogs and derivatives thereof.
In accordance with another aspect of the present invention, there are provided isolated nucleic acid molecules encoding human VIGF, including RNAs, DNAs, cDNAs, genomic DNAs as well as analogs and biologically active and diagnostically or therapeutically useful fragments and derivatives thereof. In accordance with yet a further aspect of the present invention, there is provided a process for producing such polypeptide by recombinant techniques comprising culturing recombinant prokaryotic and/or eukaryotic host cells, containing a human VIGF nucleic acid sequence, under conditions promoting expression of said protein and subsequent recovery of said protein.
In accordance with yet a further aspect of the present invention, there is provided a process of utilizing such polypeptide, or polynucleotide encoding such polypeptide for therapeutic purposes, for example, to treat muscle wasting diseases, osteoporosis, to aid in implant fixation, to stimulate wound healing or tissue regeneration, to promote angiogenesis and to proliferate vascular smooth muscle and endothelial cell production.
In accordance with yet a further aspect of the present invention, there are provided antibodies against such polypeptides.
In accordance with yet another aspect of the present invention, there are provided antagonists to such polypeptides, which may be used to inhibit the action of such polypeptides, for example, to limit the production of excess connective tissue during wound healing or pulmonary fibrosiε.
In accordance with yet a further aspect of the present invention, there are also provided nucleic acid probes comprising nucleic acid molecules of sufficient length to specifically hybridize to VIGF sequences.
In accordance with still another aspect of the present invention, there are provided diagnostic assays for detecting diseases related to the under-expression and over-expression of the VIGF polypeptide and mutations in the nucleic acid sequences encoding such polypeptide.
These and other aspects of the present invention should be apparent to those skilled in the art from the teachings herein. The following drawings are illustrative of embodiments of the invention and are not meant to limit the scope of the invention as encompassed by the claims.
Figure 1 shows the cDNA and corresponding deduced amino acid sequence of the VIGF polypeptide. The initial 21 amino acids represent the putative leader sequence such that the mature polypeptide comprises 163 amino acids. The standard one letter abbreviations for amino acids are used. Sequencing was performed using a 373 Automated DNA sequencer (Applied Biosystems, Inc.). Seqeuncing accuracy is predicted to be greater than 97% accurate.
Figure 2 shows the amino acid sequence homology between VIGF and other proteins which are members of the CCN family.
Figure 3 shows an SDS-polyacrylamide gel which displays the results of VIGF bacterial purification and electrophoresis.
Figure 4 shows a gel which displays the results of a Northern Blot analysis performed on VIGF.
Figure 5 shows a gel which displays the results of a cell-type analysis of VIGF gene expression in the various tissues displayed. Lane 1 is umbilical" vein endothelial cells, Lane 2 is aortic smooth muscle cells and Lane 3 is dermal foreskin fibroblast cells. Figure 5A shows the results after a two hour exposure and Figure 5B shows the results after a thirty-six hour exposure.
In accordance with an aspect of the present invention, there is provided an isolated nucleic acid (polynucleotide) which encodes for the mature polypeptide having the deduced amino acid sequence of Figure 1 or for the mature polypeptide encoded by the cDNA of the clone deposited as ATCC Deposit No. 75874 on August 25, 1994.
A polynucleotide encoding a polypeptide of the present invention may be obtained from human umbilical vein and aortic endothelial cells, aortic smooth muscle cells, and pulmonary artery. The polynucleotide of this invention was discovered in a cDNA library derived from human umbilical vein endothelial cells. It is structurally related to the IBP and CCN families. It contains an open reading frame encoding a protein of 184 amino acid residues of which approximately the first 21 amino acids residues are the putative leader sequence such that the mature protein comprises 163 amino acids.
The designation of VIGF as a hybrid member of both the CCN growth factor and IBP families was based primarily through conservation of amino acid sequences. Similarity of VIGF to the CCN family is inferred because of the 40-45% similarity over the entire polypeptide, 12 of a total of 18 VIGF cysteines are conserved, and 94% identity with the IBP signature (GCGCCXXCAXXXXXXC) which is perfectly conserved in every member of the CCN family.
The VIGF polypeptide also has significant similarity to the IBP family. In two adjacent regions, amino acids 30-44 (IBP signature) and 55-69, there is at least 80% identity to the IBP family. These regions are contained within the putative IGF binding domain of the IBPε. The human tissue and cell-type specific expression has been determined by Northern blot analysis. The 2.3-2.4 kb VIGF mRNA is localized in the adult lung and kidney aε εhown uεing the procedure of Example 4. VIGF gene expression was undetectable in heart, brain, placenta, liver, skeletal uεcle, and pancreaε. Cultured human umbilical vein endothelial and aortic εmooth muεcle cellε are cell-typeε which express VIGF mRNA at a high level while dermal foreskin fibroblasts show a very low level. Together, these results indicate that VIGF is primarily of vascular origin.
The polynucleotide of the present invention may be in the form of RNA or in the form of DNA, which DNA includes cDNA, genomic DNA, and synthetic DNA. The DNA may be double- stranded or single-stranded, and if single stranded may be the coding strand or non-coding (anti-senεe) εtrand. The coding sequence which encodes the mature polypeptide may be identical to the coding sequence shown in Figure 1 or that of the deposited clone or may be a different coding sequence which coding sequence, as a result of the redundancy or degeneracy of the genetic code, encodes the same mature polypeptide as the DNA of Figure 1 or the deposited cDNA.
The polynucleotide which encodes for the mature polypeptide of Figure 1 or for the mature polypeptide encoded by the deposited cDNA may include: only the coding sequence for the mature polypeptide; the coding sequence for the mature polypeptide and additional coding sequence such as a leader or secretory sequence or a proprotein sequence; the coding sequence for the mature polypeptide (and optionally additional coding sequence) and non-coding sequence, such as introns or non-coding sequence 5' and/or 3' of the coding sequence for the mature polypeptide.
Thus, the term "polynucleotide encoding a polypeptide" encompasses a polynucleotide which includes only coding sequence for the polypeptide as well as a polynucleotide which includes additional coding and/or non-coding sequence.
The present invention further relates to variants of the hereinabove described polynucleotides which encode for fragments, analogs and derivatives of the polypeptide having the deduced amino acid sequence of Figure 1 or the polypeptide encoded by the cDNA of the deposited clone. The variant of the polynucleotide may be a naturally occurring allelic variant of the polynucleotide or a non-naturally occurring variant of the polynucleotide.
Thus, the present invention includes polynucleotides encoding the same mature polypeptide as shown in Figure 1 or the same mature polypeptide encoded by the cDNA of the deposited clone as well as variants of such polynucleotides which variants encode for a fragment, derivative or analog of the polypeptide of Figure 1 or the polypeptide encoded by the cDNA of the deposited clone. Such nucleotide variants include deletion variantε, substitution variants and addition or insertion variantε.
As hereinabove indicated, the polynucleotide may have a coding sequence which is a naturally occurring allelic variant of the coding sequence shown in Figure 1 or of the coding sequence of the deposited clone. As known in the art, an allelic variant is an alternate form of a polynucleotide sequence which may have a substitution, deletion or addition of one or more nucleotides, which does not εubstantially alter the function of the encoded polypeptide.
The present invention also includes polynucleotides, wherein the coding sequence for the mature polypeptide may be fused in the same reading frame to a polynucleotide sequence which aids in expresεion and εecretion of a polypeptide from a hoεt cell, for example, a leader εequence which functions as a secretory sequence for controlling transport of a polypeptide from the cell. The polypeptide having a leader sequence is a preprotein and may have the leader sequence cleaved by the hoεt cell to form the mature form of the polypeptide. The polynucleotides may also encode for a proprotein which is the mature protein plus additional 5' amino acid residueε. A mature protein having a proεequence iε a proprotein and iε an inactive form of the protein. Once the proεequence iε cleaved an active mature protein re ainε.
Thuε, for example, the polynucleotide of the preεent invention may encode for a mature protein, or for a protein having a proεequence or for a protein having both a prosequence and a preεequence (leader sequence).
The polynucleotides of the present invention may also have the coding sequence fused in frame to a marker sequence which allows for purification of the polypeptide of the present invention. The marker sequence may be a hexa- histidine tag supplied by a pQE-9 vector to provide for purification of the mature polypeptide fused to the marker in the case of a bacterial host, or, for example, the marker sequence may be a hemagglutinin (HA) tag when a mammalian host, e.g. COS-7 cells, iε used. The HA tag corresponds to an epitope derived from the influenza hemagglutinin protein (Wilson, I., et al.. Cell, 37:767 (1984)).
The present invention further relates to polynucleotides which hybridize to the hereinabove-described sequences if there is at least 50% and preferably 70% identity between the sequences. The present invention particularly relates to polynucleotides which hybridize under stringent conditions to the hereinabove-described polynucleotides . As herein used, the term "stringent conditions" means hybridization will occur only if there iε at least 95% and preferably at least 97% identity between the sequences. The polynucleotides which hybridize to the hereinabove described polynucleotides in a preferred embodiment encode polypeptides which retain εubεtantially the same biological function or activity as the mature polypeptide encoded by the cDNA of Figure 1 or the deposited cDNA.
The deposit(s) referred to herein will be maintained under the terms of the Budapest Treaty on"the International Recognition of the Deposit of Micro-organisms for purposes of Patent Procedure. These deposits are provided merely as convenience to those of skill in the art and are not an admisεion that a depoεit iε required under 35 U.S.C. §112. The sequence of the polynucleotides contained in the deposited materials, aε well aε the amino acid εequence of the polypeptides encoded thereby, are incorporated herein by reference and are controlling in the event of any conflict with any description of sequences herein. A license may be required to make, use or sell the deposited materials, and no such license is hereby granted.
The present invention further relates to a VIGF polypeptide which has the deduced amino acid sequence of Figure 1 or which has the amino acid sequence encoded by the deposited cDNA, aε well as fragments, analogs and derivativeε of such polypeptide.
The terms "fragment," "derivative" and "analog" when referring to the polypeptide of Figure 1 or that encoded by the depoεited cDNA, meanε a polypeptide which retainε essentially the same biological function or activity aε such polypeptide. Thus, an analog includes a proprotein which can be activated by cleavage of the proprotein portion to produce an active mature polypeptide.
The polypeptide of the present invention may be a recombinant polypeptide, a natural polypeptide or a synthetic polypeptide, preferably a recombinant polypeptide.
The fragment, derivative or analog of the polypeptide of Figure 1 or that encoded by the depoεited cDNA may be (i) one in which one or more of the amino acid residues are substituted with a conserved or non-conserved amino acid residue (preferably a conserved amino acid residue) and such substituted amino acid residue may or may not be one encoded by the genetic code, or (ii) one in which one or more of the amino acid residues includes a εubεtituent group, or (iii) one in which the mature polypeptide is fused with another compound, such aε a compound to increaεe the half-life of the polypeptide (for example, polyethylene glycol), or (iv) one in which the additional amino acids are fuεed to the mature polypeptide, such as a leader or secretory sequence or a sequence which is employed for purification of the mature polypeptide or a proprotein sequence. Such fragments, derivativeε and analogε are deemed to be within the εcope of thoεe skilled in the art from the teachings herein.
The polypeptides and polynucleotides of the present invention are preferably provided in an isolated form, and preferably are purified to homogeneity.
The term "isolated" means that the material is removed from its original environment (e.g., the natural environment if it is naturally occurring) . For example, a naturally- occurring polynucleotide or polypeptide present in a living animal iε not isolated, but the same polynucleotide or polypeptide, separated from some or all of the coexisting materials in the natural system, is isolated. Such polynucleotides could be part of a vector and/or such polynucleotides or polypeptides could be part of a composition, and still be isolated in that such vector or composition is not part of itε natural environment.
The present invention also relates to vectors which include polynucleotides of the present invention, host cellε which are genetically engineered with vectors of the invention and the production of polypeptides of the invention by recombinant techniques.
Host cells are genetically engineered (transduced or transformed or transfected) with the vectors of this invention which may be, for example, a cloning vector or an expression vector. The vector may be, for example, in the form of a plasmid, a viral particle, a phage, etc. The engineered host cells can be cultured in conventional nutrient media modified as appropriate for activating promoters, selecting transformantε or amplifying the VIGF genes. The culture conditions, such aε temperature, pH and the like, are those previously used with the host cell selected for expression, and will be apparent to the ordinarily skilled artisan.
The polynucleotides of the present invention may be employed for producing polypeptides by recombinant techniqueε. Thuε, for example, the polynucleotide may be included in any one of a variety of expression vectors for expressing a polypeptide. Such vectors include chromosomal, nonchro osomal and synthetic DNA sequenceε, e.g., derivativeε of SV40; bacterial plasmids; phage DNA; baculovirus; yeast plasmidε; vectorε derived from cσmbinationε of plasmidε and phage DNA, viral DNA such as vaccinia, adenovirus, fowl pox virus, and pseudorabieε. However, any other vector may be used aε long aε it is replicable and viable in the host.
The appropriate DNA sequence may be inserted into the vector by a variety of procedures. In general, the DNA sequence iε inserted into an appropriate restriction endonuclease site(s) by procedures known in the art. Such procedureε and others are deemed to be within the scope of those skilled in the art.
The DNA sequence in the expression vector is operatively linked to an appropriate expression control sequence(s) (promoter) to direct mRNA synthesiε. Aε repreεentative exampleε of such promoters, there may be mentioned: LTR or SV40 promoter, the E. coli. lac or trp, the phage lambda PL promoter and other promoters known to control expression of genes in prokaryotic or eukaryotic cells or their viruses. The expreεsion vector also contains a riboεome binding site for translation initiation and a transcription terminator. The vector may also include appropriate sequences for amplifying expreεsion.
In addition, the expresεion vectors preferably contain one or more εelectable marker genes to provide a phenotypic trait for εelection of transformed host cells such as dihydrofolate reductase or neomycin resistance for eukaryotic cell culture, or such as tetracycline or ampicillin resistance in E. coli.
The vector containing the appropriate DNA sequence as hereinabove described, aε well aε an appropriate promoter or control εequence, may be employed to transform an appropriate host to permit the hoεt to express the protein.
Aε repreεentative exampleε of appropriate hoεtε, there may be mentioned: bacterial cells, εuch as E. coli, Streptomyces, Salmonella typhimuriu-n; fungal cells, εuch aε yeaεt; inεect cellε εuch aε Droεophila S2 and Sf9; animal cells such as CHO, COS or Boweε melanoma; adenoviruεeε; plant cellε, etc. The εelection of an appropriate hoεt is deemed to be within the scope of those skilled in the art from the teachings herein.
More particularly, the present invention also includes recombinant constructs comprising one or more of the sequences aε broadly deεcribed above. The conεtructε comprise a vector, such aε a plasmid or viral vector, into which a sequence of the invention has been inserted, in a forward or reverse orientation. In a preferred aspect of this embodiment, the construct further comprises regulatory sequenceε, including, for example, a promoter, operably linked to the sequence. Large numbers of suitable vectors and promoters are known to those of skill in the art, and are commercially available. The following vectors are provided by way of example. Bacterial: pQE70, pQE60, pQE-9 (Qiagen), pBS, pDIO, phagescript, pεiX174, pbluescript SK, pBSKS, pNH8A, pNH16a, pNH18A, pNH46A (Stratagene); pTRC99a, pKK223- 3, pKK233-3, pDR540, pRIT5 (Pharmacia). Eukaryotic: pWLNEO, pSV2CAT, pOG44, pXTl, pSG (Stratagene) pSVK3, pBPV, pMSG, pSVL (Pharmacia). However, any other plasmid or vector may be used aε long aε they are replicable and viable in the hoεt.
Promoter regionε can be εelected from any desired gene using CAT (chloramphenicol transferase) vectors or other vectors with selectable markers. Two appropriate vectors are PKK232-8 and PCM7. Particular named bacterial promoters include lad, lacZ, T3, T7, gpt, lambda P„, P, and trp. Eukaryotic promoters include CMV immediate early, HSV thymidine kinase, early and late SV40, LTRs from retrovirus, and mouse metallothionein-I. Selection of the appropriate vector and promoter is well within the level of ordinary skill in the art.
In a further embodiment, the present invention relateε to hoεt cells containing the above-described constructs. The host cell can be a higher eukaryotic cell, such as a mammalian cell, or a lower eukaryotic cell, such aε a yeast cell, or the hoεt cell can be a prokaryotic cell, such as a bacterial cell. Introduction of the construct into the host cell can be effected by calcium phosphate transfection, DEAE- Dextran mediated tranεfection, or electroporation (Daviε, L. , Dibner, M., Battey, I., Baεic Methods in Molecular Biology, (1986)) .
The constructs in host cells can be used in a conventional manner to produce the gene product encoded by the recombinant sequence. Alternatively, the polypeptides of the invention can be synthetically produced by conventional peptide synthesizers.
Mature proteins can be expressed in mammalian cells, yeaεt, bacteria, or other cellε under the control of appropriate promoters. Cell-free translation systems can also be employed to produce such proteins uεing RNAε derived from the DNA conεtructs of the present invention. Appropriate cloning and expresεion vectors for use with prokaryotic and eukaryotic hosts are described by Sambrook, et al.. Molecular Cloning: A Laboratory Manual, Second Edition, Cold Spring Harbor, N.Y., (1989), the discloεure of which iε hereby incorporated by reference.
Transcription of the DNA encoding the polypeptides of the present invention by higher eukaryotes is increased by inserting an enhancer sequence into the vector. Enhancers are ciε-acting elementε of DNA, uεually about from 10 to 300 bp that act on a promoter to increaεe its transcription. Exampleε including the SV40 enhancer on the late side of the replication origin bp 100 to 270, a cytomegalovirus early promoter enhancer, the polyoma enhancer on the late side of the replication origin, and adenoviruε enhancerε.
Generally, recombinant expression vectors will include origins of replication and selectable markers permitting transformation of the hoεt cell, e.g., the ampicillin resistance gene of E. coli and S. cerevisiae TRP1 gene, and a promoter derived from a highly-expressed gene to direct transcription of a downstream structural sequence. Such promoters can be derived from operons encoding glycolytic enzymes such as 3-phosphoglycerate kinase (PGK), α-factor, acid phosphatase, or heat shock proteins, among otherε. The heterologouε structural sequence is assembled in appropriate phase with translation initiation and termination sequences, and preferably, a leader sequence capable of directing secretion of translated protein into the periplasmic space or extracellular medium. Optionally, the heterologous εequence can encode a fuεion protein including an N-terminal identification peptide imparting desired characteristics, e.g., stabilization or simplified purification of expressed recombinant product.
Useful expression vectors for bacterial use are constructed by inserting a structural DNA sequence encoding a desired protein together with suitable translation initiation and termination signals in operable reading phase with a functional promoter. The vector will comprise one or more phenotypic selectable markers and an origin of replication to ensure maintenance of the vector and to, if desirable, provide amplification within the host. Suitable prokaryotic hosts for transformation include E. coli. Bacillus εubtiliε. Salmonella typhi urium and various specieε within the genera Pεeudomonaε, Streptomyceε, and Staphylococcuε, although otherε may alεo be employed aε a matter of choice.
As a representative but nonlimiting example, uεeful expreεεion vectorε for bacterial uεe can compriεe a εelectable marker and bacterial origin of replication derived from commercially available plaεmidε comprising genetic elements of the well known cloning vector pBR322 (ATCC 37017). Such commercial vectors include, for example, pKK223-3 (Pharmacia Fine Chemicals, Uppsala, Sweden) and GEM1 (Promega Biotec, Madison, Wl, USA). These pBR322 "backbone" sections are combined with an appropriate promoter and the structural sequence to be expressed.
Following transformation of a suitable host strain and growth of the hoεt strain to an appropriate cell density, the selected promoter is induced by appropriate means (e.g., temperature εhift or chemical induction) and cellε are cultured for an additional period.
Cellε are typically harveεted by centrifugation, diεrupted by phyεical or chemical means, and the resulting crude extract retained for further purification.
Microbial cells employed in expresεion of proteinε can be diεrupted by any convenient method, including freeze-thaw cycling, sonication, mechanical disruption, or use of cell lysing agentε, such methods are well know to those skilled in the art.
Various mammalian cell culture systems can also be employed to express recombinant protein. Examples of mammalian expression syεtems include the COS-7 lineε of monkey kidney fibroblaεts, described by Gluzman, Cell, 23:175 (1981), and other cell lines capable of expreεεing a compatible vector, for example, the C127, 3T3, CHO, HeLa and BHK cell lineε. Mammalian expreεsion vectors will comprise an origin of replication, a suitable promoter and enhancer, and also any neceεεary riboεome binding εiteε, polyadenylation εite, εplice donor and acceptor εiteε, transcriptional termination sequenceε, and 5' flanking nontranscribed sequences. DNA sequenceε derived from the SV40 splice, and polyadenylation sites may be used to provide the required nontranscribed genetic elements.
The VIGF polypeptides can be recovered and purified from recombinant cell cultures by methods including ammonium sulfate or ethanol precipitation, acid extraction, anion or cation exchange chromatography, phosphocelluloεe chromatography, hydrophobic interaction chromatography, affinity chromatography, hydroxylapatite chromatography and lectin chromatography. Protein refolding steps can be used, as necessary, in completing configuration of the mature protein. Finally, high performance liquid chromatography (HPLC) can be employed for final purification steps.
The polypeptides of the present invention may be a naturally purified product, or a product of chemical synthetic procedures, or produced by recombinant techniqueε from a prokaryotic or eukaryotic host (for example, by bacterial, yeast, higher plant, insect and mammalian cells in culture) . Depending upon the host employed in a recombinant production procedure, the polypeptides of the present invention may be glycosylated or may be non-glycosylated. Polypeptides of the invention may also include an initial methionine amino acid residue.
This VIGF polypeptide of the present invention may be employed in wound-healing and associated therapies concerned with re-growth of tissue, such as connective tissue, skin, bone, cartilage, muscle, lung or kidney.
VIGF polypeptide may also be employed to enhance the growth of vascular smooth muscle and endothelial cellε leading to the εtimulation of angiogenesis. The VIGF- mediated increase in angiogenesis would be beneficial to ischemic tissues and to collateral coronary development in the heart subsequent to coronary stenosis.
VIGF polypeptide may also be employed during implant fixation to stimulate the growth of cellε around the implant and therefore, facilitate itε attachment to itε intended site.
VIGF polypeptide may also be employed to increase IGF stability in tiεεueε or in serum. It may also increase binding to the IGF receptor. Since IGF has been shown in vitro to enhance human marrow erythroid and granulocytic progenitor cell growth, VIGF polypeptide may also be employed to stimulate erythropoiesis or granulopoiesis. In accordance with yet a further aspect of the present invention, there is provided a process for utilizing such polypeptides, or polynucleotides encoding such polypeptides, as a research reagent for in vitro purposes related to scientific research, synthesiε of DNA and manufacture of DNA vectors, for the purpose of developing therapeutics and diagnostics for the treatment of human diseaεe.
Fragments of the full length VIGF gene may be used as a hybridization probe for a cDNA library to isolate the full length VIGF gene and to isolate other genes which have a high sequence similarity to the VIGF gene or similar biological activity. Probeε of thiε type can be, for example, between 20 and 2000 baεe pairε. Preferably, however, the probeε have between 30 and 50 bases. The probe may also be used to identify a cDNA clone corresponding to a full length transcript and a genomic clone or cloneε that contain the complete VIGF gene including regulatory and promotor regions, exons, and introns. An example of a εcreen comprises isolating the coding region of the VIGF gene by using the known DNA sequence to syntheεize an oligonucleotide probe. Labeled oligonucleotideε having a εequence complementary to that of the gene of the preεent invention are used to screen a library of human cDNA, genomic DNA or mRNA to determine which members of the library the probe hybridizeε to.
This invention provides a method for identification of the receptor for VIGF. The gene encoding the receptor can be identified by numerous methods known to those of εkill in the art, for example, ligand panning and FACS εorting (Coligan, et al., Current Protocols in I mun., 1(2), Chapter 5, (1991)). Preferably, expreεsion cloning is employed wherein polyadenylated RNA is prepared from a cell responsive to VIGF, and a cDNA library created from thiε RNA iε divided into poolε and uεed to transfect COS cellε or other cellε that are not reεponεive to VIGF. Transfected cells which are grown on glass slides are exposed to labeled VIGF. VIGF can be labeled by a variety of means including iodination or inclusion of a recognition site for a site-specific protein kinase. Following fixation and incubation, the slides are subjected to autoradiographic analysis. Positive pools are identified and εub-poolε are prepared and retranεfected uεing an iterative εub-pooling and rescreening process, eventually yielding a single clone that encodes the putative receptor.
As an alternative approach for receptor identification, labeled VIGF can be photoaffinity linked with cell membrane or extract preparations that expresε the receptor molecule. Cross-linked material is resolved by PAGE and exposed to X- ray film. The labeled complex containing the VIGF-receptor can be excised, resolved into peptide fragments, and subjected to protein microsequencing. The amino acid sequence obtained from microsequencing would be used to design a set of degenerate oligonucleotide probes to screen a cDNA library to identify the gene encoding the putative receptor.
This invention is also related to a method of screening compounds to identify those which mimic VIGF (agonistε) or prevent the effect of VIGF. An example of such a method takes advantage of the ability of VIGF to stimulate the proliferation of endothelial cells in the presence of the comitogen Con A. Human umbilical vein endothelial cells are obtained and cultured in 96-well flat-bottomed culture plates (Costar, Cambridge, MA) and supplemented with a reaction mixture appropriate for facilitating proliferation of the cellε, the mixture containing Con-A (Calbioche , La Jolla, CA) . Con-A and the compound to be εcreened are added and after incubation at 37°C, cultures are pulsed with 3[H]thymidine and harvested onto glass fiber filters (PhD; Cambridge Technology, Watertown, MA). Mean 3[H]-thymidine incorporation (cpm) of triplicate cultures is determined using a liquid scintillation counter (Beckman Instrumentε, Irvine, CA) . Significant 3[H]-thymidine incorporation indicates stimulation of endothelial cell proliferation.
To assay for antagonists, the assay described above is performed, however, in this assay VIGF is added along with the compound to be screened and the ability of the compound to inhibit 3[H]-thyraidine incorporation in the presence of VIGF, indicates that the compund iε an antagonist to VIGF. Alternatively, VIGF antagoniεtε may be detected by combining VIGF and a potential antagoniεt with membrane-bound VIGF receptorε or recombinant receptorε under appropriate conditionε for a competitive inhibition aεsay. VIGF can be labeled, such as by radioactivity, εuch that the number of VIGF molecules bound to the receptor can determine the effectivenesε of the potential antagonist.
Also, a mammalian cell or membrane preparation expresεing the VIGF receptor would be incubated with labeled VIGF in the preεence of the compound. The ability of the compound to enhance or block thiε interaction could then be meaεured. ALternatively, VIGF, labelled IGF and a potential compound could be incubated under conditionε where VIGF would naturally bind to IGF. The extent of thiε interaction could be meaεured to determine if the compound iε an effective antagoniεt or agonist.
Examples of potential VIGF antagonists include an antibody, or in some cases, an oligonucleotide, which binds to the polypeptide. Alternatively, a potential antagonist may be a closely related protein, for example, a mutated form of VIGF, which recognizes the VIGF receptor but imparts no effect, thereby competitively inhibiting the action of VIGF.
Another potential VIGF antagonist is an antisense construct prepared using antisense technology. Antisense technology can be used to control gene expression through triple-helix formation or antisenεe DNA or RNA, both of which methodε are baεed on binding of a polynucleotide to DNA or RNA. For example, the 5' coding portion of the polynucleotide sequence, which encodes for the mature polypeptides of the present invention, is used to design an antisense RNA oligonucleotide of from about 10 to 40 base pairs in length. A DNA oligonucleotide iε deεigned to be complementary to a region of the gene involved in transcription (triple helix -see Lee et al. , Nucl. Acids Res., 6:3073 (1979); Cooney et al. Science, 241:456 (1988); and Dervan et al., Science, 251: 1360 (1991)), thereby preventing transcription and the production of VIGF. The antisense RNA oligonucleotide hybridizes to the mRNA in vivo and blocks translation of the mRNA molecule into the VIGF (antisense - Okano, J. Neurochem., 56:560 (1991); Oligodeoxynucleotideε as Antisense Inhibitors of Gene Expression, CRC Press, Boca Raton, FL (1988)). The oligonucleotides described above can also be delivered to cells such that the antisense RNA or DNA may be expressed in vivo to inhibit production of VIGF.
Potential VIGF antagonistε include small molecules which bind to the active site, the receptor binding site, IGF or other growth factor binding site of the polypeptide thereby blocking the normal biological activity of VIGF. Examples of small molecules include but are not limited to small peptides or peptide-like molecules.
The antagonists may be employed to inhibit tumor neovascularization and the neointimal proliferation of smooth muscle cells prevalent in atherosclerosis and restenoεiε εubsequent to balloon angioplaεty.
The antagoniεts may also be employed to inhibit the over production of scar tissue seen in a keloid which forms after surgery, fibrosis after myocardial infarction, or fibrotic leεionε associated with pulmonary fibrosis. The antagonists may be employed in a composition with a pharmaceutically acceptable carrier, e.g., as hereinafter deεcribed.
The VIGF polypeptideε and antagoniεt or agoniεtε of the present invention may be employed in combination with a suitable pharmaceutical carrier. Such compositions comprise a therapeutically effective amount of the polypeptide, and a pharmaceutically acceptable carrier or excipient. Such a carrier includes but iε not limited to saline, buffered saline, dextrose, water, glycerol, ethanol, and combinations thereof. The formulation should suit the mode of administration.
The invention also provides a pharmaceutical pack or kit comprising one or more containers filled with one or more of the ingredients of the pharmaceutical compositionε of the invention. Associated with such container(ε) can be a notice in the form prescribed by a governmental agency regulating the manufacture, use or sale of pharmaceuticals or biological products, which notice reflects approval by the agency of manufacture, use or sale for human administration. In addition, the pharmaceutical compositions may be employed in conjunction with other therapeutic compoundε.
The pharmaceutical compoεitions may be administered in a convenient manner such aε by the oral, topical, intravenous, intraperitoneal, intramuscular, subcutaneous, intranaεal or intradermal routeε. The pharmaceutical compoεitions are administered in an amount which is effective for treating and/or prophylaxis of the specific indication. In general, they are adminiεtered in an amount of at leaεt about 10 μg/kg body weight and in most cases they will be adminiεtered in an amount not in excess of about 8 mg/Kg body weight per day. In moεt cases, the dosage is from about 10 μg/kg to about 1 mg/kg body weight daily, taking into account the routes of administration, symptoms, etc.
VIGF in combination with other growth factors including but not limited to, PDGF, IGF, FGF, EGF or TGF-3 may accelerate physiological responses as seen in wound healing.
The VIGF polypeptide and agonists and antagonists which are polypeptides, may also be employed in accordance with the present invention by expression of such polypeptides in vivo , which is often referred to as "gene therapy."
Thus, for example, cells from a patient may be engineered with a polynucleotide (DNA or RNA) encoding a polypeptide ex vivo, with the engineered cells then being provided to a patient to be treated with the polypeptide. Such methods are well-known in the art. For example, cellε may be engineered by procedures known in the art by use of a retroviral particle containing RNA encoding a polypeptide of the present invention.
Similarly, cells may be engineered in vivo for expression of a polypeptide in vivo by, for example, procedures known in the art. As known in the art, a producer cell for producing a retroviral particle containing RNA encoding the polypeptide of the present invention may be administered to a patient for engineering cells in vivo and expression of the polypeptide in vivo. These and other methods for administering a polypeptide of the present invention by such method should be apparent to thoεe εkilled in the art from the teachingε of the present invention. For example, the expression vehicle for engineering cells may be other than a retrovirus, for example, an adenoviruε which may be used to engineer cells in vivo after combination with a suitable delivery vehicle.
Thiε invention iε alεo related to the use of the VIGF gene aε a diagnoεtic. Detection of a mutated form of VIGF will allow a diagnoεiε of a disease or a suεceptibility to a disease, such as a tumor, since mutations in VIGF may cause tumors.
Individuals carrying mutationε in the human VIGF gene may be detected at the DNA level by a variety of techniques. Nucleic acids for diagnosis may be obtained from a patient's cells, such as from blood, urine, saliva, tisεue biopsy and autopεy material. The genomic DNA may be used directly for detection or may be amplified enzymatically by using PCR (Saiki et ai., Nature, 324:163-166 (1986)) prior to analysis. RNA or cDNA may also be used for the same purpose. As an example, PCR primerε complementary to the nucleic acid encoding VIGF can be used to identify and analyze VIGF mutations. For example, deletionε and inεertions can be detected by a change in size of the amplified product in comparison to the normal genotype. Point mutationε can be identified by hybridizing amplified DNA to radiolabeled VIGF RNA or alternatively, radiolabeled VIGF antiεenεe DNA sequences. Perfectly matched sequences can be distinguished from mismatched duplexes by RNase A digestion or by differences in melting temperatureε.
Genetic teεting based on DNA sequence differences may be achieved by detection of alteration in electrophoretic mobility of DNA fragments in gels with or without denaturing agents. Small sequence deletions and insertions can be visualized by high resolution gel electrophoresis. DNA fragments of different sequences may be distinguished on denaturing formamidine gradient gelε in which the obilitieε of different DNA fragments are retarded in the gel at different poεitionε according to their εpecific melting or partial melting temperatureε (εee, e.g., Myerε et al . , Science, 230:1242 (1985)).
Sequence changes at specific locations may also be revealed by nuclease protection assays, εuch aε RNaεe and SI protection or the chemical cleavage method (e.g., Cotton et al . , PNAS, USA, 85:4397-4401 (1985)).
Thus, the detection of a specific DNA sequence may be achieved by methods such as hybridization, RNaεe protection, chemical cleavage, direct DNA εequencing or the use of restriction enzymes, (e.g., Restriction Fragment Length Polymorphisms (RFLP)) and Southern blotting of genomic DNA.
In addition to more conventional gel-electrophoresiε and DNA εequencing, mutationε can alεo be detected by in situ analysis. VIGF protein expreεsion may be linked to vascular disease or neovascularization associated with tumor formation. VIGF has a signal peptide and the mRNA is highly expressed in endothelial cells and to a lesser extent in smooth muscle cells which indicates that the protein is present in serum. Accordingly, an anti-VIGF antibody could be used to diagnose vascular diseaεe or neovaεcularization associated with tumor formation since an altered level of this polypeptide may be indicative of such disorders.
A competition assay may be employed wherein antibodies specific to VIGF is attached to a solid support and labeled VIGF and a sample derived from the host are passed over the solid support and the amount of label detected attached to the solid εupport can be correlated to a quantity of VIGF in the sample.
The sequenceε of the preεent invention are also valuable for chromosome identification. The εequence iε specifically targeted to and can hybridize with a particular location on an individual human chromosome. Moreover, there is a current need for identifying particular sites on the chromosome. Few chromosome marking reagents based on actual sequence data (repeat polymorphisms) are presently available for marking chromosomal location. The mapping of DNAs to chromosomes according to the present invention is an important first step in correlating thoεe εequenceε with geneε aεsociated with diseaεe.
Briefly, εequenceε can be mapped to chromosomes by preparing PCR primers (preferably 15-25 bp) from the cDNA. Computer analyεiε of the 3' untranεlated region iε uεed to rapidly select primers that do not span more than one exon in the genomic DNA, thus complicating the amplification process. These primerε are then uεed for PCR εcreening of εomatic cell hybridε containing individual human chromoεomeε. Only those hybrids containing the human gene corresponding to the primer will yield an amplified fragment. PCR mapping of somatic cell hybrids is a rapid procedure for assigning a particular DNA to a particular chromosome. Using the present invention with the same oligonucleotide primers, sublocalization can be achieved with panels of fragmentε from specific chromosomes or pools of large genomic clones in an analogous manner. Other mapping εtrategieε that can εimilarly be used to map to its chromosome include in situ hybridization, preεcreening with labeled flow-εorted chromosomes and preselection by hybridization to construct chromosome specific-cDNA libraries.
Fluorescence in situ hybridization (FISH) of a cDNA clone to a metaphase chromosomal spread can be used to provide a precise chromosomal location in one step. This technique can be used with cDNA aε εhort aε 500 or 600 baεes; however, clones larger than 2,000 bp have a higher likelihood of binding to a unique chromosomal location with sufficient signal intensity for simple detection. FISH requires use of the clones from which the EST was derived, and the longer the better. For example, 2,000 bp iε good, 4,000 iε better, and more than 4,000 iε probably not neceεsary to get good results a reasonable percentage of the time. For a review of this technique, see Verma et al., Human Chromosomes: a Manual of Basic Techniques, Pergamon Press, New York (1988).
Once a sequence has been mapped to a precise chromosomal location, the physical position of the sequence on the chromosome can be correlated with genetic map data. Such data are found, for example, in V. McKusick, Mendelian Inheritance in Man (available on line through Johns Hopkins University Welch Medical Library). The relationship between genes and diseases that have been mapped to the same chromosomal region are then identified through linkage analysis (coinheritance of physically adjacent geneε).
Next, it iε necessary to determine the differences in the cDNA or genomic sequence between affected and unaffected individuals. If a mutation is observed in some or all of the affected individuals but not in any normal individuals, then the mutation is likely to be the causative agent of the disease.
With current resolution of physical mapping and genetic mapping techniques, a cDNA precisely localized to a chromosomal region associated with the disease could be one of between 50 and 500 potential causative genes. (Thiε assumes 1 megabaεe mapping reεolution and one gene per 20 kb) .
The polypeptideε, their fragmentε or other derivativeε, or analogs thereof, or cells expressing them can be used as an immunogen to produce antibodieε thereto. These antibodieε can be, for example, polyclonal or monoclonal antibodieε. The preεent invention alεo includeε chimeric, single chain, and humanized antibodies, as well as Fab fragments, or the product of an Fab expresεion library. Variouε procedures known in the art may be used for the production of such antibodies and fragmentε.
Antibodies generated against the polypeptides corresponding to a sequence of the present invention can be obtained by direct injection of the polypeptides into an animal or by administering the polypeptides to an animal, preferably a nonhuman. The antibody so obtained will then bind the polypeptideε itself. In this manner, even a sequence encoding only a fragment of the polypeptides can be used to generate antibodies binding the whole native polypeptides. Such antibodies can then be uεed to isolate the polypeptide from tisεue expreεεing that polypeptide.
For preparation of monoclonal antibodies, any technique which provideε antibodies produced by continuous cell line cultures can be used. Examples include the hybridoma technique (Kohler and Milεtein, 1975, Nature, 256:495-497), the trioma technique, the human B-cell hybridoma technique (Kozbor et al., 1983, Immunology Today 4:72), and the EBV- hybridoma technique to produce human monoclonal antibodieε (Cole, et al., 1985, in Monoclonal Antibodieε and Cancer Therapy, Alan R. Liεε, Inc., pp. 77-96).
Techniqueε deεcribed for the production of εingle chain antibodieε (U.S. Patent 4,946,778) can be adapted to produce single chain antibodies to immunogenic polypeptide products of thiε invention. Alεo, transgenic mice may be used to express humanized antibodies to immunogenic polypeptide products of this invention.
The present invention will be further deεcribed with reference to the following examples; however, it is to be understood that the present invention is not limited to such exampleε. All partε or amounts, unleεs otherwiεe specified, are by weight.
In order to facilitate understanding of the following examples certain frequently occurring methods and/or terms will be deεcribed.
"Plasmids" are designated by a lower case p preceded and/or followed by capital letters and/or numbers. The starting plaεmids herein are either commercially available, publicly available on an unreεtricted basis, or can be constructed from available plaεmidε in accord with publiεhed procedureε. In addition, equivalent plasmids to those deεcribed are known in the art and will be apparent to the ordinarily εkilled artiεan.
"Digestion" of DNA refers to catalytic cleavage of the DNA with a restriction enzyme that acts only at certain sequences in the DNA. The various restriction enzymes used herein are commercially available and their reaction conditions, cofactors and other requirements were uεed aε would be known to the ordinarily εkilled artiεan. For analytical purpoεes, typically 1 μg of plasmid or DNA fragment is used with about 2 units of enzyme in about 20 μl of buffer solution. For the purpose of isolating DNA fragments for plasmid construction, typically 5 to 50 μg of DNA are digested with 20 to 250 units of enzyme in a larger volume. Appropriate buffers and substrate amounts for particular restriction enzymes are specified by the manufacturer. Incubation times of about 1 hour at 37*C are ordinarily used, but may vary in accordance with the supplier's instructions. After digestion the reaction is electrophoresed directly on a polyacrylamide gel to isolate the desired fragment.
Size separation of the cleaved fragments is performed uεing 8 percent polyacrylamide gel described by Goeddel, D. et al . , Nucleic Acids Res., 8:4057 (1980).
"Oligonucleotideε" referε to either a single stranded polydeoxynucleotide or two complementary polydeoxynucleotide strands which may be chemically synthesized. Such synthetic oligonucleotides have no 5' phosphate and thus will not ligate to another oligonucleotide without adding a phosphate with an ATP in the presence of a kinase. A synthetic oligonucleotide will ligate to a fragment that has not been dephosphorylated.
"Ligation" referε to the proceεε of forming phoεphodieεter bondε between two double εtranded nucleic acid fragments (Maniatiε, T., et al., Id., p. 146). Unless otherwise provided, ligation may be accomplished using known buffers and conditions with 10 units of T4 DNA ligase ("ligase") per 0.5 μg of approximately equimolar amounts of the DNA fragments to be ligated.
Unless otherwise stated, transformation waε performed aε described in the method of Graham, F. and Van der Eb, A., Virology, 52:456-457 (1973).
Example 1 Bacterial Expression and Purification of VIGF
The DNA sequence encoding VIGF, ATCC # 75874, was initially amplified using PCR oligonucleotide primers corresponding to the 5' sequenceε of the processed VIGF protein (minus the signal peptide sequence) and the vector sequences 3' to the VIGF gene. Additional nucleotides corresponding to VIGF were added to the 5' and 3' sequenceε respectively. The 5' oligonucleotide primer has the sequence 5' CGCAAGCTTAAATAATTATGCGGTGGACTGC 3' contains a Hind III restriction enzyme site (in bold) followed by 21 nucleotideε of VIGF coding sequence starting from the presumed terminal amino acid of the processed protein codon (underlined). The 3' oligonucleotide primer 5' CGCTCTAGftTCAGCGTGGATTTAACCA 3' contains an Xba I reεtriction εite (in bold) followed by the reverse complement of nucleotides corresponding to the carboxy-terminal 5 amino acids and the tranεlational εtop codon (underlined). The reεtriction enzyme εiteε correεpond to the reεtriction enzyme εiteε on the bacterial expresεion vector pQE-9 (Qiagen, Inc. Chatsworth, CA, ) . pQE-9 encodes antibiotic resistance (Ampr), a bacterial origin of replication (ori), an IPTG-regulatable promoter operator (P/0), a ribosome binding site (RBS), a 6-His tag and restriction enzyme εiteε. The VIGF PCR product and pQE-9 were then digested with Hind III and Xba I and ligated together with T4 DNA ligase. The deεired recombinantε would contain the VIGF coding εequence inεerted downεtream from the pQE-9 encoded histidine tag and the ribosome binding εite. The ligation mixture waε then uεed to tranεfor E. coli εtrain M15[pREP4] (Qiagen, Inc.) by the procedure deεcribed in Sambrook, J. et al., Molecular Cloning: A Laboratory Manual, Cold Spring Laboratory Preεε, (1989). M15[pREP4] containε multiple copieε of the plaε id pREP4, which expreεεeε the lad repreεεor and alεo conferε kanamycin resistance (Kanr) . Transformants were identified by their ability to grow on LB plates and ampicillin/kanamycin resistant colonies were selected. Plasmid DNA was isolated and confirmed by restriction analyεiε. Clones containing the desired constructs were grown overnight (O/N) in liquid culture in LB media supplemented with both Amp (100 ug/ml) and Kan (25 ug/ml). The O/N culture was used to inoculate a large culture at a ratio of 1:100 to 1:250. The cellε were grown to an optical density 600 (O.D.600) of between 0.4 and 0.6. IPTG ("Isopropyl-B-D-thiogalacto pyranoside") was then added to a final concentration of 1 mM. IPTG induces by inactivating the lad repressor, clearing the P/O leading to increased gene expression. Cells were grown an extra 3 to 4 hourε εuch that there is an exponential growth culture present. Cellε were then harvested by centrifugation. The VIGF/6-Histidine-containing M15[pREP4] cellε were lysed in 6M GnHCl,50 mM NaP04 at pH 8.0. The lyεate was loaded on a Nickel-Chelate column and the flow-through collected. The column was washed with 6M GnHCl, 50 mM NaP04at pH 8.0, 6.0 and 5.0. The VIGF fusion protein (>90% pure) was eluted at pH 2.0. Samples from the pre-column lysate (Figure 3, lane 2) , column flow through (lane 3), pH 5.0 wash (lane 4) , and pH 2.0 eluate (lane 5) were precipitated with sodium deoxycholate and trichloroacetic acid. For the purpose of renaturation, the pH 2.0 eluate was adjusted to 3 molar guanidine HCI, lOO M sodium phosphate, 10 m olar glutathione (reduced) and 2 mmolar glutathione (oxidized). After incubation in this solution for 12 hours the protein was dialyzed to 10 mmolar sodium phosphate. To run the gel, the pellets were resuεpended in SDS/NaOH and SDS-PAGE loading buffer, heat denatured, then electrophoreεed on a 15% denaturing polyacrylamide gel. The Gibco BRL low range molecular weight εtandard waε alεo electrophoreεed (lane 1). The proteinε were viεualized with Coomaεεie Brilliant Blue R- 250 εtain. Figure 3 shows an SDS-polyacrylamide gel which displayε the results of VIGF purification.
Example 2 Cloning and expresεion of VIGF uεinσ the baculoviruε expression syεtem
The DNA sequence encoding the full length VIGF protein, ATCC # 75874, is digested with the restriction enzymes PvuII and Xbal. The 639 nucleotide PvuII, Xbal fragment contains the entire VIGF coding region pluε 11 and 77 nucleotideε of 5' and 3' untranslated DNA, respectively. This fragment, designated F2, iε iεolated from a 1% agaroεe gel uεing a commercially available kit ("Geneclean" , BIO 101 Inc., La Jolla, Ca.).
The vector pA2 iε used for the expreεεion of the VIGF protein uεing the baculovirus expresεion system (for review see: Summers, M.D. and Smith, G.E. 1987, A manual of methods for baculovirus vectors and insect cell culture procedures, Texas Agricultural Experimental Station Bulletin No. 1555). This expresεion vector contains the strong polyhedrin promoter of the Autographa californica nuclear polyhidroεis virus (AcMNPV) followed by the recognition siteε for the reεtriction endonucleaseε Smal and Xbal. The polyadenylation site of the simian virus (SV)40 is used for efficient polyadenylation. For an easy εelection of recombinant viruεeε the beta-galactoεidaεe gene from E.coli is inserted in the same orientation aε the polyhedrin promoter followed by the polyadenylation signal of the polyhedrin gene. The polyhedrin sequences are flanked at both sides by viral sequences for the cell-mediated homologous recombination of cotransfected wild-type viral DNA. Many other baculovirus vectors could be used in place of pA2 such as, pRGl, pAc373, pVL941 and pAcIMl (Luckow, V.A. and Summers, M.D., Virology, 170:31-39) .
The plasmid is digested with the restriction enzymes S al and Xbal and then dephosphorylated using calf inteεtinal phosphataεe by procedureε known in the art. The DNA is then isolated from a 1% agarose gel using the commercially available kit ("Geneclean" BIO 101 Inc., La Jolla, Ca.). This vector DNA iε designated V2.
Fragment F2 and the dephosphorylated plasmid V2 are ligated with T4 DNA ligase. E.coli strain XL1 Blue (Stratagene Cloning Systems, 11011 North Torrey Pines Road La Jolla, Ca. 92037) are then transformed and bacteria identified that contained the plasmid (pBac VIGF) with the VIGF cDNA using the enzymes BamHI and Xbal. The sequence of the cloned fragment is confirmed by DNA sequencing.
5 μg of the plasmid pBac VIGF is cotransfected with 1.0 μg of a commercially available linearized baculovirus
("BaculoGold™ baculovirus DNA", Pharmingen, San Diego, CA.) using the lipofection method (Feigner et al. Proc. Natl.
Acad. Sci. USA, 84:7413-7417 (1987)). lμg of BaculoGold™ virus DNA and 5 μg of the plasmid pBac VIGF are mixed in a sterile well of a microtiter plate containing 50 μl of serum free Grace's medium (Life Technologies Inc., Gaitherεburg, MD) . Afterwards 10 μl Lipofectin plus 90 μl Grace's medium are added, mixed and incubated for 15 minutes at room temperature. Then the transfection mixture is added dropwise to the Sf9 insect cells (ATCC CRL 1711) seeded in a 35 mm tissue culture plate with 1ml Grace' medium without serum. The plate is rocked back and forth to mix the newly added solution. The plate is then incubated for 5 hours at 27°C. After 5 hours the transfection solution is removed from the plate and 1 ml of Grace's insect medium supplemented with 10% fetal calf serum is added. The plate is put back into an incubator and cultivation continued at 27°C for four days.
After four days the supernatant is collected and a plaque assay performed similar as described by Summers and Smith (supra) . As a modification an agarose gel with "Blue Gal" (Life Technologies Inc., Gaithersburg) is used which allows an easy isolation of blue stained plaques. (A detailed description of a "plaque assay" can also be found in the user's guide for insect cell culture and baculovirology distributed by Life Technologies Inc., Gaithersburg, page 9- 10) .
Four days after the serial dilution, the viruses are added to the cells and blue stained plaques are picked with the tip of an Eppendorf pipette. The agar containing the recombinant viruses is then resuspended in an Bppendorf tube containing 200 μl of Grace's medium. The agar is removed by a brief centrifugation and the supernatant containing the recombinant baculoviruses is used to infect Sf9 cells seeded in 35 mm dishes. Four days later the supematants of these culture dishes are harvested and then stored at 4°C.
Sf9 cells are grown in Grace's medium supplemented with 10% heat-inactivated FBS. The cells are infected with the recombinant baculovirus V-VIGF at a multiplicity of infection (MOD of 2. Six hours later the medium iε removed and replaced with SF900 II medium minus methionine and cysteine (Life Technologies Inc. , Gaithersburg) . 42 hours later 5 μCi of 35S-methionine and 5 μCi 35S cysteine (Amersham) are added. The cells are further incubated for 16 hours before they are harvested by centrifugation and the labelled proteins visualized by SDS-PAGE and autoradiography.
Example 3 Expression of Recombinant VIGF in CHO cells
The vector pN346 is used for the expression of the VIGF protein. Plasmid pN346 is a derivative of the plasmid pSV2- dhfr [ATCC Accession No. 37146] . Both plasmids contain the mouse dhfr gene under control of the SV40 early promoter. Chinese hamster ovary or other cells lacking dihydrofolate activity that are transfected with these plasmids can be selected by growing the cells in a selective medium (alpha minus MEM, Lift Technologies) supplemented with the chemotherapeutic agent methotrexate. The amplication of the DHFR genes in cells resistant to methotrexate (MTX) has been well documented (see, e.g., Alt, F.W., Kellems, R.M. , Bertino, J.R., and Schimke, R.T., 1978, J. Biol. Chem. 253:1357-1370, Hamlin, J.L. and Ma, C. 1990, Biochem. et Biophyε. Acta, 1097:107-143, Page, M.J. and Sydenham, M.A. 1991, Biotechnology Vol. 9:64-68) . Cells grown in increasing concentrations of MTX develop resistance to the drug by overproducing the target enzyme, DHFR, as a result of amplification of the DHFR gene. If a second gene is linked to the dhfr gene it is usually co-aπqplified and overexpressed. Subsequently, when the methotrexate iε withdrawn, cell lineε contain the amplified gene integrated into the chromosome (s) .
Plasmid pN346 contains for the expression of the gene of interest a strong promoter of the long terminal repeat (LTR) of the Rouse Sarcoma Virus (Cullen, et al.. Molecular and Cellular Biology, March 1985, 438-447) plus a fragment iεolated from the enhancer of the immediate early gene of human cytomegalovirus (CMV) (Boshart et al., Cell 41:521-530, 1985) . Downstream of the promoter are the following single restriction enzyme cleavage sites that allow the integration of the genes : BamHI, Pvull, and Nrul . Behind these cloning sites the plasmid contains translational stop codons in all three reading frames followed by the 3' intron and the polyadenylation site of the rat preproinsulin gene. Other high efficient promoters can also be used for the expresεion, e.g., the human β-actin promoter, the SV40 early or late promoters or the long terminal repeats from other retroviruses, e.g., HIV and HTLVI. For the polyadenylation of the mRNA other εignalε, e.g., from the human growth hormone or globin geneε can be used as well.
Stable cell lines carrying a gene of interest integrated into the chromosome can also be selected upon co-transfection with a εelectable marker εuch aε gpt, G418 or hygromycin. It is advantageous to use more than one selectable marker in the beginning, e.g. G418 pluε methotrexate.
The plasmid pN346 iε digested with the restriction enzyme BamHI and then dephosphorylated using calf inteεtinal phoεphatase by procedureε known in the art. The vector iε then iεolated from a 1% agaroεe gel. The DNA sequence encoding the full length VIGF protein, ATCC #75874, is amplified using PCR oligonucleotide primerε corresponding to the 5' and 3' εequenceε of the gene*.
The 5' primer has the εequence 5' ∞CΛGATCTCCX-iCC-ACCMOAA GAGCGTCTΓGCTGCTG 3' and containε a Bglll reεtriction enzyme εite (in bold) followed by 8 nucleotideε resembling an efficient εignal for the initiation of tranεlation in eukaryotic cellε (Kozak, M., J. Mol. Biol., 196:947-950, (1987) ) . The remaining nucleotideε correspond to the amino terminal 7 amino acids including the translational initiation codon (underlined) . The 3' primer has the εequence 5' C--30lGATCrAGCC--TCrcr<-ΑG-A-AATCA<--Α 3' and containε a Bglll reεtriction εite (in bold) and 21 nucleotideε that are the reverse complement of 3' untranslated DNA starting 7 nucleotides downstream from the translational stop codon. The PCR product is digested with Bglll and purified on a 1% agarose gel using a commercially available kit ("Geneclean," BIO 101 Inc., La Jolla, Ca.) . This fragment is then ligated to BamHI digeεted, phosphatased pN346 plasmid with T4 DNA ligaεe. XllBlue (Stratagene) E. coli are transformed and plated on LB, 50 μg/ml ampicillin plates. Colonies bearing the desired recombinant in the proper orientation are screened for by PCR with a 5' primer which corresponds to the Rous sarcoma virus promoter and a 3' primer which corresponds to the reverse complement of VIGF codons 73-79. The sequence of the cloned fragment iε confirmed by DNA εequencing. Transfection of CHO-dhfr-cells
Chinese hamster ovary cells lacking an active DHFR enzyme are used for transfection. -5 μg of the expresεion plasmid pN346VIGF are cotransfected with 0.5 μg of the plasmid pSVneo using the lipofectin method (Feigner et al. , supra) . The plasmid pSV2-neo contains a dominant selectable marker, the gene neo from Tn5 encoding an enzyme that conferε reεistance to a group of antibiotics including G418. The cells are seeded in alpha minus MEM supplemented with l mg/ml G418. After 2 days, the cells are trypsinized and seeded in hybridoma cloning plates (Greiner, Germany) and cultivated from 10-14 days. After this period, single clones are trypsinized and then seeded in 6-well petri dishes using different concentrations of methotrexate (25, 50 nm, 100 nm, 200 nm, 400 nm) . Clones growing at the highest concentrations of methotrexate are then transferred to new 6- well plates containing even higher concentrations of methotrexate (500 nM, 1 μM, 2 μM, 5 μM) . The same procedure is repeated until clones grew at a concentration of 100 μM. The expression of the desired gene product is analyzed by Western blot analysis and SDS-PAGE.
Example 4 Tisεue Localization of VIGF Gene Expreεsion bv Northern Blot Analysis
A multiple tisεue Northern blot (Clontech Laboratories, Inc., 4030 Fabian Way,* Palo Alto, California 94303) containing 2 ug of human adult brain, heart, placenta, lung, liver skeletal muscle, kidney, and pancreas poly A+ mRNA per lane is prehybridized in Church buffer (Church, G. M. & Gilbert, W., Proc. Natl. Acad. Sci. USA 81, 1991-1995 (1984)) at 60°C for one hour. The DNA sequence coding for VIGF, ATCC# 75874, iε amplified from the full length cDNA cloned in pBluescript SK(-) using the M13 Forward (5' GGGTTTTCCCAGTCACGAC 3') and Reverse (5' ATGCTTCCGGCTCGTATG 3') primers. Twenty-five nanogramε of PCR product iε random primer radiolabeled (Prime-It II, Stratagene Cloning Syεtemε, 11011 North Torrey Pines Rd. ,* La Jolla, California 92037) with 3P-dCTP. The heat denatured VIGF probe is added directly to the prehybridization buffer and incubated 16 hr at 60°C. Two ten minute washes are performed in 0.2X SSC, 0.1% SDS at 60°C. Autoradiography is performed at -80°C. A 2.3 kb transcript is seen in lung and kidney after a four day exposure (Figure 4) .
Example 5 Cell-Type Analysis of VIGF Gene Expresεion bv Northern Blot Analysis
Human umbilical vein endothelial, aortic smooth muscle, dermal foreskin fibroblast cellε (Clonetics, 9620 Chesapeake Drive, Suite #201; San Diego, California 92123) were grown to 75-90% confluency. Total RNA is extracted with RNAzol (Biotecx Laboratories, Inc., 6023 South Loop East Houston, Texas 77033) . A 1.2% agarose formaldehyde gel iε prepared and run with 20 ug of total RNA per lane and an RNA ladder εize marker (Life Technologies, Inc., 8400 Helgerman Ct., P.O. Box 6009 Gaitherεburg, Maryland 20884) according to Sambrook et al. (1989) . The RNA iε tranεferred overnight to Hybond N+ (Amersham Corp., 2636 South Clearbrook Drive,* Arlington Heights, Illinois 60005) and bound to the membrane with a Stratalinker UV Crosεlinker (Stratagene Cloning Syεtems, La Jolla, California) . The blot is prehybridized in Church buffer (Church, G. M. & Gilbert, W., PNAS, USA 81:1991-1995 (1984)) at 60°C for one hour. The DNA sequence encoding VIGF, ATCC # 75874, iε amplified from the full length cDNA cloned in pBluescript SK(-) using the M13 Forward (5' GGGTTTTCCCAGTCACGAC 3') and Reverse (5' ATGCTTCCGGCTCGTATG 3') primers. Twenty-five nanograms of PCR product iε random primer radiolabeled (Prime-It II, Stratagene) with 32P-dCTP. The heat denatured VIGF probe is added directly to the prehybridization buffer and incubated 16 hr at 60°C. Two ten minute washes were performed in 0.2X SSC, 0.1% SDS at 60°C. Autoradiography is performed at - 80°C. A 2.3-2.4 kb transcript is seen in umbilical vein endothelial (lane l) and aortic smooth muscle cells (lane 2) after a two hour exposure (Figure 5A) and also in dermal foreskin fibroblast (lane 3) cells after a 36 hour exposure (Figure 5B) .
Numerous modifications and variations of the present invention are possible in light of the above teachings and, therefore, within the εcope of the appended claims, the invention may be practiced otherwise than as particularly described.
SEQUENCE LISTING
(1) GENERAL INFORMATION: (i) APPLICANT: HASTINGS, ET AL.
(ii) TITLE OF INVENTION: Human Vascular IBP-Like Growth
Factor
(iii) NUMBER OF SEQUENCES: 2
(iv) CORRESPONDENCE ADDRESS:
(A) ADDRESSEE: CARELLA, BYRNE, BAIN, GILFILLAN,
CECCHI, STEWART & OLSTEIN
(B) STREET: 6 BECKER FARM ROAD
(C) CITY: ROSELAND
(D) STATE: NEW JERSEY
(E) COUNTRY: USA
(F) ZIP: 07068
(v) COMPUTER READABLE FORM:
(A) MEDIUM TYPE: 3.5 INCH DISKETTE
(B) COMPUTER: IBM PS/2
(C) OPERATING SYSTEM: MS-DOS
(D) SOFTWARE: WORD PERFECT 5.1
(vi) CURRENT APPLICATION DATA:
(A) APPLICATION NUMBER:
(B) FILING DATE: Concurrently
(C) CLASSIFICATION:
(vii) PRIOR APPLICATION DATA
(A) APPLICATION NUMBER:
(B) FILING DATE: (viii) ATTORNEY/AGENT INFORMATION:
(A) NAME: FERRARC, GREGORY D.
(B) REGISTRATION NUMBER: 36,134
(C) REFERENCE/DOCKET NUMBER: 325800-219
(ix) TELECOMMUNICATION INFORMATION:
(A) TELEPHONE: 201-994-1700
(B) TELEFAX: 201-994-1744
(2) INFORMATION FOR SEQ ID NO:l:
(i) SEQUENCE CHARACTERISTICS
(A) LENGTH: 1271 BASE PAIRS
(B) TYPE: NUCLEIC ACID
(C) STRANDEDNESS: SINGLE
(D) TOPOLOGY: LINEAR
(ii) MOLECULE TYPE: CDNA
( i) SEQUENCE DESCRIPTION: SEQ ID NO:l:
CTGCTTCCCA CCAGCAAAGA CCACGACTGG AGAGCCGAGC CGGAGCAGCT GGGAAACATG 60
AAGAGCGTCT TGCTGCTGAC CACGCTCCTC GTGCCTGCAC ACCTGGTGGC CGCCTGGAGC 120
AATAATTATG CGGTGGACTG CCCTCAACAC TGTGACAGCA GTGAGTGCAA AAGCAGCCCG 180
CGCTGCAAGA GGACAGTGCT CGACGACTGT GGCTGCTGCC GAGTGTGCGC TGCAGGGCGG 240
GGAGAAACTT GCTACCGCAC AGTCTCAGGC ATGGATGGCA TGAAGTGTGG CCCGGGGCTG 300
AGGTGTCAGC CTTCTAATGG GGAGGATCCT TTTGGTGAAG AGTTTGGTAT CTGCAAAGAC 360
TGTCCCTACG GCACCTTCGG GATGGATTGC AGAGAGACCT GCAACTGCCA GTCAGGCATC 420
TGTGACAGGG GGACGGGAAA ATGCCTGAAA TTCCCCTTCT TCCAATATTC AGTAACCAAG 480
TCTTCCAACA GATTTGTTTC TCTCACGGAG CATGACATGG CATCTGGAGA TGGCAATATT 540
GTGAGAGAAG AAGTTGTGAA AGAGAATGCT GCCGGGTCTC CCGTAATGAG GAAATGGTTA 600
AATCCACGCT GATCCCGGCT GTGATTTCTG AGAGAAGGCT CTATTTTCGT GAYTGTTCAA 660
CACACAGCCA ACATTTTAGG AACTTTCTAG ATTATAGCAT AAGGACATGT AATTTTTGAA 720
GACCAAATGT GATGCATGGT GGATCCAGAA AACAAAAAGT AGGATACTTA CAATCCATAA 780
CATCCATATG ACTGAACACT TGTATGTGTT TGTTAAATAT TCGAATGCAT GTAGATTTGT 840
TAAATGTGTG TGTATAGTAA CACTGAAGAA CTAAAAATGC AATTTAGGTA ATCTTACATG 900
GAGACAGGTC AACCAAAGAG GGAGCTAGGC AAAGCTGAAG ACCGCAGTGA GTCAAATTAG 960
TTCTTTGACT TTGATGTACA TTAATGTTGG GATATGGAAT GAAGACTTAA GAGCAGGAGA 1020 -
AGATGGGGAG GGGGTGGGAG TGGGAAATAA AATATTTAGC CCTTCCTTGG TAGGTAGCTT 1080 CTCTAGAATT TAATTRTGCT TTTTTTTTTT TTTTTGGGCT TTGGGAAAAG TCAAAATAAA 11 0 ACAACCAGAA AACCCCTGAA GGAAGTAAGA TGTTTGAAGC TTATGGAAAT TTGAGTAACA 1200 AACAGCTTTG ANCTGAGAGC AATTYC-VAAA GGCTGCTGAT QTAGCCCCCG GGTTNCCTNT 1260 NTCT AAGGA C 1271
(2 ) INFORMATION FOR SEQ ID NO : 2 :
(i) SEQUENCE CHARACTERISTICS
(A) LENGTH : 184 AMINO ACIDS
(B) TYPE : AMINO ACID
(C) STRANDEDNESS : •
(D) TOPOLOGY : LINEAR
(ii) MOLECULE TYPE: PROTEIN
(xi) SEQUENCE DESCRIPTION: SEQ ID NO:2:
Met Lys Ser Val Leu Leu Leu Thr Thr Leu Leu Val Pro Ala His
-20 -15 -10
Leu Val Ala Ala Trp Ser Asn Aεn Tyr Ala Val Aεp Cyε Pro Gin
-5 1 5
Hiε Cys Asp Ser Ser Glu Cyε Lys Ser Ser Pro Arg Cys Lys Arg
10 15 20
Thr Val Leu Aεp Aεp Cyε Gly Cys Cys Arg Val Cys Ala Ala Gly
25 30 35
Arg Gly Glu Thr Cys Tyr Arg Thr Val Ser Gly Met Asp Gly Met
40 45 50
Lys Cys Gly Pro Gly Leu Arg Cys Gin Pro Ser Aεn Gly Glu Aεp
55 60 65
Pro Phe Gly Glu Glu Phe Gly lie Cyε -Lyε Aεp Cyε Pro Tyr Gly
70 75 80
Thr Phe Gly Met Aεp Cyε Arg Glu Thr Cyε Aεn Cyε Gin Ser Gly
85 90 95 lie Cyε Asp Arg Gly Thr Gly Lys Cys Leu Lys Phe Pro Phe Phe 100 105 110 Gin Tyr Ser Val Thr Lys Ser Ser Asn Arg Phe Val Ser Leu Thr
115 120 125
Glu His Asp Met Ala Ser Gly Asp Gly Asn lie Val Arg Glu Glu
130 135 140
Val Val Lys Glu Asn Ala Ala Gly Ser Pro Val Met Arg Lys Trp
145 150 155
Leu Asn Pro Arg
160

Claims

ffRT TS t-*τ.aτMwn T.?-
1. An isolated polynucleotide selected from the group consisting of:
(a) a polynucleotide encoding the VIGF polypeptide having the deduced amino acid sequence of Figure 1 or a fragment, analog or derivative of said polypeptide,*
(b) a polynucleotide encoding the VIGF polypeptide having the amino acid εequence encoded by the cDNA contained in ATCC Deposit No. 75874 or a fragment, analog or derivative of said polypeptide.
2. The polynucleotide of Claim 1 wherein the polynucleotide iε DNA.
3. The polynucleotide of Claim 1 wherein the polynucleotide iε RNA.
4. The polynucleotide of Claim 1 wherein the polynucleotide iε genomic DNA.
5. The polynucleotide of Claim 2 wherein εaid polynucleotide encodeε VIGF having the deduced amino acid εequence of Figure l.
6. The polynucleotide of Claim 2 wherein εaid polynucleotide encodeε the VIGF polypeptide encoded by the CDNA of ATCC Deposit No. 75874.
7. The polynucleotide of Claim 1 having the coding sequence of VIGF as shown in Figure 1.
8. The polynucleotide of Claim 2 having the coding sequence of VIGF deposited as ATCC Deposit No. 75874.
9. A vector containing the DNA of Claim 2.
10. A hoεt cell genetically engineered with the vector of Claim 9.
11. A process for producing a polypeptide comprising: expressing from the host cell of Claim 10 the polypeptide encoded by said DNA.
12. A procesε for producing cells capable of expressing a polypeptide comprising genetically engineering cells with the vector of Claim 9.
13. An isolated DNA hybridizable to the DNA of Claim 2 and encoding a polypeptide having VIGF activity.
14. A polypeptide selected from the group conεiεting of (i) a VIGF polypeptide having the deduced amino acid εequence of Figure 1 and fragmentε, analogs and derivatives thereof and (ii) a VIGF polypeptide encoded by the cDNA of ATCC Deposit No. 75874 and fragments, analogs and derivatives of said polypeptide.
15. The polypeptide of Claim 14 wherein the polypeptide is VIGF having the deduced amino acid sequence of Figure 1.
16. An antibody against the polypeptide of claim 14.
17. An antagonist against the polypeptide of claim 14.
18. An agonist for the polypeptide of claim 14.
19. A method for the treatment of a patient having need of VIGF comprising: administering to the patient a therapeutically effective amount of the polypeptide of claim 14.
20. A method for the treatment of a patient having need to inhibit VIGF comprising: administering to the patient a therapeutically effective amount of the antagonist of Claim 17.
21. A pharmaceutical composition comprising the polypeptide of Claim 14 and a pharmaceutically acceptable carrier.
22. The method of Claim 19 wherein said therapeutically effective amount of the polypeptide is adminiεtered by providing to the patient DNA encoding said polypeptide and expressing said polypeptide in vivo.
23. A process for identifying antagonistε to VIGF compriεing*. - contacting cells and a compound to be screened in the presence of VIGF under conditions suitable for the stimulation of cell proliferation by VIGF; and measuring the proliferation of the cells to determine if the compound is an effective antagonist.
2 . A procesε for identifying agoniεtε to VIGF compriεing: contacting cellε and a compound to be εcreened under conditions suitable for the stimulation of cell proliferation by VIGF,* and measuring the proliferation of the cellε to determine if the compound iε an effective agoniεt.
25. A process for diagnosing a diseaεe or a susceptibility to a diseaεe related to a mutation in VIGF nucleic acid εequence compriεing: isolating a nucleic acid sequence encoding VIGF from a sample derived from a hoεt,- and determining a mutation in the VIGF nucleic acid εequence.
26. A diagnostic procesε comprising: analyzing for the presence of the polypeptide of claim 14 in a sample derived from a host.
EP95905378A 1994-12-09 1994-12-09 Human vascular ibp-like growth factor Withdrawn EP0796325A4 (en)

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AU1401495A (en) 1996-06-26

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