Determination of polypeptides and proteins in solutions and biological fluids
The present invention relates to analytical methods for qualitatively and quantitatively determining the presence of polypeptides and proteins in solutions and biological fluids. In particular, it relates to a competitive-type analytical assay system employing antibodies specific for a portion of the amino acid sequence of a polypeptide or protein, and the polypeptide, protein, or a portion thereof as an analytical reagent.
Analytical techniques for molecules of biological importance must be sensitive and specific. Many techniques for analyte assay in biological fluids have been developed to date (Levi Montalcini R. et al., J. EXP. Zool. 116:321, 1951; Varon S. et al., Biochemistry 6:2202, 1967; Angeletti R. H., Proc. Natl. Acad. Sci. USA 65:668, 1970; Harper G. P. et al., Nature 279:160, 1979; Goldstein L. D. et al., Neurochem. Res. 3:175, 1978; Walker P. et al., Life Science 26:195, 1980; Calissano P. et al., Hormonal Prot. Peptides,
XII:2, 1984; Italian Patent Application No. 47745A88; Callegaro et al., Proceedings of the Satellite to the 20th Annual Meeting of the American Society for Neurochemistry, "Trophic Factors and the Nervous System", Columbus, Ohio, March 12-14, 1989, Raven Press, Fidia Research Series - in press; Kingsbury D.T., Falkow S., "Rapid Detection and Identification of Infectious Agents", Academic Press; Levi Kontalcini R. , Science 1237, 1154, 1987).
All these methodologies rely on the availability of one or more monoclonal and/or polyclonal antibodies, or on the availability of the analyte which activates the detection system. In all cases, fairly large quantities of analyte were, and still are, necessary to obtain antibodies by immunization and cloning methodologies, or to develop labelling systems.
The presence or concentration of antigenic substances in biological fluids can be determined by immunoassay techniques. Such techniques are based on the formation of a complex between the antigenic substance being assayed and an antibody in which a member of the complex may be labelled to permit detection or quantitative analysis after separation of the complexed labelled antigen or antibody from uncomplexed labelled antigen or antibody.
In the competitive-type immunoassay technique, the antigenic substance in a sample test fluid competes with a known quantity of labelled antigen for a limited quantity of antibody binding sites. Consequently, the amount of labelled antigen bound to the antibody is inversely proportional to the amount of antigen in the sample. In contrast, immunometric assays employ a labelled antibody, and the amount of labelled antibody associated with the complex is directly proportional to the amount of antigenic substance in the sample fluid.
One currently employed method for identifying the biologically important regions of a protein molecule involves the determination of its hydrophobic and hydrophilic regions. Since hydrophilic regions are normally exposed on the surface of the protein molecule, they are likely to exercise a particular biological function. It may be expected, for example, that they could act as receptor binding regions, or that they represent antigenic sites, capable of inducing the formation of specific antibodies.
Present technology has made it possible to identify different hydrophilic and hydrophobic sites in polypeptides
and proteins corresponding to regions of different antigenicity. For example, Hopp and Woods ((1961) Proc, Natl. Acad. Sci. USA 78:3824) developed an algorithm which is capable of producing the hydrophilic profile of a protein molecule, thus making it possible to assess whether a given peptide of the polypeptide chain tends to place itself on the surface or in the interior of the protein structure. This method takes into consideration a peptide chain between 6 and 10 amino acid residues long, calculating its hydrophilic value by the coefficients assigned to the single amino acid residues. By shifting section by section along the sequence one amino acid at a time, a complete diagram can be obtained (Meier R. et al., EMBO J. 5:1489, 1986). The most hydrophilic sequences correspond to the positive peaks of the Hopp and Woods diagram, and single out the zones most exposed to the solvent. These portions of the molecule could therefore represent potential antigenic sites, and also active sites, i.e., exposed regions of the molecule capable of interacting with other biological macromolecules.
Current technology has evolved to the point where sensitive, highly specific analytical methods must be devised to facilitate polypeptide and protein assay, including polypeptides and proteins with as yet incompletely known biological activities. One such polypeptide is the nerve growth factor (NGF).
There have been numerous in vitro and in vivo studies of NGF on animal models. These have advanced to the state where a potential use for NGF can be hypothesized in the treatment of Alzheimer's disease (Science 243:11, 1989). Recently, other important hypotheses have been put forward regarding a mediatory role for NGF between the central nervous system and the immune system (Aloe L. et al., Proc. Natl. Acad. Sci. USA 1983, 6184:1986; Spillantini M.G. et al., Proc. Natl. Acad. Sci. USA 1986, 8555:1989). There is
therefore an urgent need for a quantitative analytical technique which will facilitate the determination of human NGF, and other medically important polypeptides and proteins, in biological fluids or culture media. Consequently, an analytical method and suitable, specific reagents for the molecule to be analyzed are also needed.
Among the available immunological analytical methods for proteins, the "competitive" system is certainly the most sensitive in terms of specificity. Determination of an analyte in biological liquids by a competitive-type reaction system is performed by incubating the sample, with or without analyte, with a support to which anti-analyte antibodies are bound, usually defined as the solid phase. Subsequently, when the analyte which has not reacted with the antibodies has been eliminated, the solid phase is washed with suitable buffers and incubated with the analyte in question, which can be directly or indirectly labelled with a visualizing agent, for example with a biotin-avidin-enzyme system (Johnson B. et al., J. Immunol. Meth. 115: 219, 1988). There are many detection methods presently available which involve visualization of the interaction between analyte and antibody in the competitive system; many supports, to which antibodies can be adsorbed, are also available. The supports and detection systems are constantly being modified, but the fundamental usefulness of a quantitative and qualitative analytical assay based on a competitive system lies in its specificity, i.e., in its ability to detect unequivocally and exclusively the presence of the analyte of interest in a liquid. Clearly, the ability to recognize the analyte exclusively in one particular structural form, such as that associable with its biological activity, increases the specificity of the analytical assay and consequently the biological significance of the quantitative detection of the analyte in question. In analytical assays, competitive-type specificity is mainly achieved by anti-analyte antibodies and by the labelled analyte used as a tracer.
Accordingly, it is an aspect of the present invention to provide a method for the qualitative or quantitative determination of a polypeptide or protein analyte present in a biological fluid or solution, comprising the steps of:
(a) producing antibodies to a peptide fragment of said polypeptide or protein;
(b) reacting a sample of said biological fluid or solution with said antibodies in the presence of said peptide fragment labelled so as to allow detection of complexes of said antibodies with said labelled peptide fragment;
(c) removing any unreacted biological fluid or solution and labelled peptide fragments from the reaction mixture of step (b);
(d) incubating the remaining antibodies with a reagent capable of detecting antibody-labelled peptide fragment complexes; and
(e) qualitatively and quantitatively detecting or measuring said antibody complexes of step (d).
It is another aspect of the present invention to provide a method for the diagnosis and/or monitoring of a disease, or a therapy therefor, such as a neuroimmunoendocrine disease, a neuroimmunodegenerative disease, a disease of the central nervous system, or a disease of the peripheral nervous system in a human or animal, comprising determining the level of a diagnostically relevant polypeptide or protein in a biological fluid of said human or animal according to the method provided above.
It is a further aspect of the present invention to provide a kit for the qualitative or quantitative determination of a polypeptide or protein analyte present in a biological fluid or solution, comprising:
anti-analyte antibodies specific for a peptide fragment of said polypeptide or protein analyte which are capable of recognizing said polypeptide or protein analyte; and
a peptide fragment which is capable of being recognized by said antibodies, and which is also capable of being detected by a detection system.
It is yet a further aspect of the present invention to provide a method for the determination of human nerve growth factor in a biological fluid or solution, comprising the steps of:
producing polyclonal antibodies to said human nerve growth factor by immunizing a rabbit with synthetic peptide 20-36 of human nerve growth factor;
adsorbing said polyclonal antibodies onto the surface of the wells of a polycarbonate microtitration plate;
placing samples of said biological fluid or solution in said wells in the presence of peptide 20-36 conjugated to biotin and incubating for 24 hours at room temperature;
removing any excess, unreacted reagent and washing said wells with buffer containing bovine albumin and a detergent;
adding avidin-conjugated enzyme to said wells and incubating for a period of time effective to allow avidinbiotin complexes to form;
removing excess reagent by washing said wells; adding enzyme substrate to said washed wells in an appropriate buffer and incubating so as to allow formation of the enzymatic reaction end-product;
measuring the amount of said end-product formed; and
relating the amount of said end-product formed to the amount of said human nerve growth factor with the aid of a standard curve for human nerve growth factor.
Further scope of the applicability of the present invention will become apparent from the detailed description and drawings provided below. However, it should be understood that the detailed description and specific examples, while indicating preferred embodiments
of the invention, are given by way of illustration only, since various changes and modifications within the spirit and scope of the invention will become apparent to those skilled in the art from this detailed description.
The above and other objects, features, and advantages of the present invention will be better understood from the following detailed descriptions taken in conjunction with the accompanying drawings, all of which are given by way of illustration only, and are not limitative of the present invention, in which:
Figure 1 shows the reactivity of human NGF antipeptide 20-36 polyclonal antibodies compared to that of polyclonal antibodies produced by immunization with the 2.5S form of NGF against human NGF in a Western blot: a) polyclonal antibodies produced in rabbit by immunization with NGF peptide 20-36; b) polyclonal antibodies produced in rabbit by immunization with the 2.5S form of NGF and purified by affinity chromatography on peptide 20-36 immobilized on a solid support and on immobilized NGF, respectively. The presence of polyclonal antibodies was detected by means of a commercially available amplification system.
Antisera which are not NGF-related do not react with this protein in Western blots (data not shown).
Detection system: blotted proteins were visualized with anti-rabbit AuroProbe BL plus secondary antibodies (Janssen) following the manufacturer's instructions.
Molecular weights: the Pharmacia low-molecular-weight marker calibration kit was employed.
Figure 2 is a standard curve showing absorbance readings at 492 nm for samples treated as described in
Example 1, infra, disclosing a linear correspondence between the analyte, human NGF, and optical density in the presence competitive immunological assay system.
X axis = ng/ml human NGF
Y axis = B/Bo where:
Bo = absorbance value (in nm) of the standard concentration of the tracer (peptide 20-36 labelled with biotin);
B = absorbance value obtained in the presence of the relative quantity of competitor (human NGF).
The following detailed description of the invention is provided to aid those skilled in the art in practicing the present invention. Even so, the following detailed description of the invention should not be construed to unduly limit the present invention, as modifications and variations in the embodiments herein discussed may be made by those of ordinary skill in the art without departing from the spirit or scope of the present inventive discovery.
The contents of each of the references discussed in the present specification are herein incorporated by reference in their entirety.
The purpose of the present invention is to provide an assay for a soluble polypeptide or protein or their fragments based on the calculation of the hydropathic profile derived from its gene sequence and the consequent amino acid sequence.
The invention is illustrated hereafter by Examples 1 and 2, and exemplifies the assay of the biologically active form of human NGF obtained by recombinant DNA methodology (Italian patent application No. 48564A89). Moreover, within the context of the present invention, the use of NGF must be considered illustrative and not limiting in any way, since the experimental approach on which the invention is based can be applied to all polypeptides and proteins.
NGF from mouse glands behaves as a 7S-type protein complex (molecular weight about 140,000 Daltons) formed by three different subunits (α,β,γ) coordinating a Zn+ atom.
The most interesting part of the 7S molecule, with regard to its biological activity, consists of two polypeptide chains, each with a molecular weight of 13,250 Daltons and formed by 118 amino acids. Each chain or monomer has three disulfide bridges, which form covalent bonds between two cysteine residues, and which confer great stability to the three-dimensional structure of the protein. The two NGF monomers, joined together by weak bonds, form a dimer with a molecular weight of 26,500 D. It has been demonstrated that the biological activity is associated with the dimer called 2.5S, or more commonly, ßNGF.
Among the possible hydrophilic regions of NGF in the Hopp and Woods diagram, the amino acid portion identifiable as 20-36, i.e., the amino acids at positions 20-36 of the NGF polypeptide, was chosen to illustrate the utility of the present invention. The synthetic peptide 20-36 of NGF can be used to produce polyclonal antibodies capable of selectively recognizing and interacting not only with the peptide itself, but also with the entire NGF molecule. This fragment is common to a variety of animal species, facilitating analysis of the NGF protein therein.
The anti-NGF antibodies used in the solid phase, infra, i.e., adsorbed onto the support, were produced by immunizing rabbits via multiple site intradermal injections of the free peptide, absent a carrier, in complete Freund's adjuvant, with a specific NGF fragment, a peptide comprising the amino acid sequence corresponding to portion
20-36. These were purified by affinity chromatography on the same peptide, immobilized on a solid support, obtained from a different synthetic preparation from the one used for immunization. These anti-peptide 20-36 polyclonal antibodies were assessed for cross-reactivity with human
NGF in its biologically active form, 2.5S or ßNGF, cloned and expressed in eukaryotic cells (Italian patent application No. 48564A89).
Assessment of the reactivity of these NGF anti-peptide 20-36 polyclonal antibodies is shown in Figure 1, where it can be seen that rabbit polyclonal antibodies produced by immunization with either NGF peptide 20-36 or the 2.5S form of NGF exhibit the same reactivity with human NGF upon Western blotting.
EXAMPLE 1
Determination of human NGF in culture medium in polycarbonate microtitration Plates. A. Methods
A.1. Coating of the microtitration plate wells with antibodies.
The wells in the polycarbonate microtitration plates were adsorbed on the inside with the previously characterized anti-peptide 20-36 polyclonal antibodies of the NGF polypeptide, diluted in a bicarbonate buffer at pH
9.0, by incubation for 24 hours at room temperature.
The concentration of antibody used to adsorb to the wells ranged between 0.1-10 μg/ml, preferably 1 μg/ml, in carbonate buffer, 0.1M, pH 8.5. Wells were coated with 20 μl-100 μl, preferably 50 μl, of this solution. The value of 50 μl corresponds to 50 ng/well, indicated in Fig. 2.
The wells were then washed with 0.15 mol./litre of phosphate buffer, pH 7.2. A.2. Incubation of the microtitration plates with the sample to be analyzed.
50 μl of analyte sample, at different concentrations, were placed in the wells of the microtitration plate in the presence of peptide 20-36 labelled with biotin (hapten-peptide), and left to incubate for 24 hours at room temperature.
As indicated in Figure 2, the concentration of NGF ranged between 0.1-100 ng/ml. The buffer employed was PBS,
containing 0.1% bovine serum albumin. The quantity of labelled peptide 20-36 ranged from 2-20 ng/ml, preferably 10 ng/ml. This corresponded to 0.5 ng/well.
Any excess, unreacted reagent was then removed, and the wells of the microtitration plate were then washed with
0.15 mol./litre of phosphate buffer, pH 7.2, containing 2% bovine albumin and a non-ionic detergent such as 0.05%
Tween 20.
A.3. Incubation with avidin-labelled enzyme.
The wells prepared as described in Section A.2. were filled with 50 μl of a commercially obtained tracer composed of avidin-labelled enzyme, such as horseradish peroxidase diluted in 0.15M phosphate buffer, pH 7.2, containing 0.05 % Tween 20 and 2% bovine albumin. This was incubated for 4 to 6 hours at room temperature or at 37ºc. Any excess reagent was removed by washing with 0.15M phosphate buffer, pH 7.2.
A.4. Incubation with the enzyme substrate.
The wells treated as described in Section A.3. were filled with 50 μl of a mixture of 0.4 mg/ml of orthσphenylenediamine and 0.2 mg/ml of hydrogen peroxide in 0.1M citrate buffer at pH 5.0. After incubation for 15 minutes, 50 μl of sulfuric acid, 2.5 mol./litri, were added to the wells of the microtitration plates. A.5. Absorbance measurement.
The absorbance of the solutions in the wells of the microtitration plates was measured spectrophotometrically at a wavelength of 492 nm (OD 492 nm). B. Results.
Absorbance readings, taken as described above for the wells containing solutions of human NGF at different concentrations in the culture medium, are plotted in Figure
2, where it can be seen that there is obtained a linear relationship between OD 492 nm and increasing concentrations in ng/ml of human NGF in the analyte sample. Such a standard curve permits the determination in a quantitative manner of human NGF in a sample of interest to be analyzed for the presence of this protein.
EXAMPLE 2
Test kit for the determination of human NGF.
The present invention also concerns a kit containing components necessary to detect the protein or polypeptide of interest. This kit must at least contain anti-peptide antibodies unbound or bound to a support, and the analyte polypeptide or protein, or one of their specific segments, bound to a labelling agent.
Human NGF was determined as described in Example 1 using a multi-assay kit. This kit contained the following:
- Polycarbonate microtitration plates with wells in which are adsorbed anti-peptide 20- 36 polyclonal antibodies which recognize
NGF in its form known as 2.5S or BNGF, and its non-dimeric forms;
- vials containing specific tracers comprising
amino acid sequences recognized by the antipeptide 20-36 antibody; - bottles of phosphate buffer, pH 7.2,
containing bovine albumin;
- bottles containing Tween 20 detergent
solution;
- bottles of substrate containing
orthophenylenediamine and hydrogen peroxide in buffer at pH 5.0;
- vials containing solutions of human NGF at
different concentrations, including a negative control solution;
- written instructions for the assay.
It is possible to use as a support, for example, tubes, microtitration plates or their strips, beads or disks made of glass, plastic, or other substances suitable for this purpose. Given the type of assay, the antibody does not necessarily have to be bound to a support, and can be present free in solution. Should the antibodies not be bound to a support, it is necessary to utilize a chemical or biological precipitating agent such ae polyethylene glycol, or a complexing agent such as protein-A or protein-G.
As labelling/detection agents, it is possible to use enzymes such as horseradish peroxidase, β-galactosidase, or alkaline phosphatase, fluorescent substrates, fluorogenic, chemiluminescent, bioluminescent, radioactive, or metallic molecules, or biotin. If desired, a kit can contain aids for the determination of labelling agents, for example a substrate for the enzyme, and washing or dilution buffers which may or may not contain detergents.
While the present method and kit have been described for the determination of human NGF, and more particularly for the biologically active human form defined as 2.5S orßNGF, the possible applications of anti-peptide antibodies are numerous. For example, such antibodies can be used in immunochemical tests for the quantitative assay of proteins of interest in biological fluids, and for immunoaffinity chromatography, facilitating the purification of the corresponding antigen, which is often present in very low
concentrations and in very complex biological fluids (Corona G. et al., "Synthetic Peptides: Approaches to biological problems", UCLA Symposia Colorado USA 1980).
Any polypeptide or protein analyte can be qualitatively and/or quantitatively detected by the method of the present invention. Examples of proteins which can be detected by the method of the present invention include, but are not limited to, for example, soluble cytokines and growth factors, including the nerve growth factor of human origin. In order to apply the present method to the detection of other polypeptide or protein analytes, it is first necessary to analyze the hydropathic profile of such analytes to facilitate the selection of potentially useful peptide fragment sequences. Next, antibodies can be raised against such selected peptide fragments. Finally, the extent of cross-reactivity of these antibodies with the entire polypeptide or protein molecule can be determined by routine immunological methods. Those peptide sequences that result in the production of antibodies that effectively cross-react with the entire analyte molecule are useful in the present method and kit, and can be employed in the qualitative and/or quantitative detection of polypeptide or protein analytes as described herein.
As would be apparent to the ordinary skilled artisan, the qualitative and quantitative detection of proteins of medical and veterinary significance via the instant method provides a valuable rapid diagnostic tool permitting the diagnosis and monitoring of a wide variety of diseases and therapies. The latter include, but are not limited to, diseases of the neuroimmunoendocrine type, the neuroimmunodegenerative type, such as Alzheimer's disease, multiple sclerosis, Huntington's disease, motoneuron disease, Guillain Barre syndrome, and Parkinson's disease, diseases of the central nervous system, such as those of traumatic, anoxic, degenerative, or toxic-infective origin, diseases of the peripheral nervous system, such as those of
traumatic-compressive, degenerative, dysmetabolic, or toxic-infective origin, etc.
A further advantage of the present inventive method derives from the fact that the peptide sequence employed to produce the antibodies necessary to carry out the analysis of an analyte-containing fluid can be generated from the nucleotide sequence of the target protein or polypeptide. Knowledge of the amino acid sequence of the protein or polypeptide, or availability of the analyte itself, which may be very expensive or in limited supply, is not required. Furthermore, such antibodies can be obtained by immunization with a peptide without the use of adjuvants. Finally, the length of the peptide fragment required is short, varying between 8-30, and preferably about 17, amino acids.
The invention being thus described, it is clear that the same can be modified in various ways. Such modifications are not to be considered as diverging from the spirit and purpose of the present invention, and any modification which would be apparent to one skilled in the art is considered to come within the scope of the following claims.