DK172458B1 - Signal peptide, DNA sequence encoding this peptide, gene structure containing the DNA sequence, plasmid containing DNA sequence - Google Patents

Signal peptide, DNA sequence encoding this peptide, gene structure containing the DNA sequence, plasmid containing DNA sequence Download PDF

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DK172458B1
DK172458B1 DK198502172A DK217285A DK172458B1 DK 172458 B1 DK172458 B1 DK 172458B1 DK 198502172 A DK198502172 A DK 198502172A DK 217285 A DK217285 A DK 217285A DK 172458 B1 DK172458 B1 DK 172458B1
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dna sequence
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Klaus-Peter Koller
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    • C12N15/11DNA or RNA fragments; Modified forms thereof; Non-coding nucleic acids having a biological activity
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    • C12N15/63Introduction of foreign genetic material using vectors; Vectors; Use of hosts therefor; Regulation of expression
    • C12N15/74Vectors or expression systems specially adapted for prokaryotic hosts other than E. coli, e.g. Lactobacillus, Micromonospora
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    • C07K2319/00Fusion polypeptide
    • C07K2319/01Fusion polypeptide containing a localisation/targetting motif
    • C07K2319/02Fusion polypeptide containing a localisation/targetting motif containing a signal sequence

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Abstract

1. Claims for the contracting states : BE. CH. LI. DE. FR. GB. IT. LU. NL. SE DNA sequence B, obtainable from Streptomyces tendae strains, which produce tendamistat and have preferably been treated with sublethal doses of acriflavine, by isolation of the complete DNA, digestion with Pst l, Southern hybridization with the DNA sequence A, 5'-(**32 P-)CCT TCA GTG TCG TCT TCG TA-3' (A) isolation of the 2.3 kb Pst l fragment, cutting with BamHl, Southern hybridization with the sequence A, isolation of the 0.94 kb Pst l-BamHl subfragment, cutting with Sau 3a, Southern hybridization with the sequence A, isolation of the 0.525 kb BamHi-Sau 3a subfragment and sequencing of the DNA, and which has the following features : a) it is located immediately upstream of the tendamistat structural gene, b) it codes at the amino terminal end for Met-Arg-Val-Arg-Ala-Leu-Arg, c) it codes at the carboxyl terminal end for Ala-Ser-Ala and d) it codes in the middle for a hydrophobic region X which comprises 10 to 25, preferably 17 to 20, amino acids. 1. Claims for contracting state AT A process for the preparation of polypeptides composed of genetically codable amino acids, characterized by the expression, in a host cell of the genus Streptomyces, of a gene structure which contains in the reading frame with the structural gene for the desired polypeptide the DNA sequence B of a prepeptide, which sequence is obtainable from Streptomyces tendae strains, which produce tendamistat and have preferably been treated with sublethal doses of acriflavine, by isolation of the complete DNA, digestion with Pst l, Southern hybridization with the DNA sequence A, 5'-(**32 P-)CCT TCA GTG TCG TCT TCG TA-3' (A) isolation of the 2.3 kb Pst l fragment, cutting with BamHI, Southern hybridization with the sequence A, isolation of the 0.94 kb Pst l-BamHl subfragment, cutting with Sau 3a, Southern hybriridization with the sequence A, isolation of the 0.525 kb BamHl-Sau 3a subfragment and sequencing of the DNA, and a) is located immediately upstream of the structural gene, b) codes at the amino terminal end for Met-Arg-Val-Arg-Ala-Leu-Arg, c) codes at the carboxyl terminal end for Ala-Ser-Ala and d) codes in the middle for a hydrophobic region X which comprises 10 to 25 amino acids.

Description

i DK PR 172458 B1in DK PR 172458 B1

Den foreliggende opfindelse angår et signalpeptid, som er en bestanddel af et propeptid, som i en strep-tomycetcelle, der indeholder en signalpeptidase, spaltes i signalpeptidet og et polypeptid, hvorved sidstnævnte 5 fjernes fra cellen og udskilles i dyrkningsmediet. Opfindelsen angår endvidere en DNA-sekvens, som koder for dette signalpeptid, genstrukturer, som indeholder denne DNA-sekvens i læseramme med et strukturgen, et plasmid, som indeholder en sådan DNA-sekvens eller genstruktur, samt en 10 værtsorganisme indeholdende et sådant plasmid. Opfindelsen angår desuden en fremgangsmåde til fremstilling af et polypeptid, hvorved der anvendes en sådan værtsorganisme.The present invention relates to a signal peptide which is a component of a propeptide which, in a streptomycet cell containing a signal peptidase, is cleaved into the signal peptide and a polypeptide, whereby the latter is removed from the cell and secreted into the culture medium. The invention further relates to a DNA sequence encoding this signal peptide, gene structures containing this DNA sequence in read frame with a structural gene, a plasmid containing such DNA sequence or gene structure, and a host organism containing such a plasmid. The invention further relates to a method for producing a polypeptide using such a host organism.

I tysk patentansøgning nr. P 33 31 860.3 foreslås en fremgangsmåde til fremstilling af tendamistat 15 ved hjælp af fermentering af streptomyces tendae, hvilken fremgangsmåde er karakteriseret ved, at der anvendes tendamistat-producerende S. tendae-stammer, som behandles med subletale doser acriflavin, \Jd fra de herved opnåede stammer isoleres et DNA-fragment med genet for 20 tendamistat, nemlig et 2,3-kb-Pst X-fragment. Ved indbygning af dette fragment i en med Pst I snittet pBR 322 kunne dette DNA formeres i E.coli og igen isoleres.German Patent Application No. P 33 31 860.3 proposes a process for the preparation of tendamistat 15 by fermentation of streptomyces tendae, which is characterized by the use of tendamistat-producing S. tendae strains treated with sublethal doses of acriflavine. From the strains obtained, a DNA fragment is isolated by the tendamistat gene, namely a 2,3-kb-Pst X fragment. By incorporating this fragment into a pBR 322 cut with Pst I, this DNA could be propagated in E. coli and isolated again.

Det har nu vist sig, at på dette 2,3-kb-store fragment er umiddelbart foran strukturgenet for tendami-25 stat indkodet et signalpeptid (præpeptid) med formlenIt has now been found that on this 2,3-kb fragment directly in front of the structural gene for tendamist 25, a signal peptide (prepeptide) of the formula is encoded

Met-Arg-Val-Arg-Ala-Leu-Arg-X-Ala-Ser-Ala IMet-Arg-Val-Arg-Ala-Leu-Arg-X-Ala-Ser-Ala I

hvori S er et hydrofobt område, som omfatter 17-20 30 aminosyrer.wherein S is a hydrophobic region comprising 17-20 amino acids.

Opfindelsen angår således et peptid, som er ejendommeligt, at det har formlenThe invention thus relates to a peptide which is peculiar to its formula

Met-Arg-Val-Arg-Ala-Leu-Arg-X-Ala-Ser-Ala 35 2 DK PR 172458 B1 hvor X er et hydrofobt område, som omfatter 10-25, fortrinsvis 17-20 aminosyrer.Met-Arg-Val-Arg-Ala-Leu-Arg-X-Ala-Ser-Ala 35 wherein X is a hydrophobic region comprising 10-25, preferably 17-20 amino acids.

Opfindelsen angår også den tilsvarende DNA-sekvens 5 B, som kan fås ud fra tendamistat-producerende Streptomyces tendae-stammer, som fortrinsvis er behandlet med subletale doser acriflavin, ved isolering af total-DNA'et, fordøjelse med Pst I, Southern-hybridisering med DNA-sekvensen AThe invention also relates to the corresponding DNA sequence 5B which can be obtained from tendamistat-producing Streptomyces tendae strains, which are preferably treated with sublethal doses of acriflavin, by isolating the total DNA, digestion with Pst I, Southern hybridization. with the DNA sequence A

10 5'-(32P-)CCT TCA GTG TCG TCT TCG TA-3' (A) isolering af det 2,3 kb store Pst I-fragment, snitning med BamHI, Southern-hybridisering med sekvensen A, isolering af det 0,94 kb store Pstl-BamHI-subfragment, snitning med Sau 15 3a, Southern-hybridisering med sekvensen A, isolering af det 0,525 kb store BamHI-Sau 3a-subfragment og sekventering af DNA'et, hvilken DNA-sekvens er ejendommelig ved karakteristikaene: 20 (a) den ligger umiddelbart før tendamistat-struktur genet, (b) den koder ved amino-endestillingen for Met-Arg-Val-Arg-Ala-Leu-Arg, 25 (c) den koder ved carboxy-endesti11ingen for Ala-Ser-Ala, og (d) den koder i midten for et hydrofobt område, der 30 omfatter 10-25, fortrinsvis 17-20 aminosyrer.5 '- (32P-) CCT TCA GTG TCG TCT TCG TA-3' (A) isolation of the 2.3 kb Pst I fragment, sectioning with BamHI, Southern hybridization with sequence A, isolation of the 0, 94 kb PstI-BamHI subfragment, sectioning with Sau 15 3a, Southern hybridization with sequence A, isolation of the 0.525 kb BamHI-Sau 3a subfragment and sequencing of the DNA, which is characterized by the characteristics: (A) it encodes immediately before the tendamistat structure of the gene, (b) it encodes at the amino-terminus of Met-Arg-Val-Arg-Ala-Leu-Arg, (c) it encodes at the carboxy terminus of Ala- Ser-Ala, and (d) it encodes in the center of a hydrophobic region comprising 10-25, preferably 17-20 amino acids.

De ved sammenligning med standardmarkører opnåede kb-talværdier har den gængse nøjagtighed.The kb-number values obtained by comparison with standard markers have the usual accuracy.

I stedet for sekvensen A kan der til Southern» 35 3 DK PR 172458 B1 -hybridisering vælges en hvilken som helst sekvens, der er komplementær med tendamistatgenet eller modstrengen.Instead of Sequence A, Southern hybridization may select any sequence that is complementary to the tendamistat gene or the counter strand.

Til de forskellige trin til karakterisering af 5 DNA-sekvensen B indføres i praksis DNA'et i en egnet vektor, denne transformeres i en værtscelle, formeres der, transformanterne fås ved kolonihybridisering med sekvensen A, og DNA isoleres igen. Disse trin er i og for sig kendt.In practice, for the various steps to characterize DNA sequence B, the DNA is introduced into a suitable vector, transformed into a host cell, propagated there, transformants obtained by colony hybridization with sequence A, and DNA isolated again. These steps are known per se.

10 DNA-Sekvensen C, hvis indkodende streng er anført nedenfor i tillægget til beskrivelsen, har nucleotidræk-kefølgen i tendamistat-strukturgenet hidrørende fra S. ten-dae.The DNA sequence C, whose coding strand is listed below in the Appendix to the specification, has the nucleotide sequence of the tendamistat structural gene derived from S. ten-days.

Opfindelsen angår også en genstruktur, som er ejen-15 dommelig ved, at den indeholder DNA-sekvensen B, fortrinsvis umiddelbart i læseramme med et strukturgen, især strukturgenet for tendamistat, navnlig DNA-sekvensen C.The invention also relates to a gene structure which is unique in that it contains the DNA sequence B, preferably immediately in the reading frame with a structural gene, in particular the structural gene for tendamistat, in particular the DNA sequence C.

Opfindelsen angår desuden et plasmid, som er ejendommeligt ved den ovennævnte DNA-sekvens B eller genstruk-20 tur, fortrinvis med et i streptomyceter virksomt replicon og/eller et i E. coli virksomt replicon.The invention further relates to a plasmid which is peculiar to the above DNA sequence B or gene structure, preferably with a streptomyceter replicon and / or an E. coli replicon.

Hvis plasmidet indeholder et i E. coli virksomt replicon, er det i stand til at formepe DNA'et i E. coli og eventuelt også udtrykke det. Hvis pladmidet indeholder et i 25 streptomyceter virksom replicon, bliver en streptomycet transformeret med et sådant plasmid i stand til at udtrykke det ved strukturgenet bestemte peptid i form af propeptidet med formlen II, som så inden for rammen af oparbejdningen spaltes med en signalpeptidase og udskiller det ønskede 30 peptid i dyrkningsmediet.If the plasmid contains an E. coli replicon, it is capable of propagating the DNA of E. coli and optionally also expressing it. If the plasmid contains a 25-streptomycetre replicon, a streptomycet is transformed with such a plasmid capable of expressing the peptide-determined peptide of the formula II, which then cleaves with a signal peptidase within the framework of the reprocessing and secretes it. desired peptide in the culture medium.

Fordelagtige er de såkaldte "shuttle"-plasmider, som indeholder et replicon, der er virksomt både i E. coli og i streptomycter. Disse "shuttle"-vektorer kan formeres i E. coli og efter omisolering transformeres i streptomyceter, 35 hvor så produktionen af det ønskede polypeptid finder sted.Advantageous are the so-called "shuttle" plasmids, which contain a replicon that is active both in E. coli and in streptomycytes. These "shuttle" vectors can be propagated in E. coli and, after re-isolation, transformed into streptomycetes, where production of the desired polypeptide takes place.

4 DK PR 172458 B14 DK PR 172458 B1

Opfindelsen angår også en værtsorganisme af slægten Streptomyces, især arten S. tendae eller S. lividans, som er ejendommelig ved, at den indeholder et plasmid ifølge 5 opfindelsen.The invention also relates to a host organism of the genus Streptomyces, especially the species S. tendae or S. lividans, which is characterized in that it contains a plasmid according to the invention.

Opfindelsen angår endvidere en fremgangsmåde til fremstilling af et polypeptid, hvilken fremgangsmåde er ejendommelig ved, at der anvendes en værtsorganisme ifølge opfindelsen, som indeholder en signalpeptidase, som fra- 10 skiller præpeptidet, der svarer til DNA-sekvensen B.The invention further relates to a method for producing a polypeptide which is characterized in that a host organism according to the invention is used which contains a signal peptidase which separates the prepeptide corresponding to the DNA sequence B.

Medens der til gram-negative bakterier findes en mængde vektorer, er der kun beskrevet få vektorer til gram-positive bakterier. Vektorer til bakterier af arten S. tendae har hidtil ikke været kendt. Opfindelsen åbner 15 således mulighed for adgang til udnyttelse af S. tendae som værtsorganismer.While there are numerous vectors for gram-negative bacteria, only a few vectors for gram-positive bacteria have been described. Vectors for bacteria of the species S. tendae have so far been unknown. Thus, the invention opens up the possibility of access to the utilization of S. tendae as host organisms.

En særlig fordel ved opfindelsen består i, at transformerede streptomyces-stammer, især S. lividans, har optimal sporedannelse, dvs, indholdet af det rekom- 2 0 binante plasmid generer ikke denne stamme i dens generative fase. De transformerede organismer er derfor også egnede til yderligere stanuneforbedringer, f.eks. til fremstilling og udvælgelse af metaboliske mutanter, ved hvis fremstilling der arbejdes med sporer.A particular advantage of the invention is that transformed streptomyces strains, especially S. lividans, have optimal spore formation, i.e., the content of the recombinant plasmid does not generate this strain in its generative phase. The transformed organisms are therefore also suitable for further stanuna improvements, e.g. for the preparation and selection of metabolic mutants by whose preparation is worked on spores.

25 I modsætning til de kendte stammer af S. tendae danner de transformerede stammer, især S. lividans, intet melanin. Derfor bortfalder fraskillelsen heraf, hvilket letter isoleringen af det ønskede peptid, f.eks. tenda- mistat, væsentligt og forhindrer tab af udbytte.25 Unlike the known strains of S. tendae, the transformed strains, especially S. lividans, do not form any melanin. Therefore, the separation thereof lapses, which facilitates the isolation of the desired peptide, e.g. tendency loss, significantly and prevent loss of dividends.

3030

Et yderligere fortrin ved opfindelsen består i, at fremmedgener også eksprimeres i S. lividans og de tilsvarende polypeptider udsondres, hvilket ligeledes giver 35A further advantage of the invention is that foreign genes are also expressed in S. lividans and the corresponding polypeptides are secreted, which also gives 35

OISLAND

5 DK PR 172458 B1 mange muligheder for stammeforbedring og ligeledes for modificering af det således fremstillede polypeptid.5 DK PR 172458 B1 many possibilities for strain enhancement and also for modification of the polypeptide thus produced.

Ifølge opfindelsen kan dog også andre Strepto-mycesarter transformeres, f.eks. S. ghanaensis eller 5 aureofaciens, Dersom plasmidfrie stammer, der er i stand til at syntetisere en specifik signalpeptidase, transformeres med hybridplasmiderne ifølge opfindelsen, fås stabile transformanter, som udtrykker og udsondrer det indkodede peptid, 10 Særlig foretrukne udførelsesformer for opfindel sen vil blive nærmere forklaret i de følgende eksempler. Procentangivelserne er her efter vægt, medmindre andet er anført. Tegningens figurer, der fremstiller hybridplas-mider, viser snitstederne i de rigtige målestoksforhold.However, according to the invention, other Streptomyces species can also be transformed, e.g. S. ghanaensis or 5 aureofaciens, If plasmid-free strains capable of synthesizing a specific signal peptidase are transformed with the hybrid plasmids of the invention, stable transformants are expressed which express and secrete the encoded peptide, particularly preferred embodiments of the invention will be elucidated. explained in the following examples. The percentages here are by weight, unless otherwise stated. The figures in the drawing, which produce hybrid plasmids, show the cut sites in the correct scale conditions.

15 I eksemplerne anvendes følgende fra litteraturen kendte vektorer; enkeltstrengsfagerne M 13 mp 8 og M 13 mp 9; Messing m.fl., Gene 19, 269 (1982), pUC 8: Vierra m,fl,, Gene 19, 259 (1982), pAC 177 og 184: Chang m.fl., J. Bacteriology 134, 1141 (1978) , pIJ 102 og 350: Kieser 20 m.fl., Mol, Gen. Genet. 185, 223 (1982),In the examples, the following vectors known from the literature are used; single strand phages M 13 mp 8 and M 13 mp 9; Brass et al., Gene 19, 269 (1982), pUC 8: Vierra et al., Gene 19, 259 (1982), pAC 177 and 184: Chang et al., J. Bacteriology 134, 1141 (1978) ), pIJ 102 and 350: Kieser et al., Mol, Gen. Genet. 185, 223 (1982),

Hvorledes stammen S, tendae fås, er. beskrevet i USA patentskrift nr, 4,226,764, Isoleringen af tenda-mistagenet kan principielt ske ud fra enhver tendamistat-producerende stamme. Særlig fordelagtig er dog frem-25 gangsmåden ifølge tysk patentansøgning nr. P 33 31 860.3, i hvis eksempel 3 isoleringen af DNA er beskrevet. Dette isolerede total-DNA er udgangsmaterialet for nedenstående eksempel 1.How the strain S, tendae is obtained, is. disclosed in U.S. Patent No. 4,226,764, The isolation of the tendon mist may in principle occur from any tendamistat-producing strain. However, particularly advantageous is the method of German Patent Application No. P 33 31 860.3, in which Example 3 the isolation of DNA is described. This isolated total DNA is the starting material for Example 1 below.

30 Eksempel 1 5^ug DNA fordøjes fuldstændig med restriktionsenzymet Pst I og overføres efter adskillelse til en 0,8%'s agarose-gel på nitrocellulosefilter (Southern-transfer).Example 1 5 µg DNA is completely digested with the restriction enzyme Pst I and transferred after separation to a 0.8% agarose gel on nitrocellulose filter (Southern transfer).

Filteret med det. bundne denaturerede DNA forhybridiseres 35 i 6 timer i 5 ml forhybridiseringsmedium (0,6 molær NaCl, 0,06 molær Na-EDTA, 0,1%'s natriumdodcecylsulfatopløsning,The filter with it. bound denatured DNA is pre-hybridized for 6 hours in 5 ml of pre-hybridization medium (0.6 molar NaCl, 0.06 molar Na-EDTA, 0.1% sodium dodececyl sulfate solution,

OISLAND

6 DK PR 172458 B1 lOO^ug/ml ultralydbehandlet kalvebrissel-DNA og 4 gange koncentreret Denhardt-opløsning. Derpå behandles igen med 5 ml forhybridiseringsmedium, hvortil der dog er tilsat 500.000 cpm/ml radioaktivt mærket DNA. Denne radio- 5 aktivt markerede prøve fås på følgende måde: DNA-Sekvensen A syntetiseres kemisk ved hjælp af phosphit-fremgangsmåden. Den indeholder 20 nucleo-tider (molekylevægt ca, 13.000) og er komplementær med den putative DNA-sekvens for tendamistat, afledt af ami-10 npsyresekvensen ,fra tendamistat fra tendamistats aminosyre 37 ved hjælp af de af E.coli foretrukne tripletter.6 DK PR 172458 B1 100 µg / ml ultrasound treated calf DNA and 4 times concentrated Denhardt solution. Then, again, treat with 5 ml of pre-hybridization medium, to which, however, 500,000 cpm / ml of radiolabeled DNA is added. This radiolabeled sample is obtained as follows: The DNA Sequence A is chemically synthesized by the phosphite method. It contains 20 nucleotides (molecular weight approx. 13,000) and is complementary to the putative DNA sequence for tendamistat, derived from the amino acid sequence, from tendamistat from amino acid 37 of tendamistat using the E. coli preferred triplets.

PNA-Sekvensen A mærkes radioaktivt ved 5'-enden ved hjælp 32 af γ- P-ATP og nucleotid-kinase.The PNA sequence A is radiolabeled at the 5 'end by 32 of γ-β-ATP and nucleotide kinase.

For at hybridisere denne radioaktive prøve til 15 den komplementære DNA-sekvens i total-DNA'et henstår blandingen i 24 timer ved 37°C. Derefter fjernes det ikke-bundne radioaktive DNA, og filteret vaskes ved 37°C 5 x 30 minuuter, hver gang med 200 ml hybridiseringsme-dium og autoradiocjraferes derpå. Efter 24 timers ekspo-20 nering viser hybridiseringssignalerne, at genet ligger på et 2,3 kb langt Pst I-fragment. Dette fragment udvindes ved feiektroeluering på præparativ agarose-gel af en snitdel, der svarer til denne fragmentstørrelse, til opdeling af det med Pstl-fordøjede totale DNA. Det 25 eluerede DNA klones i Pst I-snitstedet i plasmidet pUC 8.To hybridize this radioactive sample to the complementary DNA sequence of the total DNA, the mixture is left for 24 hours at 37 ° C. Then, the unbound radioactive DNA is removed and the filter is washed at 37 ° C for 5 x 30 minutes each time with 200 ml of hybridization medium and then autoradiographed. After 24 hours of exposure, the hybridization signals show that the gene is on a 2.3 kb Pst I fragment. This fragment is recovered by sweep electroelution on preparative agarose gel of a sectional portion corresponding to this fragment size to partition the Pst1 digested total DNA. The 25 eluted DNA is cloned into the Pst I cut site in plasmid pUC 8.

Disse hybridplasmider transformeres til E.coli JM 103 og formeres. Påvisningen af sådanne kloner, som bærer det søgte indsatte stykke med tendamistat-genet, sker ved hjælp af kolonihybridisering ved anvendelse af 30 den radioaktive DNA-prøve A. De således opnåede hybridplasmider pKAI la og lb er fremstillet i tegningens fig.These hybrid plasmids are transformed into E. coli JM 103 and propagated. The detection of such clones carrying the searched insert with the tendamistat gene is accomplished by colony hybridization using the radioactive DNA sample A. The hybrid plasmids pKAI1a and lb thus obtained are prepared in FIG.

1 a og b.1 a and b.

Ved hjælp af yderligere Southern-hybridseringer mod det isolerede 2,3 kb lange Pst I-fragment og dettes 35 subfragmenter kan genet lokaliseres nøjagtigt (fig. 2a til 2c), DK PR 172458 B1 o 7By further Southern hybridizations against the isolated 2.3 kb Pst I fragment and its 35 sub-fragments, the gene can be accurately located (Figs. 2a to 2c), DK PR 172458 B1 o 7

Eksempel 2 I de særlige snitsteder i plasmidet pIJ 102 for Pst I klones 2,3 kb Pst I-fragmentet fra S. tendae. De således opnåede hybridplasmider pAX la og lb, som er for-5 skellige med hensyn til det indsattes orientering, sætter efter transformering i S, lividans-stammer dette i stand til at producere tendamistat. På fig. 3 ses plas-midet pAX la.Example 2 In the particular sectional sites of plasmid pIJ 102 for Pst I, the 2.3 kb Pst I fragment of S. tendae is cloned. The hybrid plasmids pAX 1a and lb thus obtained, which differ in orientation, insert after transformation into S, lividans strains to produce tendamistat. In FIG. 3, the plasmid pAX 1a is seen.

10 Eksempel 3Example 3

Den på markedet værende stamme S. lividans TKThe market strain S. lividans TK

24 (John Innes Institute, Norwich, England) overføres på kendt måde til protoplaater og der tilsættes l,ug hybrid- 8 ' plasmid pAX la med 10 protoplaster under tilsætning af 15 20%fs polyethylenglycol 6000. De transformerede proto plaster dyrkes på regenerationsmedium R2YE [Thompson m. fl., Nature 286, 525 (1980)] ved 30°C i 5 dage.24 (John Innes Institute, Norwich, England) is known in known manner to protoplasts and 1 µg hybrid 8 'plasmid pAX1a is added with 10 protoplasts with the addition of 15 20% fs polyethylene glycol 6000. The transformed protoplasts are grown on regeneration medium R2YE [Thompson et al., Nature 286, 525 (1980)] at 30 ° C for 5 days.

Påvisningen af, at der er dannet en ekstracel-lulær amylase-inaktivator, kan ske ved hjælp af en pla-20 deprøve:The detection of an extracellular amylase inactivator can be established by means of a pla-20 test:

De regenererede kolonier overhældes med 5 ml af en 0,4-1 mg/ml pankreatin-holdig vandig opløsning og inkuberes i en time ved 37°C. Opløsningen fjernes derpå og der tilsættes 5 ml af en 2%'s stivelsesagar. Efter 2 25 timers inkubation ved 37°C overhældes pladerne med 5 ml af en jod-kaliumiodid-opløsning til fremkaldelse. Kolonierne med blå ring viser, . at klonerne syntetiserer og udsondrer tendamistat.The regenerated colonies are poured with 5 ml of a 0.4-1 mg / ml pancreatin-containing aqueous solution and incubated for one hour at 37 ° C. The solution is then removed and 5 ml of a 2% starch agar is added. After 2 hours of incubation at 37 ° C, the plates are poured with 5 ml of an iodine-potassium iodide solution to develop. The blue ring colonies show,. that the clones synthesize and secrete tendamistat.

Som kontrol kan man ud fra tendamistat-produce-30 rende godt sporedannende stammer Isolere plasmid-DNA’et og kortlægge dette. Alle tendamistat-producerende stammer frembyder det indsatte plasmid-DNA.As a control, from the tendamistat-producing well-spore-forming strains, the plasmid DNA can be isolated and mapped. All tendamistat-producing strains present the inserted plasmid DNA.

Eksempel 4 35 Fremgangsmåden i eksempel 2 benyttes, idet der dog anvendes plasmidet pIJ 350, der som selektionsmarkørExample 4 The procedure of Example 2 is used, however, using the plasmid pIJ 350, which as the selection marker

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8 DK PR 172458 B1 i streptomyceter bærer et thiostrepton-resistensgen.8 DK PR 172458 B1 in streptomycetes carries a thiostrepton resistance gene.

Herved fås hybridplasmiderne pAX 350 a og b (forskellige med hensyn til det indsattes orientering).Hereby the hybrid plasmids pAX 350 a and b are obtained (different in orientation of the insert).

Fig. 4 viser plasmidet pAX 350 a.FIG. 4 shows the plasmid pAX 350 a.

5 Efter transformation ifølge eksempel 3 udvælges på minimalmedium [Hopwood, Bacteriological Reviews 31, 373-403 (1967)] i nærvær af 50^ug/ml thiostrepton resistente kloner, og disse afprøves enten direkte på minimalmedium eller efter omstrygning på ikke-selektiv R2YE-10 -agar med hensyn til tendamistat-produktion.After transformation of Example 3, select on minimal medium [Hopwood, Bacteriological Reviews 31, 373-403 (1967)] in the presence of 50 µg / ml thiostrepton resistant clones and these are tested either directly on minimal medium or after scrubbing on non-selective R2YE -10 agar for tendamistat production.

Eksempel 5Example 5

Hybridplasmider, som indeholder Pst X-fragmen-tet på 2,3 kb og foruden streptomycet-repliconet også 15 indeholder et E.coli-replicon, har som shuttle-vekto-rer en række fordele: på grund af E. coli-repliconet og de i E.coli virksomme resistensmarkører kan de formeres godt i disse organismer. Efter isolering og transformation i streptomyceter, især S. lividans, udviser 20 de høj stabilitet. Som følge af deres selektionsmarkører, der er virksomme i streptomyceter, og streptomycet-repliconet kan de også formeres godt i disse organismer og eksprimerer og udskiller tendamistat.Hybrid plasmids containing the 2.3 kb Pst X fragment and, in addition to the streptomycet replicon, also contain an E. coli replicon, have as shuttle vectors a number of advantages: because of the E. coli replicon and the resistance markers active in E. coli can be propagated well in these organisms. After isolation and transformation in streptomycetes, especially S. lividans, 20 exhibit high stability. Due to their selection markers active in streptomycetes and the streptomycet replicon, they can also propagate well in these organisms and express and secrete tendamistat.

Plasmidet pAC 184 fordøjes helt med restrik-25 tionsenzymet Sal I, og enzymet fjernes ved hjælp af phenol/chloroform-ekstraktion, De udragende 5'-ender fyldes i nærvær af ATP, CTP, GTP og TTP ved hjælp af enzymet DNA-polymerase (Klenow-fragment). Til de stumpe ender (blunt ends) ligateres ved en ligase-reaktion 30 ved 16°C et Pst-I-meliemstykke med strukturen 5’TCG AGC TGC AGC TCG A 3' 3' AGC TCG ACG TCG AGC T 5' 35 (2^ug mellemstykke bil Q,4^,ug DNA) , DNA’et ekstraheres med phenol/chloroform, og efter fældning fordøjes det medPlasmid pAC 184 is fully digested with the restriction enzyme Sal I and the enzyme is removed by phenol / chloroform extraction. The protruding 5 'ends are filled in the presence of ATP, CTP, GTP and TTP by the enzyme DNA polymerase ( Klenow fragment). To the blunt ends, at a ligase reaction 30 at 16 ° C, a Pst-I glue piece of structure 5'TCG AGC TGC AGC TCG A 3 '3' AGC TCG ACG TCG AGC T 5 '35 (2 µg intermediate car Q, 4 µg DNA), the DNA is extracted with phenol / chloroform and, after precipitation, digested with

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9 DK PR 172458 B1 enzymet Pst I til udvinding af de ligaterbare Pst I-ender.9 DK PR 172458 B1 the enzyme Pst I to recover the ligatable Pst I ends.

DNA'et dephopshoryleres derpå, ekstraheres igen med phen-ol/chloroform og ligateres med det med Pst I delvis fordøjede plasmid pAX la. Ligationsblandingen transforme-5 res i E. coli (HB 101 eller MC 1061). Mod chloramphenicol resistente kloner renses fra pladen, og DNA'et isole res. S. lividans TK 24 transformeres med l-2^,ug DNA og arprøves med hensyn til tendamistat-produktion,The DNA is then dephosphorylated, extracted again with phenol / chloroform and ligated with the partially digested plasmid pAX 1a with Pst I. The ligation mixture is transformed into E. coli (HB 101 or MC 1061). Chloramphenicol resistant clones are purified from the plate and the DNA isolated. S. lividans TK 24 is transformed with 1-2 µg DNA and tested for tendamistat production,

Kloner, der reagerer positivt ved tendamistat-10 -prøven, isoleres, plasmid-DNA’et isoleres ved alkalisk hurtiglyse og tilbagetransformeres i E. coli HB 101 eller MC 1061, De efter formering atter isolerede plasmi-der adskiller sig ikke fra de ud fra S. lividans-stammer isolerede plasmider. Alt efter orienteringen af det ind-15 satte, som barer tendamistat-genet, betegnes de rekombi-nante plasmider som pSA 2 a eller b (fig. 5 a og b).Clones that respond positively to the tendamistat-10 assay are isolated, the plasmid DNA is isolated by alkaline flashlight and back-transformed into E. coli HB 101 or MC 1061. The post-proliferated isolates do not differ from the S. lividans strains isolated plasmids. Depending on the orientation of the insert carrying the tendamistat gene, the recombinant plasmids are designated as pSA 2a or b (Figs. 5a and b).

Eksempel 6Example 6

Fremgangsmåden ifølge eksempel 5 anvendes, idet 20 der dog startes med plasmid pAX 350 a, der udvælges i E. coli med hensyn til chloramphenicol-resistens og i S. lividans med hensyn til thiostrepton-resistens og tendamistat-produktion, og herved fås plasmiderne pSA 351 a og b (fig. 6 a/b).The procedure of Example 5 is used, however, starting with plasmid pAX 350a selected in E. coli for chloramphenicol resistance and in S. lividans for thiostrepton resistance and tendamistat production, thereby obtaining the plasmids pSA 351 a and b (Fig. 6 a / b).

2525

Eksempel 7Example 7

Fremgangsmåden ifølge eksempel 5 anvendes, idet der dog startes med plasmidet pAC 177 i stedet for pAC 184, og herved fås plasmiderne pSA 3 a og b (fig. 7 a/b).The procedure of Example 5 is used, however, starting with plasmid pAC 177 instead of pAC 184, thereby obtaining plasmids pSA 3 a and b (Fig. 7 a / b).

30 Hertil snittes plasmidet pAX 1 a partielt medFor this, plasmid pAX 1a is partially incised

Pst I, og enzymet varmeinaktiveres ved 15 minutters opvarmning til 68°C. DNA’et ligateres i det med Pst I snittede dephosphorylerede og deproteinerede plasmid pAC 177. Efter transformation af E. coli HB 101 eller 35 MC 1061 renses de over for kanamycin resistente kloner fra pladen, plasmid-DNA'et isoleres, og S, lividans TKPst I, and the enzyme is heat inactivated at 15 minutes heating to 68 ° C. The DNA is ligated into the Pst I section dephosphorylated and deprotected plasmid pAC 177. After transformation of E. coli HB 101 or 35 MC 1061, they are purified against kanamycin resistant clones from the plate, the plasmid DNA is isolated and S, lividans TK

DK PR 172458 B1 o 24 transformeres med l-2^ug af dette DNA. Tendamistat- producerende kloner udvælges og plasmiderne karakterise res .DK PR 172458 B1 o 24 is transformed with 1-2 µg of this DNA. Tendamistat-producing clones are selected and the plasmids are characterized.

ίο 5 Eksempel 8Example 5

Der gås frem ifølge eksempel 7, men i stedet for plasmidet pAX 1 anvendes plasmidet pAX 350 a, og der selektioneres i S. lividans med hensyn til thiostrepton--resistens, hvorved der fås plasmiderne pSA 352 a og b 10 (fig. 8 a/b).Proceed according to Example 7, but instead of plasmid pAX 1, plasmid pAX 350 a is used and selected in S. lividans for thiostrepton resistance to obtain plasmids pSA 352 a and b 10 (Fig. 8 a / b).

Eksempel 9Example 9

Som det fremgår af fig. 2, er det gen, der koder for tendamistat og signalsekvensen ca. 0,3 kb stort.As shown in FIG. 2, the gene encoding tendamistat and the signal sequence is approx. 0.3 kb in size.

15 Det i de ovenstående beskrevne eksempler anvendte fragment på 2,3 kb kan altså anvendes i forkortet form til konstruktion af hybridplasmider, som bevirker produktion af tendamistat;Thus, the 2.3 kb fragment used in the above examples can be used in abbreviated form to construct hybrid plasmids which produce tendamistat production;

Plasmidet pKAI 1 a fordøjes med Sal I og religa-20 teres. Der fås således det med ca. 750 basepar forkortede plasmid pKAI 2, Dette klones, isoleres og snittes med Pst I, DNA’et dephosphoryleres med alkalisk phosphatase fra kalvetarm og deproteiniseres med phenol/chlo-roform, 25 Plasmidet pIJ 102 snittes helt med Pst I, og fragmenterne ligateres i Pst I-snitstedet i pKAI 2 efter varmeinaktivering af enzymet. Ligationsblandingen transformeres i E. coli HB 101 eller MC 1061. Plasmid-DNA'et isoleres ud fra kloner, der er resistente mod ampicillin, 30 ved hjælp af alkalisk hurtig-lyse;og S, lividans TK 24 transformeres med l-2^ug af dette DNA, Der selektioneres ud fra tendamistat-produktion, og plasmid-DNAfet i disse kloner isoleres ved hjælp af alkalisk hurtig-lyse.The plasmid pKAI 1a is digested with Sal I and religated. Thus, it is available with approx. 750 base pairs abbreviated plasmid pKAI 2, This is cloned, isolated and sectioned with Pst I, the DNA dephosphorylated with calf intestinal alkaline phosphatase and deproteinized with phenol / chloroform, the plasmid pIJ 102 cut completely with Pst I, and the fragments ligated into Pst The I-site of pKAI 2 after heat inactivation of the enzyme. The ligation mixture is transformed into E. coli HB 101 or MC 1061. The plasmid DNA is isolated from clones resistant to ampicillin 30 by alkaline rapid lysis; and S, lividans TK 24 is transformed with 1-2 µg of this DNA is selected from tendamistat production and the plasmid DNAf in these clones is isolated by alkaline rapid lysis.

Efter tilbagetransformation i E.coli HB 101 eller MC 1061 35 og efter isolering af plasmid-DNA'et fra de transformerede E.coli-stammer bestemmes plasmid pSA 1 ved hjælpAfter reverse transformation in E. coli HB 101 or MC 1061 35 and after isolation of the plasmid DNA from the transformed E. coli strains, plasmid pSA 1 is determined by

IIII

DK PR 172458 B1 o af restriktionsanalyse (fig. 9). Plasmidet viser ingen forskelle fra de ud fra S. lividans-stairaner isolerede plasmlder, men DNA-oparbejdningen ud fra E.coli er rigeligere og sker på kortere tid.DK PR 172458 B1 o of restriction analysis (Fig. 9). The plasmid shows no differences from the plasmids isolated from S. lividans-stairans, but the DNA work-up from E.coli is more abundant and occurs in a shorter time.

55

Eksempel 10Example 10

Fremgangsmåden i eksempel 9 benyttes, men der anvendes i stedet for plasmidet pIJ 102 plasmidet pIJ 350, hvorved der i S.lividans så yderligere kan selek-10 tioneres efter thiostrepton-resistens, så at der fås plas-miderne pSA 350 a eller b. Fig. 10 viser plasmidet pSA 350 a. Dette plasmid fører i rystekultur til højere udbytter af tendamistat end plasmidet pSA 350 b, som indeholder det indsatte med tendamistat-genet i omvendt ori-15 entering. Derimod har formindskelsen af det indsatte til 1,5 kb ingen signifikant indflydende på produktdannelsen.The procedure of Example 9 is used, but instead of the plasmid pIJ 102, the plasmid pIJ 350 is used, whereby in S.lividans it can then be further selected for thiostrepton resistance to obtain plasmids pSA 350 a or b. FIG. Figure 10 shows the plasmid pSA 350a. In shake culture, this plasmid leads to higher yields of tendamistat than the plasmid pSA 350b, which contains the insert with the tendamistat gene in reverse orientation. By contrast, reducing the insert to 1.5 kb has no significant influence on product formation.

Eksempel 11Example 11

Til konstatering af tendamistat-genets struktur og nu-20 cleotidsekvens klones det 0,94 kb stor Pst Ι-Bam HI-sub-fragment (fig. 2 a og b) samt det 295 kb store Sau 3a--Bam HI-subfragment (fig. 2c) ind i enkeltstréngsfagerne M 13 mp 8 og M 13 mp 9. Som igangsætter til di-deoxy-sekvenseringsreaktionen anvendes DNA-sekvensen A, som 25 omfatter 20 nucleotider samt en på markedet værende 15 kb-stor igangsætter (Bethesda Research Laboratories GmbH, Neu-I.senburg) . Der fås DNA-sekvensen C.To determine the structure of the tendamistat gene and the nucleotide sequence, the 0.94 kb Pst Ι-Bam HI sub-fragment (Figs. 2a and b) and the 295 kb Sau 3a - Bam HI sub-fragment (clone) are cloned ( Fig. 2c) into the single strand phages M 13 mp 8 and M 13 mp 9. As initiator of the di-deoxy sequencing reaction, the DNA sequence A, which comprises 20 nucleotides as well as a commercially available 15 kb starter (Bethesda Research Laboratories), is used. GmbH, Neu-I.senburg). The DNA sequence C is obtained

Eksempel 12 30 Foran tendamistats strukturgen findes der på DNA'et en åben aflæsningsramme indtil startcodonet ATG (met) for et protein, som er lejret sømløst foran tendamistats aminoendestilling. Til dette signalpeptid svarer DNA-sekvensen B.Example 12 In front of the tendamistat structural gene, there is an open reading frame on the DNA until the start codon ATG (met) for a protein that is stored seamlessly in front of the tendamistat amino terminus. This signal peptide corresponds to the DNA sequence B.

3535

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12 DK PR 172458 B112 DK PR 172458 B1

Tillæg: DNA-Sekvens C (kodende strsncri 5 10 5'-GAC ACG ACC GTC TCC GAG CCC GCA CCC TCC TGC GTG 5 Nl^-Asp Thr Thr Val Ser Glu Pro Ala Prc Ser Cys Val 15 20Appendix: DNA Sequence C (Encoding Size 5 10 5'-GAC ACG ACC GTC TCC GAG CCC GCA CCC TCC TGC GTG 5 Nl -Asp Thr Thr Val Ser Glu Pro Ala Prc Ser Cys Val 15 20

ACG CTC TAC CAG AGC TGG CGG TAC TCA CAG GCC GACACG CTC TAC CAG AGC TGG CGG TAC TCA CAG GCC GAC

Thr Leu Tyr Gin Ser Trp Arg Tyr Ser Gin Ala Asp 25 30 35 10 AAC GGC TGT GCC GAG ACG GTG ACC GTG AAG GTC GTC Asn Gly Cys Ala Glu Thr Val Thr Val Lys Val Val ««o 5Thr Leu Tyr Gin Ser Trp Arg Tyr Ser Gin Ala Asp 25 30 35 10 AAC GGC TGT GCC GAG ACG GTG ACC GTG AAG GTC GTC Asn Gly Cys Ala Glu Thr Val Thr Val Val Val Val «« o 5

TAC GAG GAC GAC ACC GAA GGC CTG TGC TAC GCC GTCTAC GAG GAC GAC ACC GAA GGC CTG TGC TAC GCC GTC

Tyr Glu Asp Asp Thr Glu Gly Leu Cys Tyr Ala Val 15 50 55 εοTyr Glu Asp Asp Thr Glu Gly Leu Cys Tyr Ala Val 15 50 55 εο

GCA CCG GGC CAG ATC ACC ACC GTC GGC GAC GGC TACGCA CCG GGC CAG ATC ACC ACC GTC GGC GAC GGC TAC

Ala Pro Gly Gin Ile Thr Thr Val Gly Asp Gly Tyr 65 70Ala Pro Gly Gin Ile Thr Thr Val Gly Asp Gly Tyr 65 70

ATC GGC TCG CAC GGC CAC GCG CGC TAC CTG GCT CGCATC GGC TCG CAC GGC CAC GCG CGC TAC CTG GCT CGC

2020

Ile Gly Ser His Gly His Ala Arg Tyr Leu Ala Arg TGC CTT TAG-3'Ile Gly Ser His Gly His Ala Arg Tyr Leu Ala Arg TGC CTT TAG-3 '

Cys Leu Stp 25Cys Leu Stp 25

Eksempler 1 og 3 i tvsk patentansøgning P 33 31 860.3 Eksempel 1 2Examples 1 and 3 of TV patent application P 33 31 860.3 Example 1 2

Mutationsmetode: Ca. 0,25 cm sporedannet mycelium 30 af stammen DSM 2727, der dyrkes på havregrynsagar (EP-A 49 847), podes i 100 ml Erlenmeyer-kolber, der er fyldt med følgende dyrkningsmedium:Mutation method: Approx. 0.25 cm of spore-forming mycelium 30 of strain DSM 2727 grown on oatmeal agar (EP-A 49 847) is seeded in 100 ml Erlenmeyer flasks loaded with the following culture medium:

Sojamel 2 % Ammoniumcitrat 0,1%Soybean meal 2% Ammonium citrate 0.1%

Glucose 3 % Maltekstrakt 0,5% 35 Majsstivelse 0,2% KH2P04 0,2%Glucose 3% Malt extract 0.5% Maize starch 0.2% KH2PO4 0.2%

Urinstof 0,1% DK PR 172458 B1 o 13Urea 0.1% DK PR 172458 B1 o 13

Mediet autoklaveres i 30 minutter ved 121°C og 1 bar, pH værdien er 7,0. Podekolberne inkuberes i 2 dage ved 30°C på en rystemaskine. Derpå podes 2 ml af den dyrkede forkultur over i 20 ml af hovedkulturmed-5 diet, som findes i 100 ml-Erlenmeyer-kolberne (EP-A 49847).The medium is autoclaved for 30 minutes at 121 ° C and 1 bar, the pH value is 7.0. The seed flasks are incubated for 2 days at 30 ° C on a shaker. Then, 2 ml of the cultured preculture is inoculated into 20 ml of the main culture medium contained in the 100 ml Erlenmeyer flasks (EP-A 49847).

Opløselig stivelse 2-4% Skummetmælkspulver 0,7%Soluble starch 2-4% Skimmed milk powder 0.7%

Sojamehl 0,4% Glucose 1,0%Soybean meal 0.4% glucose 1.0%

Fl. majsstøbevæske 0,4% (NH4)2HP04 1,2% 10Fl. corn casting liquid 0.4% (NH4) 2HPO4 1.2% 10

Mediets pH-værdi er efter autoklavering 7,6.After autoclaving, the pH of the medium is 7.6.

Til dette medieum tilsættes acriflavin i en koncentration på 10-25^ug/ml som mutagent middel. Kulturen rystes i 5 dage ved 28°C og 220 o/min. Derpå cen-15 trifugeres kulturopløsningen (1300 G, 5 minutter), og cellepellet?en i hovedkulturmediet vaskes. De vaskede celler fragmenteres med en glashomogenisator og udstry-ges på agarplader med følgende medium: Rørsukker 0,3 % Tryptonsojanæringssuppe 0,5% 20 Dejcstrin 1,5 % (Fa. Oxoid)To this medium, acriflavine is added at a concentration of 10-25 µg / ml as a mutagenic agent. The culture is shaken for 5 days at 28 ° C and 220 rpm. The culture solution is then centrifuged (1300 G, 5 minutes) and the cell pellet in the main culture medium washed. The washed cells are fragmented with a glass homogenizer and smeared on agar plates with the following medium: Cane sugar 0.3% Tryptone Soybean Soup 0.5% 20 Stage Step 1.5% (Fa. Oxoid)

NaCl 0,05 % Kødekstrakt 0,1% K2HP04 0,05 % (Fa. Difco)NaCl 0.05% Meat Extract 0.1% K2HPO4 0.05% (Fa. Difco)

FeS04 x 7 H20 0,001% Gærekstrakt 0,2%FeS04 x 7 H2 O 0.001% Yeast extract 0.2%

Agar (Fa. 1,5 % (Fa, Difco) 25 Merck)Agar (Fa. 1.5% (Fa, Difco) 25 Merck)

Opløsningen pH-værdi er 7,1 (autoklaveringsbetingelser som ovenfor).The solution pH is 7.1 (autoclaving conditions as above).

Pladerne dyrkes i 5 dage ved 28°C, og enkeltkolonier podes over i skråtstillede glas med 30 havregrynsagar. Disse dyrkes som beskrevet, indtil myceliet har dannet sporer. Det sporedannede mycelium formeres som beskrevet ovenfor i for- og hovedkulturen, og kulturfiltratet prøves efter 5-dages hoveddyrkning for indhold af tendamistat (jfr. EP-A 49 847) . På denne må-35 de kan stammerne 1-9353, 1-9362, 1-9417 og 1-9418 selektioneres, som i deres vækstperiode under de beskrevne DK PR 172458 B1 o 14 betingelser producerer ca. 90.000-100.000 I.E, tendami-stat/liter dyrkningsopløsning svarende til 1,5-1,8 g inaktivator/liter.The plates are grown for 5 days at 28 ° C, and single colonies are seeded in sloped glass with 30 oatmeal agar. These are grown as described until the mycelium has formed spores. The spore-forming mycelium is propagated as described above in the pre- and main culture, and the culture filtrate is tested after 5-day main culture for tendamistate content (cf. EP-A 49 847). In this way, strains 1-9353, 1-9362, 1-9417 and 1-9418 can be selected, which during their growth period under the described conditions PR PR 172458 B1 o 14 produce approx. 90,000-100,000 I.E., tendami state / liter culture solution corresponding to 1.5-1.8 g inactivator / liter.

5 Eksempel 3Example 3

Isolering af desoxyribonucleinsyre ud fra 5. tendae og dennes molekylærbiologlske karakteristik._Isolation of deoxyribonucleic acid from the 5th tendae and its molecular biological characteristics._

Dyrkningen af celler sker ifølge eksempel 1.The culture of cells is done according to Example 1.

Efter 3 dages vækst i hoveddyrkningsmediet høstes celler-io i en Erlenmeyer-kolbe ved hjælp af centrifugering i 5 minutter ved 3000 G og 4°C og vaskes to gange med 50 ml af en opløsning af 50 mmolær Tris/HCl-puffer, 100 mmolær NaCl og 25 mmolæf EDTA.After 3 days of growth in the culture medium, cells io are harvested in an Erlenmeyer flask by centrifugation for 5 minutes at 3000 G and 4 ° C and washed twice with 50 ml of a solution of 50 mmolar Tris / HCl buffer, 100 mmolar NaCl and 25 mmol EDTA.

Ved en typisk fremstilling dybfryses chokag-15 tigt 3 g fast-centrifugerede celler i flydende nitrogen ved -198°C og homogeniseres derpå med en hakkeknivhomo-genisator (Warring Commercial Blender) i nærvær af N2 til et fint pulver. Dette pulver tages op i 10 ml af den nævnte puffer, opløses på is og inkuberes med 0,8 20 ml lysozymopløsning (30 mg/ml) i 20 minutter ved 28°C under let rystning. Til suspensionen tilsættes så 0,8 ml af en proteinase-K-opløsning (15 mg/ml) og 0,8 ml af en 20%'s opløsning af natriumsaltet af N-lauroylsarcosin.In a typical preparation, shock-frozen 3 g solid-centrifuged cells are frozen in liquid nitrogen at -198 ° C and then homogenized with a chopping knife blender (Warring Commercial Blender) in the presence of N2 to a fine powder. This powder is taken up in 10 ml of the said buffer, dissolved on ice and incubated with 0.8 20 ml of lysozyme solution (30 mg / ml) for 20 minutes at 28 ° C with light shaking. Then 0.8 ml of a proteinase K solution (15 mg / ml) and 0.8 ml of a 20% solution of the sodium salt of N-lauroylsarcosine are added to the suspension.

Efter forsigtig blanding inkuberes blandingen i 30 mi-25 nutter på is og yderligere i 15 minutter ved stuetemperatur, Efter tilsætning og opløsning af 22 g fast cae-siumchlorid justeres voluminet med ovennævnte puffer til 22 ml, og suspensionen centrifugeres ved 12,000 G og 4°c i 25 minutter, Til det klare centrifugat tilsættes ethi-30 diumbromid, og brydningsindekset justeres refraktometrisk med CsCl til n - 1,3920. Efter præprativ ultracentrifu-gering (120,000 G, 36 timer, 15°C) fjernes båndene af chromosomalt DNA fra centrifugeglassene og centrifugeres under de samme betingelser. De isolerede bånd befries 35 ved udrystning med n-butanol for ethidiumbromid og dialyseres til fuldstændig fjernelse af CsCl. Det således o 15 DK PR 172458 B1 udvundne DNA kan snittes f.eks. med enzymerne Pst I,After gentle mixing, the mixture is incubated for 30 minutes on ice and further for 15 minutes at room temperature. After adding and dissolving 22 g of solid calcium chloride, the volume of the above buffer is adjusted to 22 ml and the suspension is centrifuged at 12,000 G and 4 ° For 25 minutes, to the clear centrifugate is added ethidium bromide and the refractive index is refractometrically adjusted with CsCl to n - 1.3920. After preparative ultracentrifugation (120,000 G, 36 h, 15 ° C), the bands of chromosomal DNA are removed from the centrifuge tubes and centrifuged under the same conditions. The isolated bands are freed by shaking with n-butanol for ethidium bromide and dialyzed to completely remove CsCl. The DNA thus obtained may be cut e.g. with the enzymes Pst I,

BamHI, Sau 3A, Cla I, Bgl II og Xho I og kan ikke snit-tes med f.eks. endonucleaserne Eco RI og Hind III.BamHI, Sau 3A, Cla I, Bgl II and Xho I and cannot be cut with e.g. the endonucleases Eco RI and Hind III.

Det f.eks. ud fra mutanterne 1-9353 og 1-9362 5 udvundne DNA karakteriseres i forhold til DNA fra ATCC 31210 og DSM 2727 ved hjælp af et forstærket genetisk element, hvis enkeltfragmenter fremtræder klart synligt efter farvning med fluorescensfarvestoffet ethidiumbro-mid på baggrund af ikke selektivt formerede fragmenter.It for example. DNAs extracted from mutants 1-9353 and 1-9362 are characterized relative to DNA from ATCC 31210 and DSM 2727 by an amplified genetic element whose single fragments appear clearly visible after staining with the fluorescence dye ethidium bromide on the basis of non-selectively propagated fragments.

10 Størrelsen af de forstærkede element samt de karakteristiske enkeltfragmenter efter fordøjelse med restrik-tionsendonucleaser gengives nedenfor:The size of the reinforced element as well as the characteristic single fragments after digestion with restriction endonucleases are reproduced below:

Fragment Fragmentstørrelse (kbp)Fragment Fragment size (kbp)

Nr.__Pst I_Xho I_Bam Η INo.__ Pst I_Xho I_Bam Η I

15 1 9,0 13,5 7,2 2 7,0 11,5 6,1 3 6,8 9,3 5,3 4 4,6 2,8 2,9 5 3,¾ 0,7 2,6 20 6 3,1 2,5 7 2,3 2,15 8 1,1 2,1 9 1,5 10 1,2 25 11 1,1 12 1,0 13 0,8 1¾ 0,5 15__0,H8 30 ialt 37T3 37^8 37, i 3 3515 1 9.0 13.5 7.2 2 7.0 11.5 6.1 3 6.8 9.3 5.3 4 4.6 2.8 2.9 5 3, ¾ 0.7 2, 6 20 6 3.1 2.5 7 2.3 2.15 8 1.1 2.1 9 1.5 10 1.2 25 11 1.1 12 1.0 13 0.8 1¾ 0.5 15__0, H8 30 total 37T3 37 ^ 8 37, i 3 35

Claims (8)

1. Peptid, kendetegnet ved, at det har formlen1. Peptide, characterized in that it has the formula 2. DNA-Sekvens B, som KAP fås ud fra tendamistat-producerende Streptomyces tendae-stammer, som fortrinsvis er behandlet med subletale doser acriflavin, ved isolering af total-DNA'et, fordøjelse med Pst I, southern-hybridisering med DNA-sekven-15 sen A 5'-(32P-)CCT TCA GTG TCG TCT TCG TA-3' A * isolering af det 2,3 kb store Pst I-fragment, snitning med BamHI, southern-hybridisering med sekvensen A, iso- 2 0 lering af det 0,94 kb store PstI-BamHI-subfragment, snitning med Sau 3a, southern-hybridisering med sekvensen A, isolering af det 0,525 kb store BamHI-Sau 3a-subfragment og sekventering af DNA'et, kendetegnet ved karakteristikaene: 25 (a) den ligger umiddelbart før tendamistat-struktur-genet, (b) den koder ved amino-endestillingen for Met-Arg-Val-Arg-Ala-Leu-Arg, (c) den koder ved carboxyendestillingen for 30 Ala-Ser-Ala, og (d) den koder i midten for et hydrofobt område, som omfatter 10-25, fortrinsvis 17-20 aminosyrer. 35 DK PR 172458 B12. DNA Sequence B, which KAP is derived from tendamistat-producing Streptomyces tendae strains, which are preferably treated with sublethal doses of acriflavin, by isolation of the total DNA, digestion with Pst I, southern hybridization with the DNA sequence -15 late A 5 '- (32P-) CCT TCA GTG TCG TCT TCG TA-3' A * isolation of the 2.3 kb Pst I fragment, sectioning with BamHI, southern hybridization with sequence A, iso-2 0lation of the 0.94 kb PstI-BamHI sub-fragment, sectioning with Sau 3a, southern hybridization with the sequence A, isolation of the 0.525 kb BamHI-Sau 3a sub-fragment, and sequencing of the DNA, characterized by the characteristics: (A) it encodes immediately before the tendamistat structure gene, (b) it encodes at the amino-terminus of Met-Arg-Val-Arg-Ala-Leu-Arg, (c) it encodes at the carboxy terminus of 30 Ala-Ser -Ala, and (d) it encodes in the center of a hydrophobic region comprising 10-25, preferably 17-20 amino acids. 35 DK PR 172458 B1 3. Genstruktur, kendetegnet ved, at den indeholder DNA-sekvensen B, fortrinsvis umiddelbart i læseramme med et strukturgen, især strukturgenet for tendamistat, navnlig DNA-sekvensen c.3. A gene structure, characterized in that it contains the DNA sequence B, preferably immediately in the reading frame with a structural gene, in particular the structural gene for tendamistat, in particular the DNA sequence c. 4. Plasmid, kendetegnet ved en DNA-sek- vens ifølge krav 2 eller 3, fortrinsvis med et i streptomy-ceter virksomt replicon og/eller et i E. coli virksomt repli-con.A plasmid characterized by a DNA sequence according to claim 2 or 3, preferably with a streptomy site replicon and / or an E. coli replicon. 5. Værtsorganisme af slægten Streptomyces, især 10 arten S. tendae eller S. lividans, kendetegnet ved, at den indeholder et plasmid ifølge krav 4.Host organism of the genus Streptomyces, especially the species S. tendae or S. lividans, characterized in that it contains a plasmid according to claim 4. 5 Met-Arg-Val-Arg-Ala-Leu-Arg-X-Ala-Ser-Ala hvor X er et hydrofobt område, som omfatter 10-25, fortrinsvis 17-20 aminosyrer.Met-Arg-Val-Arg-Ala-Leu-Arg-X-Ala-Ser-Ala where X is a hydrophobic region comprising 10-25, preferably 17-20 amino acids. 6. Fremgangsmåde til fremstilling af et polypeptid, kendetegnet ved, at der anvendes en værtsorganisme ifølge krav 5, som indeholder en signalpeptidase, som fra- 15 skiller præpeptidet, der svarer til DNA-sekvensen B.A method for producing a polypeptide, characterized in that a host organism according to claim 5 is used which contains a signal peptidase which separates the prepeptide corresponding to the DNA sequence B. 7. Fremgangsmåde ifølge krav 6, kendetegnet ved, at polypeptidet efter fraskillelse af præpeptidet fjernes fra cellen.Method according to claim 6, characterized in that the polypeptide is removed from the cell after separation of the prepeptide. 8. Fremgangsmåde ifølge krav 6 eller 7, k e n - 20 detegnet ved, at der anvendes en værtsorganisme med et plasmid, som indeholder en genstruktur ifølge krav 3. 25 30 35A method according to claim 6 or 7, characterized in that a host organism with a plasmid containing a gene structure according to claim 3. is used.
DK198502172A 1984-05-17 1985-05-15 Signal peptide, DNA sequence encoding this peptide, gene structure containing the DNA sequence, plasmid containing DNA sequence DK172458B1 (en)

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DE19843418274 DE3418274A1 (en) 1984-05-17 1984-05-17 SIGNAL PEPTIDE FOR THE EXCRETION OF PEPTIDES IN STREPTOMYCETS
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CA1295563C (en) * 1985-11-01 1992-02-11 Robert T. Garvin Production of active proteins containing cystine residues
CA1295566C (en) * 1987-07-21 1992-02-11 Robert T. Garvin Characterization and structure of genes for protease a and protease b from streptomyces griseus
DE3707150A1 (en) * 1987-03-06 1988-09-15 Hoechst Ag TENDAMISTAT DERIVATIVES
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US5426036A (en) * 1987-05-05 1995-06-20 Hoechst Aktiengesellschaft Processes for the preparation of foreign proteins in streptomycetes
DE3714866A1 (en) * 1987-05-05 1988-11-24 Hoechst Ag METHOD FOR THE PRODUCTION OF FOREIGN PROTEINS IN STREPTOMYCETES
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