CN1263851C - Heavy PSME1 gene for pig to pass breast, and its prepn. method - Google Patents

Heavy PSME1 gene for pig to pass breast, and its prepn. method Download PDF

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CN1263851C
CN1263851C CNB031562418A CN03156241A CN1263851C CN 1263851 C CN1263851 C CN 1263851C CN B031562418 A CNB031562418 A CN B031562418A CN 03156241 A CN03156241 A CN 03156241A CN 1263851 C CN1263851 C CN 1263851C
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gene
pig
sequence
psme1
dna
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CN1498896A (en
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李奎
王彦芳
余梅
刘榜
潘佩文
熊统安
樊斌
赵书红
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Huazhong Agricultural University
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Abstract

The present invention relates to a method for cloning and preparing a sow ablactation weight PSME1 gene and an application of the gene, which belongs to the technical field of the genetic engineering of animals, and a cloned cDNA sequence and a cloned DNA sequence are respectively disclosed in the sequence table SEQIDNO 1 to 2. The method for cloning and preparing a sow ablactation weight PSME1 gene comprises the following preparing steps: the cloning process of a computer, the total RNA extracting process of the tissue of the spleen of a pig, the cloning and sequence measuring process of RACE and RACE products, the obtaining process of a full-length cDNA sequence, the designing process of primers, the amplifying process of genome DNA, the obtaining process of part of genome DNA sequences of the PSME1 gene, the detecting process of RFLP polymorphism, the association analyzing process of the RFLP polymorphism and ablactation weight and the detecting process of SSCP polymorphism. The present invention discloses the full-length cDNA sequence of the PSME1 gene of the pig, part of genome DNA sequences of the PSME1 gene of the pig and two pairs of primers for preparing the genome DNA sequences and also discloses the abrupt changes C741-T741 and C802-G802 of two sites in the genome DNA sequences and a technique for detecting the ablactation weight of the pig by the PSME1-RFLP polymorphism, and the present invention provides a new mark for the mark auxiliary breeding process of the pig.

Description

Pig weaning weight PSME1 gene and preparation method thereof
Technical field
The invention belongs to animal gene engineering technology field, relate in particular to pig weaning weight PSME1 gene and preparation method thereof
Background technology
In recent years, Chinese scholars has been carried out a large amount of research to the relation of pig genetic marker and production performance.Suitable genetic marker is carried out seed selection in early days for carrying out marker assisted selection, and it is of great advantage improving the seed selection accuracy and quickening genetic progress.
Weaning weight is an important indicator of weighing fertility of sow, and weightening finish and slaughter weight during it and the fattening of pig are strong positive correlation.In general, the great piglet of weaning has the speed of growth and the higher price of deed preferably, short pork pig feeding period and lower feeding cost is arranged, the economic benefit height.It is great to wean, and illustrates that its early growth speed is fast on the one hand, illustrates that on the other hand its health immunologic function is good, and disease resistance is strong, and it is the main foundation of roughly selecting.Though some unit has begun to carry out " improving the heavy popularization of weaned piglet " test determination,, this important indicator of weaning weight still is not subjected to enough attention of hereditary worker, is phoenix feathers and unicorn horns to its correlative study yet.
Li Wen equality is selected big Yorkshire, and landrace and duroc have carried out 19 blood parameters to be measured, and has analyzed the correlationship of they and weaning weight.The result shows that the degree of correlation of weaning weight and biochemical indicator there are differences between kind.Alkaline phosphatase (AKP) activity of big yorker, copper oxydase (CP) activity, protein content and weaning weight are strong positive correlation; Landrace weaning weight and amylase activity, copper oxidase activity, glucose content are strong positive correlation, and with inorganic phosphorus (Pi), potassium ion and oxonium ion content are negative correlation; Duroc weaning weight and biochemical indicator degree of correlation are very low, and (Li Wen equality, several external pig variety blood parameters are in the discussion of weaning weight relation.Agricultural University Of Hunan's journal 200026 (1): 58-60).
Near major histocompatibility complex (the Majorhistocompatibility complex No. 7 karyomit(e) kinetochore of pig is engaged in the Rothschild laboratory for a long time, MHC) gene haplotype and pig birth weight, weaning weight, the speed of growth, the research of proterties such as proterties such as the thickness of backfat are relevant, they think that there are correlationship (Rothschild MF in mhc gene haplotype and above-mentioned production performance, Identification ofquantitative trait loci and interesting candidate genes in the pig:progress and prospects.Proc 6th WCGALP1998,26:403-409).
Li Fenge etc. have carried out association analysis to the production traits of follitropin beta (FSH-β) gene microsatellite locus polymorphism and pig, (Li Fenge, research is set up to the regulation and control and the regulation and control thereof of reproductive trait in pig ESR and FSH-β site to find this gene and weaning weight significant correlation is arranged.The doctorate paper.Wuhan, Hua Zhong Agriculture University, 2002).The follitropin beta assignment of genes gene mapping is (Mellink etc. on No. two karyomit(e)s of pig, PCRamplification and physical localization of the genes for pig FSH-β and LH-β cytogenet cell genet, 1995,70:224-227).
PSME1 genes encoding 20S proteasome incitant PA28 α.PA28 α is one of important regulatory factor of 20S proteasome, this subunit is at the external peptidase activity that activation 20S proteasome is arranged, PA28 α and PA28 β form heterodimer, can increase the 20S proteasome and produce the ability that is suitable for the multiple peptide substrate of MHCI quasi-molecule bonded, improve maximum reaction velocity (zhang etc., The proteasomeactivator 11S regulator or PA28J Biol Chem, 1998,273 (46): 30660-30668).
At present existing people, mouse, rat and zebra fish (McCusker etc., Organization of the genes encoding the humanproteasome activators PA28 α and β .Immunogenetics 1999,49:438-445; Jiang etc., Sequence and expressionof mouse proteasome activator PA28 and the related autoantigen Ki.Immunol, 1997,46:93-98.; Murray etc., Immunoproteasome assembly and antigen presentation in mice lacking both PA28 α and PA28 β .The EMBOJoumal 2001,20 (21): PSME1 gene organization structure 5898-5907), expression and functional study report.The cDNA total length of people and mouse PSME1 gene is cloned and is checked order.Northern Blotting analysis revealed, the PSME1 gene is in immuning tissue, as the higher (Jiang etc. of the expression amount in spleen, thymus gland and the testis, Sequence and expression of mouse proteasome activator PA28and the relatedautoantigen Ki.Immunol, 1997,46:93-98).People and mouse PSME1 gene all are positioned in (.Molecular properties of the proteasome activator PA28 family proteins and γ-intefferom regulation.Genes cells 1997 such as Tanahashi, 2:195-211 on No. 14 karyomit(e); Nadeau, Mouse chromosome 14.Mamm Genome 1996,6:245-255).The PSME1 gene has 11 exons, and the 4th the intron 5 ' end of mouse PSME1 gene is not GT, but GC.This does not conform to the GT/AG rule.This very rare splice site the experiment proved that, can be cut exactly in the montage process of mRNA, all be than the speed of cutting the GT sequence slowly many.In the mankind's PSME1 gene, also there is identical phenomenon to have (Kohda K etc., Characterization of the Mouse PA28 Activator Complete Organizations of the Three Member Genes and aPhysical Map of the 150-Kb Region containing the α-subunit and β-subunit Genes.The Joumal ofImmunology 1998,160:4923-4935; McCusker D etc., Organization of the genes encoding the humanproteasome activators PA28 α and β .Immunogenefics 1999,49:438-4451999).
System's generation analysis revealed PSME1 gene is detected in selachian at first, and MHC also is detected in this vertebrates at first.This gene is because participate in the angtigen presentation process of MHCI quasi-molecule mediation, so the investigator infers that the PSME1 gene is relevant with the immunity system of animal.The researchist inquires into the function of this gene with the mouse that knocks out gene.People such as Preckel think, the mouse that lacks the PSME1 gene, the assembling of its immunity protease body and immunne response have been suffered damage (Preckel T etc., Impaired ImmunoproteasomeAssembly and Immune Responses in PA28-/-Mice.Science 1999,286:2162-2165), and scholars such as Murata think the assembling of PSME1 gene and immunity protease body and immunne response it doesn't matter, but can reduce the proteolytic activity that depends on ATP.The prerequisite of the angtigen presentation that they are not all, and only process (the Murata S etc. that play a key role with certain antigen, Immunoproteasome assembly and antigen presentation in mice lacking both PA28 α and PA28 β .The EMBOJournal 2001,20 (21): 5898-5907).
But it is still blank to the research of pig PSME1 gene both at home and abroad at present.
Summary of the invention
The objective of the invention is to the PSME1 gene cDNA total length of clone pig, the PSME1 gene is carried out chromosomal localization, the application of its preparation method and its gene pleiomorphism.
The present invention is achieved through the following technical solutions:
One boar weaning weight PSME1 gene, its full length cDNA sequence is as described in the sequence table SEQ ID NO:1.
Its genomic dna sequence is as described in the sequence table SEQ ID NO:3.
The PSME1 gene cDNA total order that is obtained is classified 1039bp as, wherein comprises the open reading frame as accompanying drawing 3 described 750bp, the 5 ' non-translational region of 121bp and the 3 ' non-translational region of 168bp.
There is a base mutation C741-T741 at the 741st bit base place of sequence table SEQ ID NO:3, causes SphI-RFLP polymorphism (Restriction Fragment Length Polymorphism).
There is a base mutation C802-G802 at the 802nd bit base place of sequence table SEQ ID NO:3, does not cause the variation of restriction enzyme site.
The dna sequence dna of forward and reverse primer that detects the 741 base mutation C741-T741 of bit base place is as described in sequence table SEQ ID NO:4 and the sequence table SEQ ID NO:5.
The dna sequence dna of forward and reverse primer that detects the 802 base mutation C802-G802 of bit base place is as described in sequence table SEQ ID NO:6 and the sequence table SEQ ID NO:7.
Preparation is as the method for gene order as described in the sequence table SEQ ID NO:1, according to following steps:
(1) personnel selection PSME1 gene cDNA is the information probe, does the homologous sequence screening, obtains the expressed sequence tag of homology more than 90%; Then EST is spliced; Design 5 ' and 3 ' RACE (Rapid Amplification of cDNA ends) primer; Extract the pig spleen total tissue RNA and do the cDNA first chain reverse transcription; The purifying of the pcr amplification of RACE and RACE product clone and order-checking, obtain sequence as sequence table SEQ ID NO:1 by sequential analysis.
(2) preparation is as the method for gene order as described in the sequence table SEQ ID NO:3, according to following steps:
Extracting DNA from the pig blood genome, is template design primer with pig PSME1 gene cDNA sequence, and pcr amplification, PCR product purification and cloning and sequencing obtain the nucleotide sequence shown in sequence table SEQ ID NO:3.
The method of using PCR-RFLP detects the polymorphism of pig PSME1 gene C 741-T741, and according to its genotype, tentatively judges the weaning weight of pig.We also use the polymorphism of the method detection pig PSME1 gene C 802-G802 of PCR-SSCP.The present invention provides a new genetic marker for the molecular breeding of pig.
The invention will be further described:
1.PSME1 the clone of full length gene cDNA
(1) design of primers:
(the GenBank number of including: NM_006263) be the information probe of personnel selection PSME1 gene cDNA, utilize the BLAST instrument among the NCBI in GenBank pig est database, to do the homologous sequence screening, obtain a series of homologys and be the ESTs (fragment length is greater than 100bp) more than 90%, the number of including of these ESTs is inquired about corresponding sequence with ENTREZ (http://www.ncbi.nlm.nih.gov/Web/Search/index.htrnl) in NCBI, use the ASSEMBLY program construction pig EST-contig among the GeneTool then.According to EST splicing sequences Design 3 ' RACE and 5 ' RACE primer.Sequence is as follows:
5’-TCCGTGAAGACCTGTGTACCAAG-3’(3’RACE)
5’-AACCTTCTCCTGGACAGCCACTC-3’(5’RACE)
(2) RACE technology
Utilize TRIzoL test kit (U.S. GIBCO company) to extract total RNA from the fragrant pig spleen tissue of growing up, concrete operations are carried out according to the test kit specification sheets.Total RNA is dissolved in the ultrapure water that the RACE test kit provides, and measures its A260nm value with Beckman DU640 nucleic acid protein concentration determination instrument, and passes through its integrity of formaldehyde gel electrophoresis detection of 1.2%.
Utilize RACE test kit (U.S. CLONTECH company) to carry out the terminal rapid amplifying of cDNA, concrete operations are undertaken by the test kit specification sheets.
(3) purifying of RACE product, clone and order-checking
The purifying of RACE product: under ultraviolet lamp, contain the segmental gel of purpose from the cutting-out of low melting-point agarose gel, put into the 1.5mlEpendorff pipe, being incubated to gel in 70 ℃ melts fully, use PCR product purification test kit (Promega) purified pcr product then, according to the operation of test kit specification sheets, concrete steps are to add 1ml Resin, mixing 20s in the gel that per 300 μ l melt, with the Resin/DNA mixture syringe of packing into, slurries are extruded by Minicolumn.In syringe, add 80% Virahol 2ml again, touching piston makes Virahol extrude by Minicolumn, take off Minicolumn and pack in the 1.5ml Ependorff pipe, 10, the centrifugal 2min of 000g is with dry Resin, Minicolumn is packed in another clean 1.5ml Ependorff pipe, add 30~50 μ l aqua sterilisas, leave standstill 1min, 10, the centrifugal 20s of 000g is stored in the Ependorff pipe with eluted dna.
Ligation: purifying RACE product is connected with the pGEM-T carrier, and the ligation cumulative volume is 5 μ l, comprising 2.5 μ l2 * buffer, and the T carrier of 0.5 μ l, the purified pcr product of 0.5 μ l, the T of 0.5 μ l 4Ligase enzyme adds 1 μ l aqua sterilisa at last and puts 4 ℃ of water-baths and spend the night.
The preparation of competent cell: the single colony inoculation of DH5 α of picking is in 2ml LB from 37 ℃ of fresh flat boards of having cultivated 16~20h, in 37 ℃ of shaking culture 3h, switching 1ml bacterium liquid continues to treat OD at 37 ℃ of about 4h of shaking culture in the saline bottle that contains 30ml LB 600Reach at 0.3~0.4 o'clock with saline bottle and take out from shaking table and put ice bath cooling 10~15min, then bacterium liquid is changed in the centrifuge tube in 4 ℃ 4, the centrifugal 10min of 000g is with collecting cell, centrifuge tube is inverted abandoning clean nutrient solution, with the CaCl of the 0.1mol/L of 10ml ice precooling 2Resuspended precipitation, ice bath 30min repeats 4 ℃ 4, and the centrifugal 10min of 000g once ices the CaCl of the 0.1mol/L of precooling with 4ml 2Resuspended precipitation, it is standby to put 4 ℃ of preservations.
Transform: get 100~120 μ l competent cells under the sterile state in 1.5ml Ependorff pipe, the connection product of 5 μ l is added mixing, place 30min on ice, 42 ℃ of heat shock 90s, do not shake the Ependorff pipe therebetween, take out back ice bath 3~4min, add the LB liquid nutrient medium of 400 μ l antibiotic-frees, 37 ℃ of shaking culture 45min.Get 100 μ l and coat in advance that 4h has been coated with on the agar plate of IPTG (Isopropylthio-β-D-galactoside, isopropylthio-) and X-gal, be inverted cultivation after keeping flat 1h for 37 ℃.
The a small amount of preparation of plasmid: the single bacterium colony on the picking flat board is inoculated among the 2-3ml LB 37 ℃ of 300r/min overnight incubation.With the centrifugal several seconds collection of 1.5miEP pipe 12000r/min thalline.Every pipe adds the ice-cold solution I of 100 μ l [50mM glucose, 25mM Tris.Cl (pH8.0), 10mM EDTA (pH8.0)], and vortex vibrates to thalline and fully suspends.Add solution II [0.2M NaOH, 1%SDS] the 200 μ l of new preparation, put upside down mixing fast, ice bath 5min adds solution III [5M potassium acetate, glacial acetic acid 11.5ml, the H of precooling then 2O28.5ml] 150 μ l, ice bath 5min behind the mixing, the centrifugal 5min of 12000r/min, supernatant is gone in another EP pipe, add phenol: chloroform: primary isoamyl alcohol 500 μ l, vortex vibration, the careful upper strata water of drawing in centrifugal back, the dehydrated alcohol that adds 2 times of volumes,-20 ℃ of precipitation 30min, the centrifugal 5min of 12000r/min, precipitation is with 70% washing with alcohol 2 times, drain, add the TE 20 μ l that contain the RNA enzyme.
The enzyme of recombinant plasmid is cut evaluation: get 3 μ l plasmid DNA and an amount of distilled water mixing, making its cumulative volume is 15 μ l, add restricted endoenzyme EcoRI of 2-3U and the corresponding 10X restriction enzyme reaction of 2 μ l damping fluid, flick tube wall mixing and centrifugal, put 37 ℃ of water-bath 1-2 hours, get 2-3 μ l reaction solution and detect in agarose gel electrophoresis, enzyme is cut the result and is estimated identical person, is the purpose recombinant plasmid.Recombinant plasmid adopts the terminal cessation method of two deoxidations to check order on automatic dna sequencer, and sequencing is finished by Shanghai Bo Ya Bioisystech Co., Ltd.
(4) the dna sequence dna homology search is identified:
By the American National biotechnology (NCBI of information center, National Center for Biotechnology Information, http://www.ncbi.nlm.nih.gov) BLAST of website (Basic Local Alignment Search Tool) software, the known physiological function gene of announcing in the dna sequence dna that order-checking back is obtained and the GenBank database carries out sequence homology relatively, with evaluation with obtain the function information of this dna sequence dna.
2. physical positioning:
The experiment material that is used for physical positioning
With pig * rodents somatic cell hybrid plate (Pig * rodent somatic cell hybrid panel, SCHP) carry out the chromosomal region location, with common pig radiation hybrid panel (the INRA-Minnesota porcine radiation hybrid panel that makes up of U.S. Minnesota university, IMpRH) carrying out karyomit(e) accurately locatees, two cover somatic cell hybrid plates are by French Martin doctor Yerle (Laboratoire de G é n é tique Cellulaire, INRA, Castanet-Tolosan France) is so kind as to give.
Wherein SCHP comprises 27 individual cells hybrid cells systems, and 1~No. 19 is pig * hamster somatic cell hybrid clone, and 20~No. 27 is pig * mouse somatic cell hybrid clone, and with hamster, mouse and pig genomic dna as positive control (Yerle etc., 1996).Identify that through cytogenetics this hybrid plate has kept whole 18 euchromosomes and the X chromosome except that Y chromosome of pig, wherein contain 127 non-overlapped chromosomal regions, pig karyomit(e) that is comprised in each clone and chromosome segment information can obtain from WWW (http://www.toulouse.inra.fr/lgc/lgc.html/).
The radiation dose that IMpRH uses is 7,000-rad.IMpRH comprises 118 pigs * hamster radiation hybrid cell line, and hamster and pig genomic dna positive control, qualification result with 757 marks shows that the average mark rate of retaining among the IMpRH is 29.3%, include 128 linkage groups, 18 pairs of euchromosomes and X chromosome have been covered, be used to estimate that the kb/cR ratio of distance between mark is~70kb/cR (1Ray=100cR) that theoretical resolution is 145kb.
(3) PCR somatotype condition
Carrying out amplification PCR reaction cumulative volume is 15 μ l, and wherein template DNA is 20ng, contains 1 * buffer (Promega), 1.5mmol/LMgCl 2, the dNTP final concentration is 150 μ mol/L, the primer final concentration is 0.2 μ mol/L, 2U Taq archaeal dna polymerase (Promega).The pcr amplification program is: 94 ℃ of 3min, and the 94 ℃ of 30s that circulate 35 times, 61 ℃ of 30s, 72 ℃ of 30s then, last 72 ℃ are extended 5min.The PCR reaction product detects with 2% agarose gel electrophoresis.
3.PCR-RFLP diagnostic method is set up
(1) primer sequence
5 '-TGAAAAGAAGAAGGGGGAAG-3 ' (forward is shown in sequence table SEQ ID:4),
5 '-GTAAGCATTGCGGATCTCCA-3 ' (oppositely, shown in sequence table SEQ ID:5)
This primer amplification fragment length 1030bp.
(2) pcr amplification condition
PCR reaction cumulative volume is 20 μ l, and wherein the about 100ng of pig genomic dna contains 1 * buffer (Promega), 1.5mmol/L MgCl 2, the dNTP final concentration is 150 μ nol/L, the primer final concentration is 0.2 μ mol/L, 2U Taq archaeal dna polymerase (Promega).The pcr amplification program is: 94 ℃ of 4min, and the 94 ℃ of 40s that circulate then 35 times, 62 ℃ of 45s, 72 ℃ of 1min, last 72 ℃ are extended 5min.The PCR reaction product detects with 2% agarose gel electrophoresis.
(3) RFLP testing conditions
PCR product endonuclease reaction volume is 15 μ l, 1 * buffer, 1.5 μ l wherein, and PCR product 3~5 μ l, restriction enzyme SphI are 0.5 μ l (5U), use H 2O supplies 15 μ l, and with centrifugal behind the sample mixing, 37 ℃ of water-bath 4h detect enzyme with 2% agarose gel electrophoresis and cut the result, and the record genotype is taken pictures under ultraviolet lamp.
4, mark property association analysis
The test swinery is a commercial Large White group, and 190 DNA samples are used for genotype detection.
5.PCR-SSCP method is set up
(1) primer sequence 5 '-TGCCTTCGGCCAGGATTGAG-3 ' (forward is shown in sequence table SEQ ID:6),
5 '-ACTAGCTGCCGATAATCACC-3 ' (oppositely, shown in sequence table SEQ ID:7)
This primer amplification fragment length 219bp.
(2) pcr amplification condition
PCR reaction cumulative volume is 20 μ l, and wherein the about 100ng of pig genomic dna contains 1 * buffer (Promega), 1.5mmol/L MgCl 2, the dNTP final concentration is 150 μ mol/L, the primer final concentration is 0.3 μ mol/L, 2U Taq archaeal dna polymerase (Promega).The pcr amplification program is: 94 ℃ of 4min, and the 94 ℃ of 30s that circulate then 35 times, 62 ℃ of 30s, 72 ℃ of 30s, last 72 ℃ are extended 5min.The PCR reaction product detects with 2% agarose gel electrophoresis.
(3) SSCP detects the polymorphism of PSME1 gene C 802-G802
The preparation of the neutral polyacrylamide gel of a
The preparation of polyacrylamide gel: 10%, 20cm * 20cm, 1mm approaches glue, and every plate glue needs the 35mL glue approximately.
Distilled water: 22mL
40% glue stock solution: 9mL
10 * tbe buffer liquid: 3.5mL
10%AP solution: 200 μ l
Above solution is mixed in beaker, before facing encapsulating, add 20 μ l TEMED, quicken polyreaction.
The sex change of b.PCR product
Get 4 μ l and in 0.2mL PCR pipe, mix, put 100 ℃ of sex change 8min on the PCR instrument through PCR product and the 6 μ l sex change damping fluids that 2% agarose electrophoresis was verified.Sex change is put ice bath in the frozen water with the PCR pipe after finishing immediately, prevents dna single chain renaturation.
The last sample of c, electrophoresis
Pull out comb after the gel polymerisation, draw 1 * tbe buffer liquid flushing comb hole,, make the easy sedimentation of sample to remove unpolymerized glue with syringe.Assemble electrophoresis equipment, closed slit between glass plate and the electrophoresis chamber, prevent the electrophoretic buffer seepage with 1% agarose gel fluid-tight.Pouring capacity 1 * TBE electrophoretic buffer into, prerunning 10min under the 100V constant voltage in the dashpot up and down.With 50 μ L microsyringes the PCR product of sex change is slowly injected the comb hole, and point is gone up unmodified PCR product in contrast.Electrophoresis power is opened in the last sample back that finishes, and under the 110V-120V constant voltage electrophoresis 12-15 hour, moves to the gel bottom until the blue or green electrophoresis indication of dimethylbenzene band.
D is gel-colored
Electrophoresis finishes, and takes off the glass plate, carefully gel is stripped down from the glass plate, will immerse fixedly 20min of 10% ethanolic soln immediately.Fixedly finish, with the of short duration detergent gel of distilled water (changing water twice, each 1 minute).Then gel is soaked in 0.1% the silver nitrate solution and dyes, the lucifuge 30min that softly vibrates on shaking table.Dyeing finishes the back and gets gel express developed twice (each 10s) with distilled water, and the flush away gel shows residual nitric acid silver solution.Pour the colour developing liquid that contains 3%Na2CO3 and trace formaldehyde in dying the glue box, rock the glue box immediately apace, the black silver particle of avoiding separating out deposits in gel surface.Change fresh colour developing liquid during colour developing liquid colour-darkening immediately.Note to observe the colour developing situation, the purpose band manifests and at once gel is changed over to 3% acetic acid solution after clear, soaks 10min and stops showing.
Effect of the present invention
1, the clone of pig PSME1 full length gene cDNA
3 ' and 5 ' RACE amplified production is special PCR product (as shown in Figure 2) through the demonstration of 1.2% agarose gel electrophoresis detected result.The PCR product is reclaimed the order-checking of purifying rear clone, and sequencing result shows that 3 ' RACE product length is 914bp, and 5 ' RACE product length is 634bp.
These two fragments are spliced with the ASSEMBLY program of GeneTool software, obtained the full-length cDNA of PSME1 gene, length is 1039bp (shown in Figure 3).This section cDNA sequence is carried out homology search in GenBank, (the GenBank number of including: homology NM226263) reaches 90% for this sequence of result for retrieval and people PSME1 gene cDNA, sequential analysis shows that this cDNA sequence has the open reading frame of 750bp (nt 122-872), the protein of being made up of 249 amino acid of encoding.
2, the location of pig PSME1 gene
SCHP clone plate PCR somatotype is the result show, in 19 pig * Chinese hamster somatic cell hybrid clones (1-19 number), 10,11,12, the purpose fragment that occurs the 188bp consistent for No. 16 with the amplification of pig genomic dna positive control, and in 8 pigs * mouse somatic cell hybrid clone (20-27 number), 21,23,25, No. 27 hybrid cell systems all increase and obtain the purpose fragment of 188bp.The PCR somatotype data of above-mentioned actual observation are submitted to HybWeb (http://www.toulouse.inra.fr/lgc/lgc.html/) carry out statistical study to obtain zone location information, the data analysis result is that the PSME1 assignment of genes gene mapping is on No. 7 karyomit(e)s of pig (P=1.000), further the zone location result is SSC7q12-q23 or SSC7 q26 (P=0.4494, P<0.1%).
With IMpRH clone plate PSME1 is accurately located.Statistic analysis result shows the PSME1 assignment of genes gene mapping in SSC7 q12-q23, and with TCRA (TXi Baoshouti α) the gene close linkage on No. 7 karyomit(e)s of pig, the LOD value is 10.58, and the RH map distance is 0.39Ray.
3, the PCR-RFLP diagnostic method is set up
Obtain 1030bp specific amplification fragment with primer amplification pig genomic dna, comprised part exon 5 and part exons 10 sequence and complete intron 6,7,8,9,10 dna sequence dna (seeing Fig. 4 for details).The sequencing results shows at 1 SphI restriction enzyme site (GCATG ↓ C), have the sudden change of T741-C741 at 741 places of 740bp place existence.When 741 places were C, this locus was by B allelotrope control (two fragments of 740bp+290bp), and when 741 places were T, this gene was by A allelotrope control (having only fragment of 1030bp), and these two allelotrope departments form three kinds of frequency of genotypes AA, AB, BB.
4, mark property association analysis
The result shows that the AA genotype has 10 in 190 individualities to pig PSME1 gene SphI-RFLP pleomorphism site genotype detection, and the AB genotype has 62 individualities, and the BB genotype has 118 individualities.Carrying out in the association analysis with the part producing proterties, the proterties of being analyzed is birth weight, weaning weight and the 170 ages in days thickness of backfat when butchering.The simple mean of proterties and standard deviation analytical results are summarized in table 1 between genotype.Association analysis is the result show, the weaning weight of AA and AB genotype pig is utmost point significant difference (P<0.01), AA and BB genotype pig, and the weaning weight of AB type and BB type pig is remarkable difference (the P value is respectively 0.047 and 0.013).
Table 1: the association analysis of different PSME1 gene SphI-RFLP genotype and part producing proterties
Genotype Genotypes Number of individuals N Birth weight Birth weight (kg) Weaning weight Weaning weight (kg) Thickness of backfat Backfat thickness (mm)
Psmel-SphI AA BB AB 10 118 62 1.50±0.16 1.47±0.24 1.59±0.27 11.57±1.51 10.11±1.64 10.66±1.42 11.01±1.40 11.25±1.94 11.17±2.09
P-value AA-AB AA-BB AB-BB 0.30 0.44 0.28 0.008 0.047 0.013 0.32 0.38 0.39
5.PCR-SSCP method is set up
Obtained 219bp specific amplification fragment with primer amplification pig genomic dna, this fragment is carried out PCR-SSCP to be analyzed. the discrepant individuality of electrophoresis banding pattern is carried out different PCR reactions, the electrophoretic repeated experiments of different batches, on behalf of individuality, choose difference repeatably carry out the PCR product directly to check order, two-way order-checking peak figure is compared with the seqMan software of DNAstar5.01, the result shows at 802 places of sequence table SEQ ID No.2, finds variant sites (C/G).By sequencing result as can be known: have two kinds of homozygotes, GG homozygote and CC homozygote and a kind of heterozygote GC type.
Description of drawings
Sequence table SEQ ID NO:1 is the full length cDNA sequence of the present invention's pig weaning weight PSME1 gene of cloning;
Sequence table SEQ ID NO:2 is the dna sequence dna of the present invention's pig weaning weight PSME1 gene of cloning;
Sequence table SEQ ID NO:4 is the primer sequence with PCR-RFLP detection pig weaning weight PSME1 gene pleiomorphism that the present invention clones;
Sequence table SEQ ID NO:5 is the primer sequence with PCR-RFLP detection pig weaning weight PSME1 gene pleiomorphism that the present invention clones.
Sequence table SEQ ID NO:6 is the primer sequence with PCR-SSCP detection pig weaning weight PSME1 gene that the present invention clones;
Sequence table SEQ ID NO:7 is the primer sequence with PCR-SSCP detection pig weaning weight PSME1 gene that the present invention clones.
Fig. 1: be techniqueflow chart of the present invention
Fig. 2: the agarose gel electrophoretogram that is 5 ' and 3 ' RACE.
Agarose gel concentration is 1.2%.1 swimming lane: 3 ' RACE product, length are 914bp; 2 swimming lanes: 5 ' RACE product, length are 634bp; M swimming lane: dna molecular amount mark (100-1000bp ladder)
Fig. 3: be pig PSME1 full length gene cDNA sequence and deduced amino acid.Initiator codon and terminator codon show with adding the surplus matrix, and the sequence of primer shows with square frame, and Poly (A) signal represents with setting-out down, the amino acid of derivation with one-letter symbol write on codon below.
Fig. 4: the genomic dna sequence that is pig PSME1.
Dash area is respectively exon 5,6,7,8,9,10.White space is respectively intron 6,7,8,9,10.5 '-and two conservative Nucleotide (GT/AG) of 3 ' splicing site mark with black matrix, the position of primer shows with square frame.
Embodiment
Embodiment 1
The distribution situation of PCR-RFLP-SphI polymorphism in 3 pig varieties
(1) primer sequence: 5 '-TGAAAAGAAGAAGGGGGAAG-3 ' (forward is shown in sequence table SEQ ID:4);
5 '-GTAAGCATTGCGGATCTCCA-3 ' (oppositely, shown in sequence table SEQ ID:5).
(2) pcr amplification condition: PCR reaction cumulative volume is 20 μ l, and wherein the about 100ng of pig genomic dna contains 1 * buffer (Promega), 1.5mmol/L MgCl 2, the dNTP final concentration is 150 μ mol/L, the primer final concentration is 0.2 μ nol/L, 2U Taq archaeal dna polymerase.Amplification program: 94 ℃ of 4min, the 94 ℃ of 40s that circulate then 35 times, 62 ℃ of 45s, 72 ℃ of 1min, last 72 ℃ are extended 5min.The PCR reaction product detects with 2% agarose gel electrophoresis.
(3) RFLP testing conditions: the endonuclease reaction volume is 15 μ l, 1 * buffer, 1.5 μ l wherein, and PCR product 3~5 μ l, restriction enzyme SphI are 0.5 μ l (5U), use H 2O supplies 15 μ l, and 37 ℃ of water-bath 4h detect enzyme with 2% agarose gel electrophoresis and cut the result.
The distribution of table 2PCR-RFLP-SphI polymorphism in 3 pig varieties
Kind Number of individuals Genotype Gene frequency
AA AB BB A B
Du Luoke hides the pig painted face in Beijing opera 21 25 25 0 1 0 0 14 6 21 10 19 0 0.32 0.12 1 0.68 0.88
Showing according to the genotype of table 2 and the result of gene frequency, in 3 pig varieties that detected, all is that B allelotrope is preponderated.
Embodiment 2:
We use the PCR-RFLP diagnostic method of setting up, and 190 DNA samples of a Large White group are carried out the genotype detection of PSME1-RFLE-SphI.
Detected result shows that the AA genotype has 10 in 190 individualities, and the AB genotype has 62 individualities, and the BB genotype has 118 individualities.With the association analysis of weaning weight in, the simple mean of proterties and standard deviation analytical results are summarized in table 4 between genotype.Association analysis is the result show, the weaning weight of AA and AB genotype pig is utmost point significant difference (P<0.01), AA and BB genotype pig, and the weaning weight of AB type and BB type pig is remarkable difference (P<0.05).
Table 3: the association analysis of different PSME1 gene SphI-RFLP genotype and weaning weight
Genotype Genotypes Number of individuals N Weaning weight Weaning weight (kg)
Psme1-SphI AA BB AB 10 118 62 11.57±1.51 10.11±1.64 10.66±1.42
P-value AA-AB AA-BB AB-BB 0.008 0.047 0.013
Embodiment 3:
Detect genotype and the heavy relation of weaned piglet of 108 Tongcheng pigs with foregoing gene diagnosis method.The relation that genotype of Tongcheng pig and weaned piglet are heavy sees Table 5.
The relation that genotype of table 4 Tongcheng pig and weaned piglet are heavy
Genotype Number of individuals Weaning weight (kg)
Psmel-SphI AA BB AB 2 82 24 10.69±1.35 9.36±1.58 10.21±1.40
P-value BB-AB 0.032
In this example, owing to only detect the pig of 2 routine AA types, so when doing association analysis, we ignore the AA type, only to the wean of the BB-AB type T check of having reformed.The result shows that the weaning weight of AB and BB type pig is remarkable difference, is consistent with the result who draws previously.
Embodiment 4:
The PCR-RFLP-SphI polymorphism is on the Xiao Mei mountain, the distribution situation of Da Bai and peaceful pig
The distribution of table 5PCR-RFLP-SphI polymorphism in 3 pig varieties
Kind Number of individuals Genotype Gene frequency
AA AB BB A B
The peaceful pig of the white Min pig of Mei Shanda 32 12 42 47 8 0 13 17 21 3 19 23 3 9 10 7 0.5781 0.125 0.5357 0.6064 0.4219 0.875 0.4643 0.3936
The Xiao Mei mountain, Min pig and peaceful pig all are Chinese native pig breeds, and they all are that A allelotrope is preponderated, and Large White is European pig kind, and B allelotrope is preponderated.
Embodiment 5:
PCR-SSCP detects the polymorphism of the C802-G802 sudden change of pig weaning weight PSME1 gene
Table 6PCR-SSCP detects the polymorphism of the C802-G802 sudden change of pig weaning weight PSME1 gene
Kind Number of individuals Genotype Gene frequency
CC CG GG C G
The white Min pig painted face in Beijing opera of Mei Shanda is hidden the peaceful pig of pig 22 12 42 22 36 25 5 0 8 0 7 17 13 0 21 4 19 7 4 12 13 18 10 1 0.5228 0 0.4405 0.0909 0.4583 0.82 0.4772 1 0.5595 0.9091 0.5417 0.18
In above-mentioned 6 swinerys with regard to above-mentioned variant sites according to gene frequency through the electrophoretic band pattern statistic mass of the difference of sequence verification representative.This variant sites of T check explanation exists variation in swinery.
Sequence table (pig weaning weight) SEQUENCE LISTING
<110〉Hua Zhong Agriculture University
<120〉pig weaning weight PSME1 gene and preparation method thereof
<130>
<141>2003-08-26
<150>02139235.8
<151>2002-11-01
<160>7
<170>PatentIn version 3.1
<210>1
<211>1039
<212>DNA
<213〉pig (Sus scrofa)
<220>
<221>gene
<222>(1)..(1039)
<223>
<220>
<221>3’UTR
<222>(872)..(1039)
<223>
<220>
<221>polyA_signal
<222>(989)..(994)
<223>
<220>
<221>CDS
<222>(122)..(871)
<223>
<220>
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<222>(1)..(121)
<223>
<400>1
acgcgggaag cagtggtatc aacgcagagt acgcgggggc ggggagcgag cgctgctttc 60
gctttccctt ccctgtgccc actcctcgct ccgcgtgtga cgctaggccc cctccccggc 120
c atg gcc gcg ctc agg gtc cag ccc gaa gcc caa gcc aag gtc gat gtg 169
Met Ala Ala Leu Arg Val Gln Pro Glu Ala Gln Ala Lys Val Asp Val
1 5 10 15
ttc cgt gaa gac ctg tgt acc aag aca gag aac cta ctc ggg agc tat 217
Phe Arg Glu Asp Leu Cys Thr Lys Thr Glu Ash Leu Leu Gly Ser Tyr
20 25 30
ttc ccc aag aag att tct gag ttg gat gca ttt tta aag gag cca gct 265
Phe Pro Lys Lys Ile Ser Glu Leu Asp Ala Phe Leu Lys Glu Pro Ala
35 40 45
ctc aat gaa gcc aac ctg agc aat ctg aag gcc cca ttg gac att cca 313
Leu Asn Glu Ala Asn Leu Ser Asn Leu Lys Ala Pro Leu Asp Ile Pro
50 55 60
gtg cct gat ccg gtc aag gag aaa gag aag gag gaa agg aag aaa cag 361
Val Pro Asp Pro Val Lys Glu Lys Glu Lys Glu Glu Arg Lys Lys Gln
65 70 75 80
cag gag aag gaa gac aaa gat gaa aag aag aag ggg gaa gat gag gat 409
Gln Glu Lys Glu Asp Lys Asp Glu Lys Lys Lys Gly Glu Asp Glu Asp
85 90 95
aaa ggt cct ccc tgt ggc cca gtg aac tgc aat gag aag atc gtg gtc 457
Lys Gly Pro Pro Cys Gly Pro Val Asn Cys Asn Glu Lys Ile Val Val
100 105 110
ctt ctg cag cgc ctg aag cot gag atc aag gat gtc att gag cag ctc 505
Leu Leu Gln Arg Leu Lys Pro Glu Ile Lys Asp Val Ile Glu Gln Leu
115 120 125
aac ctg gtt acc acc tgg ttg cag ctg cag ata cct cgg att gaa gac 553
Asn Leu Val Thr Thr Trp Leu Gln Leu Gln Ile Pro Arg Ile Glu Asp
130 135 140
ggt att aat ttt gga gtg gct gtc cag gag aag gtt ttc gag ctg atg 601
Gly Ile Asn Phe Gly Val Ala Val Gln Glu Lys Val Phe Glu Leu Met
145 150 155 160
acc gcc ctt cac acc aaa ctg gaa ggc ttc cac act caa atc tcc aag 649
Thr Ala Leu His Thr Lys Leu Glu Gly Phe His Thr Gln Ile Ser Lys
165 170 175
tat ttc tct gag cgg ggc gat gct gtg gcc aaa gca gct aag cag cct 697
Tyr Phe Ser Glu Arg Gly Asp Ala Val Ala Lys Ala Ala Lys Gln Pro
180 185 190
cac gtg ggt gat tat cgg cag cta gtg cac gag ctg gat gag gca gag 745
His Val Gly Asp Tyr Arg Gln Leu Val His Glu Leu Asp Glu Ala Glu
195 200 205
tac cgg gat atc cgg ctg atg gtc atg gag atc ctc aat gct tac gct 793
Tyr Arg Asp Ile Arg Leu Met Val Met Glu Ile Leu Asn Ala Tyr Ala
210 215 220
gtg tta tat ggc atc atc ctg aag aac ttt gag aaa ctc aag aag cct 841
Val Leu Tyr Gly Ile Ile Leu Lys Asn Phe Glu Lys Leu Lys Lys Pro
225 230 235 240
agg gga gaa aca aaa ggc atg atc tat tga gagcctcccc tccttctgtg 891
Arg Gly Glu Thr Lys Gly Met Ile Tyr
245
atgggtccag cagaccttcc tgacttttac tggggactcc aggctttccc caccttctgc 951
ctgttgaggt ttctccctca ccttgcctct caggcacaat aaatatagtc gtaccgttaa 1011
aaaaaagaaa aaaaaaaaaa aaaaaagt 1039
<210>2
<211>249
<212>PRT
<213〉pig (Sus scrofa)
<400>2
Met Ala Ala Leu Arg Val Gln Pro Glu Ala Gln Ala Lys Val Asp Val
1 5 10 15
Phe Arg Glu Asp Leu Cys Thr Lys Thr Glu Asn Leu Leu Gly Ser Tyr
20 25 30
Phe Pro Lys Lys Ile Ser Glu Leu Asp Ala Phe Leu Lys Glu Pro Ala
35 40 45
Leu Asn Glu Ala Asn Leu Ser Asn Leu Lys Ala Pro Leu Asp Ile Pro
50 55 60
Val Pro Asp Pro Val Lys Glu Lys Glu Lys Glu Glu Arg Lys Lys Gln
65 70 75 80
Gln Glu Lys Glu Asp Lys Asp Glu Lys Lys Lys Gly Glu Asp Glu Asp
85 90 95
Lys Gly Pro Pro Cys Gly Pro Val Asn Cys Asn Glu Lys Ile Val Val
100 105 110
Leu Leu Gln Arg Leu Lys Pro Glu Ile Lys Asp Val Ile Glu Gln Leu
115 120 125
Asn Leu Val Thr Thr Trp Leu Gln Leu Gln Ile Pro Arg Ile Glu Asp
130 135 140
Gly Ile Asn Phe Gly Val Ala Val Gln Glu Lys Val Phe Glu Leu Met
145 150 155 160
Thr Ala Leu His Thr Lys Leu Glu Gly Phe His Thr Gln Ile Ser Lys
165 170 175
Tyr Phe Ser Glu Arg Gly Asp Ala Val Ala Lys Ala Ala Lys Gln Pro
180 185 190
His Val Gly Asp Tyr Arg Gln Leu Val His Glu Leu Asp Glu Ala Glu
195 200 205
Tyr Arg Asp Ile Arg Leu Met Val Met Glu Ile Leu Asn Ala Tyr Ala
210 215 220
Val Leu Tyr Gly Ile Ile Leu Lys Asn Phe Glu Lys Leu Lys Lys Pro
225 230 235 240
Arg Gly Glu Thr Lys Gly Met Ile Tyr
245
<210>3
<211>1030
<212>DNA
<213〉pig (Sus scrofa)
<220>
<221>primer_bind
<222>(1)..(20)
<223>
<220>
<221>primer_bind
<222>(1011)..(1030)
<223>
<220>
<221>exon
<222>(944)..(1030)
<223>
<220>
<221>exon
<222>(813)..(867)
<223>
<220>
<221>exon
<222>(651)..(718)
<223>
<220>
<221>exon
<222>(497)..(565)
<223>
<220>
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<222>(150)..(257)
<223>
<220>
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<222>(1)..(32)
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<222>(741)..(741)
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tga aaa gaa gaa ggg gga aga tga gga taa ag gtatcattgt ggtggaaggg 52
Lys Glu Glu Gly Gly Arg Gly Arg
1 5
atttgcatct tacctcccag gagttccttc ctaaggatgc ctcttccctg cccctcacag 112
ccccagccat gtgactgacc cagtgtccac ctcttag g tcc tcc ctg tgg ccc 165
Set Ser Leu Trp Pro
10
agt gaa ctg caa tga gaa gat cgt ggt cct tct gca gcg cct gaa gcc 213
Ser Glu Leu Gln Glu Asp Arg Gly Pro Ser Ala Ala Pro Glu Ala
15 20 25
tga gat caa gga tgt cat tga gca gct caa tct ggt gag ccc tc 257
Asp Gln Gly Cys His Ala Ala Gln Ser Gly Glu Pro Ser
30 35 40
ctcgttctac tccctgattt cagatcaaac cctttgtcct cctttgtcca tgccagttag 317
ggcatggcac ctgccagctc tttacaggcg agggcacaac aagtgaagcc agaataccct 377
ggggctccga acagacctga catacttctc cccactgtgg tcagagaaac aaagaaggac 437
aggaacctgg gatttggggc ggggactaat ggggctttga tgccattcct tcctcccag 496
g tta cca cct ggt tgc agc tgc aga tac ctc gga ttg aag acg gta ata 545
Leu Pro Pro Gly Cys Ser Cys Arg Tyr Leu Gly Leu Lys Thr Val Ile
45 50 55
att ttg gag tgg ctg tcc ag gtgagagtgc taccccactc tcctgccttc 595
Ile Leu Glu Trp Leu Ser Arg
60
cttctctctc cagtccatgc tgtcttccac ttcccccctt gctttctttc cccag g 651
aga agg ttt tcg agc tga tga ccg ccc ttc aca cca aac tgg aag gct 699
Arg Arg Phe Ser Ser Pro Pro Phe Thr Pro Asn Trp Lys Ala
65 70 75
tcc aca ctc aaa tct cca a gtgagtgact tgcacccgca tgctcctgcc 748
Ser Thr Leu Lys Ser Pro
80
ttcggccagg attgaggcca gggctccctc ctcctcccac tccacaccct tctccttccc 808
acag gt att tct ctg agc ggg gcg atg ctg tgg cca aag cag cta agc 856
Ser Ile Ser Leu Ser Gly Ala Met Leu Trp Pro Lys Gln Leu Ser
90 95
agc ctcacg tg gtaggtgagg cctaggtcag ggtgcatggg aggagggaca 907
Ser Leu Thr Trp
100
cctttgaagt cagggcgtga cccgtgtctc ccacag g gtg att atc ggc agc tag 962
Val Ile Ile Gly Ser
105
tgc acg agc tgg atg agg cag agt acc ggg ata tcc ggc tga tgg tca 1010
Cys Thr Ser Trp Met Arg Gln Ser Thr Gly Ile Ser Gly Trp Ser
110 115 120
tgg aga tcc gca atg ctt ac 1030
Trp Arg Ser Ala Met Leu
125
<210>4
<211>20
<212>DNA
<213〉pig (Sus scrofa)
<220>
<221>primer_bind
<222>(1)..(20)
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tgaaaagaag aagggggaag 20
<210>5
<211>20
<212>DNA
<213〉pig (Sus scrofa)
<220>
<221>primer_bind
<222>(1)..(20)
<223>
<400>5
gtaagcattg cggatctcca 20
<210>6
<211>20
<212>DNA
<213〉pig (Sus scrofa)
<220>
<221>primer_bind
<222>(1)..(20)
<223>
<400>6
tgccttcggc caggattgag 20
<210>7
<211>20
<212>DNA
<213〉pig (Sus scrofa)
<220>
<221>primer_bind
<222>(1)..(20)
<223>
<400>7
actagctgcc gataatcacc 20

Claims (10)

1, pig weaning weight PSME1 gene, its full length cDNA sequence is as described in the sequence table SEQ ID NO:1.
2, gene according to claim 1, its genomic dna sequence is as described in the sequence table SEQ ID NO:3.
, gene according to claim 1, it is characterized in that: the PSME1 gene cDNA total order that is obtained is classified 1039bp as, wherein comprises the open reading frame of 750bp, the 5 ' non-translational region of 121bp and the 3 ' non-translational region of 168bp.
4, dna sequence dna according to claim 2 is characterized in that: there is a base mutation C741-T741 at the 741st bit base place of sequence table SEQ ID NO:3, causes the SphI-RFLP polymorphism.
5, dna sequence dna according to claim 2 is characterized in that: there is a base mutation C802-G802 at the 802nd bit base place of sequence table SEQ ID NO:3, does not cause the variation of restriction enzyme site.
6. the described gene of claim 2, the dna sequence dna of forward and reverse primer that detects the 741 base mutation C741-T741 of bit base place is as described in sequence table SEQ ID NO:4 and the sequence table SEQ ID NO:5.
7. the described gene of claim 2, the dna sequence dna of forward and reverse primer that detects the 802 base mutation C802-G802 of bit base place is as described in sequence table SEQ ID NO:6 and the sequence table SEQ ID NO:7.
8, the method for preparation gene order as claimed in claim 1 or 2, its feature is according to following steps:
(1) personnel selection PSME1 gene cDNA is the information probe, does the homologous sequence screening, obtains the expressed sequence tag of homology more than 90%; Then EST is spliced; Design 5 ' and 3 ' RACE primer; Extract the pig spleen total tissue RNA and do the cDNA first chain reverse transcription; The purifying of the pcr amplification of RACE and RACE product clone and order-checking, obtain sequence as sequence table SEQ ID NO:1 by sequential analysis;
(2) extracting DNA from the pig blood genome, is template design primer with pig PSME1 gene cDNA sequence, and pcr amplification, PCR product purification and cloning and sequencing obtain the nucleotide sequence shown in sequence table SEQ ID NO:3.
9, use the polymorphism that the PCR-RFLP method detects pig PSME1 gene C 741-T741.
10, use the polymorphism that the PCR-SSCP method detects pig PSME1 gene C 802-G802.
CNB031562418A 2002-11-01 2003-09-02 Heavy PSME1 gene for pig to pass breast, and its prepn. method Expired - Fee Related CN1263851C (en)

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