CN1364923A - New rice leaf expression sequence labels and biochip - Google Patents
New rice leaf expression sequence labels and biochip Download PDFInfo
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Abstract
The present invention provides rice leaf expression sequence labels and the constituted biochip. The cDNA sequence includes those shown in SEQ ID No.1 to SEQ ID No.50. Expression sequence label technology is used to sequence DNA in constituted rice albumen cDNA library, and the obtained expression sequence labels are used to obtain 50 new expression sequence labels capable of being produced into combined biochip through eliminating redundance, searching, sorting and enriching. The biochip may be used in gene cloning of important crop characteristic, early prediction of heterosis, safety detection of transgenic agricultural product, screening of new herbicide and pesticide, medicine research, disease diagnosis, etc.
Description
Technical field
The present invention relates to biological technical field, relate in particular to new rice leaf expression sequence label of a class and biochip thereof.
Background technology
But the sequence of transcriptional expression in the biological gene group (being gene) only accounts for the 3-5% of total sequence, and this part sequence is measured, and will directly cause the discovery of new gene, and obtains information the closest with the industrialization relation in the genome.The eighties in 20th century; the appearance of high-throughout automatic sequencing; make from plasmid complementary DNA (cDNA) (Complementary DNA is called for short cDNA) the many cDNA of library picked at random and clone and determine to become possibility from the dna sequence dna of a hundreds of base at non-carrier two ends.These short dna sequence dnas are called " expressed sequence tag " (Expressed Sequence Tags is called for short ESTs).The notion of expressed sequence tag the earliest by Adams etc. put forward in 1992 (Nature, 355,642-644).Sikela in 1992 and Matsubara (Sikela, et al.Nucleic Acids Res.19,1837-1843; Matsubara, et al.Nature Genetics, 2,173-179), the research strategy of extensive complementary DNA (cDNA) (cDNA) order-checking is proposed at obtaining pressing for of a large amount of messenger RNA(mRNA) (mRNA) sequence.Venter has founded extensive expressed sequence tagging method subsequently.Its essential characteristic is exactly from being carrier with the plasmid, the purpose that structure is finished is organized complementary DNA (cDNA) (Complementary DNA, abbreviation cDNA) in the library, select many cDNA clones at random, utilize the universal primer that carries on the plasmid that DNA sequence is carried out taking turns in the cDNA two ends and measure, the non-carrier from the hundreds of base of 3 ' end or 5 ' end that is obtained is lacked thymus nucleic acid (DNA) sequence.In brief, expressed sequence tag is the short DNA sequence from expressing gene fragment 3 ' end or 5 ' end, represents the part of an expressing gene to transcribe fragment.
Along with the needs and the expressed sequence tag inherent characteristics of development of biology and life science development, in recent years, people had invented biochip.The essence of biochip (Biochips) be exactly on the little substrate of area in an orderly manner dot matrix arranged a series of addressable biological identification molecule in certain position ground (R.J.Lipshutz et al. that are fixed in, Bio Techniques 19 (1995), 442-447; S.P.Fodor et al., Nature364 (1993), 555-556; S.P.Fodor et al., Science 251 (1991), 767-773; A.C.Pease et al., Proc.Natl.Acad.Sci.USA 91 (1994), 5022-5026).Because initial biochip mainly is to be used for determined dna sequence, gene expression profile identify (D.J.Lockhart et al., Nature Biotechnol.14 (1996), 1675-1680) and the detection and analysis (the Feriotto G of gene mutation body, et al., Hum Mutat1999; 13:390-400; Hacia J.G.et al., Nat Genet 1999; 21 (suppl 1): 42-7; Hacia JG, etal., Nat Genet 1999; 22:164-7, Nilsson P, et al., Biotechniques 1999; 26:308-16), so be called DNA chip or gene chip again.At present, this technology is extending to non-nucleic acid fields such as immune response, receptors bind, so biochip has exceeded original scope.Nowadays biochip mainly comprises cDNA microarray, oligonucleotide microarray, moving electric microarray and protein chip etc.October nineteen ninety-five Patrick Brown and he the colleague (Bio Techniques, 19 (1995), 442-447) the cDNA microarray technology has been proposed, (Science 1995 for M.Schena; 270 (5235), 467-470) and D.Shalon (Genome Research 1996; 6 (7), 639-645) grade has been made the cDNA array first, and this technology has obtained development at full speed subsequently.The utilization biochip technology carries out the chip utilization hybridization technique and the scanning technique that obtain chip processing, valid data extraction, analyzes and report biochip, can obtain corresponding gene expression profile (Gene expression profiling).At present the DNA chip is employed in a lot of fields with relative characteristics such as simple because of having strong property, handiness, susceptibility, as: determined dna sequence, gene pleiomorphism detect, discovery, vaccine and drug research (M.J.Cunningham et al., the J.Pharmacol.and Toxicol.Methods 2000 of new gene; 44,291-300), (PNAS 2000 for P.M.Schenk, et al. for the resistance research of plant; The fluctuation activity of gene etc. in 97:11655-11660), organic growth, the Harmony research of regulating the gene of cell function, the detection different development stage different tissues.The gene expression data of analyzing gene group mass-producing; observe finally causing the globality of pair cell differentiation; (the Charlie C.Xiang such as genome molecular linkage map that relate to cell proliferation, necrocytosis, energy metabolism, intercellular and intracellular signal transduction, immunoreactive generation, cell migration; et al.; Vaccine; 2001,22 (2002), 22-30).
Carry out gene expression spectrum analysis by biochip to expressed sequence tag and formation thereof, help to find and the newcomer of clone gene family, assignment of genes gene mapping clone, make, cause the mutational site of inherited disease as the chromosomal assignment of genes gene mapping of sequence tagged site (Sequence-TaggedSites is called for short STSs) and gene mapping evaluation, analyzing gene in different tissues expression specificity and set up invention and the pair cell and the organic holistic approach etc. of DNA physical map, new drug.Just because of expressed sequence tag has so superiority, so expressed sequence tag order-checking has become the focus of many genome research mechanism.
Summary of the invention
The object of the invention provides new rice leaf expression sequence label of a class and biochip thereof.
The sequence of the isolated paddy endosperm cDNA of the present invention expressed sequence tag has the sequence shown in SEQ ID No.1～SEQ ID No.50.
Said cDNA sequence has one or several the combination in the sequence shown in SEQ ID No.1～SEQ ID No.50.The cDNA sequence comprises the complementary sequence or the homologous sequence of every sequence in the sequence shown in SEQ ID No.1～SEQ ID No.50.The cDNA sequence comprises sequence or its complementary sequence that 8～100 continuous nucleotides in every sequence shown in SEQ ID No.1～SEQ ID No.50 are probe.
The biochip that above-mentioned sequence label is formed is the nucleic acid molecule that is combined with sequence, homologous sequence or its complementary sequence shown in SEQ ID No.1～SEQ IDNo.50 on carrier.Said carrier is solid phase carrier or liquid phase carrier.Solid phase carrier is slide, silicon chip, nylon membrane, nitrocellulose membrane, gel.Said nucleic acid molecule is thymus nucleic acid, Yeast Nucleic Acid and poly oligonucleotide.
A kind of biochip of expressed sequence tag is research and the detection that is used for biological function.Said biology comprises animal, plant and their cell, histoorgan and system thereof; The research of said biological function comprises the mechanism of screening, animal and plant growth and growth of the generation of resistance, plant breeding and the new variety of plant of medicine, vaccine, plant, heterotic early prediction, new herbicides and novel agrochemical and the toxicology of medicine; The detection of said biological function comprises the evaluation of the detection of functional assessment, pathogenic agent of security detection, the food composition of transgenic plant and diagnosis, living species, comprises animals and plants and microorganism.
Advantage of the present invention is:
1. make the expressed sequence tag chip with the new expressed sequence tag that obtains and have many commercial values and scientific research value: (1) uses the gene that this expressed sequence tag chip can be used for the Main Agronomic Characters of clone plant, as drought-resistant, anti-saline and alkaline, pest-resistant evil and the isogenic clone of anti-low temperature.(2) use this biochip and also can be used for the hybrid vigour of farm crop is carried out early prediction, filter out best advantage cross-fertilize seed.(3) use this biochip and also can be used for transgene agricultural product is carried out commodity inspection, to check the security of edible transgenic product.(4) use toxicity and the side effect that this biochip also can be used for searching medicine, carry out toxicologic study, be beneficial to screening new herbicides and novel agrochemical.(5) this biochip can be used for the generation of vegeto-animal breeding and new variety of plant.(6) this biochip also can be used for studying on the whole the expression of whole messenger RNA(mRNA) (mRNA), and this globality research to the organism generegulation has important scientific research and practical advice is worth.(7) use this biochip and can also use intercellular and intracellular signal transduction in the mutant research plant, provide the important theory foundation for finding gene function and physiological metabolism approach in the plant.(8) this biochip can be as a kind of commodity, be widely used in clinical, in pharmaceutical industries and the actual production.2. can utilize these new expressed sequence tag to draw gene mapping.If an expressed sequence tag only occurs once in genome, it can be as sequence tagged site (STS) so.Scheme or transcription map (expression or transcript maps) expressing by the physical map that expressed sequence tag makes up.Utilize expressed sequence tag to carry out gene map and make, can accelerate the making of sequence tagged site and the chromosomal localization of new gene.3. the expressed sequence tag sequence can be used as gene-specific probe, and the research that tissue-specific gene is expressed has important effect.4. these new expressed sequence tag have been enriched the expressed sequence tag database, and can maximally utilise disclosed expressed sequence tag database information, the cycle that shortens the new total length complementary DNA (cDNA) of clone greatly also can reduce clone's cost, accelerates the weak gene clone progress of bioinformation accumulation of paddy rice.5. expressed sequence tag also can be carried out the genetic evolution relationship analysis of new gene.Expressed sequence tag can relatively can obtain the conserved sequence fragment by different sequences to all vegeto-animal genes as a kind of database, thereby obtains the genetic evolution collection of illustrative plates of gene.
Embodiment
Embodiment 1
The structure in cDNA library
Carry out according to the flow process of Gubler and Hoffman (1983) and the directed cloning strategy described with Dorssers and Postmes (1987).
One, the extraction of total RNA
Adopted the method for Chomezynski and Sacchi (1988) to prepare total RNA and be poly (A)
+RNA carries out oligomerization dT Mierocrystalline cellulose chromatography (Sambrook et al., 1989).
Water intaking rice endosperm ,-20 ℃ of preservations are standby.Take out the 100mg tissue, add the 1ml solution D and (contain the 4M guanidinium isothiocyanate, 25mM Trisodium Citrate (pH7.0), 5% sarcosyl (Sarcosyl), 0.1M beta-mercaptoethanol), to organize abundant homogenate, homogenate is changed in the 10ml centrifuge tube, add the sodium acetate (pH4.0) of 0.1ml 2M again, the water-saturated phenol of 1ml and chloroform/primary isoamyl alcohol of 0.2ml (49: 1) mixture, fully behind the concussion mixing, left standstill on ice again 15 minutes.Sample 4 ℃ centrifugal (10000g) 20 minutes is drawn the upper strata water, with equal-volume Virahol mixing, put-20 ℃ freezing at least 1 hour.4 ℃ of centrifugal (10000g) 20 minutes collecting precipitations also are dissolved in the 0.3ml solution D, add 0.03ml 2M sodium acetate and 0.3ml Virahol, mixing, put-20 ℃ freezing 1 hour, 4 ℃ of centrifugal (10000g) 20 minutes collecting precipitations also are dissolved in 0.3ml coke diethyl phthalate (DEPC) treated water, add 0.03ml sodium acetate and 0.75ml ethanol, mixing, put-20 ℃ freezing 1 hour, 4 ℃ of centrifugal (10000g) 20 minutes collecting precipitations, with 75% washing with alcohol RNA precipitation, after the seasoning RNA is dissolved in the DEPC treated water, it is standby that branch is installed on-70 ℃ of preservations.
Two, band poly (A)
+The separation of RNA
(1) the aqua sterilisa flushing column volume with 3 times of column volumes is disposable oligo (dT)-Mierocrystalline cellulose chromatography post post bed of 0.5～1.0ml.
(2) with 1 * chromatography column sample loading buffer (20mmol/L TrisHCl (pH7.6), 0.5mol/LNaCl, 1mmol/L EDTA (pH8.0), 0.1% sarcosyl) flushing post bed of sterilization until the pH of effusive liquid value less than 8.0.
(3) dissolve RNA with aqua sterilisa, make it be cooled to room temperature rapidly after 5 minutes, add isopyknic 2 * chromatography column sample loading buffer in 65 ℃ of incubations, last sample, collect elutant with the test tube of sterilization immediately, use 1 * chromatography column sample loading buffer of 1 times of column volume again, continue to collect elutant.
(4) complete soln of collecting is placed 65 ℃ of incubations 5 minutes, go up sample again, and collect effluent liquid.
(5) wash post with 1 * chromatography column sample loading buffer of 5～10 times of column volumes, the fraction collection elutant, every part of 1ml, and measure the OD value.
(6) with elution buffer (10mmol/LTrisHCl (pH7.6), 1mmol/L EDTA (pH8.0,0.05%SDS)) the wash-out poly (A) of the no RNA enzyme of the sterilization of 2～3 times of column volumes
+RNA is with 1/3～1/2 column volume fraction collection elutriant.
(7) measure the OD value of collecting liquid.
(8) adding 3mol/L sodium acetate (pH5.2) to final concentration in poly (A)+RNA solution is 0.3mol/L and mixing.The ice ethanol that adds 2.5 times of volumes, mixing ice bath at least 30 minutes.
(9) 4 ℃ of 10000g reclaimed poly (A)+RNA in centrifugal 15 minutes, and careful abandoning supernatant is used 70% ethanol sedimentation, in centrifugal a moment, dries in the air.
(10) with the heavy molten RNA of less water, measure the OD value.
(11) with poly (A)
+RNA solution places polypropylene centrifuge tube, adds 3 times of volume ethanol, and mixing is standby in-70 ℃ of preservations.
Three, the preparation of carrier DNA
Charon BS phage DNA uses calf intestinal alkaline phosphatase (CIP) to handle with HindIII and EcoRI digestion with restriction enzyme several hrs subsequently.0.5MEDTA with 1/10 volume made the Phosphoric acid esterase inactivation in 45 minutes at 65 ℃ of incubations.Use the phenol extracting and purifying DNA, use ethanol sedimentation then.Check the quality (Sambrook et al., 1989) of phage with the growth of background plaque.
Four, the preparation of cDNA
Synthesizing of (1) first chain
With 2.5～5.0 μ g poly (A)
+RNA and 2.5 μ g oligo (dT) (12～18) put into the 0.5mleppendorf pipe.Adding sterilized water to final volume is 20 μ l.With test tube put into 90 ℃ 2～3 minutes, and be placed on cooled on ice fast.Add reagent according to following order: 11 μ l, first chain buffer (5 *) (0.25MTris-Cl (pH8.3, room temperature), 375mMKCl, 15mMMgCl2,50mM dithiothreitol (DTT) (DTT), 0.5mg/ml BSA (nuclease free)), 2.75 μ l dNTP mixtures (every kind of 10mM), 1.5 μ l water and 2.5 μ l MMLV ThermoScript II (200U/ μ l).Take out 5 μ l put into another eppendorf pipe (pipe contain 1～2 μ Ci[α-
32P] dCTP), as test reaction.First chain and test reaction pipe add 1 μ l 0.5M EDTA and 44 μ l TE (pH8.0) (10mMTris-Cl (pH8.0), 1mM EDTA) then in 37 ℃ of incubations 2 hours testing tube, be stored at-20 ℃ and use in order to analyzing.The first chain synthesis reaction pipe is placed on ice.
Synthesizing of (2) second chains
Then add 50 μ l, the first chain reaction mixture: 80 μ l, the second chain buffer (5 *) (0.125MTris-Cl (pH 7.5), 0.5M KCl2,25mM MgCl2,25mM DTT, 0.5mg/ml BSA), 7.5 μ l dNTP mixtures (every kind of 10mM), 250 μ l water, 10 μ l Escherichia coli archaeal dna polymerases (10U/ μ l) and 1.75 μ l E.coli RNA enzyme H (2U/ μ l).Take out 40 μ l put into another eppendorf pipe (pipe contain 5 μ Ci[α-
32P] dCTP), as the second chain synthetic test reaction.15 ℃ of incubations of two test tubes 4～5 hours add 2 μ l 0.5M EDTA and 8 μ l TE (pH8.0) toward testing tube then, are stored at-20 ℃ in order to further analyzing usefulness.Add and also use phenol/chloroform (1: 1) and chloroform/primary isoamyl alcohol (24: 1) extracting in 10 μ l 0.5M EDTA to the second chain reaction pipes, add 0.1 volume ammonium acetate (final concentration is 3M, (pH5.2)) and 2.5 volume of ethanol deposit D NA.-20 ℃ of store overnight.
(3) produce flat terminal cDNA
Double-stranded cDNA is centrifugal, and the washing with alcohol with 70% is also dry.Precipitate with 42.5 μ l water and 5 μ l T4DNA polysaccharase buffer (10 *) (0.67M Tris-Cl (pH8.7, room temperature), 67mM MgCl2, the 100mM mercaptoethanol, 166mM (NH4) 2SO4,67 μ M EDTA), 1 μ l dNTP mixed solution (every kind of 10mM), 0.5 μ l BSA (20 μ g/ μ l) and 1 μ l T4 archaeal dna polymerase.Be reflected at 37 ℃ and carried out 30 minutes, add 150ml TE (pH8.0) then, reaction mixture is used phenol/chloroform (1: 1) and each extracting of chloroform/primary isoamyl alcohol (24: 1) once.CDNA precipitates cDNA with 0.1 volume ammonium acetate (final concentration is 3M (pH5.2)) and 2.5 volume of ethanol, and placement was placed 1～2 hour in 30 minutes or-70 ℃ on dry ice then, and is centrifugal again.
(4) methylate
The little centrifugal collection of cDNA is washed once with 70% ethanol, and vacuum-drying is with the water dissolution of 20 μ l.The AluI methylase buffer (10 *) (0.5M Tris-Cl (pH7.5), 0.1M EDTA, the 50mM mercaptoethanol that add 2.5 μ l.), 1 μ l S-adenosylmethionine (2.5mM, fresh preparation) and 1.2 μ l AluI methylases (5U/ μ l).37 ℃ of incubations 60 minutes.Add 60 μ l water, 8.75 μ l 1M Tris-Cl (pH8.0), 2 μ l 5M NaCl, 2.5 μ l 2.5mM S-adenosylmethionines and 1.5 μ l EcoRI methylases (40U/ μ l) and continued incubation 1～2 hour.CDNA uses phenol/chloroform (1: 1) and each extracting of chloroform/primary isoamyl alcohol (24: 1) once then, adds 0.1 volume ammonium acetate (final concentration is 3M (pH5.2)) and 2.5 volume of ethanol precipitation.
(5) linker connection and HindIII and EcoRI digestion
With the cDNA resolution of precipitate in 6 μ l water.Add 0.5～2 μ g activated oligonucleotide pGCTTGAATTCAAGC and sterilized water and regulate final volume to 10 μ l.Adding 1.2 μ l connection buffer (10 *) and 0.8 μ l T4 dna ligase is incubated overnight for 15 ℃.65 ℃ of heating made the ligase enzyme inactivation in 15 minutes, used restriction enzyme HindIII and EcoRI digested cdna then, used ethanol sedimentation, were dissolved among the TE (pH8.0) of 20 μ l.
(6) remove linker and the cDNAs cut that does not connect
With 1% low-melting agarose gel electrophoresis the linker and the cDNAs cut that do not connect are removed from cDNAs.Downcut and reclaim with the segment of totally sharp blade general＞0.8kb with phenol extracting (Sambrook et al., 1989).
(7) cDNA and vector arms is connected
The cDNA that reclaims is dissolved in the water of 20 μ l, and taking-up 1 μ l is used for determining per minute sum (c.p.m.) from the testing tube of second chain reaction, and calculates the amount of cDNA.The library titre is 3.5 * 10 after testing
6Cfu.
Five, the amplification in phage cDNA library
The cDNA library cultivation of increasing to obtain complete cracking, is collected all phages at a plurality of culture dish respectively.-20 ℃ of storages are as the deposit in library.
Six, Charon BS phage library (or clone) transforms the pBluescript plasmid
At cumulative volume is to add NotI Restriction Enzyme digestion 10～20 μ g phage libraries (or clone) DNA2～6 hour in the reaction system of 200 μ l, and 65 ℃ of incubations 30～60 minutes are with deactivation NotI.It is 1ml that adding connection buffer (10 *) 100 μ l and water are supplemented to cumulative volume.Add 2 μ l T4 dna ligases and spend the night at 12 ℃ of incubation several hrs.With 0.1 volume ammonium acetate (final concentration is 3M (pH5.2)) and 2.5 volume of ethanol deposit D NA.70% ethanol sedimentation DNA, drying also is dissolved in 10～50 μ l water.As transforming appropriate host E.coli cell, electroporation changes in the bacterium and breeds under suitable microbiotic is selected to produce mean size in the pulsating cDNA of the insertion of 1.5kb library then with 5 μ l.The library is not contained less than the insertion segment of 500kb and non-recombinant clone.
Embodiment 2
CDNA check order (main agents is all available from Amersham Pharmacia company)
Operate according to " using the MultiScreen96 orifice plate to prepare plasmid DNA " specification sheets:
(1) with the cDNA library dilution that obtains, carries out the gradient test, select best weaker concn.
(2) at LB solid medium (1L: peptone 10g, yeast 5g, NaCl10g, agarose 15g, pH7.5) last coated plate.
Cultivated about 16 hours for (3) 37 ℃, until growing bacterium colony.
(4) with colony inoculation at 96 orifice plates, every hole adds 1ml 2YZ (Amp+) (1L: peptone 16g, yeast 10g, NaCl 5g, Amp final concentration are 100 μ g/ml) inoculation single bacteria clone.Cultivated about 18 hours for 37 ℃.
(5) 1500g is centrifugal 5 minutes, abandoning supernatant, collecting cell.
(6) add 200 μ l Solution I (50mM Tris-Cl, pH8.0,10mM EDTA, 0.1mg/mlRNA enzyme A, 4 ℃), seal, the vibration mixing with Tape.
(7) add 200 μ l SolutionII (0.2NNaOH, 1%SDS, room temperature), seal with new Tape, upset mixes 10 times.This moment, lysate should transparent, thickness, did not contain bacterial debris.
(8) add 200 μ l SolutionIII (3M ammonium acetate, pH5.5, room temperature or 4 ℃), seal upset mixing 10 times with new Tape.
(9) boiling water bath is 5 minutes.
(10) ice-water bath is 10 minutes.
(11) a MultiScreen96 orifice plate is placed on the new deep-well plates.
(12) from the 10th step, take out bottom clear liquid 300 μ l and add in the MultiScreen hole.
(13) 2500g is centrifugal 5 minutes, and lysate is all changed in the following deep-well plates.
(14) take off deep-well plates, add 200 μ l aqueous isopropanols, seal with Tape, upset immediately mixes 3 times.
(15) centrifugal 15 minutes (3990r.p.m.), deposit D NA.
(16) water dissolving DNA again ,-20 ℃ of preservations are standby.
(17) dilute with water universal primer M13 (the M13 forward primer is 5 ' CCCAGTCACGACGTTGTAAA ACG3 ', M13 reverse primer 5 ' AGCGGATAATTTCACACAGG3 ').
Attention: the volume that is added to the DNA of each reaction and primer will depend on their concentration.Adjust the amount of the sterilized water that adds, to such an extent as to the cumulative volume of DNA, primer and water is 12 μ l.The final volume of reaction mixture is 20 μ l.
(18) on 96 orifice plates, each template that will check order adds following reagent.
DYEnamic ET terminator reagent is pre-mixed thing 8 μ l
Primer (5 μ M) 1 μ l
Dna profiling 11 μ l
Cumulative volume 20 μ l
(19) with mixture light shaking thorough mixing.
(20) 96 orifice plates are sealed and are put on the PCR thermal cycler of pre-designed program.
(21) carry out the polymerase chain reaction according to following condition.
95℃，20s
15℃，15s
60℃，1min
The 20-30 circulation
(22) after circulation is finished, the precipitation of simple centrifugal collection pipe bottom.
(23) add 2 μ l 7.5M ammonium acetates in each reaction tubes ,-20 ℃ of placements at least 30 minutes.
(24) centrifugal 30 minutes (3500r.p.m.).
(25) remove supernatant.
(26) add 100% ethanol of 2.5 volumes (about 55 μ l) or 95% ethanol in each reaction tubes, and mix.Making the alcoholic acid final concentration is 70%.
(27) centrifugal 20 minutes (3500r.p.m.).
(28) remove supernatant, vacuum-drying or dry air precipitation.Do not want overdrying.
(29) will precipitate in the water that is suspended in 10 μ l again, firmly shake 10-20s, and guarantee to suspend fully.Simple centrifugal collection sample.
(30) sample being put into Megabace1000 checks order.
(31) sequence that obtains is rejected carrier sequence and redundant sequence.
(32) with the nonredundancy sequence public expressed sequence tag database is retrieved, its classification.
Embodiment 3
The structure of database
The rice cDNA plasmid uses the M13 forward primer by 3 ' end order-checking, remove the carrier sequence in the sequence and revise 3 ' end measure fuzzy base in the sequence after, it is invalid that fragment length is considered as less than the sequence of 100bp, all sequences are utilized DNATOOLs5.1 (1995-1999, S.W.Rasmussen) compare and remove the ESTs that obtains 50 tools, 3 ' end Poly (A) behind the redundant sequence, the GenBank paddy rice database (by in October, 2000) of these ESTs and download is searched for Blastn, the Blast highest score that obtains, probability and homologous sequence length and function identification are described and are compiled the ESTs database.
Embodiment 4
The preparation of biochip
One, new expressed sequence tag is increased again
The rice cDNA plasmid inserts fragment PCR amplification (MBS 0.2S PCR instrument-HYBAID company), primer is that (forward primer is 5 '-CCCAGTCACGACGTTGTAAAACG-3 ' to universal primer M13, reverse primer is 5 '-AGCGGATAATTTCACACAGG-3 '), the reaction system of per 100 μ l comprises: 10 * PCR buffer, 10 μ l; 25mmol/L MgCl
27 μ l; Each 1 μ l of forward and reverse primer of 100ng/ μ l, 20mmol/L dNTP 1 μ l, the Tag DNA Polymerase of 3U (Promega, USA) and the plasmid template of about 10ng.The pcr amplification flow process: 94 ℃ of pre-sex change 4min, each is circulated in 94 ℃ of sex change 30s, 58 ℃ of annealing 60s, 72 ℃ are extended 120s; After 36-40 the circulation, 72 ℃ are extended 10min.
Two, the PCR product is handled
Add 100 μ l Virahols and 10 μ l sodium-acetate (3mol/L, pH5.2) in-20 ℃ the precipitation 8h, 4 ℃ of centrifugal 35min of 3950rpm, abandon supernatant, precipitation is washed with 70% ethanol (W/V), is dissolved in 20 μ l DNA sex change liquid (0.4mol/L NaOH, 10mmol/L EDTA) after the drying.
Three, chip preparation
CDNA after the dissolving of sex change liquid is used for the some system of cDNA chip, the cDNA chip is by arrayer (Genomic Solution, USA) use the 384 pin mark systems of diameter as 0.2mm, the microarry carrier is nylon membrane (Millipore Nylon N+), all some points are made as 36 * 24 one-level battle array, and each o'clock is parallel twice repeatability with proof test in 4 * 4 the secondary battle array that 8 genes constitute.
The information of sequence table (1) SEQ ID No.1: (a) sequence signature:
Length: 533 bases
Type: nucleic acid
Chain: strand
Topology: linear (b) MOLECULE TYPE: cDNA (c) the original source: rice (d) SEQUENCE DESCRIPTION: SEQ ID No.1: TGCCTGTTTTTGATAAACCTTCAAAAAGAGGCGTGGTCTGTTGAAAAATACTGTCACTGAAGTAAATGGAGCTATGGAGCACCAGATGCAAATCTCAGGGCTGCTTCACTCATGAGCAAGCAAAGCTGAAACAAGTGACCCATTGGAGCTGTGATGGACAGATGTCATGAGTTCTTCCTTGAGAATTGATGGCAGTTGGTATAAACGAGAGAATCGATAGTGCTGGTTGATGTCGTGGGACAATTGAGCAACTTGTCGATAAACACTTAGAGGCTTGGCATGTAACACACTGGTATTCTGATAGTGCTTCTAGGGTTTCTCCGTGATGTTGTAATAGAGCATAGTTTTCCTTGTTTCAGATTGAGTTGCTATATTTTTTTGCAGTGACCATAAGAGTGATATATTTTCATTGCTCCTGTACTTGTATTCAGATTATGGCAACTATTGCTTGTAATCAGGGTGCAAGTTTTTAGCCTATTTGAATAAATATATAAACTTCTTTTGGTCTTCAATGTCCAAAAAAAAAAAAAAAA (2) SEQ ID No.2 information; (a) sequence signature:
Length: 179 bases
Type: nucleic acid
Chain: strand
The initial source of topological framework: line style (b) molecule type: cDNA (c): paddy rice (d) sequence description: the information of SEQ ID No.2:ACACCCATCTCACAGTTAGATTGGCTCTCTTGACCATTAGCTTTGTATCTT AATTATTGAGCAGGTCGTCATGTTACCGTGGCCACTATCGTGTCTGTTCTCACGTC ACAGTTCTGTGTAAATTCTCATACAGTAGATTTTTTCTTTCGAAAACGACGTTATA TAAAAAAAAAAAAAAA (3) SEQ ID No.3: (a) sequence signature:
Length: 483 bases
Type: nucleic acid
Chain: strand
Topology: linear (b) MOLECULE TYPE: cDNA (c) the original source: rice (d) SEQUENCE DESCRIPTION: SEQ ID No.3: GAGCTCAAGGTCAAGGAGATCAAGAATGCCGCCTCAGCCATGTTCTCCATGTTCGGCTTCTTCGTCCAGGCCATCGTCACCGGCAAGGGCCCCTTGGAGAACCTGCTCGACCACCTCGGCCGACCCCGTCGCCAACAACGCCTGGGTCTACGCCAACCAAGTTTCACGCCGGGGCTCGTTGAATGGCCCCAACCGCCCATTTGTAGAACTAACTTCTTCCTCCTCTCCCATTCGCCTTCGATTGTACCAAATGGCTTTGCCACCAGAATTTGTACGGATTGCCTGTGATGAAATCTGATATGATCCATCCAGAATTCAGAAACTGAAAAAAGTTGGGGTTTGCAACTTATGTGTCAGCTCTGCTTTAAGCTTAGTTAACTCTTTTGATGTTTTAATTTGTACATTTGTGTACTTTGTAATGATCCATACGAGACCTAGTGTTTGATTATTGCTAATTTGCTGTGGCAAAAAAAAAAAAAAAAA (4) SEQ ID No.4 information: (a) SEQUENCE CHARACTERISTICS:
Length: 544 bases
Type: nucleic acid
Chain: strand
Topology: linear (b) MOLECULE TYPE: cDNA (c) the original source: rice (d) SEQUENCE DESCRIPTION: SEQ ID No.4: ATTCATCGGCTGCACGCTACGCTTTGGGCGGTCGTAACCCCTTTGAGGGCCTGCAGATACCTTTCTCCCTTGGCGAGTTTTCTCTAGGTGAAAACCACATCTCCTTAGATGGCGATGCGGCATCCTTGATGTCGTGACCTCCTTGGGGGCATCGCTTTTAGAGTCTCGTCTTTGTGGTGTTGTCTTGGCCTGCGGCGATCGGCCACGCATAGCGGGGGTCGTCTCGGTGCTAGGTTTTTCTCTGAGTGGGTTGTGCTTGTGTGATTAGCATGTGGCTTTGTTGTGCATTTCGATGCACCTCCGACCTCGACAGCCTCTGTCGAGTTTTTTCTTGTAACTTTATTCCTTCTTAATATCTCGGATGGCCTCCTTTGGCCTTCCCGGCGAAAAAAAGGAGTGATAGCTACTACTCAATCACTTAGTCATGTACAGCTGTTGTCGTGAACCAAAGGGAACAAATCAATGTAAATTATAACAGAAGCGTATAATATGACACCAGCACGGGCGATAGCTACTACAGTATACTCAAAAAAAAAAAAAAAAA (5) SEQ ID No.5 of information: (a) SEQUENCE CHARACTERISTICS:
Length: 534 bases
Type: nucleic acid
Chain: strand
Topology: linear (b) MOLECULE TYPE: cDNA (c) the original source: rice (d) SEQUENCE DESCRIPTION: SEQ ID No.5: CCATACGACGCACGATCGCAGCCCCCGGCACCGGCGCGTCCAACCGCGGCGAAGACGACCGTGCGTGCGGCGACCGGGGCTTCGACACTCAACCTGCCGGCGCTGCCGGACGTCGCCGCCGCCGCCGACCAGCGGTGCGCGGCGGAGGACGACGAGGTGCTCAGCCCTCTCGCCTTCAAGAAGCCCAGGCTCATGATCCCGGCATAGCTAGCCAAGCCCACAAGATTTGTTTAATTTTAGCCATAAAATTCCATTAAATTAAACCCATAGTTTTTTCTGTTAATTACTTTCTTAATTTGGTGATTAGTCTTAGGAATGATGATTAGTTTGTGTATATAGCCCTTGTTTGTTCATCTATCATTTGTATCTTGTAATTAATCCCCTGTTAGCTAGATTTGGTTTAATTGGATATAGGAGTTACAGATCAATTCTTTCATTGGTTGAATTGGTTTAATTTATGTATATATATACCATATGTAAAATACATGTATAAGAAAAATACGCATATGTATTTAAAAAAAAAAAAAAAAAAAA (6) SEQ ID No.6 information: (a) SEQUENCE CHARACTERISTICS:
Length: 552 bases
Type: nucleic acid
Chain: strand
Topology: linear (b) MOLECULE TYPE: cDNA (c) the original source: rice (d) SEQUENCE DESCRIPTION: SEQ ID No.6: ATCAGGGCATCATTTCGACCTTTTAAGAGAGAAGAATCCACAACTTGAAGCCTGCACGGATGAACATTTTACGTTCGGAGAGGTGGTCCACAACTACCCAACTGGCCTTGCCAAAAATGCGTACACTAGGTCAGAACTTGGTGTTCCACATTGAGGTATATGGACCAGAGGCAAACAATGACTGGAATCTGCAAGCAACCACTTGATTGCATCATGGCTGAAGCATAATTCAGACAACTATTTGCGCTGTTCCCAGCTTGAGTCCATTTTGTTTCAGAAATTGTCAGTGTGAGGTGTTCGCCTTTCTCTCTGAGGGAATGTGTGCTGTTGTTGGTGTAAAACAAAACAAGAAAGATCGTATTGTTAGAATAAACTACATCTGTAAGTTTGTAACGTAATTACGCATAATGGTTAATGTTTGTTTCTAGTTCTGAATTCTCTGTGCCTTGGTTGGTGCCTTATCCCCCAAACTCAAAGAGGGTTCTTGATTTTGTCATGTATGAGAGACAGTGAAATGGAGGGCTTAGTGACAGGAAAAAAAAAAAAAAAAAA (7) SEQ ID No.7 information: (a) SEQUENCE CHARACTERISTICS:
Length: 483 bases
Type: nucleic acid
Chain: strand
Topology: linear (b) MOLECULE TYPE: cDNA (c) the original source: rice (d) SEQUENCE DESCRIPTION: SEQ ID No.7: AGGGCCCGATAAGCCCTATTCTTGGATATTGGTTAACCGTTGTTGTTCTCAGTCCCAAGGACGCACAGATGGTTTTTCGTTATCTTTGGCCACAGATTCGTATGTCATGTCATATGAAATGGATAAAAGGGAAGTGTGTTTTATACCATAAATTTGGATGTGGTTACGAGAAACGTTATCTGTCCATATCGTCCCTTGTTCATGAAGTCATTAGCAGATGGTCCCTAATAATCTGCACAGTAGCTACCGTACTGGACTGGCAGCTCTAGTTGTCACCTTGATCTTTTCTGATGATATGGGAACTAGATAATCAAATTGCTAGGAGGGTGAGCCACCTGGACACATCTTTTAGTTTGCTTTGTAATCCTTGGACTGCCACAAACAAGTGTATCATATATATTATTTTTTTTTTATTGATAACTGGTAAATTTCTAATTCTTTCTGAAATAGTAATTCTGTTCTTGGCAAAAAAAAAAAAAAAAA (8) SEQ ID No.8 information: (a) SEQUENCE CHARACTERISTICS:
Length: 521 bases
Type: nucleic acid
Chain: strand
Topology: linear (b) MOLECULE TYPE: cDNA (c) the original source: rice (d) SEQUENCE DESCRIPTION: SEQ ID No.8: CGGCGAGCTCTCTGAGATCGCTGACGCAAGCCAAGAGACGAGCTGAGATCGGCGAGGCTGAGAGAGCTGAACACTCTCAAGGCCCACTCGAATCGTGTGAACTGAAGGGGCTGGACATCGACACGATCCACCAGAACTACACAGTGTGAGGAACCCCCTCGGCATTCAACGAGAGATCGTCATCAGCGCTGGAGCGGGAATTGCAACGGCGCTCTGGTTAAAGGAAATTTTCGATGAATGATTGGAAGAACAAAAACAAAAAACATGGCTGATCTGAACAGCCCTAGTTGTAAAGTGCTACCAAATATATGGTCCGGTTTCCCTCTTCTAGAGAGGTTTTACGTTCTAGTGGAGTACCGTACGTACGTGTTGGAGTACGACGACGTGTTTGTGATCGTTTTTGGTCTTTTTTTACTCTTTTCCCCCTAACTAGCGGTCTTCTTGCGGAATGCAAGATGGAGAAATAATGGATGAAAAATTTTCTCCCCGTTAATTCTCACTTTGCAAAAAAAAAAAAAAAA (9) SEQ ID No.9 information: (a) SEQUENCE CHARACTERISTICS:
Length: 500 bases
Type: nucleic acid
Chain: strand
Topology: linear (b) MOLECULE TYPE: cDNA (c) the original source: rice (d) SEQUENCE DESCRIPTION: SEQ ID No.9: TGGCCTTGATGAATGCACATTCTAAGTTTAAGGAGTCTTGAGAGATGGAAGCAATTAATATGTTTTATGGACTATATTACTGTCTGCTCTTGTTGGATACTCACTCTTCCAGAAAAAGACGACGCTAAGGCGCTGACCATTCATACACTTTGACCCCCACTTGACCTCACTAGTGGCTGCTTTCAGCCCTAATCCTAATAAGGACTTTTCGCTCTTTGATGCGATGTGATGAGAAGAATCCTCTTGAGTTAGCAGGTGGACTGACTTGTTCAATCATGCATACTACAGGTAACCGCAGTTTTAGTTGCAAGTTACTAACGAAAAAGAAAAGATGTATATGATACCGTTGAATGTTTGCTACCAAGTCTATTCTTGGGAGGGTACCGGTTTCTACTGAGCTTTGATTTGTTGAGTCCCATGCCCCAGTTTTCAGAATGGACTTGTATCGATACGAGTACCACCATGGTTAATTGCCGATGGAAAAAAAAAAAAAAAAAAAA (10) SEQ ID No.10 information: (a) SEQUENCE CHARACTERISTICS:
Length: 440 bases
Type: nucleic acid
Chain: strand
The initial source of topological structure: line style (b) molecule type: cDNA (c): paddy rice (d) sequence description: the information of SEQ ID No.10:AAATATACCTGCCGTTTGACCGTTTGGGAACACCTGGAACACAATGAAGA CCACCTGGAGAGTGCAAATGGATTAGTCTGTGAACTGAAACTTGGAGCCAAGTGAA TTACCTTACGCTGCCTGAAAGCATCTGCACCAAGAAGTGTCAGTCTTTCAAGTAAG CTTGTCGCTGAACACAGATCCTGCCCAACTTGCTCAACATCTTCTTTTGTTTTGAA ATATTGATCCACTAGTGAACCAGCTACCTTGCTTGCTCGAGGAAGGAGCTAGAGCT ACTGCCCAACTCGTGTATTATGAGAGCATTTTGGGAGATTAAGCTTTTTTTTTGTT AATTTGTGATGCTGCTCCTGTTATTTTGCATATCCTGCGGGATCGTATCGCATGAC TATCTATGCTTGTGCTGAATCATCCTATGCTTCTTGTTAAAAAAAAAAAAAAAA (11) SEQ ID No.11: (a) sequence signature:
Length: 590 bases
Type: nucleic acid
Chain: strand
Topology: linear (b) MOLECULE TYPE: cDNA (c) the original source: rice (d) SEQUENCE DESCRIPTION: SEQ ID No.11: TCCAGGTGCCCCCGCCCTGCTTCATTCTTTCATACGCCGGCCCGGGGAAAGTCTTACCGTCTCCTAACTCCGCCGCGGCTACGGTCTACTTCAGTTCCACGACCCCGCCTGCTTCTCGACGTCTGGATCCATCCATCCATGCTCCTCATGCCTGCCTGCTCATGGCATCCCACCAATCATGATCATCCTTAATTAATTCTCCTCCTTGCCATATATAATTGCTTGCTTAATTGATCGATCTACATTCTACAAGCACACGCCCTGATGAAGAAGCTATATAATTAAAAGCTCAGCTCAACTGATCGAGTGAGGATCGGAGTAATCTTGCATATATGCCTGCCACCCAGTGGTTTTATGTATTTACAGTACGAATTAATTTGACCTTTTTCTTACTTAATTTTCACCGCCTGTGTTTTTTTTGGTACTACGTACAGTGCCATGCTTGTGGCTAGCTGCATGGTTCAGGTGTACAGCTACTTGTAGTAATAATTCGCATATAGAGAGGGGATAATTAACATTGCTACATCTTGTAATTACTACTAGAATATATATAATAATTGTACTTATATTCAAAAAAAAAAAAAAAAAAA (12) SEQ ID No.12 information: (a) SEQUENCE CHARACTERISTICS:
Length: 572 bases
Type: nucleic acid
Chain: strand
Topology: linear (b) MOLECULE TYPE: cDNA (c) the original source: rice (d) SEQUENCE DESCRIPTION: SEQ ID No.12: GTCATCGTCGTGCGTGCCTGCCTGTCTCTCCGCGAGGAGGTACACCCCTTGGCTACTTCACCTGTGGCCCGGTGGCGATCGCGTGGGGGACTGTGGGCTCGGTCGTCATCATCCTTCTGCCGGTGGCCGAGAGCTGGACCACCATCACCAAGGTCTGCGCCGGCATGTTCACCAACGACGCTGTGTACGACCGCCTCGACGACGTCAACCTCCGCCTCCGCGCCATCATGGGCGCCATGCCCGAGGCTGAGAAGCGCTACCGCCAGCTACACGAGACGGAGATGCACCCTGCCGGAACCCATCCGGCCAACGACGACGACGACGACAATAATAATAATCAGATGATGCACTCCTGATTCCATCCAATCATCCATCCATCCATCCACTAGACTAATTAAGATTTCTACGTACTATATACTACTCGTACGTACACTTTTTATATACACACATATATGTATGGAGAGCCTATATAATTAAAAAAGAGTGTGCATCAGCAGCGTGTGCATGATAGTGAACACGTTTTGTGTATACTACCAAATAACCGATGTTTCTCAAAAAAAAAAAAAAAAAAA (13) SEQ ID No.13 information: (a) SEQUENCE CHARACTERISTICS:
Length: 534 bases
Type: nucleic acid
Chain: strand
Topology: linear (b) MOLECULE TYPE: cDNA (c) the original source: rice (d) SEQUENCE DESCRIPTION: SEQ ID No.13: GCCCCAAGTGAGGGCTCTCCCACAACAGCTTGGACACGAGCCACCAGTTTGAAAGAGCTCTCCCTTGTAGCAGCAAGCTGCTTGAAGTCGGTGAAGGACCTTCCATCCCTATCTGGTTTCCTTTCTGTTTGTAGATGTGAAGGCCTGGAGAGGGTTACAGAACTTCCCAAGTGAGAAAGCTGTTTGTAAGTGTTTGTCCCAATTTGAGCTGTGTTGAGGAGTTAGGCACGTTTGGAGCAGCTATGGTTGGATGTGAATATGGAGGACTCATCACCGTGGGTGCATGGGCTTCGAGAGCAGTACCGCCACCTGGATGTCTACACGTGGCCTAGAGAGTGAGATGTGAAGACCCACTAAAAGACAGTAGATTGGTAGAGACACAAGGTTGTTAATCTTGAAGAATTTGGGCTGTGCAGTCACTTGTAATATGTATTTTTGTTTTACCTAGTTATTGGTCTTTGAAATATTAAAAAAATGTTATTTTTTAAAAAAAATAAATAAAACCAAAATATCCAAAAAAAAAAAAAAAAAAAA (14) SEQ ID No.14 information: (a) SEQUENCE CHARACTERISTICS:
Length: 427 bases
Type: nucleic acid
Chain: strand
The initial source of topological structure: line style (b) molecule type: cDNA (c): paddy rice (d) sequence description: the information of SEQ ID No.14:CCTTTCAATAAGAAAGTGTGGAATTGTACACACCAAGGAAGGCACCCACC AGTATAGGACGTTTCCTTCGAAGTGGGGGCTCCCCCAGAGTTTTGCTCGCGTGCGC CAAATGTATGCCTCGCCCCCACCCGATATGCCCTCCCAGTGGTAGTTTACTGTGCC AGATGTATGCCCGGACTTGCGCCCCCATAGGTGTGTTGGGATTTTAGGGAAAAAAA TTGTCGAAATTGTGCACAGTGGGGTGCTTTCGGAATGAAGTTGCGCATGTGAATTA GCCGCTGGTGTGGTAAGTGTTGTAAGTGGGTTGAGAAATGGATTTGCAGACTGCTG CATGACCTGGTGATGTATGTGGTGCCATGAAATGCTGGAAATGCGATGTTTTGGGT TGGCCCTGTGCCATGGTTCCCAAAAAAAAAAAAAAAAAAAA (15) SEQ ID No.15: (a) sequence signature:
Length: 527 bases
Type: nucleic acid
Chain: strand
Topology: linear (b) MOLECULE TYPE: cDNA (c) the original source: rice (d) SEQUENCE DESCRIPTION: SEQ ID No.15: CGATATGTCTGGTAACCGTTCCAGTTATCACTCTGGTGATGTGTCTGATGGAATGTGGAAGAGCTTGAGCGAAGCTATAACAGAAGTAGCACGCAGCTGGAGAAGACCTCAAGATTTGTCCACTACAAGGTATATGGACGACTCTGACACTTGAGGAAGGGTTGAATCTTCCTTTTGCTGATCTCCCGCAGAAGGATGAAGATGCTCGACATGGCACATCTGATACTAATGACCCCACGCCAGTCGGCCTTCCTGTAAGAATAATTCCTAGAAGCAGTGACCCTGTTTAGACTGAAAAGCCCTCAGATACGTATGTTTGTGCATGGTTGTAAATATCTGTGTGAACCACGTCACAACTTCACCAAACTGCCAACCCGCAAATTCATTTGTACAGAACCACATATTACCTCACTGTATAGTCTTCTCCCTGCCCTCCTAGGGATTGTGGACCAGGGGAAGAACCATTCTTTTCCAGCCCGAAATCCATGGACCCCCTTTTCCCTCGTTTCATTAAAAAAAAAAAAAAA (16) SEQ ID No.16 information: (a) SEQUENCE CHARACTERISTICS:
Length: 518 bases
Type: nucleic acid
Chain: strand
Topology: linear (b) MOLECULE TYPE: cDNA (c) the original source: rice (d) SEQUENCE DESCRIPTION: SEQ ID No.16: ATAGCGAGAATCTGCTTAATCGGGAGCTCATACAACCACCCCCGGGGACTCGGGAGAGAGAACTGCTACAAGCGGTCAATCAACGTCGGTGATGCTAACGAGTTTTTGAATGACGCGTCCCGTACTGTGATGCACGAATGATTCATAAGCTCACAGGGCGCGATTTCTCTTCCGGATCATCGTTGTCGGGGCGGGAAGCTCCACCCAACATGGTAACGAGCATCTGGCTTCAGGAGACACTCGAGAGGTGGAACCTGGTTTATCCGTGAAGGTTCAGGTTCAGAGGCTTATACTTCAAGCGACTTCGCATGAAAACTTGTGCCAAACTACGTCGGGTGGTGCCCGCTTTTGGTGACCTTCCGTAACAGTGCCATGTACATATTGTAAATAACGTGTACATATAGATAGATATCTTGTAAAGAGTGTTGTATTTGGCAGTGTACATGTACCAGAATTTCATTTGTTAATGAAACCGTCATTGGCATCTTCGTGTTATTGGACAAAAAAAAAAAAAAAAA (17) SEQ ID No.17 information: (a) SEQUENCE CHARACTERISTICS:
Length: 487 bases
Type: nucleic acid
Chain: strand
Topology: linear (b) MOLECULE TYPE: cDNA (c) the original source: rice (d) SEQUENCE DESCRIPTION: SEQ ID No.17: TCCATCACACTTTCAATTCCGCTTTCTTGCTTTCTGCCTTCTCCTGGATACACCTCCCTCAACCACCAGCTTTCAATCGCGCTTGGACTCCAAGCCCAACGCACTCCCCATTCACCGGCGATCAAACTGAATCACAACCAGAGCCTCTTTCACCATACACAAGGTACGAGGAACTCAAGCCTCCAAGCTCCCAAACCCCATCTACCCCCAACTATAGAAGCAAGATAGTTAGCATATAAGGCTATATTCGTTTTTTGCCTTGGCCAATCATCACTCAAGATCCACGTTATCCACTACTAGTTAATTACACTGTCATCCACGGAAAAGCGACTTGTATGTTTGTCATAGTCCAAAATTCAAAAAAAACAAAGAGTAGTATTGGAATTGGAAGTCAACAAATTAATTCTCTCTAAGTCTTACAATGTTTGTGCACCAGACCCAGGAATAATTTAAACGGCATCAATCAATAAAAAAAAAAAAAAAAAAA (18) SEQ ID No.18 information: (a) SEQUENCE CHARACTERISTICS:
Length: 258 bases
Type: nucleic acid
Chain: strand
The initial source of topological structure: line style (b) molecule type: cDNA (c): paddy rice (d) sequence description: the information of SEQ ID No.18:TTGAGATAGAGGAAATAGTATGATCATGTACTCCTTGAATTTTGGGACCG AGTCAGTTTGCCAAAGGGGTAACATTCCTTAGTGCCAGCGATGCAACCTCTGTGCT TTTTGGGACAATTTTTTGGCAAGTCTTGCCAGCGATTGGATTGATGTTTTTGCACG ATACTATTTTGTAAGGATTGGAGTTGGTACTGCGCCTCTTACGCTCTTAACAGAAG ACTTGCCCCCTCTGTGGCTCCGTATAAAAAAAAAAAAAAA (19) SEQ ID No.19: (a) sequence signature:
Length: 533 bases
Type: nucleic acid
Chain: strand
Topology: linear (b) MOLECULE TYPE: cDNA (c) the original source: rice (d) SEQUENCE DESCRIPTION: SEQ ID No.19: GCTTCTTGGGCCGTGATCGTCGCGACCCCGCCACCGGTTTTCATCGCACGCAGTCACCACATGGTCTCCACGTTTACTTCCTCGCGGCCCCCAGGCGCCCACGCCGTCGCCGAACGTCGACGAGGTCCAGCACGGAGATGCCTTGGGACGCTCGGCGTCGCCAGGATCCCGCGACCGGGCGTCTCGTTCGCTGCTGGGGCACGGAGCCATACATGACCATGTAAAACTTCATCTTCTCATGAGGTGAATAGCCAAATGATTTTGCTTTTTTTTTTTTTTGCTCCAGTAAATGGGAAAATTGCTCTGGTTAGTGAGCAATTAGGGATTGATCTGGTTGATTTTGTTTTGGTGGAACATAGAAGCAGCTGTCGGTGGAAGAGAAGTGCTTTTCACTGATGGTGAGCATTTCGTACTTCTACTTGAGAGGATATCTATGTGCCTGATGAGCTGAATTCTGCATTTGTAAGTACAGATTAGATCAACTCAATGGTATATTCGCGCTTGTAACTTGTACAAATAAAAAAAAAAAAAAA (20) SEQ ID No.20 information: (a) SEQUENCE CHARACTERISTICS:
Length: 591 bases
Type: nucleic acid
Chain: strand
Topology: linear (b) MOLECULE TYPE: cDNA (c) the original source: rice (d) SEQUENCE DESCRIPTION: SEQ ID No.20: TTCGCGATGGACACCGGCAAGCCTCGCGCAGCACGGTGCAGCTTCGGGTGCTCGCCCTTGCCGGTCTTCCTCGACCCGTAGTAGTGGAATCCCCGCACCGTCTCGAAGCAGGCGGAGCAACGCCGGCGCCGCCGGCGGGGCCTCGTGCGGAGCTCCATCGTGCCCTTCACCAGCGCGTGCTGCAGCGTGGGCGTCGCGAGGGCCAGCTCGTGTGGAGGGCGAGGTGTGTCGGGTGGTTGTCGACGACGGAGGTGTACCTCGTGCCTTCTCCGGGTAGCATGCAGCCGTCGCACTGGAAGGCGACCGCGGCGGCGTCGCCGGTGGGATGCTCCACCACGTGCAGCCTCAGCATGCAACCCAGGCGGGCAGGGTGGATGATCTCCGCAGGAAAGCTCGAGCTCACCATAGCTGAATTAGTTAAAGCTTGTTCTCCAGATATTCTCACCCCCTGCTCATATATAATTGTAGATATATATCCATGTATGATTCTAGCTACATGTATATATAAAGTACATTTCATTCATTAATCGATGACATCTATAAATATAAACCAGTATATTGNTTTGAATGGTAAAAAAAAAAAAAAAAAAA (21) SEQ ID No.21 information: (a) SEQUENCE CHARACTERISTICS:
Length: 480 bases
Type: nucleic acid
Chain: strand
Topology: linear (b) MOLECULE TYPE: cDNA (c) the original source: rice (d) SEQUENCE DESCRIPTION: SEQ ID No.21: TATACACCGTCAACTGACTTTCTTGGGACCCCGGTTGTCTGAAGTGCACACCTGGTATTTGTTGATTTCTTCAGCAAATATTGGATGCCTGCAATTCTAATAGTCACACTGTTCCAACGTTCAAGAAGTAATACAACAATATCATTGTCTCAATTTTCCTACCGATACACAGAATTACTGAAACGACACCTAGCCTTTCTAGCTTGTACATGCTGTTACTTTGAAGCATAAACTCAATATAACACCAGCTAGGTGGATGTCAGATGGACGGGTCGTAATCATATACATGTTTACTTTGTAATTTGTTTATCAATCAAGCTCCTGCTTGTAATAAGATTGAATAGAGAAGTGAAATGTACAGATGCTTTCCCGTATTTCTGTATATGTTGTAATTTGTAGAATAGTAAATCAACAAAGAAGGTATACTGTGGACATATATTAAGATTCTTTCTCAACTTTAATCCCAAAAAAAAAAAAAAA (22) SEQ ID No.22 information: (a) SEQUENCE CHARACTERISTICS:
Length: 346 bases
Type: nucleic acid
Chain: strand
The initial source of topological structure: line style (b) molecule type: cDNA (c): paddy rice (d) sequence description: the information of SEQ ID No.22:GTCGGCGGAATGGGTCTATGGCTAGGCATCATCTCGGCCTCTTGGTGCAA GTCCTGCTACTAATGCCATAACACCTATGCACCAATTGGGATAAAGAGCGGCTAAT GCGAAGGACAGGGTCTTCAGTTCTTCTCTTCCTTCAGATCTCGCACATGAAGTTAG AGGTGATAGTTGTGAAAGCGTGCTTGCAGACTACATGCTATTACTAATCAGGCCGC ATTGATCTAGTTTCTCTTGGTTGGGTGTCGATCGTAAAATTTAGTATACTGATCTG GAAGCTTAAAACCACTTGTGTATATTGCCACTTTTATATATATGCTGCCCTTGTGA AAAAAAAAAAAAAAAA (23) SEQ ID No.23: (a) sequence signature:
Length: 512 bases
Type: nucleic acid
Chain: strand
Topology: linear (b) MOLECULE TYPE: cDNA (c) the original source: rice (d) SEQUENCE DESCRIPTION: SEQ ID No.23: AGCCTCGTTATGACTGTTCCAACCAAGATTGGGGCTTCCGGCCCGGACAAGATCCACTGGGCCCGGGGCTCCCGAAGACCGGACGGCCAAGATCATGCGGAGGATCCTGCGGAAGATCGCGTCCAGGCAGCTGGACGAGCTCGGCGACACCAGCACGCTCGCCGAACCACGGAGTCGTCGACCAGCTCATCGCGCTCGCCGATAGCTAGCTTTAGCTAAAGCCACCGTCGTCTCGTCGCGTGCGAGGAACCTCTGCTCGGCCGCGAGTCTCATTTTCGTTATGAGCAAGATTACATTCTTATTCCATCAAAAAAAAATATGAATGATTTTTTTATGTGTCAGAAAAAATGGACTTTTTTTATGTGCTGCCGCGGCTTACGATCGGTGTAAATGGTGTATCACAGCACATATTAGAGAAGTATACTTGTGTACCATTGTATGCGTTTGACATTTTGTACAAGTCAGTAATTCCAGGCCGTAAAGGCTACGCATAAAAAAAAAAAAAAAAAAAA (24) SEQ ID No.24 information: (a) SEQUENCE CHARACTERISTICS:
Length: 509 bases
Type: nucleic acid
Chain: strand
Topology: linear (b) MOLECULE TYPE: cDNA (c) the original source: rice (d) SEQUENCE DESCRIPTION: SEQ ID No.24: CAATTCTCGAGAGGCTCGCAAATCGAAGGGAGATTCGTAAATCCTATCAGCTCGGCACAGGCTCTCCCTGAAATGGACGCACTGGGGTTGGTCCAAGGATTGGATGTGTGAAGGACTACCCCATGGAGCTCAGAATGCAAGCATCTGGAGATGGTAAACCTGCTCACACAAGGGCGTCGACTCCATCGACCGTCATGGAGCTGCCAGCATGCACTCTCACCTACACCCACTTACCATCATCTCCTCTTGGACCACATCCAGACTTCACTGCCCCAGCCAAGTTAGAATAGCATATGAGTATGTAACTAGTATGTGCAGCAGCGAGACACCCTTGCAGAATTGCAGTTAAGCTCTTGGTCGTAGAATGCATTGGCCAGAGTCAGACTGCTAGAGGTTAATGCCTGCTGCTTTTCAAAGGTTATGTGGATCTATTTGTGCTATGAATGAATCAATAAGATTAGTAATATAAATCCTCCATGTTTGAATTTTGCTTTAAAAAAAAAAAAAAA (25) SEQ ID No.25 information: (a) SEQUENCE CHARACTERISTICS:
Length: 535 bases
Type: nucleic acid
Chain: strand
Topology: linear (b) MOLECULE TYPE: cDNA (c) the original source: rice (d) SEQUENCE DESCRIPTION: SEQ ID No.25: CTGGAGTTGAGGGCTTCTGACAAGAAGAAGGGTGTGCTGCTCCGGTGCGTCGACGGCGCAGGTTCGCGGCGAGAGCTGGGTGCTCATGGTGGAGGACGACGCCCCGCGCCGGCGTCGGACAGTTCAAGGTGGTTCCGGCTGAAGCGCGGCCGACGATCGGCGAGGTGGAGACCATGCTGTACAACGTCATGGCCGCAAACTCGCCGGTGACCAAGTCGGCAAGATTCCTCCGGGGGCTCGTGTCCAATGTCACCGGAGGAAGGAAGGAGAAGAAGCATGATCTTTCTCGAGGCCACTTGTTGCAGTGAATTCATCAGTACTAGATTTTTTTTTCTTTTCTGAATGAATTCGACAGTAGCAGATGTTTTCATGTAATTTTACGATTTCGAGAATTCGTTCAGACTGCATATGAGCGAATTCGCCAGTAGAAGTTTGCAGTGAACCGTAACGAGTTTGATGAGTTCATATGCTTCCATGTGAATTAAATTTGAAAATATATTGTTCATTTAATTTTTTATCCAAAAAAAAAAAAAAA (26) SEQ ID No.26 information: (a) SEQUENCE CHARACTERISTICS:
Length: 523 bases
Type: nucleic acid
Chain: strand
Topology: linear (b) MOLECULE TYPE: cDNA (c) the original source: rice (d) SEQUENCE DESCRIPTION: SEQ ID No.26: ACTATGTGTGATTATCCCAACCCACTTTTTCTAGAGGTCATTGAATTTACCACGCTATTCCCAATACACAGTATTATTATCCCCTTATCCGGTGAGCATAACCCTGATTGCAACTGGATTCAAGCGTCAGGAGGAGCTGAGAGTCGACACGGCTGGTGGAGATAACCGCCGGAGCCCCACCGTTGGTTTTCTTCATCATCCCCGGAAGAAGGCCCCACCTTGCAGATCCCCGAGTTTTTGCAGAGGAAAGGGCGTTCACGGGTTTTCCACGAGGCTGAAACTTCGGCTTGAAGAAAAAAAAAAACTTAGAACTCTCACTAGTTTAGCGCACCCAGCTTTCTTTCTCGTGCTTTCCTCTTCTTCTTTTTTTAATTTTGTTAGGAGTTCGATATGTTTCACAGTTTATTTTTGCTGCTCAGATTTAGATGATAATGTTATGAGCCAGATATTTGATTCCTGAACCGTACTGTGCTTCCTGAATGGATAAACTGGAATTCTTTTCCAAAAAAAAAAAAAAAAAAAA (27) SEQ ID No.27 information: (a) SEQUENCE CHARACTERISTICS:
Length: 195 bases
Type: nucleic acid
Chain: strand
Topological framework: line style, (b) molecule type: cDNA, (c) initial source: paddy rice, (d) sequence description: SEQ ID No.27:GACAGGGCGTTTCTGAGGCTCCATGACTCTGTTCAATCTCCCTCCAGACA CATTGTCTGGTCCAAGGTGACTGCCACCTTAAGGACTATGAAGGGTGGTTCTTCTT TTGTAGAGCTTAGTGAACTTAGACAGAACACCTTGCCATTTCTTAAAAAAACACCC AGATATAGTTTTCTTGTACAAAAAAAAAAAAAA, (28) information of SEQ ID No.28:, (a) sequence signature:
Length: 522 bases
Type: nucleic acid
Chain: strand
Topology: linear (b) MOLECULE TYPE: cDNA (c) the original source: rice (d) SEQUENCE DESCRIPTION: SEQ ID No.28: AATAACCCCCGAGTATCACTGAAGATTAAGGGATAGATATGCACCACCCCAAATCCCCGGAAGGGCCTGGAGTATTAGGAAGAGGCTTGGATCCATATCTAATTGTCACCCCAACCATGAACCAATAGCCCGATGAAGACCATGCATACTTGATACCGGTGAGGACTGAGTTGTAACCAAGAGTTCAGGTATAATGGGGCCCATATGACCCGGAGAACTTTGTAAGAATTAGGAATAGAATCTGTGGGTGTAATGGCACTGGCCGAAAATGTTTTTGACTATACCCGAATGAAAATGACCCCAGAGTTTGTTGCCACGTCCACTGTATATGCACGCCCTACTACTCGGTTGTCTGATGTTTCCTTTTTTTTTTTTGAATTGATCGTTTTTTGTTTGGGTCATTTGTTACCACGTGGCTCGCACCTCTAGCACGCAGAAACGCTGTACTTTATGTGATGTTGTGCCCTGAGTACAGATATACCGCTGGGGATATCCTGATGGTAAAAAAAAAAAAAAAAAAAA (29) SEQ ID No.29 information: (a) SEQUENCE CHARACTERISTICS:
Length: 293 bases
Type: nucleic acid
Chain: strand
The initial source of topological structure: line style (b) molecule type: cDNA (c): paddy rice (d) sequence description: the information of SEQ ID No.29:CTCGGTTTGTGTAGTAGTATATACTTGCTGTTTGCCCCCACCACCCATGC GTTTATTAGCGTTGTGGTGTGTAGTTTTCCACTTTTAAGTTTCAGAGTTTCTCCTT TGATCCTCTGGGACTTAATTTGTATAGACATGTATGATGTTTTACTTGGAAAAATA AGGGAAAAAATAGAATGATGGATGACTTAATTAAGTTGCTTGAATTACTCTCTTGT AAGTGGAAGTGGTTATGCACCCACAACTCTGTAATATATTTAACTTCATTTTTTTC CAAAAAAAAAAAAAAAAAA (30) SEQ ID No.30: (a) sequence signature:
Length: 469 bases
Type: nucleic acid
Chain: strand
Topology: linear (b) MOLECULE TYPE: cDNA (c) the original source: rice (d) SEQUENCE DESCRIPTION: SEQ ID No.30: TCCATTTTTTTTGACATTTGTGAACTATTTTTTCAAATCAAGTCTTATAATGTGTAATACAGGGAGCCACACATAATGCATCAATTTTCAGATGAAAAAGCCGAGTGCACACAGATACGCCATTGGGCCCAAAGCGGTTTTTCTTTTCGTTTGGTTTGGATCCGTTCTTGGACCGGTTGTCATAGTACTAGGTTTGCAATGGGTAGGCTCCTATTATTCTCCGTCTCAACCACTTGGCAGTTAGTCAGTTTAAGACTTAGCAACAGTCTCAAGATCGAAATTCTCCTGCCCCCCATAAATTAACCCCACAGCTCGTGTAGTCGTGTGCTTTAATTACTTTATTTGCATCTACTGATCATGATCTTTCTCTTTGTGCTAACTATACATGTTAGTAGCTGGTATTGTATGATGTTAATGGCCTGAATGAGAATGAATGAACTGTTAACCGGAAAAAAAAAAAAAAAAAAAA (31) SEQ ID No.31 information: (a) SEQUENCE CHARACTERISTICS:
Length: 335 bases
Type: nucleic acid
Chain: strand
The initial source of topological structure: line style (b) molecule type: cDNA (c): paddy rice (d) sequence description: the information of SEQ ID No.31:CCCCTGTGAGACGATGGATAGACCCTCCCTACGATAGCCCCGACCCGATA CCTCGTGCTTACGTTCTACTAGTAAGATCAATTGCCGTGAATCGTGCCAAAGTAAA ACTGTCAAAACTATTATTCTTTGGTGATGAAGGAACCTTCCAGGGTTTATGTTCCA GAGCAACTAACACATTCATTGAACTGCATGTCCCGCCAGCAATCGCCAACATCTTG TTTCCTCTGGATAGATTGTTGAATTCTCAAAGCATGTTGGAGTACACGCTCTGTTT GCTACTCGTAATTTATGTTATTGATATGATTGGTATTTGATGTCAAAAAAAAAAAA AAAAA (32) SEQ ID No.32: (a) sequence signature:
Length: 528 bases
Type: nucleic acid
Chain: strand
Topology: linear (b) MOLECULE TYPE: cDNA (c) the original source: rice (d) SEQUENCE DESCRIPTION: SEQ ID No.32: CACCCAACACAATCGGTTTTTTACTTTTGATTCATCCAAATCCCTCACCAGATGCTAGTAACCAAAGGTATACCAAGTTGAAATTTGAGATACCACAAGAGACGGGATCATCCTTGTGCACGGATTTGCTGGATATTTTGATCCGTATTGTATAAAGATGTTCATCTTGGAATTGAACCCAACACGGCTACACCAACATGTTTAGCTGGTTCCCGATCTTCTTCCCACTTGAGAAAGCCCATCTACGTACCGTCGAAGACGCCTATAGAAGTGCACTTTTGGCGATGCTGCGGTGCACAAGGTGTGGTACGAGTGGGCTGTGACGACACCTTCTCCATCACCAATCCATAACAGCATGGTCGATCATATTGGGTCGGCCTATAAGTAAAGCCATGAAGCCAGTTTTGTTTTGTTCCGATTTTCTTTTTAGGGATTCTTTTTGTTGTCTTTTGAAAGAGAGGAGAGAACAGATTCCCTTGTATGGTTTCTTGTGTGGAGTGACTCTTTATCAGAAAAAAAAAAAAAAAA (33) SEQ ID No.33 information: (a) SEQUENCE CHARACTERISTICS:
Length: 509 bases
Type: nucleic acid
Chain: strand
Topology: linear (b) MOLECULE TYPE: cDNA (c) the original source: rice (d) SEQUENCE DESCRIPTION: SEQ ID No.33: CGGACCATATCAGGGAACTTCAAGGTGCCCTGTTAAGGGTTCCCAGTGTTTCTGATGACTGCCGTAGAAGAATTGCAAGGACCAGTCCCTCTTCTTCGAAGAATGCGAAAAGCAGGCCTGGAAGTACAGCATCTGGGCGCTCTTGTGTACCTCATCTACACCAAGCAGTAGCGAAAATCCACGTGGATCATCATTAGGGTTAGATTGCTCAAATGGCACAGACAAGGCATAAATTCAGTCACAAGCCAGTAAAATGGAATTTTCTCAAATGGCAAAGAGGAAGGCCTAAATTCAGTCACACGCCAGTAAAATGGAAAGGAAACATGGATTTTTTGGTAGAGCATGAAACTGGTATTTCGTCTTATTTTCCGTTGACATTAGTTTTGACCGAGAATTTATCTTCTATACACCCCTTGTCGCTGATGGGTTTATACTGCTTTCCTGTACACATTCTTATATGTGGAGAAATGGTGAAACACTGAAATGCTATAAAAAAAAAAAAAAAAAAA (34) SEQ ID No.34 information: (a) SEQUENCE CHARACTERISTICS:
Length: 435 bases
Type: nucleic acid
Chain: strand
The initial source of topological structure: line style (b) molecule type: cDNA (c): paddy rice (d) sequence description: the information of SEQ ID No.34:GGGTCGACCCACGCGTCCGGGAGTGTGCCCTTGGTATACTCCGAAACCAT CCTCGAGTAGCCAAGTTCGAAGACGAGAGCCCTCTCAACTACGGCTGCACCGTCGC CTACATCGAATAAGCACATTATACGGCTTCATCGAAAACTTATGGCAAAGATCGTC TTATGCACACTTGCACGATACTAGCTGGATTATACAGGATTGTATGCCACGTGAGA TGAAATTTTGAAGCCGTATGGTTGCCATGTGACAACTGATTTGGACAAGGTGGCCC AGGAACTAATGGAGCTTGGAGCTGATCTGTGCGCTGATACATGCACAATGGTGGCA TTCAAGATTAGCCTGTGAGTACGAATTCTTGCATGTGTTACCTTTGACTTCTTAAT CCATGGCAGATATATGCATAGTTTTGTACAAAAAAAAAAAAAAAAAAAA (35) SEQ ID No.35: (a) sequence signature:
Length: 390 bases
Type: nucleic acid
Chain: strand
The initial source of topological structure: line style (b) molecule type: cDNA (c): paddy rice (d) sequence description: the information of SEQ ID No.35:TGGGGGAGTTTCCCGTCTCCGCATGTCGCCTACGTCGACGGCCGGCTCTG CCGCCACATACCCAACCCCATCGCCAGGAGAATCGTCAGCGGCTTCCTCTTGAGCT TCATTGACAGCAGAGACACGATCTAGGCAAGTGGTCCTTTGCTCATACATAGCACT CGGTGAATGTACAAGTTGTGTATATGCTAGCCCACACATTGCTCACTGCCATACTT GTAATTTACTCTTTTCTTTTCGATTACATCTTTTTTTTCGATTACATGAAAGACAC GTGTACATACGTAATGTAACGTTGTACAGCTATTTTGACCGCGGTAGAAAGGAATG GGGAAGTAAATAAGATCAGGAAACCCCCATTTCACTTTTTATTAAAAAAAAAAAAA AAAA (36) SEQ ID No.36: (a) sequence signature:
Length: 285 bases
Type: nucleic acid
Chain: strand
The initial source of topological structure: line style (b) molecule type: cDNA (c): paddy rice (d) sequence description: the information of SEQ ID No.36:GCTCGGCTCAGTATGTTTGTGTGGGAATTGGTGACGCGGAATAACAAATG TGCAACACAGGGAAACAGCTATGGACCAATGGATTACCCCACAGCTCTGAATGACG ACTCACTATAGGAAACTGGTACCCTGCAGGTACCGGTCCGGAATTCCCGGTCGACC CACGCGTCCAGGTACTCCTTGTATCTTTTGTTTTATATCACAAGGTGGACCATAAT AATTTCTTGTAGAGATACAATTATACATAATAGACAACAATGGTTCTTTCTAAAAA AAAAAAAAAAA (37) SEQ ID No.37: (a) sequence signature:
Length: 490 bases
Type: nucleic acid
Chain: strand
Topology: linear (b) MOLECULE TYPE: cDNA (c) the original source: rice (d) SEQUENCE DESCRIPTION: SEQ ID No.37: CCTGGTTGTTGGCGACTTGGCTCTTTTGGCTCTCCTGGCAGTACACGGATTGCGAGACACATTTACTAGCATATTTAGAAGCCCAGGTGACATGAACTTGAAGGACGAAGAGGTTCCAGTCAGAATACAAAGAGCATGAACGACATTCTCTTCAGAGCTATCACTATATTGCAATCACCTGCTTTTAAGTTTGCGTAAGTGGTTACATACTAATTTACCTTTTCCCCGACCCACCTGTAATATATAATCCACCATTTTGGTTCAGGAGTACAGCACTAGTGCTTCTGTAGGATTAAGTCCATTGAGCAAATGATCCCCGGTAATTTTGTAGAAAATGAGAAACCGTTGTGAACTGTACAGAATTTTGCTGGCAGCTTGGTGTATATGAAAGATGGGTTTTTTTCTTATCTGTAGATGAACATCCATGCCCATGATTTATCTATCCAGCAGACAGGTTCCATATTTTAGCTACTTAAAAAAAAAAAAAAAA (38) SEQ ID No.38 information: (a) SEQUENCE CHARACTERISTICS:
Length: 315 bases
Type: nucleic acid
Chain: strand
The initial source of topological structure: line style (b) molecule type: cDNA (c): paddy rice (d) sequence description: the information of SEQ ID No.38:TTGAAAGCTATTGATGGAGGCACAGTACAAGATTCATATGAGATTGCATT TGATGCATCACACACAGAATGCTGTCAGTGGGCAGTCAGGTTCTGAACATTTGGAC ACAAGCAGTTCAGCATGCACAGCACTGATGAAGCTAGCAAGCACTAGCAACACAAA GACACAATATATTTCAGCATCTCTTACAATAAACCCATGCAGTTTTCATGACATCA CTGGGTGAGAGTCATGAACAAGTGTAACTCTAGATTGATCAAATTTACTGATTATC ATTTGAAAATATTTGCCATGGAAAAAAAAAAAAAAAAAAAA (39) SEQ ID No.39: (a) sequence signature:
Length: 325 bases
Type: nucleic acid
Chain: strand
The initial source of topological structure: line style (b) molecule type: cDNA (c): paddy rice (d) sequence description: the information of SEQ ID No.39:AAGTCACACGTGCACCAGGAGCTGGGGAGGCTGGCAGGCAGATATTCCAG GGCTTCACTGGGAGCATCCAGACAGTTTCTCACGTGCAAACAGGCACACATTCATG GGAGTGTCTCACCAAGCAGGCTTCAGGTGAATCAGGCACAACAACCAAAATCAGTC AGCCCATCAATTCATTTCATGTAGCCATTGTACTTCCAGATGTGAATTCGTGTGCA GAGTATTGTTGTTGTTGCTGGCTGTGTGTATTGAACAGGGGGCCCTCATTTGGGCC TGGTGGAACCACTAATGTCAAGGTCCTTTCTATCGCAAAAAAAAAAAAAAA (40) SEQ ID No.40: (a) sequence signature:
Length: 230 bases
Type: nucleic acid
Chain: strand
Topological framework: line style, (b) molecule type: cDNA, (c) initial source: paddy rice, (d) sequence description: SEQ ID No.40:GCTTGCGAAAAGCACGGTTGGTGAAATTCCCTGATTGTGATGTAGTGGCG CTTGGTTTGGTTTGTTTGGAGGGCTGGGAAATTGACATCATGGTTTTTGAGTTGTC TATTATTACGTTATTACCAGGATATGGCGTCTGATTTTTTAAAAAACTTCATGCAA CTTGATACAGATTTCATGACATATACAATGAAACAGTATAATGTTGTGGCTCAAAA AAAAAAAAAAAA, (41) information of SEQ ID No.41:, (a) sequence signature:
Length: 185 bases
Type: nucleic acid
Chain: strand
Topological framework: line style, (b) molecule type: cDNA, (c) initial source: paddy rice, (d) sequence description: SEQ ID No.41:TGTTGCGTTCGCTCTAGGGACACAGAGATTGCGCCACGACCACACCACAT AGAGGCCTCTTGGACATCTTGGCCGAGCTTCGATTCGCCTGCTACGCCGCTAGATA CGGTTCTGTACCACGTTGTTCGTTGTAAATCCCTTGTCCAACTTTGAGACAACCTC GCCAAAAAAATAATAAAAAAAAA, (42) information of SEQ ID No.42:, (a) sequence signature:
Length: 482 bases
Type: nucleic acid
Chain: strand
Topology: linear (b) MOLECULE TYPE: cDNA (c) the original source: rice (d) SEQUENCE DESCRIPTION: SEQ ID No.42: GTATAGGATTTGCAGGGGATTGCCGCAGTTATGGGCTGTCTATAAATGCTTTGTAGAGGTCAATCAGACAAGCTTCCTGTTCTCCCTCTACTGCTGTTGAAGTGAATTGGCAATATTGGTTGCATGGTTGTTTCATATATCAAAACACTGACTATTGCAAAGCCAGACAGGGGAAAAGTTGTCTGAACAAACATGCAAGAGTTGCCAGTATGCTCAGCAGTGCTTGGGGCAAGTAATTTGAGGCAGAAAATGGAGCACAAGCAGCACTTGAACTCTTGCACAGTCAGTGATTCAGCATTTCTGTACAGGCACTGGGAGAAACACAATGAATATTTAACTGTATGTGCAAAATGTGAGAAGCTTGTTTTCGCCATTGTCCACTCAAGAAGCAATGTCCATTTCATGTACAGGATAGAGTGATATCAAGTGTTCTATTAATAGAAAAAAAAAAGTCTTTCTTGATCAAAAAAAAAAAAAAAAAA (43) SEQ ID No.43 information: (a) SEQUENCE CHARACTERISTICS:
Length: 330 bases
Type: nucleic acid
Chain: strand
The initial source of topological structure: line style (b) molecule type: cDNA (c): paddy rice (d) sequence description: the information of SEQ ID No.43:GGTCCAATGACCTGGTTCCAGCACAATGACATTTGTGCACTGGATGCTTG ACACAGTGGTGTGTGGGGCATTGGCATGTGCCAATGGTGCAAGCACAGATGATGCA ATGTGACAGCAATGCAAGTGGTGTTGAGGTGACAGCAGTTTTGGAGGTGAGGTGTG ACAAAATGAAATGAAATTGGATGCATTCACACAGAACAGTGGGACTAAGTTGAAGA CTTGAAGTTGATAGGTCGAGTGTGTGGGAGTGGTGCACAAATGGATGAAAGGGTGG GCATTGGCATGATGTTGCATGGTGGCATGTTAAATCAAAAAAAAAAAAAAAAAAAA (44) SEQ ID No.44: (a) sequence signature:
Length: 190 bases
Type: nucleic acid
Chain: strand
Topological framework: line style, (b) molecule type: cDNA, (c) initial source: paddy rice, (d) sequence description: SEQ ID No.44:TGCTGAGTGTTGAATTTATGTGGATCTGATGTGGTGGATGCATGGTGGAG TGATGTGCACAATTTTGTGGGGAGGGGGTGAAACTGAAATCACCTGTCCATGCACA TCCATGACTTGTAGCTTTCACTCCCCACTGTTCATGATATGATATGATGTGGTCTT CAGTTCCCAAAAAAAAAAAAAAAAAAAA, (45) information of SEQ ID No.45:, (a) sequence signature:
Length: 499 bases
Type: nucleic acid
Chain: strand
Topology: linear (b) MOLECULE TYPE: cDNA (c) the original source: rice (d) SEQUENCE DESCRIPTION: SEQ ID No.45: GGCCGGTCCTATTTCCCGATGGAGGAGCCGGGAAGAAGGAAGGGTACATGGTAACGAGAGAAGGGAAGAAGGGCACCGGGCCGGTGTACGTGAAAGGCGAGAACGGCGGCATTGTGGCCAAGGTCTGCGTGTTCAAGATCGCCGACGCGGTGTCCAGTCGTCGAGGTGGTGAAAGGCTACGGCGCCGAGGCCGCCCCGGTTCTGGAAGGCCAGGCTCGAGCCGGCGATGAAGCCTCCGGCAGCCATCTGAGCTGCCGACGAGAGGGTGACTGGTTCGTTGCCGCGTGCTTGCACAAATTGCACATCGAGATTTGTTCTTGTGTTGTTCAGTGTAACCGTGTGAGTGATGTCTCCCGTCGGCGAATTGTTTGGGTTTTTTTGGGATGTATTTGTTCATGGACGGCGTCATGGAGGTGGTATGTAAGCCCGATTTGGTGATGTCTGGGCTGGAAAATAAGAGGCCAAAAATTCCCTGCTCCAAAAAAAAAAAAAAAAAAAA (46) SEQ ID No.46 information: (a) SEQUENCE CHARACTERISTICS:
Length: 518 bases
Type: nucleic acid
Chain: strand
Topology: linear (b) MOLECULE TYPE: cDNA (c) the original source: rice (d) SEQUENCE DESCRIPTION: SEQ ID No.46: ACATCCCTAACACAGCTACGACATCACCAAAAGCTGAGGATGTTGCGAAGAATTTACGATTAAAATTCTTGAAGAAAAATGGTGGTTTGTTAAAGATGGAAGGATCAAACCACGGAAGGAAAGGTGTAATGTCCATCAATGCTGAAATATTTCAGATCACACCAGATTTTCATTTAGTGGAATTTACGAAGATAAATGGTGATACACTTGAGTATCAAAAGGTCAAACACAGAGATGAGACCAGCACTAAAGGATATTGTATGGGCTTGGCAAGGTGAGCAGCCACAACCACATCACTTGAACGAACAGTCTTAATGTTAAATATTTTGACACAGTGAAATGACAGTAGAGATTGTGGCATGTGTTGATGTGTTGTATGTGCTATTAGTAATCAATAATGTACTTTTCTAAAAAAATTTGTCATTTGATTTTTCATTATCATGTGTTCAGTATGAAACGATAATTGTATTGACCATTTAATTGAAAACATGTTTTATTCAAAAAAAAAAAAAAAAAAA (47) SEQ ID No.47 information: (a) SEQUENCE CHARACTERISTICS:
Length: 273 bases
Type: nucleic acid
Chain: strand
The initial source of topological structure: line style (b) molecule type: cDNA (c): paddy rice (d) sequence description: the information of SEQ ID No.47:CGGACGCGTGGGCTGATCAAGCAGACAGCAGATGCAAACTGGGCATTGTA GAGTAGCAGCATGGCCTTCTGTTTTCAGATGGCAAGTTGTGCTAACCTGGAGAGAT CTGAATGTTCAGAGAGTAACACATCCTTTTCTCCTTTTTTGGTAGTATCAAGCAGC TGGATGATGATTTCATTCAGCCTTATCATGAATAGGGCTTAGTTAGTGTATTATCT GGAACATCATTTAGCAGAATAATTGATCAGTTAGCTTTAAAAAAAAAAAAAAAAA (48) SEQ ID No.48: (a) sequence signature:
Length: 594 bases
Type: nucleic acid
Chain: strand
Topology: linear (b) MOLECULE TYPE: cDNA (c) the original source: rice (d) SEQUENCE DESCRIPTION: SEQ ID No.48: GCTATACCATCCAGTTACCCGCCTGATTCTTAGTACCATGCCTTGAAACTCCCCACAACCCTGGGTTCCTGGCTACTCCCGTTCAGCTTCTTTGCCTGATAGAATATCAAGAAACCTGCACAACAATGGAACCTGTGCAGGACCCGTTTAGGGTTATGTCGAACTCGGAAGTAAGAGGACCACTTGCCCTTGGTAGCTTCACTTTGTATGATAAAGCTTCAAGTAATCAGGACAGTTATCTGAGGATCCTTCATCTGCCGCAAAAATTTGCACAATTGGGACTTTAAGAATGCACAAGACCCTTGCATTCCCCCCGCCCGTAAAGTGGTGTGGATTTGACAACGCAACATCCCTGTTCCTCGTGTTGTGGGTAAAATTCCGTGGTGAATGCAAAAACATAAGGCTTGGAAAATGGCCCTGTTTGTATCCTCAAGGTGGCTTTGGAACTGTAAATTGATATAAGCTCTATGATCCTTAGCTAACAGTTAGTAAACGTGCAAAAAAAAGTGTGGAGGTATACCCAAAGATGTACCCAAAAGGGTGAAATAAGGGGAATAAATGCATATTTTGGGTCAAAAAAAAAAAAAAAAAAAA (49) SEQ ID No.49 information: (a) SEQUENCE CHARACTERISTICS:
Length: 507 bases
Type: nucleic acid
Chain: strand
Topology: linear (b) MOLECULE TYPE: cDNA (c) the original source: Rice (d) SEQUENCE DESCRIPTION: SEQ ID No.49: AGAGCCAGGATCATTTAGCCGAGCAAACACCACCAAGTGCTCCCCAACGCATCACCTTGTACCGACACCACCTGGGCCTATATCCCCAGTTTTTCGATACCTTCTAGGGGCATGAGAACATCAGGTATTTCAGATGGTAAAGAGACAGAAGATCTTCAGGATAAAGGGCCTGCCAGAATGAGCCTTTCTAGTCTTCCTTCAGCACAAACATCGTTGGAGGATCATCGGCCATTGTCAGGAGCTACCGAGTCAGTTAGCAAAACATAGGAATATTTGGTGTTGAGGTGAAAGTTTATTTATCAAGGGGCTCAGCTATCTCGCCATGGAAGAATATTGTACATATTAGTATGTGAACTCGGCCAATATTGCAAAATTAGTTGGTGTTTCGTTTGTATCCCCCATGGTTAAGATGTAATTGTGCAAATAACGAGTTGTGGAATAAAATCTCCATTTTTCTCTCCGATTAATTGATGTAAGATTTGTTTGTTGTCAAAAAAAAAAAAAAAA (50) SEQ ID No.50 information: (a) SEQUENCE CHARACTERISTICS:
Length: 552 bases
Type: nucleic acid
Chain: strand
Topology: linear (b) MOLECULE TYPE: cDNA (c) the original source: Rice (d) SEQUENCE DESCRIPTION: SEQ ID No.50:
Claims (10)
1. the sequence of isolated paddy endosperm cDNA expressed sequence tag is characterized in that: the cDNA sequence has the sequence shown in SEQ ID No.1～SEQ ID No.50.
2. according to the sequence of the described isolated paddy endosperm cDNA expressed sequence tag of claim 1, it is characterized in that: the cDNA sequence has one or several the combination in the sequence shown in SEQ ID No.1～SEQ ID No.50.
3. according to the sequence of the described isolated paddy endosperm cDNA expressed sequence tag of claim 1, it is characterized in that: said cDNA sequence comprises the complementary sequence or the homologous sequence of every sequence in the sequence shown in SEQ ID No.1～SEQ ID No.50.
4. according to the sequence of the described isolated paddy endosperm cDNA expressed sequence tag of claim 1, it is characterized in that: said cDNA sequence comprises sequence or its complementary sequence that 8～100 continuous nucleotides in every sequence shown in SEQ ID No.1～SEQ ID No.50 are probe.
5. a biochip of being made up of claim 1 or 2 or 3 or 4 described sequence labels is characterized in that: the nucleic acid molecule that is combined with sequence, homologous sequence or its complementary sequence shown in SEQ ID No.1～SEQ ID No.50 on carrier.
6. the biochip of a kind of expressed sequence tag according to claim 5, it is characterized in that: said carrier is solid phase carrier or liquid phase carrier.
7. the biochip of a kind of expressed sequence tag according to claim 6, it is characterized in that: said solid phase carrier is slide, silicon chip, nylon membrane, nitrocellulose membrane, gel.
8. the biochip of a kind of expressed sequence tag according to claim 5, it is characterized in that: said nucleic acid molecule is thymus nucleic acid, Yeast Nucleic Acid and poly oligonucleotide.
9. the biochip of a kind of expressed sequence tag according to claim 5 is characterized in that: be used for the research and the detection of biological function.
10. the biochip of a kind of expressed sequence tag according to claim 9, it is characterized in that: said biology comprises animal, plant and their cell, histoorgan and system thereof; The research of said biological function comprises the mechanism of screening, animal and plant growth and growth of the generation of resistance, plant breeding and the new variety of plant of medicine, vaccine, plant, heterotic early prediction, new herbicides and novel agrochemical and the toxicology of medicine; The detection of said biological function comprises the evaluation of the detection of functional assessment, pathogenic agent of security detection, the food composition of transgenic plant and diagnosis, living species, comprises animals and plants and microorganism.
Priority Applications (1)
| Application Number | Priority Date | Filing Date | Title |
|---|---|---|---|
| CN 01135868 CN1364923A (en) | 2001-10-31 | 2001-10-31 | New rice leaf expression sequence labels and biochip |
Applications Claiming Priority (1)
| Application Number | Priority Date | Filing Date | Title |
|---|---|---|---|
| CN 01135868 CN1364923A (en) | 2001-10-31 | 2001-10-31 | New rice leaf expression sequence labels and biochip |
Publications (1)
| Publication Number | Publication Date |
|---|---|
| CN1364923A true CN1364923A (en) | 2002-08-21 |
Family
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Family Applications (1)
| Application Number | Title | Priority Date | Filing Date |
|---|---|---|---|
| CN 01135868 Pending CN1364923A (en) | 2001-10-31 | 2001-10-31 | New rice leaf expression sequence labels and biochip |
Country Status (1)
| Country | Link |
|---|---|
| CN (1) | CN1364923A (en) |
Cited By (1)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| CN106939307A (en) * | 2016-01-05 | 2017-07-11 | 复旦大学 | Paddy rice nucleotide fragments HAL and the expression vector containing the fragment and application |
-
2001
- 2001-10-31 CN CN 01135868 patent/CN1364923A/en active Pending
Cited By (2)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| CN106939307A (en) * | 2016-01-05 | 2017-07-11 | 复旦大学 | Paddy rice nucleotide fragments HAL and the expression vector containing the fragment and application |
| CN106939307B (en) * | 2016-01-05 | 2020-09-01 | 复旦大学 | Rice nucleotide fragment HAL, expression vector containing same and application |
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