CN117721090A - Application of OsCRK13 gene in controlling low temperature resistance of rice - Google Patents
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Abstract
The invention belongs to the technical field of plant genetic engineering and disclosesOsCRK13The application of the gene in controlling the low temperature resistance of rice. The invention obtains the rice capable of improving the low temperature tolerance capability through separation, cloning and functional verificationOsCRK13And (3) a gene. The nucleotide sequence of the OsCRK13 gene is shown as SEQ ID NO.1, and the protein sequence encoded by the gene is shown as SEQ ID NO. 2. The invention clones to control rice low temperature response gene OsCRK13, and carries out CRISPR mutant phenotype identification to candidate genes, and the seedling stage low temperature stress phenotype identification shows that when the gene fragment is deleted, water is usedThe low temperature stress resistance of rice is reduced, and the functions and application ways of the gene are proved.
Description
Technical Field
The invention belongs to the technical field of plant genetic engineering, and particularly relates to application of an OsCRK13 gene in controlling low temperature resistance of rice. The invention adopts a candidate gene screening method to clone to the low temperature resistant gene OsCRK13 of the control rice. The CRISPR technology is used for constructing an oscrk13 mutant, and co-segregation detection shows that the oscrk13 mutant is closely related to a low-temperature sensitive phenotype, and the function and the application way of the gene are proved.
Background
Plants are affected by a plurality of environmental factors in the growth process, drought, cold injury and high temperature can lead to large-scale yield reduction of crops, and the plants are bottlenecks of agricultural development in many areas. Cultivation of stress-tolerant crop varieties has always been one of the main objectives of agricultural science and technology research. To combat or accommodate these adverse factors, plant bodies sense changes in extracellular environmental conditions and deliver them into cells through a variety of pathways, inducing expression of a number of response genes, producing a number of functional proteins and osmoregulating substances that protect cells from drought, high salt, low temperature, etc. stresses to adapt to adverse growth conditions (Xiong et al, cell signaling during cold, plant cell.14 (suppl), S165-S183, 2002). And whether the functional genes can be correctly expressed in the process of reacting to the environment is finely regulated by the regulatory factors. The transcription factor is used as a regulating gene, and can regulate the expression of a series of downstream genes when organisms feel adversity stress, so that the tolerance of plants to adversity is enhanced, and the effect of resisting adverse environmental condition stress is achieved. Most types of transcription factors are involved in Plant abiotic stress response reactions, including AP2/EREBP, bZip, HD-ZIP, MYB, MYC, NAC, and Zinc finger-like transcription factors (Yamaguch i-Shinozaki K, shinozaki K. Transient regulatory networks in cellular responses and tolerance to de hydration and cold stress. Annu Rev Plant Biol,2006, 57:781-803). Through genetic engineering, partial stress response transcription factors have been successfully applied to rice stress-tolerant genetic breeding. Transgenic rice plants cultivated by SNAC1 can improve the fruiting rate by about 30% under drought environment of a field, and the yield is not affected and has no other phenotype change under normal conditions. Transgenic plants also have significantly increased drought and high salt resistance during vegetative growth (Hu et al, overexpressing a NAM, ATAF, and CUC (NAC) transcription factor enh ances drought resistance and salt tolerance in service. Proc Natl Acad Sci U S A,2006, 103:12987-12992). These antiretrons function by regulating the expression of a number of downstream genes. These downstream genes often contain regulatory proteins involved in signal transduction and gene expression, which in turn form a secondary regulatory network. These downstream genes can likewise be used for genetic improvement of crop stress resistance. The HsfA3 gene downstream of the transcription factor DREB2A in Arabidopsis can also increase the resistance of transgenic overexpressing plants to high temperatures (Yoshida et al Functional analysis of an Arabidopsis heat-shock transcription factor HsfA3 in the tr anscriptional cascade downstream of the DREB A stress-regulator system. Biochemi Biophys Res Comm un,2008, 368:515-21).
The plants respond to the external environment timely and accurately, and besides related transcription factors, a plurality of other regulatory factors participate in the sensing and transmission of stress signals. Protein kinases and protein phosphatases mediate protein reversible phosphorylation, which is one of the important events that occur during signal transduction. In phosphorylation, protein kinases add a phosphate group to a substrate; whereas protein kinases perform the opposite function by removing the phosphate groups of the substrate. The addition or removal of a phosphate group to an enzyme generally results in the activation or deactivation of the enzyme, and in this way, protein kinases and protein phosphatases play an important role in the regulation of the activity of the enzyme and thus the biological processes in which the enzyme is involved. Receptor-like protein kinases (RLKs), which are transmembrane proteins containing an amino-terminal extracellular domain and a carboxy-terminal intracellular kinase domain, bind to a signal molecule through their extracellular domain, activate the intracellular kinase domain, and thereby complete signal transduction. Wherein the extracellular domain of cysteine-rich receptor kinases (CRKs) contains one or two DUF26 domains, containing three conserved cysteine residues C-X8-C-X2-C. Arabidopsis contains 46 CRKs and plays an important role in the regulation of plant growth, stomatal response, hormonal responses, pathogen defense, and biotic and abiotic stress. The OsCRK13 gene belongs to the rice CRKs family, and no rice CRKs related to abiotic stress response are reported at present.
Rice is an important grain crop and model plant, and the cultivation of the rice with enhanced stress resistance has important significance in the present day of frequent extreme climate conditions. In view of the fact that the OsCRK13 gene is a receptor-like kinase rich in cysteine, whether the stress resistance of rice can be improved or not is not reported at present. Therefore, the OsCRK13 gene is separated from rice, and the functions of the OsCRK13 gene in improving the stress resistance of the rice are identified, so that the OsCRK13 gene has very important significance for cultivating new varieties of stress-resistant rice.
Disclosure of Invention
The invention aims to provide an application of an OsCRK13 gene in rice in controlling low temperature resistance of the rice, and protein coded by the OsCRK13 gene is shown as SEQ ID NO. 2.
The invention further aims at providing an application of the OsCRK13 gene in the rice in the creation of low-temperature resistant rice, wherein the protein coded by the OsCRK13 gene is shown as SEQ ID NO. 2.
In order to achieve the above object, the present invention adopts the following technical measures:
by adopting a candidate gene screening method, the applicant clones a gene OsCRK13 for controlling low temperature resistance of rice, and the gene belongs to CRKs protein family. The functional deficiency of the gene can lead to the weakening of the low temperature resistance of rice under the low temperature condition, the protein coded by the gene is shown as SEQ ID NO.2, and one of the genes coded by the gene is shown as SEQ ID NO. 1.
The protection scope of the invention comprises:
application of OsCRK13 gene in rice in controlling low temperature resistance of rice, wherein protein coded by the OsCRK13 gene is shown in SEQ ID NO. 2;
the application is specifically as follows:
improving the low temperature resistance of the rice by improving the expression level of the OsCRK13 gene in the rice;
reducing the expression level of the OsCRK13 gene in the rice to weaken the low temperature resistance of the rice;
knocking out, inhibiting or silencing the OsCRK13 gene in rice to weaken low temperature resistance of the rice.
In the above application, preferably, the knockout uses a CRISPR/Cas9 system in which the target site of the gRNA is ATCTCCTCCTTCTGTAACAC.
In the application, the rice with reduced low temperature resistance edited by the CRISPR/Cas9 system has the polynucleotide shown as SEQ ID NO.3 or SEQ ID NO. 4.
Application of OsCRK13 gene in rice in low temperature resistant rice creation, wherein the application is specifically as follows: introducing a substance for increasing the expression level of OsCRK13 gene in rice into rice;
preferably, the substance is a nucleic acid molecule containing the OsCRK13 gene, or an expression cassette, recombinant vector, recombinant microorganism thereof;
the OsCRK13 gene is shown in SEQ ID NO. 1.
Compared with the prior art, the invention has the following advantages:
the applicant discloses for the first time that the OsCRK13 gene of rice is related to low temperature resistance of rice, and the gene can transform various plants including rice and is used for cultivating new varieties of low temperature resistant plants.
Drawings
FIG. 1 is a graph showing the editing of rice oscrk13 CRISPR mutant genes;
oscank 13-8 and oscank 13-41 are 2 oscank 13 CRISPR mutants homozygous for Cas 9-free families.
FIG. 2 is a rice oscrk13 CRISPR mutant seedling stage low temperature stress phenotype;
wherein: oscrk13-8 and oscrk13-41 are 2 oscrk13 CRISPR mutants homozygous for Cas 9-free family, medium flower 11 (ZH 11) as control. Panel A shows the growth state of the oscank 13-8 and oscank 13-41 families before low temperature treatment; panel B shows the growth state of the oscank 13-8 and oscank 13-41 families after recovery from the low temperature treatment.
FIG. 3 is a statistical schematic of rice oscrk13 CRISPR mutant seedling stage low temperature stress survival rate;
wherein: oscrk13-8 and oscrk13-41 are 2 oscrk13 CRISPR mutants homozygous for Cas 9-free family, medium flower 11 (ZH 11) as control.
Detailed Description
The following examples define the present invention and describe the method of the present invention in constructing OsCRK13 CRISPR mutants, cloning DNA fragments comprising the complete coding segment of the OsCRK13 gene, and validating the function of the OsCRK13 gene. From the following description and examples, one skilled in the art can ascertain the essential characteristics of this invention, and without departing from the spirit and scope thereof, can make various changes and modifications of the invention to adapt it to various usages and conditions.
Example 1: isolation and cloning of OsCRK13 Gene
Primers OsCRK13-FL-F (5'-ATGCTT GTCCTCTTGCTCCT-3') and OsCRK13-FL-R (5'-CTATCTGCCGTCCTCCTCCA-3') were designed according to Rice Gene database Rice Data (http:// www.ricedata.cn/gene /). The CDS sequence (with the sequence shown as SEQ ID NO. 1) encoded by the OsCRK13 gene is amplified by using the rice variety Japanese sunny leaf cDNA as a template and using primers OsCRK13-FL-F and OsCRK 13-FL-R. The PCR reaction conditions were: pre-denaturation at 95℃for 3min;94℃30sec,55℃30sec,72℃2min,33 cycles. The amplified PCR product was ligated into pGEM-T Easy vector (purchased from Promega) by TA cloning, positive clones were selected and confirmed by sequencing to obtain the CDS sequence of OsCRK13 (shown in SEQ ID NO. 1).
The applicant designated this clone as pGEM OsCRK13 plasmid from which a DNA fragment of the complete coding region of the OsCRK13 gene was obtained.
Example 2: construction of OsCRK13 Gene overexpression vector
The positive clone pGEM-OsCRK13 plasmid obtained in example 1 was amplified with primers OsCRK13-OE-F (5'-tacgaacgatagccggtacc ATGCTTGTCCTCTTGCTCCT-3') and OsCRK13-OE-R (5'-ttgcggactctagaggatccCTATCTGCCGTCCTCCTC CA-3') to obtain a DNA fragment containing the complete coding region of the OsCRK13 gene under the following PCR conditions: pre-denaturation at 94℃for 3min;94℃30sec,55℃30sec,72℃2min,30 cycles. The PCR product obtained was ligated into pU1301 vector digested with restriction enzymes KpnI and BamHI by Gibson Assembly method, and the vector was confirmed by sequencing, finally obtaining Os CRK13 gene over-expression vector for genetic transformation.
Example 3: construction of oscrk13 CRISPR mutants
The gene sequence of the OsCRK13 gene was obtained from Rice gene database Rice Data (http:// www.ricedata.cn/gene /). A target site was picked according to CRISPR-P v 2.0.0 (http:// CRISPR. Hzau. Edu. Cn/CRISPR2 /). The construction of vectors for CRISPR mutant lines can be found in the relevant literature (and Jade et al, programmed self-elimination of the CRISPR/Cas9 construct greatly accelerates the isolation of edited and transgene-free plant. Mol. Plant.2018, 05.005.) and is not described further herein, the CRISPR vector obtained is OsCRK13-CRISPR. Wherein the target sites selected in the CRISPR-P v2.0 website are as follows:
target site: ATCTCCTCCTTCTGTAACAC.
The constructed CRISPR carrier OsCRK13-CRISPR is transferred into the flower 11 of the rice variety by an agrobacterium-mediated rice genetic transformation method, and transgenic plants are obtained through preculture, infection, co-culture, screening of calli, differentiation, rooting, seedling training and transplanting with hygromycin resistance. The agrobacterium-mediated genetic transformation method (system) of rice (Zhonghua 11) described above was modified on the basis of the method reported by Hiei et al (Hiei et al, efficient transformation of rice, oryza sativa l., mediated by Agrobacterium and sequence analysis of the boundaries of the T-DNA, plant J,6:271-282, 1994) (see transformation steps below).
The specific genetic transformation procedure of this example is as follows:
(1) Electric conversion: the final CRISPR target vector OsCRK13-CRISPR was electrotransformed into agrobacterium EHA105 strain with 1800v voltage, plated onto LA medium with corresponding resistance selection and positive clones were screened for transformation calli as described below.
(2) Callus induction: flowers 11 of mature rice seeds were dehulled and then sequentially treated with 70% ethanol for 1 minute, 0.15% mercuric chloride (HgCl) 2 ) Seed surface disinfection for 15 minutes; washing the seeds with sterilized water for 4-5 times; placing the sterilized seed on an induction medium; the inoculated callus induction medium is placed in a dark place for 4 weeks at 25+/-1 ℃.
(3) And (3) callus subculture: the embryogenic callus, which is bright yellow, compact and relatively dry, was selected and placed on a secondary medium for 2 weeks in the dark at 25.+ -. 1 ℃.
(4) Pre-culturing: compact and relatively dry embryogenic callus was selected and placed on a preculture medium for 2 weeks in the dark at 25.+ -. 1 ℃.
(5) Culturing agrobacterium: pre-culturing agrobacterium EHA105 (derived from CAMBIA, commercial strain, carrying CRISPR vector OsCRK13-CRISPR of the invention) on LA medium with corresponding resistance selection for two days at 28 ℃; the agrobacterium is transferred to a suspension medium and cultured on a shaker at 28 ℃ for 2-3 hours.
(6) Infection with agrobacterium: transferring the pre-cultured calli into sterilized bottles; regulation of Agrobacterium suspension to OD 600 0.8-1.0; soaking the callus in agrobacterium suspension for 30 min; transferring the callus to sterilized filter paper for drying; then placing the mixture on a co-culture medium for 3 days at the temperature of 19-20 ℃.
(7) Callus washing and selection culture: washing the callus with sterilized water until no agrobacterium is visible; immersing in sterilized water containing 400ppm of Carbenicillin (CN) for 30 minutes; transferring the callus to sterilized filter paper for drying; transfer the calli to selection medium 2-3 times for 2 weeks each (first selection with a concentration of 400ppm carbenicillin and second and subsequent 250ppm hygromycin concentration of 250 ppm).
(8) Differentiation: transferring the resistant callus to a dark place on a pre-differentiation culture medium for 5-7 weeks; transferring the callus of the pre-differentiation culture onto a differentiation culture medium, and culturing under illumination at 26 ℃.
(9) Rooting: pruning roots produced upon differentiation; then transferring the strain to rooting culture medium, culturing for 2-3 weeks under illumination, and at 26 ℃.
(10) Transplanting: residual medium on the roots was washed off and seedlings with good root systems were transferred to the greenhouse while keeping the moisture moist for the first few days.
And designing a primer according to the target locus point of the gene editing, and detecting the editing condition of the OsCRK13 gene in the mutant. Primers (OsCRK 13-CR-F:5'-TTAGGCTTAGCCATTCCATTCCATG-3' and OsCRK13-CR-R:5'-GGAGCTGGT ACTGGTCGTAGTAGACG-3') were used to specifically amplify the OsCRK13 gene, and the amplified PCR product was sequenced while detecting whether Cas9 was contained. Sequencing results show that 5 bases (shown as SEQ ID NO. 3) are deleted inside the OsCRK13 gene in an OsCRK13-8 CRISPR homozygous Cas 9-free mutant family, and 2 bases (shown as SEQ ID NO. 4) are deleted inside the OsCRK13 gene in an OsCRK13-41 CRISPR homozygous Cas 9-free mutant family, namely the OsCRK13 gene in two mutant families is mutated.
Example 4: identification of the seedling stage low temperature stress phenotype of oscrk13 CRISPR mutants
The homozygous mutant (oscank 13) (including oscank 13-8 and oscank 13-41) with the identified genotype and the control wild type (i.e., non-transgenic, the same below) rice variety flower 11 (ZH 11) were sprouted and then directly inoculated into a small black box for hydroponic culture, 24 plants each, and the test was repeated 3 times. Healthy growing 4-leaf rice plants were subjected to 4℃low temperature stress for 4 days, then 28℃recovery for 7 days, photographed and investigated for plant survival.
CRISPR homozygous mutant plants exhibited a low temperature sensitive phenotype compared to ZH11 control (fig. 2). Survival statistics of oscrk13 mutants in small black boxes after 28 degrees of recovery and control ZH11 showed that the average survival rate of oscrk13-8 mutants after recovery at low temperature treatment was 1.45%, the average survival rate of oscrk13-41 mutants after recovery at low temperature treatment was 1.39%, the average survival rate of control ZH11 after recovery at low temperature treatment was 16.16%, and the survival rate of oscrk13 mutants was significantly lower than that of control wild-type ZH11 (fig. 3).
Claims (10)
1. In riceOsCRK13Application of gene in controlling low temperature resistance of rice, said geneOsCRK13The protein coded by the gene is shown as SEQ ID NO. 2.
2. The use according to claim 1, wherein the control is an increase in riceOsCRK13The expression level of the gene can improve the low temperature resistance of rice.
3. The use according to claim 1, wherein the control is reducing in riceOsCRK13The expression level of the gene weakens the low temperature resistance of the rice.
4. The use according to claim 1, wherein the control is knockdown, inhibition or silencing of riceOsCRK13The gene can weaken low temperature resistance of rice.
5. The use of claim 4, wherein the knockout employs a CRISPR/Cas9 system in which the target site of the gRNA is ATCTCCTCCTTCTGTAACAC.
6. The use according to claim 5, wherein the rice with reduced low temperature resistance after editing by CRISPR/Cas9 system has the polynucleotide shown in SEQ ID No.3 or SEQ ID No. 4.
7. In riceOsCRK13Application of gene in creating low temperature resistant rice, said geneOsCRK13The protein coded by the gene is shown as SEQ ID NO. 2.
8. The method according to claim 7, wherein the method comprises increasing the yield of riceOsCRK13The substance of the gene expression level is introduced into rice.
9. The use according to claim 8, wherein the substance comprisesOsCRK13Nucleic acid molecules of genes, or expression cassettes, recombinant vectors, recombinant microorganisms.
10. The use according to claim 9, saidOsCRK13The gene is shown as SEQ ID NO. 1.
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