CN116904421A - NADH pyrophosphatase mutant with enhanced heat resistance and application thereof - Google Patents
NADH pyrophosphatase mutant with enhanced heat resistance and application thereof Download PDFInfo
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Abstract
The invention relates to the technical field of enzyme catalysis, in particular to a heat-resistant enhanced NADH pyrophosphatase mutant and application thereof, wherein the amino acid sequence of the NADH pyrophosphatase mutant is shown as SEQ ID NO:1. When in use, NADH dry powder is taken and added with MgCl 2 、MnCl 2 And Tris-HCl, adding crude enzyme solution of NADH pyrophosphatase mutant, and reacting at 30-60 ℃. Compared with wild NADH pyrophosphatase, the NADH pyrophosphatase mutant can be applied to catalyzing NADH at high temperature and shows stronger heat stability.
Description
Technical Field
The invention relates to the technical field of enzyme catalysis, in particular to a heat-resistant NADH pyrophosphatase mutant and application thereof.
Background
Nicotinamide Adenine Dinucleotide (NAD) is critical to organisms because it participates in hundreds of biological reactions and regulates key biological processes such as metabolism and DNA repair. Research shows that up-regulating NAD biosynthesis through gene operation can raise stress resistance and prolong life of yeast and drosophila; increasing NAD levels proved to delay progestin and other degenerative diseases in mice. Moreover, there is sufficient evidence that Nicotinamide Riboside (NR) and Nicotinamide Mononucleotide (NMN) are potent NAD enhancers because they increase cellular NAD levels and confer a variety of health benefits; supplementation with NR or NMN may protect mice from age-related health deterioration.
Currently, these studies have focused mainly on the oxidized form of NAD precursors, since most NAD-consuming enzymes use NAD as a substrate. Little is known about the effect of the reduced form of NAD precursor. Recent studies have shown that reduced forms of NR (denoted NRH) can enhance NAD better in cells and tissues than NR or NMN. NRH increases resistance to genotoxin-induced cell death, and NRH conversion to NMNH is independent of Nrk1 or Nrk2.NRH is converted to NMNH by adenosine kinase to synthesize NAD and demonstrates that oral NRH can prevent acute kidney injury in mice.
The university of Qinghua developed a chemical reduction method to synthesize reduced NMN, called NMNH, and studied the biological impact of NMNH on cellular processes, found that NMNH was a better NAD enhancer than NMN both in vitro and in vivo, and found that NMNH increased cellular NADH levels, induced reduction stress, and inhibited cell growth, glycolysis, and TCA cycle.
Although the absorption effect of the reduced Nicotinamide Mononucleotide (NMNH) is better than that of NMN, the reduced nicotinamide mononucleotide has poor stability of aqueous solution, is extremely easy to degrade at normal temperature and neutral pH, is further aggravated with the extension of time, and causes great obstacle to mass production. To solve this problem, there are two schemes worth trying: one is to promote the enzyme activity and shorten the total reaction time so as to reduce the degradation occurrence time of NMNH, and the reaction is finished as soon as possible to carry out the extraction process; and the other is to raise the pH value of the total reaction system, so that the stability of NMNH is enhanced and the degradation degree in the reaction process is slowed down. The first scheme can be realized by screening high-enzyme activity mutants and improving the heat resistance of the enzyme, and the collision frequency of enzyme molecules at high temperature is increased, so that the enzymatic reaction process can be accelerated to a certain extent, and the screening of the enzyme mutants with enhanced heat resistance has high practical significance.
Disclosure of Invention
The invention aims to provide an NADH pyrophosphatase mutant with enhanced heat resistance and application thereof.
In order to achieve the above purpose, the present invention provides the following technical solutions:
a thermostable enhanced mutant NADH pyrophosphatase having an amino acid sequence as set forth in SEQ ID NO:1.
The thermostable enhanced NADH pyrophosphatase mutant of the present invention can be used for catalyzing NADH, and the use method thereof is as follows: taking NADH dry powder, adding MgCl 2 、MnCl 2 And Tris-HCl, adding crude enzyme solution of NADH pyrophosphatase mutant, and reacting at 30-60 ℃.
The preparation method of the crude enzyme liquid comprises the following steps:
(1) By a primer splicing method, SEQ ID NO:1 and cloning the corresponding coding polynucleotide sequence of the protein shown in the formula 1 into a prokaryotic expression vector to realize high expression in escherichia coli;
(2) By shake flask fermentation or fed-batch fermentation
(1) Shaking flask fermentation
E.coli single colony containing the expression vector is selected and inoculated in 10mL of culture medium A after autoclaving, and is cultured at 30 ℃ and 250rpm overnight;
taking 1L triangular flask the next day, and mixing the materials according to the following weight ratio of 1:100 was inoculated into 100mL of the autoclaved medium B, cultured at 30℃until the cell OD 5-6 was reached, and the flask was immediately placed in a 25℃shaker at 250rpm for 1 hour. IPTG was added to a final concentration of 0.1mM and incubation was continued at 25℃and 250rpm for 16 hours;
after the culture, the culture solution was centrifuged at 12000g for 20 minutes at 4℃to collect wet cells; then washing the bacterial precipitate twice with distilled water, collecting bacterial precipitate, and preserving at-70 ℃; simultaneously taking a small amount of thalli for SDS-PAGE detection;
(2) fed-batch fermentation
Fed-batch fermentation was performed in a computer controlled bioreactor, a 200ml seed shake flask was prepared from a single colony of E.coli harboring the expression vector, and the bioreactor was accessed when the culture of the seed shake flask was OD 2.0; the temperature was maintained at 37℃throughout the fermentation, the dissolved oxygen concentration during the fermentation was automatically controlled at 30% by the stirring rate and aeration supply cascade, while the pH of the medium was maintained at 7.0 by 50% v/v orthophosphoric acid and 30% v/v aqueous ammonia; during the fermentation, when the dissolved oxygen is greatly raised, feeding is started, and the feeding solution contains 9% w/v peptone, 9% w/v yeast extract and 14% w/v glycerol; when the OD600 is 50.0, the temperature is controlled to be 25 ℃, 0.1mM IPTG is used for inducing expression for 16 hours, and the collected thalli are centrifugally preserved at the temperature of minus 25 ℃, and when in use, 2 kg of pure water is added for each kg of wet thalli.
Wherein, the culture medium A is: 10g/L of tryptone, 5g/L of yeast extract, 3.55g/L of disodium hydrogen phosphate, 3.4g/L of monopotassium phosphate, 2.68g/L of ammonium chloride, 0.71g/L of sodium sulfate, 0.493g/L of magnesium sulfate heptahydrate, 0.027g/L of ferric chloride hexahydrate, 5g/L of glycerol and 0.8g/L of glucose, and kanamycin is added to 50mg/L.
Wherein, the culture medium B is: 10g/L of tryptone, 5g/L of yeast extract, 3.55g/L of disodium hydrogen phosphate, 3.4g/L of monopotassium phosphate, 2.68g/L of ammonium chloride, 0.71g/L of sodium sulfate, 0.493g/L of magnesium sulfate heptahydrate, 0.027g/L of ferric chloride hexahydrate, 5g/L of glycerol and 0.3g/L of glucose, and kanamycin is added to 50mg/L.
Wherein, the culture medium used for fed-batch fermentation is: 24g/L of yeast extract, 12g/L of peptone, 0.4% w/v glucose, 2.31g/L of phosphatase and 12.54g/L of dipotassium hydrogen phosphate, pH 7.0.
Compared with the prior art, the invention has the beneficial effects that:
the thermostable NADH pyrophosphatase mutant can catalyze NADH at high temperature, and compared with wild NADH pyrophosphatase, the thermostable NADH pyrophosphatase mutant has stronger thermostability and can obtain better social benefit and economic value.
Drawings
FIG. 1 shows the results of a high performance liquid chromatography with 0.5g/L NADH; 19.2 minutes are the substrate NADH.
FIG. 2 shows the results of a 0.4g/L NMNH HPLC; 8.2 minutes was the product NMNH peak.
FIG. 3 shows the results of the 15-minute reaction in example 5.
FIG. 4 shows the results of the 15-minute reaction in comparative example 1.
FIG. 5 shows the results of the 23 hour reaction in example 6.
FIG. 6 shows the results of the 15-minute reaction in example 7.
Detailed Description
The following description of the embodiments of the present invention will be made clearly and completely with reference to the accompanying drawings, in which it is apparent that the embodiments described are only some embodiments of the present invention, but not all embodiments. All other embodiments, which can be made by those skilled in the art based on the embodiments of the invention without making any inventive effort, are intended to be within the scope of the invention.
The instruments and reagents used in this example are commercially available products unless otherwise specified.
The liquid phase detection conditions referred to in the following examples are as follows:
mobile phase: phase A: 15.6g of sodium dihydrogen phosphate dihydrate is dissolved in 900mL, and after complete dissolution, water is added to fix the volume of 1000mL. Then 20mL of methanol is added for complete dissolution, and then ultrasonic filtration is performed. And B phase: methanol. A, B=95% and 5%.
Retention time: isocratic elution was performed for 22 minutes.
Column type: shimadzu C18.6 x 250mm x 5 μm.
Ultraviolet wavelength: 340nm.
Column temperature: 30 ℃.
Sample injection volume: 10 mu L.
EXAMPLE 1 obtaining the wild-type NADH pyrophosphatase Gene sequence
The secondary structure and codon preference of the gene are adjusted by a total gene synthesis method so as to realize high expression in escherichia coli. The Primer Premier (http:// Primer3.Ut. Ee /) and OPTIMIZER (http:// genome. Uro. Es/OPTIMIZER /) were used for design, and the difference in annealing temperature (Tm) was controlled within 3 ℃, the Primer length was controlled within 60base, the Primer sequences were as shown in Table 2, and the obtained primers were dissolved in double distilled water and then added to the following reaction system so that the final concentration of each Primer was 30nM and the final concentration of the head-to-tail primers was 0.6. Mu.M.
TABLE 1
2mMdNTP mix(2mM eachdNTP) | 5μl |
10×Pfubuffer | 5μl |
Pfu DNA polymerase(10U/μl) | 0.5μl |
ddH 2 O | So that the total volume of the reaction system was 50. Mu.l |
The prepared PCR reaction system is placed in a Bo-Japanese patent application (XP) cycler gene amplification instrument for amplification according to the following procedures: 98℃30s,55℃45s,72℃120s,35x. The DNA fragment obtained by PCR was cut and purified, and cloned into NdeI/XhoI site of pET30a by homologous recombination. The monoclonal was picked for sequencing. The DNA sequence which is sequenced successfully is SEQ ID NO:4, designated PKNPYwt, the corresponding amino acid sequence of which is SEQ ID NO:3.
TABLE 2
1 | ATGCGTACCGGTCGTTGGCAGTCTGCTCTGCTGGACCCGGCTGCTGCTGGTGGTTG |
2 | GTTAGCGTCACCCAGGAACTGCTGTTTGTAGTGAGCCAGAGCCCAACCACCAGCAGCAGC |
3 | GTTCCTGGGTGACGCTAACGGTGTTCTGTTCCCGCGTGAATGGCTGAAACGTCAGGACCT |
4 | TCACCGTCGAAGTGACCAACACCGTGTTCAGACAGAACACGCAGGTCCTGACGTTTCAGC |
5 | TGGTCACTTCGACGGTGACGCTATCTACCTGCTGGAAGTTGACGCTCCGGAACGTCTGGA |
6 | AGCTTCCAGCATGAAGTGACGCAGACCGATCCAGTCGCAACCTTCCAGACGTTCCGGAGC |
7 | GTCACTTCATGCTGGAAGCTGACGAAGACCTGTTCGCTATGCTGGGTTTCGCTTCTCAGA |
8 | GCAAGAACCGCAGAAACGGTTTTCACGAGCCCAGGTACCGATCTGAGAAGCGAAACCCAG |
9 | CGTTTCTGCGGTTCTTGCGGTGCTCCGATGCAGCGTATGCCGCGTGACCGTGCTATGCGT |
10 | CGGAGACAGCAGCGGGTAACGCTGGATGTCGCAGGTTTCGCAACGCATAGCACGGTCACG |
11 | CCCGCTGCTGTCTCCGTCTATGATCGTTCTGGTTACCCGTGGTGACGAACTGCTGCTGGC |
12 | AGCCAGGGTAGAGTACATACCCGGAACGAAACGCGGAGAACGAGCCAGCAGCAGTTCGTC |
13 | GGTATGTACTCTACCCTGGCTGGTTTCTGCGAACCGGGTGAATCTGTTGAACACTGCGTT |
14 | ACCGATTTCCAGACCAACTTCTTCACGAACTTCACGAGCAACGCAGTGTTCAACAGATTC |
15 | GAAGTTGGTCTGGAAATCGGTAACATCCGTTACCTGGGTTCTCAGTCTTGGCCGTTCCCG |
16 | CACCAGAAACGTAGTCAGCGTGGAAACCCAGCATCAGAGAGTGCGGGAACGGCCAAGACT |
17 | CGCTGACTACGTTTCTGGTGAAATCGTTATGCAGCCGGACGAAATCGAAGACGCTCGTTG |
18 | ACGACCAGCCGGCAGACGCGGCAGTTCGTCGATACGGAACCAACGAGCGTCTTCGATTTC |
19 | CTGCCGGCTGGTCGTTCTATCGCTCGTTACCTGATCGACGTTTTCCTGGCTCGTCGTGCT |
20 | TTAGTGACCACCACCCGGCAGAACCGGGTCCGGCAGACCAGCACGACGAGCCAGG |
EXAMPLE 2 acquisition of Gene sequence of NADH pyrophosphatase mutant
The NADH pyrophosphatase suitable for high temperature reaction of the present invention is derived from the nucleotide sequence of SEQ ID NO:3, wild-type NADH pyrophosphatase. NADH pyrophosphatase mutants and polynucleotides encoding such mutants may be prepared using methods commonly used by those skilled in the art. Mutants can be obtained by subjecting the enzyme-encoding enzyme to in vitro recombination, polynucleotide mutagenesis, DNA shuffling, error-prone PCR, directed evolution methods, and the like.
The secondary structure and codon preference of the gene are adjusted by a total gene synthesis method so as to realize high expression in escherichia coli. The Primer Premier (http:// Primer3.Ut. Ee /) and OPTIMIZER (http:// genome. Uro. Es/OPTIMIZER /) were used for design, and the difference in annealing temperature (Tm) was controlled within 3 ℃, the Primer length was controlled within 60base, the Primer sequences were as shown in Table 4, and the obtained primers were dissolved in double distilled water and then added to the following reaction system so that the final concentration of each Primer was 30nM and the final concentration of the head-to-tail primers was 0.6. Mu.M.
TABLE 3 Table 3
2mM dNTP mix(2mM eachdNTP) | 5μl |
10×Pfubuffer | 5μl |
Pfu DNA polymerase(10U/μl) | 0.5μl |
ddH 2 O | So that the total volume of the reaction system was 50. Mu.l |
The prepared PCR reaction system is placed in a Bo-Japanese patent application (XP) cycler gene amplification instrument for amplification according to the following procedures: 98℃30s,55℃45s,72℃120s,35x. The DNA fragment obtained by PCR was cut and purified, and cloned into NdeI/XhoI site of pET30a by homologous recombination. The monoclonal was picked for sequencing. The DNA sequence which is sequenced successfully is SEQ ID NO:2, designated PKNPY1, having the corresponding amino acid sequence of SEQ ID NO:1. compared to the sequence of PKNPYwt, there are three mutations V68L, E109H, R242S.
TABLE 4 Table 4
Example 3 shake flask expression test
E.coli single colonies containing the expression vector were picked and inoculated into 10ml of autoclaved medium: 10g/L of tryptone, 5g/L of yeast extract, 3.55g/L of disodium hydrogen phosphate, 3.4g/L of monopotassium phosphate, 2.68g/L of ammonium chloride, 0.71g/L of sodium sulfate, 0.493g/L of magnesium sulfate heptahydrate, 0.027g/L of ferric chloride hexahydrate, 5g/L of glycerol and 0.8g/L of glucose, and kanamycin is added to 50mg/L. Culturing at 30℃and 250rpm overnight.
Taking 1L triangular flask the next day, and mixing the materials according to the following weight ratio of 1: an inoculation ratio of 100 was inoculated into 100ml of autoclaved medium: 10g/L of tryptone, 5g/L of yeast extract, 3.55g/L of disodium hydrogen phosphate, 3.4g/L of monopotassium phosphate, 2.68g/L of ammonium chloride, 0.71g/L of sodium sulfate, 0.493g/L of magnesium sulfate heptahydrate, 0.027g/L of ferric chloride hexahydrate, 5g/L of glycerol and 0.3g/L of glucose, and kanamycin is added to 50mg/L. The cells were cultured at 30℃until the cell OD 5-6 was reached, and the flask was immediately placed in a 25℃shaker at 250rpm for 1 hour. IPTG was added to a final concentration of 0.1mM and the incubation was continued at 25℃and 250rpm for 16 hours.
After the completion of the culture, the culture was centrifuged at 12000g for 20 minutes at 4℃to collect wet cells. Then the bacterial cell precipitate is washed twice with distilled water, and the bacterial cells are collected and stored at-70 ℃. And simultaneously taking a small amount of thalli for SDS-PAGE detection.
Example 4 fed-batch fermentation
Fed-batch fermentation was performed in a computer controlled bioreactor (Shanghai state of China) with 15L capacity and 8L working volume using 24g/L yeast extract, 12g/L peptone, 0.4% w/v glucose, 2.31g/L phosphatase and 12.54g/L dipotassium hydrogen phosphate, pH 7.0.
E.coli single colonies containing the expression vector were prepared into 200ml seed shake flasks and were accessed into the bioreactor when the culture of the seed shake flasks was OD 2.0. The temperature was maintained at 37℃throughout the fermentation, the dissolved oxygen concentration was automatically controlled at 30% by stirring rate (rpm) and aeration supply cascade, and the pH of the medium was maintained at 7.0 by 50% (v/v) orthophosphoric acid and 30% (v/v) aqueous ammonia. During the fermentation process, when the dissolved oxygen is greatly raised, the feeding is started. The feed solution contained 9% w/v peptone, 9% w/v yeast extract, 14% w/v glycerol. When OD600 was about 50.0 (wet weight: about 100 g/L), the temperature was controlled at 25℃and expression was induced with 0.1mM IPTG for 16 hours, and the cells were collected by centrifugation and stored at-25℃and used by adding 2 kg of pure water per kg of wet cells.
EXAMPLE 5 mutant high temperature reaction
Water bath reaction at 60 deg.c and 0.5mM MgCl 2 ,0.5mM MnCl 2 20mM Tris-HCl, pH=8.0; 60mM ADH dry powder; 10g/L of crude enzyme PKNPY 1. Samples were taken 15 minutes to detect product formation. The results in FIG. 3 show that the PKNPY1 system has reacted more than 95% of the substrate at 15 minutes. Since the byproduct adenylate absorbs weakly at 340nm, it is not shownObvious absorption peaks are shown, but do not affect the judgment of the overall reaction.
Comparative example 1 wild-type protein high temperature reaction
Water bath reaction at 60 deg.c and 0.5mM MgCl 2 ,0.5mM MnCl 2 20mM Tris-HCl, pH=8.0; 60mM NADH dry powder; 10g/L of crude enzyme PKNPYwt. Samples were taken 15 minutes to detect product formation. The results of FIG. 4 show that only about 1/5 of NADH was reacted, a large amount of substrate remained in the reaction system, and that PKNPYwt was low in the enzyme activity under the above conditions.
EXAMPLE 6 prolonged reaction time production of product
Water bath reaction at 60 deg.c and 0.5mM MgCl 2 ,0.5mM MnCl 2 20mM Tris-HCl, pH=8.0; 60mM NADH dry powder; 10g/L of crude enzyme PKNPY 1. Samples were taken after 23 hours to detect product formation. The results in fig. 5 show that NMNH is mostly degraded, showing the instability of the product solution.
EXAMPLE 7 mutant Normal temperature reaction
30 ℃ water bath reaction, 0.5mM MgCl 2 ,0.5mM MnCl 2 20mM Tris-HCl, pH=8.0; 60mM NADH dry powder; 10g/L of crude enzyme PKNPY 1. Samples were taken 15 minutes to detect product formation. The results in FIG. 6 show that only about 3/4 of NADH has reacted, and that significant substrate remains in the reaction system, which can cause significant interference with subsequent separation and extraction.
Although embodiments of the present invention have been shown and described, it will be understood by those skilled in the art that various changes, modifications, substitutions and alterations can be made therein without departing from the principles and spirit of the invention, the scope of which is defined in the appended claims and their equivalents.
Claims (5)
1. A thermostable enhanced NADH pyrophosphatase mutant characterized in that: the amino acid sequence is shown in SEQ ID NO:1.
2. Use of the thermostable enhanced NADH pyrophosphatase mutant of claim 1 for catalyzing NADH.
3. The use of a thermostable enhanced mutant NADH pyrophosphatase according to claim 2 for catalyzing NADH, characterized in that: taking NADH dry powder, adding MgCl 2 、MnCl 2 And Tris-HCl, adding crude enzyme solution of NADH pyrophosphatase mutant, and reacting at 30-60 ℃.
4. The use of a thermostable enhanced mutant NADH pyrophosphatase according to claim 3, for catalyzing NADH, wherein said crude enzyme solution preparation method comprises the steps of:
(1) By a primer splicing method, SEQ ID NO:1 and cloning the corresponding coding polynucleotide sequence of the protein shown in the formula 1 into a prokaryotic expression vector to realize high expression in escherichia coli;
(2) By shake flask fermentation or fed-batch fermentation
(1) Shaking flask fermentation
E.coli single colony containing the expression vector is selected and inoculated in 10mL of culture medium A after autoclaving, and is cultured at 30 ℃ and 250rpm overnight; the culture medium A is as follows: 10g/L of tryptone, 5g/L of yeast extract, 3.55g/L of disodium hydrogen phosphate, 3.4g/L of monopotassium phosphate, 2.68g/L of ammonium chloride, 0.71g/L of sodium sulfate, 0.493g/L of magnesium sulfate heptahydrate, 0.027g/L of ferric chloride hexahydrate, 5g/L of glycerol and 0.8g/L of glucose, and adding kanamycin to 50mg/L;
taking 1L triangular flask the next day, and mixing the materials according to the following weight ratio of 1: inoculating 100 to 100mL of autoclaved culture medium B, culturing at 30deg.C until the cell OD 5-6 is reached, immediately placing the triangular flask in 25 deg.C shaking table, and culturing at 250rpm for 1 hr; IPTG was added to a final concentration of 0.1mM and incubation was continued at 25℃and 250rpm for 16 hours; the culture medium B is as follows: 10g/L of tryptone, 5g/L of yeast extract, 3.55g/L of disodium hydrogen phosphate, 3.4g/L of monopotassium phosphate, 2.68g/L of ammonium chloride, 0.71g/L of sodium sulfate, 0.493g/L of magnesium sulfate heptahydrate, 0.027g/L of ferric chloride hexahydrate, 5g/L of glycerol and 0.3g/L of glucose, and adding kanamycin to 50mg/L;
after the culture, the culture solution was centrifuged at 12000g for 20 minutes at 4℃to collect wet cells; then washing the bacterial precipitate twice with distilled water, collecting bacterial precipitate, and preserving at-70 ℃; simultaneously taking a small amount of thalli for SDS-PAGE detection;
(2) fed-batch fermentation
Fed-batch fermentation was performed in a computer controlled bioreactor, a 200ml seed shake flask was prepared from a single colony of E.coli harboring the expression vector, and the bioreactor was accessed when the culture of the seed shake flask was OD 2.0; the temperature was maintained at 37℃throughout the fermentation, the dissolved oxygen concentration during the fermentation was automatically controlled at 30% by the stirring rate and aeration supply cascade, while the pH of the medium was maintained at 7.0 by 50% v/v orthophosphoric acid and 30% v/v aqueous ammonia; during fermentation, when dissolved oxygen rise occurs, feeding is started, and the feeding solution contains 9% w/v peptone, 9% w/v yeast extract and 14% w/v glycerol; when the OD600 was 50.0, the temperature was controlled at 25℃and expression was induced with 0.1mM IPTG for 16 hours, and the cells were harvested by centrifugation and stored at-25 ℃.
5. The use of a thermostable enhanced mutant NADH pyrophosphatase according to claim 4, for catalyzing NADH, wherein: in the preparation method of the crude enzyme liquid, the culture medium used for fed-batch fermentation is as follows: 24g/L of yeast extract, 12g/L of peptone, 0.4% w/v glucose, 2.31g/L of phosphatase and 12.54g/L of dipotassium hydrogen phosphate, pH 7.0.
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