CN116622683A - Specific bacillus lyase and preparation method and application thereof - Google Patents

Specific bacillus lyase and preparation method and application thereof Download PDF

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CN116622683A
CN116622683A CN202310308686.XA CN202310308686A CN116622683A CN 116622683 A CN116622683 A CN 116622683A CN 202310308686 A CN202310308686 A CN 202310308686A CN 116622683 A CN116622683 A CN 116622683A
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bacillus
lyase
primer
acetylmuramyl
alanine
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CN116622683B (en
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梁小波
王振宇
刘贻坦
冯应山
唐若诗
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Kunming University of Science and Technology
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    • C12N9/78Hydrolases (3) acting on carbon to nitrogen bonds other than peptide bonds (3.5)
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Abstract

The application provides a specific bacillus lyase and a preparation method and application thereof, wherein a genome DNA of bacillus belicus FS001 is used as a template, primers are designed and synthesized, an xlyB (BSFS 001GM 003346) gene is amplified by PCR, the gene is recombined with a pET-23b vector, induced expression is carried out in E.coli BL21, and Ni-Sepharose affinity chromatography is adopted for purification to obtain recombinant N-acetylmuramyl-L-alanine-amidase protein with higher purity. The lyase can hydrolyze cell walls of a variety of bacillus species. And has great application prospect in inhibiting the growth of bacillus and in the production of biological medicines and foods.

Description

Specific bacillus lyase and preparation method and application thereof
Technical Field
The application relates to the technical field of bioengineering, in particular to a specific bacillus lyase and a preparation method and application thereof.
Background
Bacillus is a gram positive bacterium, and its cell wall is composed of thick and compact peptidoglycan and teichoic acid, so it has strong stress-resistance action and can survive in high-temp. and acid-base polar environments. Therefore, in the prior art, when bacillus is killed by using antibiotics, problems such as resistance of bacteria to antibiotics are likely to occur. The study of the use of bacterial lytic enzymes to lyse and kill bacillus under the specific and highly active characteristics of bacterial lytic enzymes has become of increasing interest.
Disclosure of Invention
The embodiment of the application aims to provide a specific bacillus lyase, a preparation method and application thereof, which can provide a molecular basis for exploring bacterial apoptosis and a theoretical basis for developing and utilizing efficient bacillus hydrolase.
According to a first aspect of the present application there is provided a specific bacillus lyase, said lyase being an N-acetylmuramyl-L-alanine-amidase, said lyase being obtained based on analysis of sequencing data of bacillus bailii FS001 genome.
According to a second aspect of the present application, there is also provided a method for preparing a specific bacillus lyase, comprising the steps of:
s1, designing and synthesizing a primer for amplifying N-acetylmuramyl-L-alanine-amidase, wherein the primer comprises an upstream primer and a downstream primer.
The sequence of the upstream primer is as follows: CGGGATCCGGTGGGGATTGAAGTGAAAAA.
The sequence of the downstream primer is as follows: CCGCTCGAGCAGTTTTTCTTCAATTTTCG.
S2, amplifying by using the bacillus bailii FS001 genome as a template based on the upstream primer and the downstream primer to obtain a target gene fragment.
S3, connecting the target gene fragment with a plasmid to complete construction of a recombinant plasmid; the recombinant plasmid is transformed into escherichia coli for expression.
S4, purifying to obtain the N-acetylmuramyl-L-alanine-amidase.
In one embodiment, in step S2, the conditions of amplification include at least: pre-denaturation at 98℃for 2min, denaturation at 98℃for 10s, annealing at 60℃for 15s, extension at 72℃for 10s, for a total of 30 cycles.
In one embodiment, after step S3, a recombinant plasmid containing the N-acetylmuramyl-L-alanine-amidase gene is selected and subjected to double cleavage and sequencing verification.
In one embodiment, in step S4, the purifying comprises at least: protein purification was performed using a protein purification system.
According to a third aspect of the present application there is also provided the use of a lyase for specific lysis of bacillus using the lyase provided in the first aspect.
In one embodiment, the bacillus includes at least bacillus subtilis, bacillus belicus, bacillus aryabhattai.
In one embodiment, the reaction conditions suitable for the specific cleavage include at least: the pH is 6.5-7.5, and the temperature is 30-37 ℃.
In one embodiment, the reaction conditions suitable for the specific cleavage include: the pH was 6.5 and the temperature was 37 ℃.
In one embodiment, the effect of the lyase on bacillus is determined by absorbance measurement.
Compared with the prior art, the application has the beneficial effects that:
in the technical scheme of the application, the lyase provided by the application has specificity and high activity, has strong specificity to pathogenic bacteria and does not interfere with normal flora; can kill pathogenic bacteria colonized on mucosal surfaces; the probability of bacterial resistance to the lyase is low. Can hydrolyze cell walls of various bacillus and can crack bacillus efficiently. Has great application prospect in inhibiting the growth of bacillus and in the production of biological medicines and foods.
Drawings
FIG. 1 is an electrophoresis chart of the results of the gene polymerase chain reaction in the method for preparing a lyase according to the embodiment of the application.
FIG. 2 is a diagram showing construction of a recombinant vector in the method for producing a lyase according to an embodiment of the present application.
FIG. 3 is a polyacrylamide gel electrophoresis of the purified enzyme protein in the method for preparing a lyase according to an embodiment of the application.
FIG. 4 is a schematic diagram showing the comparison of the effects of the lyase in the embodiment of the application on hydrolyzing Bacillus subtilis under different pH values;
FIG. 5 is a schematic view showing the effect of the lyase of the present application on hydrolyzing Bacillus at 37℃and pH 6.5;
FIG. 6 is a photograph of a sample of the lyase of the present application taken before and after hydrolysis of Bacillus subtilis.
Detailed Description
The following describes the embodiments of the present application in further detail with reference to the accompanying drawings. These embodiments are merely illustrative of the present application and are not intended to be limiting.
According to a first aspect of the present application there is first provided a specific bacillus lyase (wp_ 015417280.1, protein molecular weight 35.11 KDa) designated xlyB as N-acetylmuramyl-L-alanine-amidase. The lyase is obtained based on sequencing data analysis of the FS001 genome of Bacillus subtilis.
Biological preservation unit: china general microbiological culture Collection center, preservation address: beijing, chaoyang area, north Chen Xili No.1, 3, china academy of sciences, microbiological institute. Deposit No.: 17946, date of preservation 2019.06.17.
According to a second aspect of the present application, there is also provided a method for preparing a specific bacillus lyase.
It should be noted that, the biological materials involved in the preparation method provided in this embodiment include: bacillus belicus (Bacillus velezensis) FS001 is selected in the laboratory, and E.coli JM109, E.coli E.coilBL21 and expression vector pET-23b are selected; bacterial genomic DNA extraction kits were purchased from BioTeke; DNA polymerase is purchased from Shanghai chemical company; restriction enzymes BamHI, xhoI and T4 ligase were purchased from Takara; each liter of LB culture medium contains 10g of peptone, 5g of yeast extract and 10g of NaCl; the binding buffer included 300mM NaCl, 50mM disodium hydrogen phosphate, 10mM imidazole, and the pH of the binding buffer was 7.4; the rinse buffer included 300mM NaCl, 50mM disodium hydrogen phosphate, 20mM imidazole, and the pH of the rinse buffer was 7.4; the elution buffer included 300mM NaCl, 50mM disodium hydrogen phosphate, 500mM imidazole, and the pH of the elution buffer was 7.4; phosphate buffer (1 XPBS buffer) including 10mM phosphate, 1XPBS buffer pH 7.2-7.4; ampicillin and lysozyme were purchased from Shanghai. Ampicillin-containing LB medium used in this example had ampicillin concentrations of 100. Mu.g/mL.
The preparation method comprises the following steps:
s1, designing and synthesizing a primer for amplifying and removing N-acetylmuramyl-L-alanine-amidase gene xlyB of a stop codon coding sequence, wherein the primer comprises an upstream primer and a downstream primer.
The sequence of the upstream primer (xlyB-F) is as follows:
the sequence of the downstream primer (xlyB-R) is:
s2, amplifying by using the bacillus bailii FS001 genome as a template based on the upstream primer and the downstream primer to obtain a target gene fragment.
Specifically, the genomic DNA of bacillus belay FS001 was extracted using a bacterial genomic DNA extraction kit. Amplification was performed using the Bacillus belicus FS001 genomic DNA as a template, and the xlyB-F and x1yB-R primers.
The amplification system is as follows: the concentration of xlyB-F was 10. Mu.M, 1. Mu.L was added, the concentration of xlyB-R was 10. Mu.M, 1. Mu.L was added, 10 XPCR buffer was 5. Mu.L, dNTPMmix was 2.5mM, 4. Mu.L was added, 2. Mu.L of genomic DNA was added, and high fidelity enzyme (rTaq enzyme) was added to 0.25. Mu.L, dd H 2 O was added at 36.75. Mu.L.
The amplification conditions were as follows: the results of 2min pre-denaturation at 98 ℃,10 s denaturation at 98 ℃, 15s annealing at 60 ℃ and 10s extension at 72 ℃ for 30 cycles are shown in FIG. 1. FIG. 1 is an electrophoresis chart of the results of a gene polymerase chain reaction (PCR for short). In FIG. 1, lane 1 shows the result of electrophoresis of a nucleic acid standard, lane 2 shows the result of PCR of the lyase gene provided in this example, and lane 3 shows the result of PCR of a negative control group to which Bacillus belicus genome was not added.
S3, connecting the target gene fragment with a plasmid to complete construction of a recombinant plasmid.
Specifically, the PCR product is subjected to glue recovery, the pET23b vector and the corresponding target fragment are subjected to enzyme digestion by restriction enzymes BamHI and XhoI, and then are connected by T4 ligase to obtain a recombinant vector, wherein the structure of the recombinant vector is shown in figure 2; the ligation product was mixed with recipient E.coli JM109 competent, placed on ice for 30min, heat-shocked at 42℃for 90s, then added with 900. Mu.L of 37℃temperature-bath SOC liquid medium, resuscitated at 37℃for 45min at 100rpm, centrifuged and spread on ampicillin-containing LB solid medium, cultured overnight at 37℃to screen recombinant plasmids, and subjected to double digestion and sequencing verification. And transforming the recombinant plasmid which is verified to be correct into E.coli BL21 to obtain the recombinant strain containing the N-acetylmuramyl-L-alanine-amidase gene.
S4, the recombinant plasmid is transformed into escherichia coli for expression.
Specifically, the recombinant strain is inoculated in LB liquid medium containing 100 mu g/mL ampicillin for overnight culture, and then inoculated in 500mL of LB liquid medium containing ampicillin according to the ratio of 1:100 for culturing at 37 ℃ and 200rpm until OD 600 About 0.6 to 0.8, addIPTG is added to lead the final concentration to be 0.8-1 mmol/L for induction, the induction expression is carried out for 12-16 h under the condition of 20 ℃ and 150rpm, and the bacterial cells are collected by centrifugation for 10min at 5000 rpm. Suspending the bacterial body in 30ml of binding buffer solution, adding a proper amount of lysozyme, standing and lysing the cell wall, performing ultrasonic disruption for 3s-5s, centrifuging at 4 ℃ and 10000rpm for 20min after cell disruption is completed, separating supernatant and precipitate, and collecting supernatant to obtain crude enzyme solution.
S4, purifying to obtain the N-acetylmuramyl-L-alanine-amidase.
Protein purification was performed using a protein purification system. The system program was started and the purification system and A/B pump were thoroughly rinsed with suction, and the columns were equilibrated with 5 column volumes of rinse buffer at a flow rate of 1 mL/min. Cell disruption supernatant was fed automatically from the A-feed inlet at a flow rate of 1 mL/min. After all samples were fed into the system, the a sample inlet was moved into the elution buffer and washed at about 2CV at the same flow rate. The impurity proteins were removed by washing with rinse buffer and elution buffer in linear low to high imidazole content 2CV. The cloned protein containing the histidine tag adsorbed to the Ni-affinity chromatography column was eluted with elution buffer at a flow rate of 1 mL/min. And (5) paying attention to the peak time of the system at moment, judging and collecting filtrate. The purity of the eluate was checked by polyacrylamide gel electrophoresis (SDS-PAGE). The eluate was dialyzed overnight against 1XPBS buffer to remove imidazole and high concentration sodium chloride NaCl using a dialysis bag, and the purified enzyme solution was obtained as shown in FIG. 3, in which FIG. 3, lane 1 is a standard protein electrophoresis pattern, lane 2 is a purified electrophoresis pattern of the disrupted supernatant after induction of the expression strain, and lane 3 is an electrophoresis pattern of the lyase provided in the purification example.
According to a third aspect of the present application there is also provided the use of a lyase for specific lysis of bacillus using the lyase provided in the first aspect.
In one embodiment, the bacillus includes at least bacillus subtilis, bacillus belicus, and bacillus aryabhattai.
Specifically, bacillus subtilis, bacillus belgium, bacillus alnicosum,Culturing the bacillus megaterium strain in 100mL LB culture medium at 37 ℃ under the condition of 200 revolutions per minute until logarithmic growth phase, wherein the absorbance value of bacterial liquid meets OD 600 =about 1.0. The cells were collected by centrifugation at 8000 Xs for 5min and washed twice with 1.0M phosphate buffer, pH 6.5. Finally, the bacterial strain is resuspended in PBS to make OD 600 To about 0.6. Purified 22.5. Mu.g of XlyB protein was added to 3mL of the bacterial suspension and incubated at 37 ℃.
In one embodiment, the reaction conditions suitable for the specific cleavage include at least: the pH is 6.5-7.5, and the temperature is 30-37 ℃.
Preferably, the reaction conditions for the specific cleavage include: the pH was 6.5 and the temperature was 37 ℃.
Specifically, the optimal reaction pH for N-acetylmuramyl-L-alanine-amidase is 6.5. To determine the optimal conditions for the bactericidal activity of X1yB, the conditions were optimized in terms of pH of the buffer. The activity of XlyB-hydrolyzed Bacillus subtilis (B.subtilisRIK1285) cells was examined in buffers with pH values of 6.5, 6.8, 7.0 and 7.5, respectively, and the results showed that the pH range of 6.5 to 6.8 was the best, and the results are shown in FIG. 4.
The control group (CK group) in FIG. 4 shows absorbance of the strain of Bacillus without XlyB protein.
In one embodiment, the effect of the lyase on bacillus is determined by absorbance measurement.
Specifically, 200. Mu.L was taken after 60min of cleavage for absorbance measurement. The results show that XlyB has good hydrolysis effect on Bacillus subtilis, bacillus belicus and Bacillus aryabhattai in logarithmic growth phase, and slightly poor hydrolysis effect on Bacillus megaterium, and the result is shown in FIG. 5, and the control group (CK group) in FIG. 5 is the absorbance of the Bacillus strain without XlyB protein. The effect of XlyB on hydrolyzing bacillus subtilis is shown in fig. 6.
The foregoing is merely a preferred embodiment of the present application, and it should be noted that modifications and substitutions can be made by those skilled in the art without departing from the technical principles of the present application, and these modifications and substitutions should also be considered as being within the scope of the present application.

Claims (10)

1. A specific bacillus lyase, characterized in that the lyase is an N-acetylmuramyl-L-alanine-amidase, the lyase being obtained based on analysis of sequencing data of bacillus bailii FS001 genome; the biological preservation number is CGMCC No.17946.
2. The preparation method of the specific bacillus lyase is characterized by comprising the following steps of:
s1, designing and synthesizing a primer for amplifying N-acetylmuramyl-L-alanine-amidase, wherein the primer 1 comprises an upstream primer and a downstream primer;
the sequence of the upstream primer is as follows: CGGGATCCGGTGGGGATTGAAGTGAAAAA;
the sequence of the downstream primer is as follows: CCGCTCGAGCAGTTTTTCTTCAATTTTCG;
s2, amplifying by taking the bacillus bailii FS001 genome as a template based on the upstream primer and the downstream primer to obtain a target gene fragment;
s3, connecting the target gene fragment with a plasmid to complete construction of a recombinant plasmid; the recombinant plasmid is transformed into escherichia coli for expression;
s4, purifying to obtain the N-acetylmuramyl-L-alanine-amidase.
3. The method of preparing a lyase according to claim 1, wherein in step S2, the conditions for amplification comprise at least: pre-denaturation at 98℃for 2min, denaturation at 98℃for 10s, annealing at 60℃for 15s, extension at 72℃for 10s,30 cycles.
4. The method for producing a lyase according to claim 2, wherein after step S3, a recombinant plasmid containing an N-acetylmuramyl-L-alanine-amidase gene is selected and subjected to double cleavage and sequencing.
5. A method of preparing a lyase according to claim 3, wherein in step S4 the purification comprises at least: protein purification was performed using a protein purification system.
6. Use of a lyase according to claim 1 for the specific lysis of bacillus.
7. The use of the lyase according to claim 6, wherein the bacillus comprises at least bacillus subtilis, bacillus belicus, bacillus aryabhattai.
8. Use of a lyase according to claim 7, wherein the reaction conditions suitable for specific cleavage comprise at least: the pH is 6.5-7.5, and the temperature is 30-37 ℃.
9. Use of a lyase according to claim 8, wherein the reaction conditions suitable for specific cleavage comprise: the pH was 6.5 and the temperature was 37 ℃.
10. Use of a lyase according to claim 9, wherein the effect of the lyase on the lysis of bacillus is determined by absorbance measurement.
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