CN116286770A - D-psicose-3-epimerase from clostridium and application thereof - Google Patents
D-psicose-3-epimerase from clostridium and application thereof Download PDFInfo
- Publication number
- CN116286770A CN116286770A CN202310154807.XA CN202310154807A CN116286770A CN 116286770 A CN116286770 A CN 116286770A CN 202310154807 A CN202310154807 A CN 202310154807A CN 116286770 A CN116286770 A CN 116286770A
- Authority
- CN
- China
- Prior art keywords
- psicose
- epimerase
- enzyme
- dpe
- host bacterium
- Prior art date
- Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
- Granted
Links
- 108030002106 D-psicose 3-epimerases Proteins 0.000 title claims abstract description 39
- 241000193403 Clostridium Species 0.000 title abstract description 11
- 238000000855 fermentation Methods 0.000 claims abstract description 42
- 230000004151 fermentation Effects 0.000 claims abstract description 42
- 239000002773 nucleotide Substances 0.000 claims abstract description 17
- 125000003729 nucleotide group Chemical group 0.000 claims abstract description 17
- 238000005457 optimization Methods 0.000 claims abstract description 16
- 108020004705 Codon Proteins 0.000 claims abstract description 10
- PEDCQBHIVMGVHV-UHFFFAOYSA-N Glycerine Chemical compound OCC(O)CO PEDCQBHIVMGVHV-UHFFFAOYSA-N 0.000 claims description 32
- 235000014469 Bacillus subtilis Nutrition 0.000 claims description 31
- 238000000034 method Methods 0.000 claims description 30
- CSNNHWWHGAXBCP-UHFFFAOYSA-L Magnesium sulfate Chemical compound [Mg+2].[O-][S+2]([O-])([O-])[O-] CSNNHWWHGAXBCP-UHFFFAOYSA-L 0.000 claims description 28
- 244000063299 Bacillus subtilis Species 0.000 claims description 21
- 241000894006 Bacteria Species 0.000 claims description 20
- 239000007788 liquid Substances 0.000 claims description 19
- 235000005824 Zea mays ssp. parviglumis Nutrition 0.000 claims description 14
- 235000002017 Zea mays subsp mays Nutrition 0.000 claims description 14
- 235000005822 corn Nutrition 0.000 claims description 14
- 235000011187 glycerol Nutrition 0.000 claims description 14
- 229910052943 magnesium sulfate Inorganic materials 0.000 claims description 14
- 235000019341 magnesium sulphate Nutrition 0.000 claims description 14
- 239000002609 medium Substances 0.000 claims description 13
- 235000013619 trace mineral Nutrition 0.000 claims description 12
- 239000011573 trace mineral Substances 0.000 claims description 12
- BJHIKXHVCXFQLS-PUFIMZNGSA-N D-psicose Chemical compound OC[C@@H](O)[C@@H](O)[C@@H](O)C(=O)CO BJHIKXHVCXFQLS-PUFIMZNGSA-N 0.000 claims description 11
- 239000012526 feed medium Substances 0.000 claims description 11
- 229930027917 kanamycin Natural products 0.000 claims description 11
- SBUJHOSQTJFQJX-NOAMYHISSA-N kanamycin Chemical compound O[C@@H]1[C@@H](O)[C@H](O)[C@@H](CN)O[C@@H]1O[C@H]1[C@H](O)[C@@H](O[C@@H]2[C@@H]([C@@H](N)[C@H](O)[C@@H](CO)O2)O)[C@H](N)C[C@@H]1N SBUJHOSQTJFQJX-NOAMYHISSA-N 0.000 claims description 11
- 229960000318 kanamycin Drugs 0.000 claims description 11
- 229930182823 kanamycin A Natural products 0.000 claims description 11
- 108010079058 casein hydrolysate Proteins 0.000 claims description 8
- UXVMQQNJUSDDNG-UHFFFAOYSA-L Calcium chloride Chemical compound [Cl-].[Cl-].[Ca+2] UXVMQQNJUSDDNG-UHFFFAOYSA-L 0.000 claims description 7
- 239000001110 calcium chloride Substances 0.000 claims description 7
- 229910001628 calcium chloride Inorganic materials 0.000 claims description 7
- 229910000402 monopotassium phosphate Inorganic materials 0.000 claims description 7
- 235000019796 monopotassium phosphate Nutrition 0.000 claims description 7
- 238000002360 preparation method Methods 0.000 claims description 7
- YWYZEGXAUVWDED-UHFFFAOYSA-N triammonium citrate Chemical compound [NH4+].[NH4+].[NH4+].[O-]C(=O)CC(O)(CC([O-])=O)C([O-])=O YWYZEGXAUVWDED-UHFFFAOYSA-N 0.000 claims description 7
- GNSKLFRGEWLPPA-UHFFFAOYSA-M potassium dihydrogen phosphate Chemical compound [K+].OP(O)([O-])=O GNSKLFRGEWLPPA-UHFFFAOYSA-M 0.000 claims description 6
- LWIHDJKSTIGBAC-UHFFFAOYSA-K potassium phosphate Substances [K+].[K+].[K+].[O-]P([O-])([O-])=O LWIHDJKSTIGBAC-UHFFFAOYSA-K 0.000 claims description 6
- 239000002054 inoculum Substances 0.000 claims description 5
- 238000004519 manufacturing process Methods 0.000 claims description 3
- 241000209149 Zea Species 0.000 claims 2
- 238000010353 genetic engineering Methods 0.000 abstract description 2
- 108090000790 Enzymes Proteins 0.000 description 135
- 102000004190 Enzymes Human genes 0.000 description 135
- 230000000694 effects Effects 0.000 description 59
- 108090000623 proteins and genes Proteins 0.000 description 17
- 238000006243 chemical reaction Methods 0.000 description 15
- RFSUNEUAIZKAJO-ARQDHWQXSA-N Fructose Chemical compound OC[C@H]1O[C@](O)(CO)[C@@H](O)[C@@H]1O RFSUNEUAIZKAJO-ARQDHWQXSA-N 0.000 description 13
- 240000008042 Zea mays Species 0.000 description 12
- RFSUNEUAIZKAJO-VRPWFDPXSA-N D-Fructose Natural products OC[C@H]1OC(O)(CO)[C@@H](O)[C@@H]1O RFSUNEUAIZKAJO-VRPWFDPXSA-N 0.000 description 10
- 230000003197 catalytic effect Effects 0.000 description 10
- 102000004169 proteins and genes Human genes 0.000 description 10
- 238000004458 analytical method Methods 0.000 description 8
- 235000018102 proteins Nutrition 0.000 description 8
- 230000007935 neutral effect Effects 0.000 description 7
- 239000000843 powder Substances 0.000 description 7
- 244000068988 Glycine max Species 0.000 description 6
- 235000010469 Glycine max Nutrition 0.000 description 6
- 239000001888 Peptone Substances 0.000 description 6
- 108010080698 Peptones Proteins 0.000 description 6
- 241000193453 [Clostridium] cellulolyticum Species 0.000 description 6
- 230000002378 acidificating effect Effects 0.000 description 6
- 230000008901 benefit Effects 0.000 description 6
- 235000019319 peptone Nutrition 0.000 description 6
- LKDRXBCSQODPBY-JDJSBBGDSA-N D-allulose Chemical compound OCC1(O)OC[C@@H](O)[C@@H](O)[C@H]1O LKDRXBCSQODPBY-JDJSBBGDSA-N 0.000 description 5
- 241000883281 [Clostridium] cellulolyticum H10 Species 0.000 description 5
- 238000004128 high performance liquid chromatography Methods 0.000 description 5
- 239000000758 substrate Substances 0.000 description 5
- 239000002253 acid Substances 0.000 description 4
- 238000006555 catalytic reaction Methods 0.000 description 4
- 238000009472 formulation Methods 0.000 description 4
- 239000001963 growth medium Substances 0.000 description 4
- 239000000203 mixture Substances 0.000 description 4
- 239000013612 plasmid Substances 0.000 description 4
- 239000000243 solution Substances 0.000 description 4
- 239000000126 substance Substances 0.000 description 4
- 229930091371 Fructose Natural products 0.000 description 3
- 239000005715 Fructose Substances 0.000 description 3
- 238000006911 enzymatic reaction Methods 0.000 description 3
- 239000013613 expression plasmid Substances 0.000 description 3
- 235000013305 food Nutrition 0.000 description 3
- 230000000813 microbial effect Effects 0.000 description 3
- 238000005065 mining Methods 0.000 description 3
- 239000006228 supernatant Substances 0.000 description 3
- 238000012360 testing method Methods 0.000 description 3
- 241000589155 Agrobacterium tumefaciens Species 0.000 description 2
- 241000276408 Bacillus subtilis subsp. subtilis str. 168 Species 0.000 description 2
- 108091028043 Nucleic acid sequence Proteins 0.000 description 2
- 241000192031 Ruminococcus Species 0.000 description 2
- 229930006000 Sucrose Natural products 0.000 description 2
- CZMRCDWAGMRECN-UGDNZRGBSA-N Sucrose Chemical compound O[C@H]1[C@H](O)[C@@H](CO)O[C@@]1(CO)O[C@@H]1[C@H](O)[C@@H](O)[C@H](O)[C@@H](CO)O1 CZMRCDWAGMRECN-UGDNZRGBSA-N 0.000 description 2
- 241001147801 [Clostridium] scindens Species 0.000 description 2
- 239000003513 alkali Substances 0.000 description 2
- 125000003275 alpha amino acid group Chemical group 0.000 description 2
- 150000001413 amino acids Chemical class 0.000 description 2
- 235000013361 beverage Nutrition 0.000 description 2
- 235000009508 confectionery Nutrition 0.000 description 2
- 238000010276 construction Methods 0.000 description 2
- 239000013078 crystal Substances 0.000 description 2
- 238000012136 culture method Methods 0.000 description 2
- 238000011161 development Methods 0.000 description 2
- 238000005516 engineering process Methods 0.000 description 2
- 230000002255 enzymatic effect Effects 0.000 description 2
- 230000008569 process Effects 0.000 description 2
- 239000000047 product Substances 0.000 description 2
- 230000009257 reactivity Effects 0.000 description 2
- 238000011218 seed culture Methods 0.000 description 2
- 238000013112 stability test Methods 0.000 description 2
- 239000005720 sucrose Substances 0.000 description 2
- 229920008327 Carbomix Polymers 0.000 description 1
- OKTJSMMVPCPJKN-UHFFFAOYSA-N Carbon Chemical compound [C] OKTJSMMVPCPJKN-UHFFFAOYSA-N 0.000 description 1
- WQZGKKKJIJFFOK-IVMDWMLBSA-N D-allopyranose Chemical compound OC[C@H]1OC(O)[C@H](O)[C@H](O)[C@@H]1O WQZGKKKJIJFFOK-IVMDWMLBSA-N 0.000 description 1
- 208000007976 Ketosis Diseases 0.000 description 1
- 235000000434 Melocanna baccifera Nutrition 0.000 description 1
- 241001497770 Melocanna baccifera Species 0.000 description 1
- 241000134861 Ruminococcus sp. Species 0.000 description 1
- 240000006365 Vitis vinifera Species 0.000 description 1
- 235000014787 Vitis vinifera Nutrition 0.000 description 1
- 241001246487 [Clostridium] bolteae Species 0.000 description 1
- 239000007864 aqueous solution Substances 0.000 description 1
- QVGXLLKOCUKJST-UHFFFAOYSA-N atomic oxygen Chemical compound [O] QVGXLLKOCUKJST-UHFFFAOYSA-N 0.000 description 1
- 235000015173 baked goods and baking mixes Nutrition 0.000 description 1
- 230000009286 beneficial effect Effects 0.000 description 1
- 230000015572 biosynthetic process Effects 0.000 description 1
- 238000009835 boiling Methods 0.000 description 1
- 239000006227 byproduct Substances 0.000 description 1
- 230000008859 change Effects 0.000 description 1
- 239000003610 charcoal Substances 0.000 description 1
- 239000007795 chemical reaction product Substances 0.000 description 1
- 238000012258 culturing Methods 0.000 description 1
- 235000013365 dairy product Nutrition 0.000 description 1
- 230000003247 decreasing effect Effects 0.000 description 1
- 235000011850 desserts Nutrition 0.000 description 1
- 230000029087 digestion Effects 0.000 description 1
- 229940079593 drug Drugs 0.000 description 1
- 239000003814 drug Substances 0.000 description 1
- 235000013399 edible fruits Nutrition 0.000 description 1
- 238000003028 enzyme activity measurement method Methods 0.000 description 1
- 238000006345 epimerization reaction Methods 0.000 description 1
- 238000000605 extraction Methods 0.000 description 1
- 239000000706 filtrate Substances 0.000 description 1
- 235000003599 food sweetener Nutrition 0.000 description 1
- 239000012634 fragment Substances 0.000 description 1
- 230000036541 health Effects 0.000 description 1
- 235000015243 ice cream Nutrition 0.000 description 1
- 238000009776 industrial production Methods 0.000 description 1
- 150000002584 ketoses Chemical class 0.000 description 1
- 239000012528 membrane Substances 0.000 description 1
- 238000012986 modification Methods 0.000 description 1
- 230000004048 modification Effects 0.000 description 1
- 150000002772 monosaccharides Chemical class 0.000 description 1
- QZXQKYMXZRGKLB-UHFFFAOYSA-N n,n'-bis(2-phenylethyl)oxamide Chemical compound C=1C=CC=CC=1CCNC(=O)C(=O)NCCC1=CC=CC=C1 QZXQKYMXZRGKLB-UHFFFAOYSA-N 0.000 description 1
- 229910052760 oxygen Inorganic materials 0.000 description 1
- 239000001301 oxygen Substances 0.000 description 1
- PJNZPQUBCPKICU-UHFFFAOYSA-N phosphoric acid;potassium Chemical compound [K].OP(O)(O)=O PJNZPQUBCPKICU-UHFFFAOYSA-N 0.000 description 1
- 230000001737 promoting effect Effects 0.000 description 1
- 230000036632 reaction speed Effects 0.000 description 1
- 238000011084 recovery Methods 0.000 description 1
- 238000004064 recycling Methods 0.000 description 1
- 238000007086 side reaction Methods 0.000 description 1
- 238000002415 sodium dodecyl sulfate polyacrylamide gel electrophoresis Methods 0.000 description 1
- 239000003765 sweetening agent Substances 0.000 description 1
- 230000001131 transforming effect Effects 0.000 description 1
- XLYOFNOQVPJJNP-UHFFFAOYSA-N water Substances O XLYOFNOQVPJJNP-UHFFFAOYSA-N 0.000 description 1
Images
Classifications
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12N—MICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
- C12N9/00—Enzymes; Proenzymes; Compositions thereof; Processes for preparing, activating, inhibiting, separating or purifying enzymes
- C12N9/90—Isomerases (5.)
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12N—MICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
- C12N15/00—Mutation or genetic engineering; DNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purification; Use of hosts therefor
- C12N15/09—Recombinant DNA-technology
- C12N15/63—Introduction of foreign genetic material using vectors; Vectors; Use of hosts therefor; Regulation of expression
- C12N15/74—Vectors or expression systems specially adapted for prokaryotic hosts other than E. coli, e.g. Lactobacillus, Micromonospora
- C12N15/75—Vectors or expression systems specially adapted for prokaryotic hosts other than E. coli, e.g. Lactobacillus, Micromonospora for Bacillus
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12P—FERMENTATION OR ENZYME-USING PROCESSES TO SYNTHESISE A DESIRED CHEMICAL COMPOUND OR COMPOSITION OR TO SEPARATE OPTICAL ISOMERS FROM A RACEMIC MIXTURE
- C12P19/00—Preparation of compounds containing saccharide radicals
- C12P19/02—Monosaccharides
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12P—FERMENTATION OR ENZYME-USING PROCESSES TO SYNTHESISE A DESIRED CHEMICAL COMPOUND OR COMPOSITION OR TO SEPARATE OPTICAL ISOMERS FROM A RACEMIC MIXTURE
- C12P19/00—Preparation of compounds containing saccharide radicals
- C12P19/24—Preparation of compounds containing saccharide radicals produced by the action of an isomerase, e.g. fructose
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Y—ENZYMES
- C12Y501/00—Racemaces and epimerases (5.1)
- C12Y501/03—Racemaces and epimerases (5.1) acting on carbohydrates and derivatives (5.1.3)
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12N—MICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
- C12N2800/00—Nucleic acids vectors
- C12N2800/10—Plasmid DNA
- C12N2800/101—Plasmid DNA for bacteria
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12N—MICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
- C12N2800/00—Nucleic acids vectors
- C12N2800/22—Vectors comprising a coding region that has been codon optimised for expression in a respective host
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12R—INDEXING SCHEME ASSOCIATED WITH SUBCLASSES C12C - C12Q, RELATING TO MICROORGANISMS
- C12R2001/00—Microorganisms ; Processes using microorganisms
- C12R2001/01—Bacteria or Actinomycetales ; using bacteria or Actinomycetales
- C12R2001/07—Bacillus
- C12R2001/125—Bacillus subtilis ; Hay bacillus; Grass bacillus
Landscapes
- Chemical & Material Sciences (AREA)
- Life Sciences & Earth Sciences (AREA)
- Organic Chemistry (AREA)
- Health & Medical Sciences (AREA)
- Engineering & Computer Science (AREA)
- Genetics & Genomics (AREA)
- Zoology (AREA)
- Wood Science & Technology (AREA)
- Bioinformatics & Cheminformatics (AREA)
- General Engineering & Computer Science (AREA)
- General Health & Medical Sciences (AREA)
- Biotechnology (AREA)
- Biochemistry (AREA)
- Microbiology (AREA)
- Molecular Biology (AREA)
- Biomedical Technology (AREA)
- Chemical Kinetics & Catalysis (AREA)
- General Chemical & Material Sciences (AREA)
- Medicinal Chemistry (AREA)
- Physics & Mathematics (AREA)
- Biophysics (AREA)
- Plant Pathology (AREA)
- Enzymes And Modification Thereof (AREA)
- Micro-Organisms Or Cultivation Processes Thereof (AREA)
Abstract
The invention belongs to the technical field of genetic engineering and fermentation engineering, and provides D-psicose-3-epimerase from clostridium and application thereof, wherein a nucleotide sequence for encoding the D-psicose-3-epimerase is shown as SEQ ID No.1, and the nucleotide sequence is obtained through codon optimization.
Description
Technical Field
The invention belongs to the technical field of genetic engineering and fermentation engineering, and particularly relates to a method for efficiently expressing D-psicose-3-epimerase in bacillus subtilis.
Background
Psicose (allose) is an epimer of D-fructose at the C-3 position, is white powder, is transparent and colorless in aqueous solution, is stable at normal temperature and normal pressure, exists in natural foods such as fruits, raisins, figs and the like, has sweetness of 70% of sucrose and calorie of 0.3% of sucrose, is a novel sweetener, and is a monosaccharide which naturally exists in nature but has a very small content, and is also called rare sugar. Psicose was approved by the FDA in 2015, and can be used in baked goods, candies, sweet pastes, dairy products, ice creams, desserts, beverages, and other products. The psicose has excellent processability, stability, high tolerance and strong capability of removing active oxygen, and is widely used in the fields of food, daily chemicals, health care products, medicines, beverages and the like.
D-psicose is present in a rare amount in nature, and is generally produced by enzymatic conversion at present. D-psicose-3-epimerase (i.e., DPE enzyme) is capable of converting cheaper D-fructose into D-psicose. Thus, DPE enzyme is a key factor in the biosynthesis of D-psicose. There are twenty types of DPE enzymes reported in the literature, namely, agrobacterium tumefaciens (Agrobacterium tumefaciens) from literature 1 (Samir R.D. et al Enzyme and Microbial Technology, 2020,140,109605), clostridium scintinus (Clostridium scindens) from Ruminococcus (Ruminococcus sp.) from literature 2 (Fu, G.et al Biotechnology and Applied Biochemistry,2019, 67 (5), 812-818), clostridium cellulolyticum (Clostridium cellulolyticum) from literature 3 (Su, L.et al Microbial Cell Factories, 2018, 17, 188), clostridium pallidum (Clostridium bolteae) from literature 4 (Jia. M. et al Applied Microbiology andBiotechnology,2014,98,717-725), clostridium scintinus (Clostridium scindens) from He, W.et al Journal of Agricultural and Food Chemistry, 2016, 64 (28), clostridium scintinus (3801-5707), clostridium (Mu, W.et al Biotechnology Letters, 2013, 35 (9), 1481), and the like. Wherein, the DPE enzyme from C.cellulolyticum in document 3 is heterologously expressed in bacillus subtilis, can reach 2246U/mL under the condition of a 3.6L fermentation tank, is the highest enzyme activity reported at present, but the optimal catalysis pH is alkaline condition, which limits the industrialized application to a certain extent.
The high temperature is advantageous in accelerating the reaction speed and suppressing the growth of harmful bacteria in industrial production. Most DPE enzymes found at present have poor thermal stability, are rapidly deactivated at temperatures above 50 ℃ and are not easy to store at normal temperature. And the known catalytic reaction conditions of the enzyme are slightly alkaline, and the high-temperature catalytic conditions of the alkalinity can lead the sugar solution to generate non-enzymatic browning, increase byproducts and reduce the yield. Therefore, it is important to provide DPE enzyme which has good thermal stability and can still maintain high catalytic activity under acidic or neutral conditions for the development of industrialization of D-psicose, and the present invention analyzes Protein crystals of the enzyme (method references Chan, H.et al Protein & Cell, 2012, 3, 123-131), and finds the root cause of the activity change.
Disclosure of Invention
In order to solve the problems in the prior art, the invention obtains the D-psicose-3-epimerase with high expression and good stability, namely DPE enzyme by a gene mining method. Aiming at the problem that DPE enzyme has low expression efficiency in bacillus subtilis, the nucleotide sequence for encoding DPE enzyme is subjected to codon optimization, and the protein expression level is improved under the condition of not changing the protein sequence; the provided D-psicose-3-epimerase can obtain higher enzyme activity under neutral and even acidic conditions and at higher temperature.
After the expression of DPE enzyme is optimized by the invention, the enzyme activity can reach 354U/mL at maximum under the condition of shaking culture, and can reach 2578U/mL under the condition of optimized fermentation in a 3.6L fermentation tank. Meanwhile, the invention also provides a method for obtaining DPE enzyme through mass fermentation of a 30L fermentation tank, wherein the enzyme activity is as high as 2660U/mL, and the D-psicose-3-epimerase with high expression and good stability is obtained.
Specifically, according to the first aspect of the invention, a D-psicose-3-epimerase with improved expression level and good stability is provided, and a nucleotide sequence encoding the D-psicose-3-epimerase is shown as SEQ ID No.1 after codon optimization.
The invention provides a gene for encoding the D-psicose-3-epimerase of claim 1, wherein the nucleotide sequence of the gene is shown as SEQ ID No.1.
According to a second aspect of the present invention there is provided a host bacterium or recombinant vector expressing the D-psicose-3-epimerase of the first aspect of the present invention, the recombinant vector or host bacterium being a recombinant vector or host bacterium comprising a nucleotide sequence encoding the D-psicose-3-epimerase, the nucleotide sequence encoding the D-psicose-3-epimerase being as shown in SEQ ID No.1.
According to a preferred embodiment, the host bacterium is bacillus subtilis.
According to one embodiment, the host bacterium is bacillus subtilis b.
According to a preferred embodiment, the recombinant vector is pMA5.
According to a third aspect of the present invention there is provided a process for the preparation of D-psicose-3-epimerase, wherein B.subtilis is used for the fermentative preparation of D-psicose-3-epimerase.
According to a preferred embodiment, the medium formulation used in the method is as follows; 20. 20 g/L of soybean peptone, 5 g/L of corn steep liquor dry powder, 1 g/L of ammonium citrate, 50 g/L of glycerin, 2.31 g/L of monopotassium phosphate, 0.2 g/L of magnesium sulfate, 0.2 g/L of calcium chloride, 20 mug/mL of kanamycin final concentration and 20 mL of microelement liquid. The feed medium formulation is as follows: 200. 200 g/L of glycerol, 7.89 g/L of magnesium sulfate, 100. 100 g/L of soybean peptone, 3.5 g/L of corn steep liquor dry powder and 20 mL of trace element liquid. The fermentation culture conditions were as follows: 10 The feed was fed at a constant rate at a temperature of 37℃and a rotation speed of 300 rpm, pH=7.0, air flow rate of 1.5 VVM and cultured for 48 hours.
Further optimizing the conditions of the fermentation culture method, wherein the culture medium used in the method comprises the following formula:
20. 20 g/L casein hydrolysate, 15 g/L corn steep liquor extract, 1 g/L ammonium citrate, 40g/L glycerin, 2.31 g/L monopotassium phosphate, 0.2 g/L magnesium sulfate, 0.2 g/L calcium chloride, 20 mug/mL kanamycin final concentration and 20 mL trace element liquid. Feed medium: glycerin 100 g/L, magnesium sulfate 7.89 g/L, casein hydrolysate 100 g/L, corn steep liquor extract 10g/L and trace element liquid 20 mL, wherein the feeding mode is as follows: 10 mL/h constant-speed feeding. The fermentation conditions were 37℃at 400 rpm, pH=7.0 and air flow rate 2.0 VVM for 48 hours.
According to a fourth aspect of the present invention there is provided the use of a D-psicose-3-epimerase according to the first aspect of the present invention, a host bacterium or a recombinant vector according to the second aspect of the present invention for the preparation of D-psicose.
The excellent effects of the D-psicose-3-epimerase and the fermentation method disclosed by the invention mainly lie in the following aspects:
(1) A highly expressed D-psicose-3-epimerase having good thermostability and capable of reacting under neutral conditions was found. Has high activity in 55-65deg.C, and half-life of 9.3h at 60deg.C. There is a relatively good activity (greater than 80%) at pH 6.0-9.0, the best catalytic activity at ph=7.0, and still the higher catalytic activity at weak acid (ph=6.5).
(2) By utilizing a codon optimization method, the protein expression level is improved under the condition of not changing the protein sequence, the enzyme activity is improved from 126U/mL to 354U/mL, the enzyme activity is greatly improved, and the enzyme activity can reach 2578U/mL under the optimized fermentation condition of a 3.6L fermentation tank.
(3) Provides a large amount of fermentation method of the D-psicose-3-epimerase in a 30L fermentation tank, ensures that the DPE enzyme activity is as high as 2660U/mL, and provides a foundation for the industrial application of the DPE enzyme.
(4) The D-psicose-3-epimerase provided by the invention can obtain higher enzyme activity under neutral and even acidic conditions and at higher temperature.
(5) The D-psicose-3-epimerase provided by the invention has the advantages that the amino acid of a key site is changed with that of the existing DPE enzyme, so that the DPE enzyme can reach very high enzyme activity under neutral or even acidic conditions, and compared with the DPE enzyme in the same volume of a fermentation tank, the optimal activity pH=7.0 of the DPE enzyme provided by the invention has the highest enzyme activity of 2578U/mL. 95% of the highest enzyme activity at ph=6.5, 2449U/mL, and 90% of the highest enzyme activity at ph=6, 2320U/mL.
Drawings
Fig. 1: and (5) analyzing a DPE enzyme phylogenetic tree obtained by gene mining.
FIG. 2 expression of DPE enzymes of different branches in Bacillus subtilis.
FIG. 3 plasmid construction map of pMA5DPE enzyme.
Fig. 4: comparison of the expression level of DPE enzyme after codon optimization.
Fig. 5: DPE enzyme takes fructose as a substrate to catalyze and synthesize psicose. Wherein, FIG. 5A shows the analysis result of HPLC of psicose and ketose standard substance; FIG. 5B shows the results of HPLC analysis of fructose standards; FIG. 5C shows the results of HPLC analysis of the reaction product of DPE enzyme with fructose.
FIG. 6 stability test results of DPE enzyme. Wherein fig. 6A: test results of pH versus catalytic activity; fig. 6B: test results of temperature versus catalytic Activity FIG. 6C Co 2+ Test results for catalytic activity; fig. 6D: DPE enzyme activity changes over time at 60 ℃.
Detailed Description
The present invention will be described in detail with reference to examples and fig. 1 to 6.
Specifically, according to the first aspect of the invention, a D-psicose-3-epimerase with improved expression quantity and good stability is provided, and a sequence after codon optimization is shown as SEQ ID No.1.
According to a second aspect of the present invention there is provided a host bacterium or recombinant vector expressing the D-psicose-3-epimerase of the first aspect of the present invention, the recombinant vector or host bacterium being a vector or host bacterium comprising a nucleotide sequence encoding the D-psicose-3-epimerase, the nucleotide sequence encoding the D-psicose-3-epimerase being shown in SEQ ID No.1.
According to a preferred embodiment, the host bacterium is bacillus subtilis.
According to one embodiment, the host bacterium is bacillus subtilis b.
According to a preferred embodiment, the recombinant vector is pMA5.
According to a third aspect of the present invention there is provided a process for the preparation of D-psicose-3-epimerase, wherein B.subtilis is used for the fermentative preparation of D-psicose-3-epimerase.
According to a preferred embodiment, the medium formulation used in the method is as follows; 20. 20 g/L of soybean peptone, 5 g/L of corn steep liquor dry powder, 1 g/L of ammonium citrate, 50 g/L of glycerin, 2.31 g/L of monopotassium phosphate, 0.2 g/L of magnesium sulfate, 0.2 g/L of calcium chloride, 20 mug/mL of kanamycin final concentration and 20 mL of microelement liquid. The feed medium formulation is as follows: 200. 200 g/L of glycerol, 7.89 g/L of magnesium sulfate, 100. 100 g/L of soybean peptone, 3.5 g/L of corn steep liquor dry powder and 20 mL of trace element liquid. The fermentation culture conditions were as follows: 10 The feed was fed at a constant rate at a temperature of 37℃and a rotational speed of 300 rpm, at a pH=7.0, at an air flow rate of 1.5 VVM and cultured for 48 hours.
Further optimizing the conditions of the fermentation culture method, wherein the culture medium used in the method comprises the following formula:
20. 20 g/L casein hydrolysate, 15 g/L corn steep liquor extract, 1 g/L ammonium citrate, 40g/L glycerin, 2.31 g/L monopotassium phosphate, 0.2 g/L magnesium sulfate, 0.2 g/L calcium chloride, 20 mug/mL kanamycin final concentration and 20 mL trace element liquid. Feed medium: glycerin 100 g/L, magnesium sulfate 7.89 g/L, casein hydrolysate 100 g/L, corn steep liquor extract 10g/L and trace element liquid 20 mL, wherein the feeding mode is as follows: 10 mL/h constant-speed feeding. The fermentation conditions were 37℃at 400 rpm, pH=7.0 and air flow rate 2.0 VVM for 48 hours.
According to a fourth aspect of the present invention there is provided the use of a D-psicose-3-epimerase according to the first aspect of the present invention, a host bacterium or a recombinant vector according to the second aspect of the present invention for the preparation of D-psicose.
The invention also provides a gene for encoding the D-psicose-3-epimerase, and the nucleotide sequence of the gene is SEQ ID No.1.
Example 1: mining DPE enzyme from Clostridium genome
1954 transcriptomes SRA (Sequence Read Archive) data of Clostridium species in NCBI (National Center for Biotechnology Information ) were downloaded in full and spliced to build a local Clostridium database. Taking DPE enzyme from Ruminococcus sp as query sequence, 146 similarity over 8e is obtained after local BLAST to local database -18 Is a protein sequence of (a). The obtained protein sequence was subjected to weight removal to obtain 95 nucleotide sequences. The amino acid sequence encoded by the 95 nucleotide sequences is treed by the method of Jukes-Cantor and Neighbor-Joing. From the resulting developmental tree, it can be seen that all DPE enzymes can be divided into 5 branches, the specific branches are shown in FIG. 1, and branch I, branch II, branch III, branch IV and branch V respectively. The DPE enzyme from the branch I source (hereinafter referred to as DPE enzyme) was found to have the highest expression efficiency under the same conditions by taking one sequence from 5 branches, respectively, and the DPE enzyme from the branch I source was found to have the best expression efficiency as compared with the case shown in FIG. 2, and further studies found to have stability and catalytic activity superior to those of the known DPE enzyme.
Example 2: construction and expression of original DPE enzyme expression plasmid
1) PCR of DPE enzyme sequence
Primers containing homology arms were designed as follows:
DPE-F:GTGCCACCTAAAAAGGAGCGATTTACATATGAAACATGGTATATAC
DPE-R:GAGGTGAATTTCGACCTCTAGATCAGGAGTGTTTATGACATTCTAATAC
PCR is performed by using the synthesized nucleotide sequence of DPE enzyme as a template to obtain a gene fragment containing a homology arm with the expression plasmid.
2) pMA5 is subjected to double digestion by NedI and MulI, then is subjected to gel recovery, and is recombined with a DPE enzyme nucleotide sequence obtained by PCR by using Gibson and then is transferred into eco.li DH5 alpha competent cells. Plasmid extraction was performed on positive clones to obtain pMA5DPEO, and FIG. 3 shows a plasmid map of pMA5 DPEO.
3) Transferring the plasmid obtained in the step 2) into a competent cell of the bacillus subtilis B.subtilis 168 to obtain recombinant bacillus subtilis B.subtilis 168-DEPaseO.
4) Picking up the recombinant bacillus subtilis 168-DEPaseO obtained in the step 3), inoculating positive transformants on LB medium plates containing kanamycin (with a final concentration of 50 mug/mL), inoculating the positive transformants in 30 mL LB medium containing kanamycin (with a final concentration of 50 mug/mL), and culturing at 30 ℃ and 200 rpm overnight; the culture was carried out in LB medium of 50 mL or more at 30℃and 200 rpm for 48 hours according to an inoculum size of 2%. The cells were collected from the fermentation broth 5000 xg, washed with PBS buffer, resuspended and diluted 5-fold. After the cells are broken by using an ultrasonic breaker, centrifuging at 12000 rpm for 15min, collecting supernatant, and obtaining the supernatant as crude enzyme liquid.
And (3) performing enzyme activity measurement on the crude enzyme solution in the step (4). The enzyme reaction conditions are as follows: 100 g/L D-fructose prepared by HEPS (pH 7.0) is used as a substrate, 800 mu L of the substrate and 200 mu L of diluted enzyme solution are precisely reacted for 10 min, the reaction is quenched by boiling, and the reaction is filtered by a microporous filter membrane with the thickness of 0.45 mu m, and the filtrate is subjected to high performance liquid analysis.
The high performance liquid chromatography analysis was performed as follows: the instrument was an Agilent1260 high performance liquid chromatograph equipped with a differential detector, the column was a Carbomix Pb-NP10 column (8%, 7.8X300 mm,10 μm, sirocco technology), the mobile phase was water, the flow rate was 0.5 mL/min, and the column temperature was 70 ℃.
The DPE enzyme activity expressed by recombinant Bacillus subtilis B.subtilis 168-DEPaseO was determined by high performance liquid chromatography to be 126U/mL.
Example 3: DPE enzyme codon optimization for improving expression efficiency
1) In order to increase the expression efficiency of DPE enzyme in Bacillus subtilis. The DPE enzyme nucleotide sequence is optimally screened against codons of bacillus subtilis, and the finally optimized sequence is determined by the expression quantity as follows (SEQ ID No. 1):
ATGAAACATGGCATTTATTATGCATATTGGGAACAAGAATGGGAAGCAGATTATAAATATTATATTGAAAAAGTTGCAAAACTGGGCTTTGATATTCTGGAAATTGCAGCATCACCGCTGCCGTTTTATTCAGATAACCAAATTAATGAACTGAAAGCATGCGCAAGAGGCAATGGCATTACACTGACAGTTGGCCATGGCCCGTCAGCAGAACAAAATCTGTCATCACCGGATCCGGATATTAGAAAAAATGCAAAAGCATTTTATACAGATCTGCTGAAAAGACTGTATAAACTGGATGTTCATCTGATCGGCGGCGCACTGTATTCATATTGGCCGATTGATTATACAAAAACAATTGATAAAAAAGGCGATTGGGAAAGATCAGTTGAATCAGTTAGAGAAGTTGCAAAAGTTGCAGAAGCATGCGGCGTTGATTTCTGCCTTGAAGTTCTGAATAGATTTGAAAATTATCTGATTAATACAGCACAAGAAGGCGTTGATTTTGTTAAACAAGTTGATCATAATAACGTTAAAGTTATGCTGGACACATTTCACATGAATATTGAAGAAGATTCAATTGGCGGCGCAATTAGAACAGCGGGCTCATATCTGGGCCATCTGCATACGGGCGAATGCAATAGAAAAGTTCCGGGCAGAGGCAGAATTCCGTGGGTTGAAATTGGCGAAGCACTGGCAGATATTGGCTATAATGGCTCAGTTGTTATGGAACCGTTTGTTAGAATGGGCGGCACAGTTGGCTCAAATATTAAAGTTTGGAGAGATATTTCAAATGGCGCAGATGAAAAAATGCTGGATAGAGAAGCACAAGCAGCACTGGATTTTTCAAGATATGTTCTGGAATGCCATAAACATTCATAA
the nucleotide sequence before optimization is shown as SEQ ID No.2, and the amino acid sequence after optimization is shown as SEQ ID No. 3.
SEQ ID No.2 is shown below:
SEQ ID No.2
ATGAAACATGGTATATACTACGCATATTGGGAACAAGAATGGGAAGCTGATTACAAATACTATATTGAGAAGGTTGCAAAGCTTGGTTTTGATATTCTAGAGATTGCAGCTTCACCGCTACCTTTTTACAGTGACAAACAGATTAATGAGCTCAAGGCATGTGCCAGAGGCAATGGAATTACACTTACGGTAGGCCATGGGCCTAGTGCAGAACAAAACCTGTCTTCTCCCGACCCCGATATTCGCAAAAATGCTAAAGCTTTTTATACCGATTTACTCAAACGACTTTACAAGCTGGATGTACATTTGATAGGTGGGGCTTTATATTCTTATTGGCCGATAGATTACACAAAGACAATTGATAAAAAAGGCGATTGGGAACGCAGCGTTGAAAGTGTTCGAGAAGTTGCTAAGGTGGCCGAAGCCTGTGGAGTGGATTTCTGCCTAGAGGTTCTTAATAGATTTGAGAATTATTTAATTAACACAGCACAAGAGGGTGTAGATTTTGTAAAACAGGTTGACCATAACAATGTAAAGGTAATGCTTGATACCTTCCATATGAATATTGAGGAAGATAGTATCGGAGGTGCAATCAGGACTGCGGGCTCTTACTTGGGACATTTACACACTGGCGAATGTAATCGTAAAGTTCCCGGCAGAGGAAGAATTCCATGGGTAGAAATTGGTGAGGCTCTTGCTGACATAGGTTATAACGGTAGTGTTGTTATGGAACCTTTTGTTAGAATGGGCGGAACTGTCGGATCTAATATTAAGGTTTGGCGTGACATTAGTAACGGTGCAGATGAGAAAATGCTGGATAGAGAAGCACAGGCCGCACTTGATTTCTCCAGATATGTATTAGAATGTCATAAACACTCCTGA
SEQ ID No.3 is shown below:
SEQ ID No.3
MKHGIYYAYWEQEWEADYKYYIEKVAKLGFDILEIAASPLPFYSDNQINELKACARGNGITLTVGHGPSAEQNLSSPDPDIRKNAKAFYTDLLKRLYKLDVHLIGGALYSYWPIDYTKTIDKKGDWERSVESVREVAKVAEACGVDFCLEVLNRFENYLINTAQEGVDFVKQVDHNNVKVMLDTFHMNIEEDSIGGAIRTAGSYLGHLHTGECNRKVPGRGRIPWVEIGEALADIGYNGSVVMEPFVRMGGTVGSNIKVWRDISNGADEKMLDREAQAALDFSRYVLECHKHS
2) And (3) transforming the optimized DPE enzyme expression plasmid into B.subtilis 168 competent cells to obtain recombinant bacillus subtilis B.subtilis 168-DEPaseY.
3) Recombinant Bacillus subtilis B.subulis 168-DEPaseO and B.subulis 168-DEPaseY were subjected to a small amount of fermentation under the same conditions. After obtaining the cells, after the cells with the same weight are lysed, SDS-PAGE analysis is performed on the supernatant, and the two are compared, and specific comparison results are shown in the accompanying figure 4, so that the concentration of the DPE enzyme after optimization is larger, and the expression quantity is greatly improved.
The enzyme activity of B.subtilis 168-DEPasey was determined by the method of example 2 and reached 354U/mL. The enzyme activity was increased by a factor of 2 compared to recombinant bacillus subtilis without codon optimization, which corresponds to the comparison in fig. 4.
The enzyme reaction solution of the above example was analyzed using D-fructose (5.49, mg/mL) and D-psicose (5.25, mg/mL) produced by Sigma as standard substances, and the sample amount was 10. Mu.L. The analysis results of the standard substances are shown in fig. 5A and fig. 5B. The experimental analysis results in example 3 are shown in fig. 5C. According to the high performance liquid analysis result, the DPE enzyme expressed by the recombinant bacillus subtilis can catalyze epimerization reaction between D-fructose and D-psicose. The novel DPE enzyme discovered in the invention can be used for realizing the bioconversion production of D-psicose, and the enzyme catalytic reaction uses cheaper D-fructose as a substrate, so that the DPE enzyme has the advantages of low cost and great advantages.
To further investigate the performance of DPE enzymes, the acid and alkali resistance, the high temperature resistance, and the durability of DPE enzymes under different experimental conditions were investigated, respectively, see example 4.
Example 4 optimization of the reaction conditions and stability test of DPE enzyme
1) The DPE enzyme obtained by the invention reacts with 100 g/L D-fructose at different pH values respectively, the obtained result is shown in figure 6, the DPE enzyme provided by the invention has relatively good activity (more than 80%) at the pH value of 6.0-9.0, has the best catalytic activity at the pH value of 7.0, and still has higher catalytic activity under the condition of weak acid (pH=6.5). The DPE enzyme has better pH stability.
2) The resulting DPE enzyme was reacted with 100 g/L D-fructose at different temperatures in a buffer at pH 7.0, respectively. The DPE enzyme has better activity at 55-65 ℃ and the optimal reaction temperature is 60 ℃.
3) Co is added into the reaction system 2+ The reaction rate of DPE enzyme can be improved. The obtained DPE enzyme is respectively mixed with Co with different concentrations at 60 DEG C 2+ The reaction was carried out at 2. Mu.M to 32. Mu.M Co 2+ Within the range, the reactivity increases linearly; when Co is 2+ The concentration is more than 50 mu M, and the reactivity is relatively stable. Finally determining Co in the reaction system 2+ A concentration of 0.05. 0.05mM indicates that the DPE enzyme obtained according to the invention requires a lower concentration of Co 2+ An efficient reaction can be achieved.
4) At 0.05mM Co 2+ The half-life of the DPE enzyme at 60℃was determined with participation in the reaction. The enzyme activity was 100% based on the initial enzyme reaction. The DPE enzyme activity decreased slowly with time, and was still 80% active after 12 hours, with a half-life of 9.3 hours at 60 ℃When (1). The enzyme has good heat-resistant advantage and stability advantage, and can be reused. Wherein the relevant properties of the DPE enzyme in respect of thermostability and stability are shown in FIG. 6.
Through the optimization, the optimal reaction conditions of the DPE enzyme in the invention are finally determined as follows: pH=7.0 buffer, 100 g/L D-fructose, 0.05mM Co 2+ ,60℃。
EXAMPLE 5 fermentation of recombinant Bacillus subtilis B.subtilis 168-DEPaseY in a 3.6L fermenter
1) Positive transformants of the recombinant B.subtilis 168-DEPasey obtained in example 3 were picked up on LB medium plates containing kanamycin (final concentration: 50. Mu.g/mL), inoculated in 500mL of LB liquid medium containing kanamycin (final concentration: 50. Mu.g/mL), and cultured at 30℃for 12-14 hours at 200 rpm. The culture was inoculated into a 3.6L fermenter containing 1L fermentation medium (soybean peptone 20 g/L, corn steep liquor dry powder 5 g/L, ammonium citrate 1 g/L, glycerol 50 g/L, potassium dihydrogen phosphate 2.31 g/L, magnesium sulfate 0.2 g/L, calcium chloride 0.2 g/L, kanamycin final concentration 20. Mu.g/mL, trace element liquid 20 mL) at 37℃at 250 rpm, pH=7.0, air flow rate 1.0 VVM for 48 hours according to an inoculum size of 10%. Feed medium: 200. 200 g/L of glycerol, 7.89 g/L of magnesium sulfate, 100. 100 g/L of soybean peptone, 3.5 g/L of corn steep liquor dry powder and 20 mL of trace element liquid.
2) The fermentation broth in step 1) was centrifuged to obtain a cell, and the enzyme activity was measured by the method of example 2, resulting in 1896/U/mL.
Example 6:3.6 Optimization of culture conditions in an L fermenter
1) Optimization of the culture medium. The initial medium in example 5 was replaced with: 20. 20 g/L casein hydrolysate, 15 g/L corn steep liquor extract, 1 g/L ammonium citrate, 40g/L glycerin, 2.31 g/L monopotassium phosphate, 0.2 g/L magnesium sulfate, 0.2 g/L calcium chloride, 20 mug/mL kanamycin final concentration and 20 mL trace element liquid. Feed medium: 100 g/L of glycerin g/L, 7.89 g/L of magnesium sulfate, 100 g/L of casein hydrolysate, 10g/L of corn steep liquor extract and 20. 20 mL of trace element liquid. The fermentation conditions were unchanged, and the enzyme activity was determined to be 2285U/mL.
2) Fermentation conditions are optimized together with the culture medium. The fermentation medium and the feed medium of step 1) were used, and the fermentation conditions were optimized to 37℃at 400 rpm, pH=7.0, and air flow rate of 2.0 VVM for 48 hours. The enzyme activity under this condition was determined to be 2578U/mL.
Example 7: fermenting recombinant Bacillus subtilis B.subtilis 168-DEPaseY in 30L fermenter
1) Seed culture was performed according to the method in example 5. The culture was inoculated at an inoculum size of 2% -5% into a 30L fermenter containing the fermentation medium of example 5 of 15L at 37℃and 300 rpm, pH=7.0, air flow rate of 1.5 VVM for 48 hours. The fermentation was fed at a constant rate (10 mL/h) and the feed medium was the same as in example 5.
2) The fermentation broth in step 1) was centrifuged to obtain a cell, and the enzyme activity was measured by the method of example 2, resulting in 2460U/mL.
Example 8: fermenting recombinant Bacillus subtilis B.subtilis 168-DEPaseY in 30L fermenter under optimized conditions
1) Seed culture was performed according to the method in example 5. 30L fermenters containing 15L of the fermentation medium of example 6 were inoculated at 2% -5% inoculum size, and incubated at 37℃at 400 rpm, pH=7.0, air flow rate 2.0 VVM for 48 hours. The fermentation was fed at a constant rate (10 mL/h) and the feed medium was the same as in example 6.
2) The fermentation broth in step 1) was centrifuged to obtain a cell, and the enzyme activity was measured by the method of example 2, resulting in 2660U/mL. The enzyme activity under the condition of 30L fermentation tank is equivalent to that of 3.6L fermentation tank, and the unit OD is measured simultaneously 600 The enzyme activities of (2) are equivalent in value. The enzyme activity level equivalent to that of a small-volume fermentation tank can be maintained after the volume is enlarged, so the establishment of the method is beneficial to promoting the industrialized development of the enzyme.
Example 9: comparison of DPE enzyme Performance from different sources
The DPE enzyme provided by the invention is compared with DPE enzyme activity obtained in the prior art document, acid and alkali resistance, stability, half life and the like are comprehensively compared, and specific data are shown in table 1:
TABLE 1 comparison of DPE enzymes of different origins
The DPE enzyme activities of different sources in Table 1 are all the best performances, and because of different sources and different characteristics, the best activities cannot be compared under certain same conditions, so that the best performances of the DPE enzyme activities can only be compared by adopting the comprehensive best performances, and as can be seen from Table 1, the optimal pH of the DPE enzyme in the invention is 7.0, the optimal temperature is 60 ℃, and the high enzyme activity 2660U/mL can be obtained by the fermentation method provided by the invention. The acidic reaction condition can reduce the occurrence of side reaction, the reaction can be kept at a higher reaction rate at 60 ℃, and the longer half-life period can realize the recycling of the enzyme.
Compared to the DPE enzyme activity of c.cellulolyticum H10 from document 3 (Su, l.et al Microbial Cell Factories, 2018, 17, 188), the DPE enzyme of c.cellulolyticum H10 has a maximum enzyme activity of 2246U/mL, but its optimal activity is at ph=8, according to document 3 it is reported that the DPE enzyme has an enzyme activity of about 90% of the maximum enzyme activity at ph=7, about 2021U/mL; at ph=6.5, 85% of the highest enzyme activity, approximately 1900U/mL; the pH=6 was 80% of the highest enzyme activity, about 1700U/mL.
The optimal activity of the DPE enzyme provided by the invention is pH=7.0, and the highest enzyme activity is 2660U/mL. 95% of the highest enzyme activity at ph=6.5, 2527U/mL, and 90% of the highest enzyme activity at ph=6, 2394U/mL. And the half-life of the DPE enzyme from C.cellulolyticum H10 is 6.3H, the optimal activity half-life of the DPE enzyme provided by the invention is 9.3H, and the high-temperature stability is better. Compared with the same volume of 3.6L of the fermentation tank, the DPE enzyme provided by the invention has optimal activity pH=7.0 and the highest enzyme activity is 2578U/mL. 95% of the highest enzyme activity at ph=6.5, 2449U/mL, 90% of the highest enzyme activity at ph=6, 2320U/mL; whereas the highest enzyme activity of DPE enzyme of C.cellulolyticum H10 is 2246U/mL, the DPE enzyme obtained by the invention has higher activity under neutral or acidic condition compared with the existing DPE enzyme.
Comparing the sequences of the two, the DPE enzyme provided by the invention has high similarity with DPE enzyme in Clostridium cellulolyticum H. But in combination with analysis of the Protein crystals of both (method references Chan, H. Et al, protein & Cell, 2012, 3, 123-131), it was found that the DPE enzyme of the present invention was altered from the amino acids near the key active site of the DPE enzyme in Clostridium cellulolyticum H, which directly resulted in a difference in performance between the two, such that the DPE enzyme activity of the present invention had an optimal pH of 7 and the highest enzyme activity under neutral conditions 2578U/mL was much higher than that of c.cellulolyticum H10; the stability of the DPE enzyme provided by the invention under the optimal temperature condition is far better than Clostridium cellulolyticum H, and the DPE enzyme provided by the invention is more suitable for industrial requirements.
The high-expression DPE enzyme discovered in the invention can be used for realizing the bioconversion production of D-psicose, and the enzyme catalytic reaction uses cheaper D-fructose as a substrate, so that the DPE enzyme has low cost and great advantages and industrial values.
It should be understood that while the present invention has been described by way of example in terms of its preferred embodiments, it is not limited to the above embodiments, but is capable of numerous modifications and variations by those skilled in the art. The fermentation process of the DPE enzyme can be adjusted and changed accordingly according to specific needs. It will thus be appreciated that those skilled in the art will be able to devise numerous alternative arrangements which, although not explicitly described herein, embody the principles of the invention and are included within its spirit and scope.
Claims (9)
1. The high-expression D-psicose-3-epimerase is characterized in that a nucleotide sequence for encoding the D-psicose-3-epimerase is shown as SEQ ID No.1 after codon optimization.
2. A recombinant vector or host bacterium for expressing the D-psicose-3-epimerase according to claim 1, wherein the recombinant vector or host bacterium is a recombinant vector or host bacterium comprising a nucleotide sequence encoding the D-psicose-3-epimerase, and the nucleotide sequence encoding the D-psicose-3-epimerase is shown in SEQ ID No.1.
3. The host bacterium of claim 2, wherein the host bacterium is bacillus subtilis.
4. The recombinant vector of claim 2, wherein the recombinant vector is pMA5.
5. A method for producing D-psicose-3-epimerase, wherein the method is characterized in that the D-psicose-3-epimerase is produced by fermentation using the host bacterium according to claim 2.
6. The method of claim 5, wherein the method comprises an inoculum size of 2% to 5% and the medium is formulated as follows: 20. 20 g/L casein hydrolysate, 15 g/L corn steep liquor extract, 1 g/L ammonium citrate, 40g/L glycerin, 2.31 g/L monopotassium phosphate, 0.2 g/L magnesium sulfate, 0.2 g/L calcium chloride, 20 mug/mL kanamycin final concentration and 20 mL trace element liquid.
7. The method of any one of claims 5-6, wherein the feed medium used in the method is formulated as follows: feed medium: glycerin 100 g/L, magnesium sulfate 7.89 g/L, casein hydrolysate 100 g/L, corn steep liquor extract 10g/L and trace element liquid 20 mL, wherein the feeding mode is as follows: 10 mL/h constant-speed feeding.
8. The method according to any one of claims 5 to 6, wherein the fermentation conditions in the method are temperature 37 ℃, rotation speed 400 rpm, ph=7.0, air flow 2.0 VVM for 48 hours.
9. Use of a D-psicose-3-epimerase as claimed in claim 1, a host bacterium as claimed in any one of claims 2 to 4 or a recombinant vector for the preparation of D-psicose.
Priority Applications (1)
Application Number | Priority Date | Filing Date | Title |
---|---|---|---|
CN202310154807.XA CN116286770B (en) | 2023-02-23 | 2023-02-23 | D-psicose-3-epimerase from clostridium and application thereof |
Applications Claiming Priority (1)
Application Number | Priority Date | Filing Date | Title |
---|---|---|---|
CN202310154807.XA CN116286770B (en) | 2023-02-23 | 2023-02-23 | D-psicose-3-epimerase from clostridium and application thereof |
Publications (2)
Publication Number | Publication Date |
---|---|
CN116286770A true CN116286770A (en) | 2023-06-23 |
CN116286770B CN116286770B (en) | 2023-10-17 |
Family
ID=86782682
Family Applications (1)
Application Number | Title | Priority Date | Filing Date |
---|---|---|---|
CN202310154807.XA Active CN116286770B (en) | 2023-02-23 | 2023-02-23 | D-psicose-3-epimerase from clostridium and application thereof |
Country Status (1)
Country | Link |
---|---|
CN (1) | CN116286770B (en) |
Citations (8)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
CN105802897A (en) * | 2016-05-26 | 2016-07-27 | 江南大学 | D-psicose-3-epimerase producing strain and application thereof |
CN107723307A (en) * | 2017-10-09 | 2018-02-23 | 中国科学院天津工业生物技术研究所 | A kind of method and its application for efficiently preparing the epimerase of D psicoses 3 |
CN110904088A (en) * | 2019-12-28 | 2020-03-24 | 浙江工业大学 | High-temperature-resistant D-psicose3-epimerase, mutant and application thereof |
CN111004795A (en) * | 2019-11-20 | 2020-04-14 | 大连工业大学 | Method for improving heterologous expression of D-psicose-3 epimerase |
CN112695006A (en) * | 2021-02-05 | 2021-04-23 | 江南大学 | Recombinant bacillus subtilis for expressing D-psicose-3-epimerase |
US20210261939A1 (en) * | 2017-11-15 | 2021-08-26 | Cj Cheiljedang Corporation | A Novel D-Psicose 3-Epimerase and Method for Producing D-Psicose Using the Same |
CN113801832A (en) * | 2020-06-12 | 2021-12-17 | 青岛蔚蓝生物股份有限公司 | Bacillus subtilis capable of producing psicose epimerase in high yield and application of bacillus subtilis |
CN115058408A (en) * | 2022-04-19 | 2022-09-16 | 黑龙江生物科技职业学院 | High-specific-activity acid-resistant D-psicose 3-epimerase from metagenome as well as encoding gene and application thereof |
-
2023
- 2023-02-23 CN CN202310154807.XA patent/CN116286770B/en active Active
Patent Citations (8)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
CN105802897A (en) * | 2016-05-26 | 2016-07-27 | 江南大学 | D-psicose-3-epimerase producing strain and application thereof |
CN107723307A (en) * | 2017-10-09 | 2018-02-23 | 中国科学院天津工业生物技术研究所 | A kind of method and its application for efficiently preparing the epimerase of D psicoses 3 |
US20210261939A1 (en) * | 2017-11-15 | 2021-08-26 | Cj Cheiljedang Corporation | A Novel D-Psicose 3-Epimerase and Method for Producing D-Psicose Using the Same |
CN111004795A (en) * | 2019-11-20 | 2020-04-14 | 大连工业大学 | Method for improving heterologous expression of D-psicose-3 epimerase |
CN110904088A (en) * | 2019-12-28 | 2020-03-24 | 浙江工业大学 | High-temperature-resistant D-psicose3-epimerase, mutant and application thereof |
CN113801832A (en) * | 2020-06-12 | 2021-12-17 | 青岛蔚蓝生物股份有限公司 | Bacillus subtilis capable of producing psicose epimerase in high yield and application of bacillus subtilis |
CN112695006A (en) * | 2021-02-05 | 2021-04-23 | 江南大学 | Recombinant bacillus subtilis for expressing D-psicose-3-epimerase |
CN115058408A (en) * | 2022-04-19 | 2022-09-16 | 黑龙江生物科技职业学院 | High-specific-activity acid-resistant D-psicose 3-epimerase from metagenome as well as encoding gene and application thereof |
Non-Patent Citations (3)
Title |
---|
LINGQIA SU等: "Highly efficient production of Clostridium cellulolyticum H10 D-psicose 3-epimerase in Bacillus subtilis and use of these cells to produce D-psicose", 《MICROB CELL FACT》, vol. 17, no. 1, pages 188 * |
WEI HONGBEI等: "Expression of d-psicose-3-epimerase from Clostridium bolteae and Dorea sp. and whole-cell production of d-psicose in Bacillus subtilis", 《ANNALS OF MICROBIOLOGY》, vol. 70, no. 1, pages 9 * |
胡梦莹等: "D-阿洛酮糖3-差向异构酶在枯草芽孢杆菌中的表达", 《食品与发酵工业》, vol. 48, no. 18, pages 42 - 47 * |
Also Published As
Publication number | Publication date |
---|---|
CN116286770B (en) | 2023-10-17 |
Similar Documents
Publication | Publication Date | Title |
---|---|---|
CN103468624B (en) | Genetic engineering bacteria used for high efficient production of mycose | |
CN102373230A (en) | Nucleotide sequence of Clostridium D-tagatose 3-epimerase and application thereof | |
CN112342232B (en) | Construction method of recombinant dextran sucrase escherichia coli suitable for diglycoside transfer function | |
CN114214251B (en) | Bacillus subtilis for producing D-psicose and culture method and application thereof | |
Jiang et al. | One-step bioprocess of inulin to product inulo-oligosaccharides using Bacillus subtilis secreting an extracellular endo-inulinase | |
CN104046586A (en) | Genetically engineered bacteria and application of genetically engineered bacteria to production of (2R, 3R)-2,3-butanediol | |
CN113249287A (en) | Bacillus subtilis engineering strain for expressing D-psicose 3-epimerase and application thereof | |
CN111206009B (en) | Genetic engineering bacterium for high yield of D-psicose and application thereof | |
CN116286770B (en) | D-psicose-3-epimerase from clostridium and application thereof | |
CN115948314B (en) | Bacillus licheniformis engineering strain for efficiently producing 2' -fucosyllactose | |
CN111455003A (en) | Method for preparing D-psicose from microalgae | |
CN116254249A (en) | Construction of recombinant bacterium for expressing chitinase and preparation of high-enzyme activity mutant | |
CN115838682A (en) | Bacillus licheniformis engineering strain for efficiently producing 2' -fucosyllactose by utilizing mannan | |
CN100374555C (en) | Method for preparing beta-cyclodextrin by yeast | |
CN106119235B (en) | A kind of DPE and its application from bulkholderia cepasea | |
CN116200318A (en) | Recombinant bacillus subtilis for exocrine expression of D-psicose 3-epimerase | |
CN115725484A (en) | Enzyme mutation expression engineering bacterium for synthesizing D-psicose and application thereof | |
CN114574460A (en) | Method for efficiently biosynthesizing rebaudioside M by utilizing glycosyltransferase UGT76G1 mutant | |
US11913053B2 (en) | Application of trehalase in fermentative production | |
CN109370973B (en) | Maltogenic amylase producing strain | |
CN113564092B (en) | Fusion enzyme for directionally synthesizing dextran, construction method and application thereof | |
CN111793663B (en) | Starch pullulanase with wide pH value adaptability and application thereof | |
CN116286712B (en) | Rhamnosyl transferase mutant, coding gene, preparation method and application | |
CN111500486B (en) | Strain capable of directly synthesizing butanol by using inulin as unique carbon source and application thereof | |
CN114015735B (en) | Method for synthesizing aspergillus niger disaccharide by cascading and catalyzing sucrose phosphorylase and glucose isomerase |
Legal Events
Date | Code | Title | Description |
---|---|---|---|
PB01 | Publication | ||
PB01 | Publication | ||
SE01 | Entry into force of request for substantive examination | ||
SE01 | Entry into force of request for substantive examination | ||
GR01 | Patent grant | ||
GR01 | Patent grant |