CN115927208A - Fungal virus, attenuated strain, plant disease control agent and application - Google Patents
Fungal virus, attenuated strain, plant disease control agent and application Download PDFInfo
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- CN115927208A CN115927208A CN202211008989.1A CN202211008989A CN115927208A CN 115927208 A CN115927208 A CN 115927208A CN 202211008989 A CN202211008989 A CN 202211008989A CN 115927208 A CN115927208 A CN 115927208A
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- Y02A—TECHNOLOGIES FOR ADAPTATION TO CLIMATE CHANGE
- Y02A50/00—TECHNOLOGIES FOR ADAPTATION TO CLIMATE CHANGE in human health protection, e.g. against extreme weather
- Y02A50/30—Against vector-borne diseases, e.g. mosquito-borne, fly-borne, tick-borne or waterborne diseases whose impact is exacerbated by climate change
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- Agricultural Chemicals And Associated Chemicals (AREA)
Abstract
The invention provides a fungal virus, an attenuated strain, a plant disease control agent and application, and relates to the technical field of biological control, wherein the plant disease control agent has the function of inhibiting plant disease fungi, and has 2 double-stranded RNAs with 1.6-1.8 kb, and the nucleotide sequences of the 2 double-stranded RNAs are shown as SEQ ID NO 1 and SEQ ID NO 2. The fungal virus provided by the invention can influence the growth, spore morphology and endocytosis of host hyphae and the sensitivity of a host to medicaments such as carbendazim, prochloraz and azoxystrobin, so that the aim of efficiently preventing and treating plant diseases is fulfilled.
Description
Technical Field
The invention relates to the technical field of biological control, and particularly relates to a fungal virus, an attenuated strain, a plant disease control agent and application thereof.
Background
Among plant diseases, fungi are one of the most important pathogens, about 80% of the plant diseases are caused by fungi, huge economic losses are caused to agricultural production every year, the prevention and the treatment of the fungal diseases are mainly dependent on chemical agents at present, the continuous application of chemical pesticides is easy to cause the emergence of drug-resistant strains, the drug effect is reduced, the cost is increased, the environment is polluted, and the human health is harmed, so that the search for an efficient and safe prevention and treatment means has important significance for the prevention and the treatment of the fungal diseases.
Fungal viruses (Fungal viruses or mycoviruses) are a class of viruses that infect fungi and are found in a wide variety of fungi including phytopathogenic fungi. Most of the fungal viruses are asymptomatic mixed infection in a host, and some of the fungal viruses with weak toxicity (hypoviruses) can generally cause growth defects, pigment synthesis reduction, spore production reduction, pathogenicity decline and the like of the host, can be used as potential biocontrol factors in biological control of plant fungal diseases, and is used for controlling the plant fungal diseases. Therefore, the excavation of low-toxicity mycovirus with biocontrol potential has great significance for utilizing the mycovirus to carry out plant fungal diseases.
Colletotrichum spp is a very important group of plant pathogenic fungi, which cause diseases of various woody and herbaceous plants. The pathogenic bacteria of the genus can infect plants of up to 30 genera, and cause important loss to fruits with high yield and high economic value, such as mango, strawberry, orange, avocado, banana and the like; the harm to corn, sorghum and other grains and sugarcane is serious, the economic loss caused by the pathogenic fungi is serious, the destructive effect is strong, and the pathogenic fungi are selected as the eighth important plant pathogenic fungi in the world based on the scientific and economic values. At present, the disease is mainly controlled by a chemical method, but a series of related problems such as ecological balance destruction, environmental pollution, pathogenic bacteria resistance and the like caused by long-term use of chemical agents are more and more serious.
Disclosure of Invention
In order to solve the technical problem of the colletotrichum aiming at the diseases caused by woody plants and herbaceous plants, the invention provides the following scheme:
the fungal virus has the function of inhibiting plant disease fungi, and has 2 double-stranded RNAs with the length of 1.6-1.8 kb, and the nucleotide sequences of the 2 double-stranded RNAs are shown as SEQ ID NO. 1 and 2.
Nucleic acid having at least the sequences in SEQ ID NO 1 and 2 or the sequence of a specific part of the sequences having a defined function.
The attenuated strain contains the fungal virus, is classified and named as exotic anthrax (Colletotrichum alienum) YC-31, and has a preservation number of CCTCCM 20221146.
A plant disease control agent comprising at least said fungal virus and/or said attenuated strain.
According to the application of the fungal virus or attenuated strain in inhibiting the pathogenicity of plant pathogenic fungi, the plant pathogenic fungi refer to: colletotrichum pathogenic fungi.
According to the application of the fungal virus in extracellular infection of plant pathogenic fungi, the plant pathogenic fungi refer to: colletotrichum pathogenic fungi.
According to the application of the fungal virus or the attenuated strain in preparing the plant disease control agent caused by the plant pathogenic fungi, the plant pathogenic fungi refer to: colletotrichum pathogenic fungi.
A method for attenuating phytopathogenic fungi by infecting the phytopathogenic fungi in vitro with said fungal virus.
A method for controlling a plant pathogenic fungus, which comprises adding the plant disease controlling agent to a plant.
The invention provides a fungal virus and an attenuated strain with the fungal virus, wherein the fungal virus has low toxicity, and the attenuated strain can inhibit the pathogenicity of plant pathogenic fungi, particularly because the attenuated strain contains the fungal virus, the fungal virus can influence the growth of host hypha, the spore morphology, the endocytosis and the sensitivity of a host to medicaments such as carbendazim, prochloraz and azoxystrobin.
In addition, the fungal virus can be trans-propagated to pathogenic fungi such as fruit anthrax (C.fructicola), ash tree anthrax (C.spaetherianum) and colletotrichum gloeosporioides (C.gloeosporioides) through virus particle transfection, so as to reduce the pathogenicity of the pathogenic fungi.
The attenuated strain is a camellia oleifera fruit which is separated from a permanently defined area in Zhang Jiajiu city in Hunan province, and the attenuated strain is named as alien anthrax bacteria YC-31 (Colletotrichum alienum) according to classification after separation and identification, and is deposited in the China center for type culture collection at 21.07.2022, with the address: the preservation number of the Wuhan university in Wuhan, china is CCTCC NO: M20221146.
Further research shows that the attenuated strain YC-31 contains 2 naturally-occurring mycoviruses with double-stranded RNA of 1.6-1.8 kb, the whole genome sequence of the mycoviruses is obtained by a high-throughput sequencing technology and a ligase-mediated terminal cloning method, the genome sequence is named as Colletotrichum alisimum partivivus 1, called CaPV1 for short, and the gene of the mycoviruses CaPV1 has the nucleotide sequence shown as SEQ ID NO: 1-2 genomic sequences. The fungal virus CaPV1 contains conserved motifs of RdRp (RNA-dependent RNA polymerase) and CP (capsid protein) in the sequence of double-stranded RNA, and the nucleotide sequence encoding RdRp has homology with the known Metarhizium brunneum partitivrus 2, and the nucleotide sequence of CP has homology with the known Colletotrichum partitivrus 1. Therefore, the fungal virus CaPV1 is presumed to be a novel fungal virus based on genome structure analysis, sequence homology comparison and phylogenetic analysis.
The attenuated strain YC-31 is detoxified by a protoplast regeneration technology to obtain the detoxified strains YC-31-P23 and YC-31-P29 of the attenuated strain YC-31, and the pathogenic force of the detoxified germs is recovered through research. The fungal virus CaPV1 provided by the invention can be transmitted to a detoxified strain YC-31-P23 through virus particle transfection, and then an attenuated strain YC-31-P23-T1 is obtained, and the pathogenicity of the obtained attenuated strain is obviously weakened. Therefore, it was concluded that the fungal virus CaPV1 reduces the virulence of the host.
According to observation, the attenuated strain YC-31 provided by the invention has sparse hypha and less branches, while the attenuated strain YC-31-P23 has dense hypha and more branches, so that the fungus attenuated CaPV1 is presumed to influence the growth of host hypha. In addition, in the spore morphology, conidia of the attenuated strain YC-31 are cylindrical, elliptical or long-line shaped, the two ends are blunt or one end is slightly sharp, and abnormal long-line type conidia appear, and the size is 10.1-26.7 × 3.9-8.9 μm (av =15.92+0.65 × 5.81+0.15, n = 50). And the conidiospore of the detoxified strain YC-31-P23 is cylindrical and oval, the two ends are blunt and round or one end is slightly pointed, the size of the conidiospore is 7.5-15.2X 3.5-6.4 mu m (av =12.04+ 0.28X 4.83+0.08, n = 50), so that the influence of the fungal virus CaPV1 on the host conidiospore morphology can be obtained.
The hyphae of the virulent strain YC-31 and the detoxified strain YC-31-P23 are stained by FM4-64 dye, and the endocytosis of the hyphae is observed by a fluorescence microscope. The results show that the dye is absorbed very rapidly in the attenuated strain YC-31-P23, whereas in the attenuated strain YC-31 provided by the invention, the dye is prevented from entering the hyphae obviously, and a small amount of dye is not absorbed by the hyphae until 30min. Thus, it was demonstrated that the fungal virus CaPV1 was able to influence the endocytosis of the host.
The attenuated strain YC-31 and the detoxified strain YC-31-P23 provided by the invention are subjected to medicament sensitivity determination by using carbendazim, prochloraz and azoxystrobin. The sensitivity of the attenuated strain YC-31 provided by the invention to carbendazim and prochloraz is higher than that of the detoxified strain YC-31-P23, and the sensitivity to azoxystrobin is lower than that of the detoxified strain YC-31-P23. It is therefore speculated that the fungal virus CaPV1 influences the host's sensitivity to the agent, resulting in an increased sensitivity to carbendazim and prochloraz and a decreased sensitivity to azoxystrobin.
The fungal virus CaPV1 provided by the invention is trans-propagated to a fruit anthrax (C.fructicola) Cf10-6 strain and a LY5-1 strain, a Fraxinus chinensis (C.spaothenianum) Cs4-1 strain and a Colletotrichum gloeosporioides Cg2-1 strain through virion transfection, and the obtained virus strain also shows obvious reduction of pathogenicity. Therefore, the fungal virus CaPV1 can infect host bacteria through particle transfection, so that the host bacteria contain the fungal virus to reduce the pathogenicity of plant pathogenic fungi and achieve the aim of biologically preventing and treating plant fungal diseases.
The fungal virus provided by the invention can influence the growth, spore morphology and endocytosis of host hyphae and the sensitivity of a host to medicaments such as carbendazim, prochloraz and azoxystrobin, so that the aim of efficiently preventing and treating plant diseases is fulfilled.
Drawings
In order to more clearly illustrate the technical solution of the present invention, the drawings required for the use in the present invention will be briefly described below, it should be understood that the following drawings only show some embodiments of the present invention and therefore should not be considered as limiting the scope, and that for those skilled in the art, other related drawings can be obtained from these drawings without inventive effort.
FIG. 1 is a colony map of attenuated strain YC-31 provided by the present invention;
FIG. 2 is an electrophoretogram of double-stranded RNA in attenuated strain YC-31 provided by the present invention, wherein: m is 5000bp Marker;
FIG. 3 is a schematic structural diagram of the genome of a fungal virus CaPV1 provided by the present invention;
FIG. 4 is a phylogenetic tree constructed by the sequence of the fungal virus CaPV1 RdRp provided by the present invention;
FIG. 5 shows virus particles of the extracted mycovirus CaPV1 from the attenuated strain YC-31 provided by the present invention, wherein: a: protein electrophoresis pattern of virus particles of fungal virus CaPV1, B: electron micrograph of virus particles of fungal virus CaPV1, C: a dsRNA electrophoresis picture after the extraction of the virus particle nucleic acid of the fungal virus CaPV 1;
FIG. 6 is a colony map of the attenuated strain YC-31, the detoxified strains YC-31-P23 and YC-31-P29, and the detoxified recaptured strain YC-31-P23-T1 provided by the present invention on PDA medium;
FIG. 7 is a result chart of the inoculation of pear, camellia sinensis leaves and apple with the strains YC-31, YC-31-P23 and YC-31-P29 of the invention, and the detoxified and detoxified strains YC-31-P23-T1 respectively;
FIG. 8 is a map showing hyphal tips and spore morphology of attenuated strain YC-31 and attenuated strain YC-31-P23 according to the present invention;
FIG. 9 is a photograph of the attenuated strain YC-31 and the attenuated strain YC-31-P23 of the present invention, which were observed under a fluorescence confocal microscope after the hyphae were stained with a plasma membrane FM4-64 dye;
FIG. 10 shows the sensitivity of attenuated strain YC-31 and detoxified strain YC-31-P23 to carbendazim, prochloraz and azoxystrobin;
FIG. 11 shows the study on the control of plant pathogenic fungi by the fungal virus CaPV1 of the present invention, wherein: cf10-6-V, LY5-1-V, cs4-1-V, and Cg2-1-V represent strains infected with the virus.
Detailed Description
The technical solution of the present invention will be described below with reference to the accompanying drawings.
< fungal viruses according to the present invention >
The fungal virus provided by the invention is a fungal virus which is extracted from an attenuated strain YC-31 and has the capability of inhibiting the pathogenicity of plant pathogenic fungi, is named as Colletrichum alienum partitivrus 1 (called CaPV1 for short), and has 2 double-stranded RNAs with 1.6-1.8 kb. Each virus particle of the fungal virus has 2 double-stranded RNAs (double-stranded RNAs) of 1.6-1.8 kb, the 2 double-stranded RNAs are wrapped in one virus particle, and colonies of an attenuated strain YC-31 exist and pass at the same time, and are shown in figure 1.
The fungal virus contains a conserved motif of RdRp (RNA-dependent RNA polymerase) in the sequence of double-stranded RNA, and the nucleotide sequence of the RNA encoding this region is highly homologous to Metharhizium brunneum partiivus 2 (McPV 2) virus and to the region encoding RdRp in the genome of a virus of the genus of the family Bisoviridae. The fungal virus contains a conserved motif of CP (capsid protein) in the sequence of double-stranded RNA, and the nucleotide sequence of RNA encoding the region is highly homologous with Colletrichum partiticurus 1 (CPV 1) virus and has homology with the region encoding CP in the genome of a virus of the genus of the family Bisoviridae.
The invention carries out sequence determination on the fungal virus CaPV1 to obtain a full-length nucleotide sequence. Thus, the present invention encompasses all of the fungal viral genes, nucleic acids having the nucleotide sequences or a portion thereof, proteins encoded by the nucleotide sequences, and the like.
Nucleotide sequences of 2 double-stranded RNAs of the virus are represented by SEQ ID NO:1 to 2. The present invention also encompasses nucleic acids all having all or a part of the above nucleotide sequences. The nucleic acid may be double-stranded or single-stranded, and DNA, cDNA, RNA, and the like are all included. For example, SEQ ID NO:1 to 2, a specific partial sequence having a predetermined function in the sequence, a cDNA having a nucleotide sequence equivalent to these sequences, a recombinant vector (such as a plasmid or a virus) into which a nucleotide sequence equivalent to these sequences has been inserted, and the like are included in the present invention.
The results of the sequence analysis showed that the sequence shown in SEQ ID NO:1, a conserved motif of RdRp (RNA-dependent RNA polymerase), SEQ ID NO:2, there is a conserved motif of CP (capsid protein). Therefore, for example, nucleic acids or recombinant vectors having at least these sequence portions as specific portions having predetermined functions can be prepared and used according to the purpose or use.
The nucleic acid (or gene) of the present invention also includes nucleic acids having homology with the above-mentioned nucleotide sequences, for example, nucleic acids which hybridize under stringent conditions with nucleic acids consisting of nucleotide sequences complementary to the nucleotide sequences and have a fungal pathogenicity-inhibiting effect.
As the host, a known host such as Escherichia coli, yeast, cultured cell, etc. can be used. Considering that fungal viruses infect fungi, yeasts are most suitable as hosts, for example, because they have high proliferation properties and are relatively easy to use. As the recombinant vector, a known vector can be used. Inserted with SEQ ID NO:1 or 2, and co-expressing the two types of genes to reconstitute a fungal virus. In this case, although it is possible to use a known host and a known recombinant vector, yeast may be most suitable from the viewpoint of allowing simultaneous introduction of a plurality of vectors.
< preparation of plant pathogenic fungus Virus >
Since the fungal virus CaPV1 of the present invention is present in a predetermined foreign anthrax YC-31 strain, the fungal virus can be obtained by separating and recovering the virus from the foreign anthrax YC-31 strain infected with the fungal virus CaPV 1.
As a method for separating and recovering a virus, a known method can be used. For example, the cells may be frozen with liquid nitrogen or the like, disrupted, suspended in a predetermined buffer solution, and then virus may be isolated by ultracentrifugation or the like, whereby the virus can be recovered.
However, the fungal virus CaPV1 of the present invention is not limited to only viruses obtained by such production methods. That is, for example, a virus obtained by separating and recovering the anthrax bacteria including the fungal virus CaPV1 is also included in the present invention in a broad sense.
< methods for attenuating phytopathogenic fungi >
The fungal virus CaPV1 of the present invention can be used to infect a specific plant pathogenic fungus or the like, thereby attenuating the fungus.
< Agents for controlling plant diseases >
The plant disease controlling agent of the present invention comprises at least either one of the fungal virus CaPV1 provided by the present invention or the attenuated strain YC-31 provided by the present invention, or may comprise both the fungal virus CaPV1 and the attenuated strain YC-31, or may comprise other components.
The other components include, for example, a predetermined carrier, a binder, a thickener, a fixing agent, an antiseptic and antifungal agent, a solvent, a stabilizer, an antioxidant, an ultraviolet absorber, a crystal precipitation inhibitor, a defoaming agent, a physical property improving agent, a coloring agent, and the like. In addition, other pesticidal ingredients such as acaricides, nematicides, bactericides, antivirals, attractants, herbicides, plant growth regulators, synergists and the like may also be contained.
As the carrier, for example, a solid carrier and/or a liquid carrier can be used. Examples of the solid carrier include animal and plant powders such as starch, activated carbon, soybean powder, wheat flour, wood powder, fish powder and milk powder, and mineral powders such as talc, kaolin, bentonite, zeolite, diatomaceous earth, white carbon, clay, alumina, calcium carbonate, potassium chloride and ammonium sulfate. Examples of the liquid carrier include alcohols such as water, isopropyl alcohol and ethylene glycol, ketones such as cyclohexanone and methyl ethyl ketone, ethers such as propylene glycol monomethyl ether and diethylene glycol mono-N-butyl ether, aliphatic hydrocarbons such as kerosene and light oil, aromatic hydrocarbons such as xylene, trimethylbenzene, tetramethylbenzene, methylnaphthalene and solvent naphtha, amides such as N-methyl-2-pyrrolidone, glycerides of fatty acids, and vegetable oils such as soybean oil and rapeseed oil.
Examples of the binder, thickener, and fixing agent include starch, dextrin, cellulose, methyl cellulose, ethyl cellulose, carboxymethyl cellulose, hydroxyethyl cellulose, hydroxypropyl methyl cellulose, hydroxymethyl starch, pluronic, pullulan, sodium alginate, ammonium alginate, propylene glycol alginate, guar gum, locust bean gum, gum arabic, xanthan gum, gelatin, casein, polyvinyl alcohol, polyethylene oxide, polyethylene glycol, ethylene-propylene block polymer, sodium polyacrylate, and polyvinyl pyrrolidone.
The formulation of the control agent is not particularly limited, and may be in the form of, for example, an emulsion, a suspension, a powder, a granule, a tablet, a hydrate, an aqueous solvent, a liquid, a suspension, a granule hydrate, an aerosol, a paste, an oil, an emulsion, or the like.
Examples of the method of applying the controlling agent to the plant include a method of applying the controlling agent to the surface or back surface of the leaf, a method of attaching the controlling agent to the surface or back surface of the leaf using a predetermined carrier or the like, and a method of scattering or supplying the controlling agent to the leaf.
The amount of the control agent to be applied or applied to the surface of the plant is appropriately selected depending on various conditions such as the concentration of the active ingredient, the form of the preparation, the type of the target disease or crop, the degree of damage caused by the disease, the site of application, the method of application, the time of application, the mixing, and the amount and type of the chemical agent or fertilizer to be used.
Example 1:
isolation of attenuated Strain YC-31
Separating the tissues of the boundary of a disease key by adopting a conventional tissue separation method from the field oil tea fruits in the eternal region of Zhang Jiajie city in Hunan province, sterilizing for 1min by 70% alcohol, sterilizing for 1min by mercuric chloride, rinsing with sterile water for three times, then soaking the surface water by using sterilized filter paper, transferring the filter paper to a PDA plate by using sterilized tweezers, and carrying out inverted culture at 28 ℃. The grown colonies were transferred to a new PDA medium, purified by single spore isolation and stored on PDA slants at 4 ℃ for further use.
Example 2:
extracting and purifying double-stranded RNA of attenuated strain YC-31
The attenuated strain YC-31 of the invention is cultured for 1 week in liquid, and then filtered to collect mycelium; grinding mycelium 0.1g into powder in liquid nitrogen, transferring into centrifuge tube, adding 700 μ L STE (1M Tris-HCl, 0.5M EDTA, 5M NaCl, 10% SDS), and shaking with vortex-shaking device for 3min to mix thoroughly; adding 700 μ L RNA extraction phenol, shaking for 3min, and centrifuging at 4 deg.C and 12000rpm for 3min; taking about 650 mu L of supernatant, adding a mixture of equal volume of RNA extraction phenol, chloroform and isoamyl alcohol with the volume ratio of 25; collecting supernatant of about 500 μ L, combining two tubes into 1 tube, adding 0.1g cellulose powder and 200 μ L anhydrous ethanol, shaking for 5min, and standing on ice for 10min. Continuing to oscillate for 3min, and oscillating for 3min at 12000rpm at 4 ℃; discarding supernatant, adding 1020 μ L TE buffer (1M Tris-HCl, 0.5M EDTA, 5M NaCl PH7.0) and 180 μ L anhydrous ethanol, shaking for 1min, and centrifuging at 4 deg.C 12000rpm for 3min; removing supernatant, adding 420 μ L TE, shaking for 3min, and centrifuging at 4 deg.C and 12000rpm for 3min; taking about 400 mu L of supernatant, putting into a 1.5mL new centrifuge tube, adding equal volume of isopropanol, precipitating at-20 ℃ for 2h, centrifuging at 12000rpm at 4 ℃ for 15min, and removing the supernatant; adding 1mL of 70% ethanol, centrifuging at 12000rpm for 10min, discarding the supernatant, washing once again, completely removing the residual ethanol, and adding 30 mu Ldd H2O to dissolve the precipitate; mu.L of DNaseI (RNase-free), 1. Mu.L of S1 Nuclear and 1/5 volume of DNA buffer were added thereto, and the mixture was reacted at 37 ℃ for 40 minutes to obtain the objective double-stranded RNA.
Example 3:
sequencing the whole genome of the attenuated strain YC-31 double-stranded RNA
And adding a 5' phosphorylated and 3' aminated adaptor Primer A to the 3' end of the double-stranded RNA, and purifying and recovering the double-stranded RNA after the end of the adaptor is filled. Then, cDNA was synthesized by reverse transcription using a random Primer and a Primer B Primer (reverse complement Primer of Primer A). cDNA was synthesized as a template and then sequencing of the clone of the terminal sequence was performed. And designing gene specific primers and Primer B primers by using fragments obtained by high-throughput sequencing to perform PCR, purifying and recovering the obtained strips, connecting the strips to a T vector, and converting escherichia coli for screening to obtain positive clones. Each positive clone was then sequenced. Obtaining the full-length sequence of the genome information of the fungal virus CaPV 1. The fungal virus CaPV1 is composed of 2 double-stranded RNAs (see figure 3), and the nucleotide sequence of each double-stranded RNA is shown in SEQ ID NO:1 to 2. In the sequence listing, "uracil" is replaced with "thymine" in order to perform sequence determination after replacing double-stranded RNA with cDNA.
The evolutionary tree constructed from the RdRp sequence of the fungal virus CaPV1 is shown in FIG. 4.
Example 4:
analysis of the Biochemical characteristics of the viral particles of the fungal Virus CaPV1
Taking a plurality of bottles of attenuated strain YC-31 which is subjected to amplification culture in PDA, filtering, drying by using sterile filter paper, and grinding into powder in liquid nitrogen; adding 0.1M phosphate buffer (pH7.0) into the mycelium at a ratio of 1g mycelium dry powder to 4mL phosphate buffer, shaking for 5min, and centrifuging at 4 deg.C and 10000rpm for 15min; the supernatant was aspirated, 10% by volume of n-butanol was added: chloroform (1); the supernatant was aspirated, 50% PEG6000 and 5M NaCl were added to give final concentrations of 6% and 0.1M, respectively, and the mixture was left to stand at 4 ℃ for overnight precipitation. Centrifugation was carried out at 12000rpm at 4 ℃ for 30min, the supernatant was discarded, and the pellet was suspended in 0.01M phosphate buffer (about 30ml, which was sufficient to dissolve the virus particles in the phosphate buffer), and centrifuged at 12000rpm at 4 ℃ for 30min, leaving the supernatant (about 30 ml). Then, the supernatant was put into an ultra-high speed centrifuge tube, 20% sucrose was added to the bottom, 100000g was centrifuged for 4 hours, and the obtained precipitate was dissolved in a small amount of 0.01M phosphate buffer (pH 7.0), which was a crude extract of virions.
A part of the crude extract of the virus particles was subjected to SDS-PAGE (8% gel, tris-glycine buffer (pH 8.8), 20mA, 90 minutes) electrophoresis, and stained with CBB (Coomassie Brilliant blue) to analyze the molecular weight of the major component (coat protein) of the virus protein. The results of protein electrophoresis are shown in FIG. 5, and a band of about 40kDa protein derived from viral particles is detected. From the fraction in which the 40kDa protein was detected, nucleic acid extraction was performed by the SDS-phenol method, and as a result, 2 double-stranded RNAs of 1.6 to 1.8kbp were detected (see FIG. 5). Therefore, the presence of the viral particles of the fungal virus of the present invention can be confirmed by this example.
Example 5:
identification of the presence of virus particles outside the cell by electron microscopy
This strain YC-31 was cultured in PDA medium, and virus particles were isolated from the culture supernatant. The culture supernatant was centrifuged (10000 g, 5 min) and then ultracentrifuged (100000 g, 30 min) to obtain a precipitate containing virus particles. This precipitate was dissolved in 0.05M phosphate buffer (pH 7.0, negatively stained with phosphotungstic acid or uranium acetate, and observed with an electron microscope (magnification:. Times.20000 to 40000). As a result, the virus particle of the fungal virus CaPV1 of the present invention was identified by the electron microscope, and the virus particle was in a hexagonal shape of about 30 to 40nm and enclosed in an envelope-like structure (see B in FIG. 5). Therefore, it was confirmed by this example that the virus particle of the fungal virus of the present invention was present in the liquid medium of the strain containing the fungal virus CaPV 1.
Example 6:
the attenuated strain YC-31 is subjected to protoplast elimination to obtain the attenuated strains YC-31-P23 and YC-31-P29.
Activating the attenuated strain YC-31 provided by the invention on a PDA flat plate, picking up agar blocks containing hyphae to transfer to a PD culture medium after young hyphae grow out, and continuously culturing for 12-24 h at 28 ℃ and 180 rpm; filtering and collecting hyphae by using gauze, washing the hyphae for 2-3 times by using sterile deionized water, continuously washing the hyphae for 2-3 times by using 0.7M NaCl, selecting a proper amount of hyphae to 5mL of protoplast preparation solution, placing the solution in 30 ℃, shaking and culturing for 1-3 h at 80rpm, and performing microscopic examination until the protoplasts are released in large quantity. Filtering with three layers of lens wiping paper to collect protoplast, centrifuging at 4 deg.C for 8min at 6000g, and collecting protoplast. Adding an appropriate amount of STC solution to suspend the protoplast, centrifuging for 8min at 4 ℃, adding a small amount of STC to re-suspend the protoplast, and observing the enrichment condition of the protoplast by microscopic examination. Protoplast suspensions were diluted with STC in different gradients and plated onto regeneration medium plates. After 1-2 days, the grown fresh single colony is picked up and cultured on a PDA plate, and verified by dsRNA extraction and RT-PCR.
Example 7:
PEG-mediated protoplast transformation is carried out on virus particles of a fungal virus CaPV1, and the protoplast transformation is successfully introduced into a detoxified strain YC-31-P23 to obtain a detoxified and recovered strain YC-31-P23-T1.
After extracting the viral particles of CaPV1 by example 4, protoplasts in the detoxified strain YC-31-P23 were prepared as in example 6, 10. Mu.L of the viral particle extract was added to 100. Mu.L of the protoplast suspension, incubated on ice for 30min, added with 1mL of PTC, and left to stand at room temperature for 30min. Dripping the mixed solution into regeneration culture medium, picking mycelium block to PDA plate after mycelium grows over the plate, culturing for 2-3d, performing dsRNA extraction and RT-PCR verification, and making corresponding colony map as shown in FIG. 6.
Example 8:
the needling inoculation method is used for researching whether the fungal virus CaPV1 is effective in preventing and controlling plant pathogenic fungi.
Sterilizing pear, mountain tea tree leaf and apple with 75% ethanol, and air drying; forming wounds on the surfaces of pears, mountain tea leaves and apples by using sterilized pins; beating 5mm fungus cakes on the edges of a fresh attenuated strain YC-31, a detoxified strain YC-31-P23 and a detoxified strain YC-31-P29 and a detoxified and obtained strain YC-31-P23-T1 PDA plate of the invention cultured for 5 days to be inoculated on pears, mountain tea leaves and apples; placing the inoculum in a clean transparent polystyrene box, moistening with cotton wetted with sterile water, culturing at constant temperature of 28 deg.C, repeating the treatment for three times, and inoculating for 14d to count the morbidity.
The results are shown in FIG. 7, which shows that the lesion spots formed by the strain YC-31 and the detoxified and detoxified strain YC-31-P23-T1 of the invention are smaller than the lesion spots formed by the detoxified strains YC-31-P23 and YC-31-P29. It is demonstrated that the fungal virus CaPV1 of the present invention is effective in the control of phytopathogenic fungi.
Example 9:
the hyphal tips and spore morphology of the attenuated strain YC-31 and the attenuated strain YC-31-P23 of the present invention were observed by electron microscopy.
Fresh mycelia of the attenuated strain YC-31 and the attenuated strain YC-31-P23 were inoculated into the center of PDA medium by punching with a punch having a diameter of 5 mm. Sterile cover slips were inserted at an angle of 45 ° to approximately 3cm from the hyphal mass, incubated in a constant temperature incubator at 28 ℃ and repeated three times for each treatment. When the hyphae grow on the cover glass, the cover glass is picked and covered on the glass slide, and the hyphae tip shape is observed and recorded by an optical microscope.
Selecting fresh attenuated strain YC-31 and detoxified strain YC-31-P23, placing fresh hypha blocks in 100mL PD culture medium, shaking at 28 deg.C and 180rpm, filtering to remove hypha, placing 10 μ L spore liquid on glass slide, observing spore morphology with optical microscope, and recording.
The attenuated strain YC-31 was found to have sparse hyphae and less branching (see first panel of FIG. 8), whereas the attenuated strain YC-31-P23 had dense hyphae and more branching (see second panel of FIG. 8), and thus the fungal virus CaPV1 was presumed to affect host hyphal growth. The strain of the attenuated strain YC-31 has abnormal long-line conidia, the conidia are cylindrical, elliptical or long-line, both ends are blunt round or one end is slightly sharp (see the third picture of figure 8), and the size is 10.1-26.7X 3.9-8.9 μm (av = 15.92)+0.65×5.81+0.15,n = 50), whereas the conidia of the detoxified strain YC-31-P23 were cylindrical, oval, blunt-rounded at both ends or slightly pointed at one end, and had a spore size of 7.5-15.2 × 3.5-6.4 μm (av = 12.04)+0.28×4.83+0.08,n = 50), and thus CaPV1 affected host conidiospore morphology (see fig. 8, fourth panel).
Example 10:
the hyphae of the virulent strain YC-31 and the detoxified strain YC-31-P23 are stained by FM4-64 dye, and the endocytosis of the hyphae is observed by a fluorescence microscope.
Mycelia cultured in MM liquid medium for 48h with shaking were collected and placed on a slide glass, and the mycelia were stained with lipid-compatible FM4-64 dye by dropping on the mycelia for various lengths of time. After dyeing, immediately washing with clear water for 3 times to elute redundant dyes, and placing under a fluorescence microscope to observe the dye absorption condition of the mycelium.
The results are shown in FIG. 9, which shows that the dye is absorbed very rapidly in the detoxified strain YC-31-P23, whereas in the attenuated strain YC-31 of the present invention the entry of the dye into the hyphae is significantly hindered, and only a small amount of the dye is absorbed by the hyphae up to 30min. Thus, the fungal virus CaPV1 influences the endocytosis of the host.
Example 11:
the sensitivity of the attenuated strain YC-31 and the detoxified strain YC-31-P23 of the invention to carbendazim, prochloraz and azoxystrobin is tested.
By adopting a hypha growth rate method, 97.17 percent of carbendazim is configured into PDA culture medium plates of 0.01, 0.02, 0.04, 0.08 and 0.16mg/L, 97 percent of prochloraz is configured into PDA culture medium plates of 0.0125, 0.025, 0.05, 0.1 and 0.2mg/L, and 98 percent of azoxystrobin is configured into PDA culture medium plates of 2, 4, 8, 16 and 32 mg/L. PDA medium without added bactericide was inoculated as a blank. Repeating each concentration for 3 times, and adding bactericide with different concentrations into PDA culture medium at 50 deg.C to obtain culture medium containing medicine with different final concentrations and making into PDA plate. The bacterial cake was punched out from the edge of newly cultured 5d colony by a 5mm diameter punch and inoculated in the center of the drug-containing and control PDA plates of different drugs and concentrations. After inoculation, the inoculated strain is placed in a constant temperature incubator at 28 ℃ for 5d, the diameter of each treated colony is measured by a cross method, and the hypha growth inhibition rate is calculated. Recording data and analyzing by SPSS20.0 software, preparing toxicity curve by using inhibition rate as y axis and logarithm value of concentration as x axis, and calculating toxicity regression equation, correlation coefficient (r) and lethal middle concentration (EC) 50 )。
The results are shown in FIG. 10, and the attenuated strain YC-31 of the present invention was used for carbendazim EC 50 0.037mg/L, and the detoxified strain YC-31-P23 vs carbendazim EC 50 0.068mg/L; the attenuated strain YC-31 of the invention is to prochloraz EC 50 0.031mg/L, and the detoxified strain YC-31-P23 vs. carbendazim EC 50 Is 0.121mg/L; attenuated bacteria of the present inventionStrain YC-31 p-azoxystrobin EC 50 25.990mg/L, and the detoxified strain YC-31-P23 azoxystrobin EC 50 It was 16.929mg/L. This indicates that the attenuated strain YC-31 of the present invention has a higher sensitivity to carbendazim and prochloraz than the detoxified strain YC-31-P23, and a lower sensitivity to azoxystrobin than the detoxified strain YC-31-P23. It is therefore speculated that CaPV1 affects host sensitivity to the agent, resulting in increased sensitivity to carbendazim and prochloraz, and decreased sensitivity to azoxystrobin.
Example 12:
research on prevention and treatment of plant pathogenic fungi by using CaPV1 virus
After extraction of virions of the fungal virus CaPV1 by example 4, the virions were introduced by PEG-mediated protoplast transformation into other non-toxic wild-type anthracnose bacteria Cf10-6 and LY5-1 (C.fructicola), cs4-1 (C.spaeatianum) and Cg2-1 (C.gloeosporioides). Cf10-6-V, LY5-1-V, cs4-1-V, and Cg2-1-V represent strains infected with the virus. Therefore, the fungal virus CaPV1 can infect host bacteria through particle transfection, so that the host bacteria contain the fungal virus, thereby reducing the pathogenicity of plant pathogenic fungi and achieving the aim of biologically controlling plant fungal diseases, as shown in figure 11.
The above description is only for the specific embodiments of the present invention, but the scope of the present invention is not limited thereto, and any person skilled in the art can easily conceive of the changes or substitutions within the technical scope of the present invention, and all the changes or substitutions should be covered within the scope of the present invention. Therefore, the protection scope of the present invention shall be subject to the protection scope of the claims.
Claims (10)
1. The fungal virus has the function of inhibiting plant disease fungi, and has 2 double-stranded RNAs with the length of 1.6-1.8 kb, and the nucleotide sequences of the 2 double-stranded RNAs are shown as SEQ ID NO. 1 and 2.
2. The fungal virus of claim 1, which is capable of inhibiting plant disease fungi on woody and herbaceous plants.
3. Nucleic acid having at least the sequences in SEQ ID NO 1 and 2 or the sequence of a specific part of the sequences having a defined function.
4. An attenuated strain comprising the fungal virus of claim 1, which is classified and designated as alien anthrax (Colletotrichum alienum) YC-31, with a collection number of CCTCCM 20221146.
5. A plant disease control agent comprising at least the fungal virus of claim 1 and/or the attenuated strain of claim 4.
6. Use of a fungal virus according to claim 1 or an attenuated strain according to claim 4 for inhibiting the virulence of a phytopathogenic fungus.
7. Use of a fungal virus according to claim 1 for the extracellular infection of a plant pathogenic fungus.
8. Use of the fungal virus according to claim 1 or the attenuated strain according to claim 4 for the preparation of an agent for controlling a plant disease caused by a plant pathogenic fungus.
9. A method for attenuating a plant pathogenic fungus by infecting the plant pathogenic fungus in vitro with the fungal virus of claim 1.
10. A method for controlling phytopathogenic fungi, which comprises adding the plant disease-controlling agent according to claim 5 to plants.
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