CN114989266B - African swine fever virus pA104R protein immunosuppression related amino acid site and application thereof - Google Patents
African swine fever virus pA104R protein immunosuppression related amino acid site and application thereof Download PDFInfo
- Publication number
- CN114989266B CN114989266B CN202210721017.0A CN202210721017A CN114989266B CN 114989266 B CN114989266 B CN 114989266B CN 202210721017 A CN202210721017 A CN 202210721017A CN 114989266 B CN114989266 B CN 114989266B
- Authority
- CN
- China
- Prior art keywords
- pa104r
- protein
- lys
- amino acid
- arg
- Prior art date
- Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
- Active
Links
- 101710129917 Viral histone-like protein Proteins 0.000 title claims abstract description 92
- 150000001413 amino acids Chemical class 0.000 title claims abstract description 43
- 241000701386 African swine fever virus Species 0.000 title claims abstract description 37
- 230000001506 immunosuppresive effect Effects 0.000 title claims abstract description 28
- 206010062016 Immunosuppression Diseases 0.000 title claims abstract description 19
- 108090000623 proteins and genes Proteins 0.000 claims abstract description 28
- 102000004169 proteins and genes Human genes 0.000 claims abstract description 20
- 230000035772 mutation Effects 0.000 claims abstract description 17
- 208000007407 African swine fever Diseases 0.000 claims abstract description 14
- 229960005486 vaccine Drugs 0.000 claims abstract description 14
- 238000010362 genome editing Methods 0.000 claims abstract description 4
- 241000710777 Classical swine fever virus Species 0.000 claims abstract 3
- 241000700605 Viruses Species 0.000 claims description 5
- 201000010099 disease Diseases 0.000 claims description 4
- 208000037265 diseases, disorders, signs and symptoms Diseases 0.000 claims description 4
- 239000003814 drug Substances 0.000 claims description 4
- 229940079593 drug Drugs 0.000 claims description 3
- 108010041986 DNA Vaccines Proteins 0.000 claims description 2
- 229940021995 DNA vaccine Drugs 0.000 claims description 2
- 229940031567 attenuated vaccine Drugs 0.000 claims description 2
- 108700021021 mRNA Vaccine Proteins 0.000 claims description 2
- 229940126582 mRNA vaccine Drugs 0.000 claims description 2
- 229940031626 subunit vaccine Drugs 0.000 claims description 2
- 125000003275 alpha amino acid group Chemical group 0.000 claims 4
- 238000003745 diagnosis Methods 0.000 claims 2
- 229940126580 vector vaccine Drugs 0.000 claims 1
- 230000000694 effects Effects 0.000 abstract description 11
- 101100069975 Caenorhabditis elegans his-72 gene Proteins 0.000 abstract description 2
- 239000003443 antiviral agent Substances 0.000 abstract description 2
- 238000012216 screening Methods 0.000 abstract description 2
- 230000003313 weakening effect Effects 0.000 abstract 1
- 210000004027 cell Anatomy 0.000 description 25
- 239000013612 plasmid Substances 0.000 description 25
- 230000014509 gene expression Effects 0.000 description 14
- 238000000034 method Methods 0.000 description 9
- LOKCTEFSRHRXRJ-UHFFFAOYSA-I dipotassium trisodium dihydrogen phosphate hydrogen phosphate dichloride Chemical compound P(=O)(O)(O)[O-].[K+].P(=O)(O)([O-])[O-].[Na+].[Na+].[Cl-].[K+].[Cl-].[Na+] LOKCTEFSRHRXRJ-UHFFFAOYSA-I 0.000 description 8
- 239000002953 phosphate buffered saline Substances 0.000 description 8
- 210000002966 serum Anatomy 0.000 description 8
- 230000004568 DNA-binding Effects 0.000 description 7
- 238000002474 experimental method Methods 0.000 description 7
- 102000014150 Interferons Human genes 0.000 description 6
- 108010050904 Interferons Proteins 0.000 description 6
- 108010021466 Mutant Proteins Proteins 0.000 description 6
- 102000008300 Mutant Proteins Human genes 0.000 description 6
- 102000006381 STAT1 Transcription Factor Human genes 0.000 description 6
- 108010044012 STAT1 Transcription Factor Proteins 0.000 description 6
- 108010081691 STAT2 Transcription Factor Proteins 0.000 description 6
- 102000004265 STAT2 Transcription Factor Human genes 0.000 description 6
- 230000028993 immune response Effects 0.000 description 6
- 230000005764 inhibitory process Effects 0.000 description 6
- 229940079322 interferon Drugs 0.000 description 6
- 238000003670 luciferase enzyme activity assay Methods 0.000 description 6
- 238000001890 transfection Methods 0.000 description 6
- 108020004414 DNA Proteins 0.000 description 5
- 238000011161 development Methods 0.000 description 5
- 230000036039 immunity Effects 0.000 description 5
- 230000005847 immunogenicity Effects 0.000 description 5
- 230000015788 innate immune response Effects 0.000 description 5
- 238000005406 washing Methods 0.000 description 5
- YBJHBAHKTGYVGT-ZKWXMUAHSA-N (+)-Biotin Chemical compound N1C(=O)N[C@@H]2[C@H](CCCCC(=O)O)SC[C@@H]21 YBJHBAHKTGYVGT-ZKWXMUAHSA-N 0.000 description 4
- 108090000790 Enzymes Proteins 0.000 description 4
- 102000004190 Enzymes Human genes 0.000 description 4
- 101001032341 Homo sapiens Interferon regulatory factor 9 Proteins 0.000 description 4
- 102100038251 Interferon regulatory factor 9 Human genes 0.000 description 4
- 108060001084 Luciferase Proteins 0.000 description 4
- 239000005089 Luciferase Substances 0.000 description 4
- 241001465754 Metazoa Species 0.000 description 4
- 238000011529 RT qPCR Methods 0.000 description 4
- 230000000840 anti-viral effect Effects 0.000 description 4
- UQLDLKMNUJERMK-UHFFFAOYSA-L di(octadecanoyloxy)lead Chemical compound [Pb+2].CCCCCCCCCCCCCCCCCC([O-])=O.CCCCCCCCCCCCCCCCCC([O-])=O UQLDLKMNUJERMK-UHFFFAOYSA-L 0.000 description 4
- 238000001962 electrophoresis Methods 0.000 description 4
- 238000011534 incubation Methods 0.000 description 4
- 208000015181 infectious disease Diseases 0.000 description 4
- 239000007788 liquid Substances 0.000 description 4
- 239000000047 product Substances 0.000 description 4
- 238000003753 real-time PCR Methods 0.000 description 4
- 239000000243 solution Substances 0.000 description 4
- 230000000638 stimulation Effects 0.000 description 4
- 230000003612 virological effect Effects 0.000 description 4
- 238000002965 ELISA Methods 0.000 description 3
- 241000699666 Mus <mouse, genus> Species 0.000 description 3
- 230000003321 amplification Effects 0.000 description 3
- 239000000427 antigen Substances 0.000 description 3
- 108091007433 antigens Proteins 0.000 description 3
- 102000036639 antigens Human genes 0.000 description 3
- 238000006243 chemical reaction Methods 0.000 description 3
- 238000001514 detection method Methods 0.000 description 3
- 230000003053 immunization Effects 0.000 description 3
- 238000002649 immunization Methods 0.000 description 3
- 230000002163 immunogen Effects 0.000 description 3
- 230000007246 mechanism Effects 0.000 description 3
- 239000000203 mixture Substances 0.000 description 3
- 230000004048 modification Effects 0.000 description 3
- 238000012986 modification Methods 0.000 description 3
- 238000003199 nucleic acid amplification method Methods 0.000 description 3
- 230000004936 stimulating effect Effects 0.000 description 3
- 239000006228 supernatant Substances 0.000 description 3
- 230000008685 targeting Effects 0.000 description 3
- 239000013598 vector Substances 0.000 description 3
- 238000001262 western blot Methods 0.000 description 3
- CHFFHQUVXHEGBY-GARJFASQSA-N Ala-Lys-Pro Chemical compound C[C@@H](C(=O)N[C@@H](CCCCN)C(=O)N1CCC[C@@H]1C(=O)O)N CHFFHQUVXHEGBY-GARJFASQSA-N 0.000 description 2
- 208000031295 Animal disease Diseases 0.000 description 2
- 102000053602 DNA Human genes 0.000 description 2
- 239000012880 LB liquid culture medium Substances 0.000 description 2
- PXHVJJICTQNCMI-UHFFFAOYSA-N Nickel Chemical compound [Ni] PXHVJJICTQNCMI-UHFFFAOYSA-N 0.000 description 2
- 239000002033 PVDF binder Substances 0.000 description 2
- 108091027981 Response element Proteins 0.000 description 2
- 208000036142 Viral infection Diseases 0.000 description 2
- 230000009471 action Effects 0.000 description 2
- 239000002671 adjuvant Substances 0.000 description 2
- 230000001580 bacterial effect Effects 0.000 description 2
- 230000008901 benefit Effects 0.000 description 2
- 229960002685 biotin Drugs 0.000 description 2
- 235000020958 biotin Nutrition 0.000 description 2
- 239000011616 biotin Substances 0.000 description 2
- 230000000903 blocking effect Effects 0.000 description 2
- 239000003153 chemical reaction reagent Substances 0.000 description 2
- 238000003776 cleavage reaction Methods 0.000 description 2
- 230000009089 cytolysis Effects 0.000 description 2
- 210000000805 cytoplasm Anatomy 0.000 description 2
- 238000001976 enzyme digestion Methods 0.000 description 2
- 238000010166 immunofluorescence Methods 0.000 description 2
- 238000002347 injection Methods 0.000 description 2
- 239000007924 injection Substances 0.000 description 2
- 239000012528 membrane Substances 0.000 description 2
- 230000004719 natural immunity Effects 0.000 description 2
- 229920002981 polyvinylidene fluoride Polymers 0.000 description 2
- 230000008569 process Effects 0.000 description 2
- 230000009465 prokaryotic expression Effects 0.000 description 2
- 230000001681 protective effect Effects 0.000 description 2
- 108020003175 receptors Proteins 0.000 description 2
- 108091008146 restriction endonucleases Proteins 0.000 description 2
- 230000007017 scission Effects 0.000 description 2
- 238000000926 separation method Methods 0.000 description 2
- 230000019491 signal transduction Effects 0.000 description 2
- 230000011664 signaling Effects 0.000 description 2
- 238000012546 transfer Methods 0.000 description 2
- 229940125575 vaccine candidate Drugs 0.000 description 2
- 230000009385 viral infection Effects 0.000 description 2
- 108091032973 (ribonucleotides)n+m Proteins 0.000 description 1
- 102100027769 2'-5'-oligoadenylate synthase 1 Human genes 0.000 description 1
- AXAVXPMQTGXXJZ-UHFFFAOYSA-N 2-aminoacetic acid;2-amino-2-(hydroxymethyl)propane-1,3-diol Chemical compound NCC(O)=O.OCC(N)(CO)CO AXAVXPMQTGXXJZ-UHFFFAOYSA-N 0.000 description 1
- FWBHETKCLVMNFS-UHFFFAOYSA-N 4',6-Diamino-2-phenylindol Chemical compound C1=CC(C(=N)N)=CC=C1C1=CC2=CC=C(C(N)=N)C=C2N1 FWBHETKCLVMNFS-UHFFFAOYSA-N 0.000 description 1
- 101100224385 African swine fever virus (strain Badajoz 1971 Vero-adapted) Ba71V-155 gene Proteins 0.000 description 1
- QDRGPQWIVZNJQD-CIUDSAMLSA-N Ala-Arg-Gln Chemical compound [H]N[C@@H](C)C(=O)N[C@@H](CCCNC(N)=N)C(=O)N[C@@H](CCC(N)=O)C(O)=O QDRGPQWIVZNJQD-CIUDSAMLSA-N 0.000 description 1
- XCIGOVDXZULBBV-DCAQKATOSA-N Ala-Val-Lys Chemical compound CC(C)[C@H](NC(=O)[C@H](C)N)C(=O)N[C@@H](CCCCN)C(O)=O XCIGOVDXZULBBV-DCAQKATOSA-N 0.000 description 1
- XYOVHPDDWCEUDY-CIUDSAMLSA-N Asn-Ala-Leu Chemical compound [H]N[C@@H](CC(N)=O)C(=O)N[C@@H](C)C(=O)N[C@@H](CC(C)C)C(O)=O XYOVHPDDWCEUDY-CIUDSAMLSA-N 0.000 description 1
- 238000011725 BALB/c mouse Methods 0.000 description 1
- 206010004053 Bacterial toxaemia Diseases 0.000 description 1
- 241000283707 Capra Species 0.000 description 1
- 102000019034 Chemokines Human genes 0.000 description 1
- 108010012236 Chemokines Proteins 0.000 description 1
- 208000035473 Communicable disease Diseases 0.000 description 1
- 102000004127 Cytokines Human genes 0.000 description 1
- 108090000695 Cytokines Proteins 0.000 description 1
- 230000004543 DNA replication Effects 0.000 description 1
- 241000588724 Escherichia coli Species 0.000 description 1
- MADFVRSKEIEZHZ-DCAQKATOSA-N Gln-Gln-Lys Chemical compound C(CCN)C[C@@H](C(=O)O)NC(=O)[C@H](CCC(=O)N)NC(=O)[C@H](CCC(=O)N)N MADFVRSKEIEZHZ-DCAQKATOSA-N 0.000 description 1
- MTCXQQINVAFZKW-MNXVOIDGSA-N Gln-Ile-Lys Chemical compound CC[C@H](C)[C@@H](C(=O)N[C@@H](CCCCN)C(=O)O)NC(=O)[C@H](CCC(=O)N)N MTCXQQINVAFZKW-MNXVOIDGSA-N 0.000 description 1
- QLPYYTDOUQNJGQ-AVGNSLFASA-N Glu-His-Lys Chemical compound C1=C(NC=N1)C[C@@H](C(=O)N[C@@H](CCCCN)C(=O)O)NC(=O)[C@H](CCC(=O)O)N QLPYYTDOUQNJGQ-AVGNSLFASA-N 0.000 description 1
- IOUQWHIEQYQVFD-JYJNAYRXSA-N Glu-Leu-Tyr Chemical compound [H]N[C@@H](CCC(O)=O)C(=O)N[C@@H](CC(C)C)C(=O)N[C@@H](CC1=CC=C(O)C=C1)C(O)=O IOUQWHIEQYQVFD-JYJNAYRXSA-N 0.000 description 1
- FGGKGJHCVMYGCD-UKJIMTQDSA-N Glu-Val-Ile Chemical compound [H]N[C@@H](CCC(O)=O)C(=O)N[C@@H](C(C)C)C(=O)N[C@@H]([C@@H](C)CC)C(O)=O FGGKGJHCVMYGCD-UKJIMTQDSA-N 0.000 description 1
- BEQGFMIBZFNROK-JGVFFNPUSA-N Gly-Glu-Pro Chemical compound C1C[C@@H](N(C1)C(=O)[C@H](CCC(=O)O)NC(=O)CN)C(=O)O BEQGFMIBZFNROK-JGVFFNPUSA-N 0.000 description 1
- AYBKPDHHVADEDA-YUMQZZPRSA-N Gly-His-Asn Chemical compound [H]NCC(=O)N[C@@H](CC1=CNC=N1)C(=O)N[C@@H](CC(N)=O)C(O)=O AYBKPDHHVADEDA-YUMQZZPRSA-N 0.000 description 1
- ITZOBNKQDZEOCE-NHCYSSNCSA-N Gly-Ile-Lys Chemical compound CC[C@H](C)[C@@H](C(=O)N[C@@H](CCCCN)C(=O)O)NC(=O)CN ITZOBNKQDZEOCE-NHCYSSNCSA-N 0.000 description 1
- 102100031181 Glyceraldehyde-3-phosphate dehydrogenase Human genes 0.000 description 1
- 206010062713 Haemorrhagic diathesis Diseases 0.000 description 1
- WCNXUTNLSRWWQN-DCAQKATOSA-N His-Asp-Met Chemical compound CSCC[C@@H](C(=O)O)NC(=O)[C@H](CC(=O)O)NC(=O)[C@H](CC1=CN=CN1)N WCNXUTNLSRWWQN-DCAQKATOSA-N 0.000 description 1
- 101001008907 Homo sapiens 2'-5'-oligoadenylate synthase 1 Proteins 0.000 description 1
- 101100341166 Homo sapiens IRF9 gene Proteins 0.000 description 1
- 101000844245 Homo sapiens Non-receptor tyrosine-protein kinase TYK2 Proteins 0.000 description 1
- 101000585484 Homo sapiens Signal transducer and activator of transcription 1-alpha/beta Proteins 0.000 description 1
- 101000997835 Homo sapiens Tyrosine-protein kinase JAK1 Proteins 0.000 description 1
- 101150002750 IFIT1 gene Proteins 0.000 description 1
- 101150074358 IFIT2 gene Proteins 0.000 description 1
- 108091054729 IRF family Proteins 0.000 description 1
- 102000043138 IRF family Human genes 0.000 description 1
- TZCGZYWNIDZZMR-NAKRPEOUSA-N Ile-Arg-Ala Chemical compound CC[C@H](C)[C@@H](C(=O)N[C@@H](CCCN=C(N)N)C(=O)N[C@@H](C)C(=O)O)N TZCGZYWNIDZZMR-NAKRPEOUSA-N 0.000 description 1
- TZCGZYWNIDZZMR-UHFFFAOYSA-N Ile-Arg-Ala Natural products CCC(C)C(N)C(=O)NC(C(=O)NC(C)C(O)=O)CCCN=C(N)N TZCGZYWNIDZZMR-UHFFFAOYSA-N 0.000 description 1
- RIVKTKFVWXRNSJ-GRLWGSQLSA-N Ile-Ile-Gln Chemical compound CC[C@H](C)[C@@H](C(=O)N[C@@H]([C@@H](C)CC)C(=O)N[C@@H](CCC(=O)N)C(=O)O)N RIVKTKFVWXRNSJ-GRLWGSQLSA-N 0.000 description 1
- FQYQMFCIJNWDQZ-CYDGBPFRSA-N Ile-Pro-Pro Chemical compound CC[C@H](C)[C@H](N)C(=O)N1CCC[C@H]1C(=O)N1[C@H](C(O)=O)CCC1 FQYQMFCIJNWDQZ-CYDGBPFRSA-N 0.000 description 1
- 108010065920 Insulin Lispro Proteins 0.000 description 1
- 102000002227 Interferon Type I Human genes 0.000 description 1
- 108010014726 Interferon Type I Proteins 0.000 description 1
- 102100027355 Interferon-induced protein with tetratricopeptide repeats 1 Human genes 0.000 description 1
- 230000004163 JAK-STAT signaling pathway Effects 0.000 description 1
- SQJSXOQXJYAVRV-SRVKXCTJSA-N Lys-His-Asn Chemical compound C1=C(NC=N1)C[C@@H](C(=O)N[C@@H](CC(=O)N)C(=O)O)NC(=O)[C@H](CCCCN)N SQJSXOQXJYAVRV-SRVKXCTJSA-N 0.000 description 1
- WBSCNDJQPKSPII-KKUMJFAQSA-N Lys-Lys-Lys Chemical compound NCCCC[C@H](N)C(=O)N[C@@H](CCCCN)C(=O)N[C@@H](CCCCN)C(O)=O WBSCNDJQPKSPII-KKUMJFAQSA-N 0.000 description 1
- YSPZCHGIWAQVKQ-AVGNSLFASA-N Lys-Pro-Val Chemical compound CC(C)[C@@H](C(O)=O)NC(=O)[C@@H]1CCCN1C(=O)[C@@H](N)CCCCN YSPZCHGIWAQVKQ-AVGNSLFASA-N 0.000 description 1
- DBMLDOWSVHMQQN-XGEHTFHBSA-N Met-Ser-Thr Chemical compound CSCC[C@H](N)C(=O)N[C@@H](CO)C(=O)N[C@@H]([C@@H](C)O)C(O)=O DBMLDOWSVHMQQN-XGEHTFHBSA-N 0.000 description 1
- 108700005084 Multigene Family Proteins 0.000 description 1
- 241000699670 Mus sp. Species 0.000 description 1
- 102100032028 Non-receptor tyrosine-protein kinase TYK2 Human genes 0.000 description 1
- 108091028043 Nucleic acid sequence Proteins 0.000 description 1
- 229930040373 Paraformaldehyde Natural products 0.000 description 1
- GNRMAQSIROFNMI-IXOXFDKPSA-N Phe-Thr-Ser Chemical compound [H]N[C@@H](CC1=CC=CC=C1)C(=O)N[C@@H]([C@@H](C)O)C(=O)N[C@@H](CO)C(O)=O GNRMAQSIROFNMI-IXOXFDKPSA-N 0.000 description 1
- MSSXKZBDKZAHCX-UNQGMJICSA-N Phe-Thr-Val Chemical compound [H]N[C@@H](CC1=CC=CC=C1)C(=O)N[C@@H]([C@@H](C)O)C(=O)N[C@@H](C(C)C)C(O)=O MSSXKZBDKZAHCX-UNQGMJICSA-N 0.000 description 1
- 102000004160 Phosphoric Monoester Hydrolases Human genes 0.000 description 1
- 108090000608 Phosphoric Monoester Hydrolases Proteins 0.000 description 1
- 206010035664 Pneumonia Diseases 0.000 description 1
- 229920001213 Polysorbate 20 Polymers 0.000 description 1
- HFZNNDWPHBRNPV-KZVJFYERSA-N Pro-Ala-Thr Chemical compound [H]N1CCC[C@H]1C(=O)N[C@@H](C)C(=O)N[C@@H]([C@@H](C)O)C(O)=O HFZNNDWPHBRNPV-KZVJFYERSA-N 0.000 description 1
- CHYAYDLYYIJCKY-OSUNSFLBSA-N Pro-Thr-Ile Chemical compound [H]N1CCC[C@H]1C(=O)N[C@@H]([C@@H](C)O)C(=O)N[C@@H]([C@@H](C)CC)C(O)=O CHYAYDLYYIJCKY-OSUNSFLBSA-N 0.000 description 1
- 238000002123 RNA extraction Methods 0.000 description 1
- 108020004682 Single-Stranded DNA Proteins 0.000 description 1
- 108020004459 Small interfering RNA Proteins 0.000 description 1
- 108010090804 Streptavidin Proteins 0.000 description 1
- 101710172711 Structural protein Proteins 0.000 description 1
- 241000282898 Sus scrofa Species 0.000 description 1
- 239000006180 TBST buffer Substances 0.000 description 1
- CJXURNZYNHCYFD-WDCWCFNPSA-N Thr-Lys-Gln Chemical compound C[C@H]([C@@H](C(=O)N[C@@H](CCCCN)C(=O)N[C@@H](CCC(=O)N)C(=O)O)N)O CJXURNZYNHCYFD-WDCWCFNPSA-N 0.000 description 1
- 208000013222 Toxemia Diseases 0.000 description 1
- 239000013504 Triton X-100 Substances 0.000 description 1
- 229920004890 Triton X-100 Polymers 0.000 description 1
- 102100033438 Tyrosine-protein kinase JAK1 Human genes 0.000 description 1
- HTONZBWRYUKUKC-RCWTZXSCSA-N Val-Thr-Val Chemical compound CC(C)[C@H](N)C(=O)N[C@@H]([C@@H](C)O)C(=O)N[C@@H](C(C)C)C(O)=O HTONZBWRYUKUKC-RCWTZXSCSA-N 0.000 description 1
- 108020005202 Viral DNA Proteins 0.000 description 1
- 230000002411 adverse Effects 0.000 description 1
- 238000001042 affinity chromatography Methods 0.000 description 1
- 238000004458 analytical method Methods 0.000 description 1
- 238000000137 annealing Methods 0.000 description 1
- 230000003042 antagnostic effect Effects 0.000 description 1
- 239000003242 anti bacterial agent Substances 0.000 description 1
- 230000002924 anti-infective effect Effects 0.000 description 1
- 229940088710 antibiotic agent Drugs 0.000 description 1
- 206010003246 arthritis Diseases 0.000 description 1
- 108010010430 asparagine-proline-alanine Proteins 0.000 description 1
- 238000003556 assay Methods 0.000 description 1
- 230000002238 attenuated effect Effects 0.000 description 1
- 239000011324 bead Substances 0.000 description 1
- 230000009286 beneficial effect Effects 0.000 description 1
- 230000027455 binding Effects 0.000 description 1
- 239000012148 binding buffer Substances 0.000 description 1
- 210000004369 blood Anatomy 0.000 description 1
- 239000008280 blood Substances 0.000 description 1
- UDSAIICHUKSCKT-UHFFFAOYSA-N bromophenol blue Chemical compound C1=C(Br)C(O)=C(Br)C=C1C1(C=2C=C(Br)C(O)=C(Br)C=2)C2=CC=CC=C2S(=O)(=O)O1 UDSAIICHUKSCKT-UHFFFAOYSA-N 0.000 description 1
- 239000007853 buffer solution Substances 0.000 description 1
- 238000004113 cell culture Methods 0.000 description 1
- 239000013592 cell lysate Substances 0.000 description 1
- 210000000170 cell membrane Anatomy 0.000 description 1
- 238000005119 centrifugation Methods 0.000 description 1
- 238000010367 cloning Methods 0.000 description 1
- 239000011248 coating agent Substances 0.000 description 1
- 238000000576 coating method Methods 0.000 description 1
- 230000000295 complement effect Effects 0.000 description 1
- 239000002299 complementary DNA Substances 0.000 description 1
- 150000001875 compounds Chemical class 0.000 description 1
- 238000010276 construction Methods 0.000 description 1
- 238000012258 culturing Methods 0.000 description 1
- 238000013211 curve analysis Methods 0.000 description 1
- 230000007123 defense Effects 0.000 description 1
- 238000013461 design Methods 0.000 description 1
- 238000009792 diffusion process Methods 0.000 description 1
- 238000010790 dilution Methods 0.000 description 1
- 239000012895 dilution Substances 0.000 description 1
- 229940042399 direct acting antivirals protease inhibitors Drugs 0.000 description 1
- 238000004090 dissolution Methods 0.000 description 1
- 238000001035 drying Methods 0.000 description 1
- 230000009977 dual effect Effects 0.000 description 1
- 230000001804 emulsifying effect Effects 0.000 description 1
- 238000011013 endotoxin removal Methods 0.000 description 1
- 239000013613 expression plasmid Substances 0.000 description 1
- 238000000605 extraction Methods 0.000 description 1
- 230000002349 favourable effect Effects 0.000 description 1
- 239000012634 fragment Substances 0.000 description 1
- 238000001502 gel electrophoresis Methods 0.000 description 1
- 238000012224 gene deletion Methods 0.000 description 1
- 108020004445 glyceraldehyde-3-phosphate dehydrogenase Proteins 0.000 description 1
- 230000036541 health Effects 0.000 description 1
- 208000031169 hemorrhagic disease Diseases 0.000 description 1
- 239000000833 heterodimer Substances 0.000 description 1
- 208000021760 high fever Diseases 0.000 description 1
- 230000007236 host immunity Effects 0.000 description 1
- 102000051839 human STAT1 Human genes 0.000 description 1
- 238000003384 imaging method Methods 0.000 description 1
- 230000001939 inductive effect Effects 0.000 description 1
- 230000002458 infectious effect Effects 0.000 description 1
- 239000003112 inhibitor Substances 0.000 description 1
- 230000002401 inhibitory effect Effects 0.000 description 1
- 210000005007 innate immune system Anatomy 0.000 description 1
- 108010031424 isoleucyl-prolyl-proline Proteins 0.000 description 1
- BPHPUYQFMNQIOC-NXRLNHOXSA-N isopropyl beta-D-thiogalactopyranoside Chemical compound CC(C)S[C@@H]1O[C@H](CO)[C@H](O)[C@H](O)[C@H]1O BPHPUYQFMNQIOC-NXRLNHOXSA-N 0.000 description 1
- 108010034529 leucyl-lysine Proteins 0.000 description 1
- 230000000670 limiting effect Effects 0.000 description 1
- 230000004807 localization Effects 0.000 description 1
- 230000007774 longterm Effects 0.000 description 1
- 239000006166 lysate Substances 0.000 description 1
- 108010038320 lysylphenylalanine Proteins 0.000 description 1
- 238000004519 manufacturing process Methods 0.000 description 1
- 239000000463 material Substances 0.000 description 1
- 239000002609 medium Substances 0.000 description 1
- 229910052759 nickel Inorganic materials 0.000 description 1
- 230000025308 nuclear transport Effects 0.000 description 1
- 102000039446 nucleic acids Human genes 0.000 description 1
- 108020004707 nucleic acids Proteins 0.000 description 1
- 150000007523 nucleic acids Chemical class 0.000 description 1
- 230000008520 organization Effects 0.000 description 1
- 238000004806 packaging method and process Methods 0.000 description 1
- 229920002866 paraformaldehyde Polymers 0.000 description 1
- 239000002245 particle Substances 0.000 description 1
- 239000000137 peptide hydrolase inhibitor Substances 0.000 description 1
- RGCLLPNLLBQHPF-HJWRWDBZSA-N phosphamidon Chemical compound CCN(CC)C(=O)C(\Cl)=C(/C)OP(=O)(OC)OC RGCLLPNLLBQHPF-HJWRWDBZSA-N 0.000 description 1
- 230000026731 phosphorylation Effects 0.000 description 1
- 238000006366 phosphorylation reaction Methods 0.000 description 1
- 239000000256 polyoxyethylene sorbitan monolaurate Substances 0.000 description 1
- 235000010486 polyoxyethylene sorbitan monolaurate Nutrition 0.000 description 1
- 235000015277 pork Nutrition 0.000 description 1
- 230000035755 proliferation Effects 0.000 description 1
- 108010015796 prolylisoleucine Proteins 0.000 description 1
- 230000009822 protein phosphorylation Effects 0.000 description 1
- 230000010076 replication Effects 0.000 description 1
- 238000010839 reverse transcription Methods 0.000 description 1
- 230000007651 self-proliferation Effects 0.000 description 1
- 238000012163 sequencing technique Methods 0.000 description 1
- 235000020183 skimmed milk Nutrition 0.000 description 1
- 229940126586 small molecule drug Drugs 0.000 description 1
- 238000002415 sodium dodecyl sulfate polyacrylamide gel electrophoresis Methods 0.000 description 1
- 238000006467 substitution reaction Methods 0.000 description 1
- 108010061238 threonyl-glycine Proteins 0.000 description 1
- 238000013518 transcription Methods 0.000 description 1
- 230000035897 transcription Effects 0.000 description 1
- 239000012096 transfection reagent Substances 0.000 description 1
- 230000001131 transforming effect Effects 0.000 description 1
- 239000013638 trimer Substances 0.000 description 1
- 238000002255 vaccination Methods 0.000 description 1
- 108010073969 valyllysine Proteins 0.000 description 1
- 210000003462 vein Anatomy 0.000 description 1
- 230000007502 viral entry Effects 0.000 description 1
- 229940023147 viral vector vaccine Drugs 0.000 description 1
- 239000002699 waste material Substances 0.000 description 1
Classifications
-
- C—CHEMISTRY; METALLURGY
- C07—ORGANIC CHEMISTRY
- C07K—PEPTIDES
- C07K14/00—Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof
- C07K14/005—Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof from viruses
-
- A—HUMAN NECESSITIES
- A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
- A61K—PREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
- A61K39/00—Medicinal preparations containing antigens or antibodies
- A61K39/12—Viral antigens
-
- A—HUMAN NECESSITIES
- A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
- A61P—SPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
- A61P31/00—Antiinfectives, i.e. antibiotics, antiseptics, chemotherapeutics
- A61P31/12—Antivirals
- A61P31/20—Antivirals for DNA viruses
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12N—MICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
- C12N15/00—Mutation or genetic engineering; DNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purification; Use of hosts therefor
- C12N15/09—Recombinant DNA-technology
- C12N15/63—Introduction of foreign genetic material using vectors; Vectors; Use of hosts therefor; Regulation of expression
- C12N15/70—Vectors or expression systems specially adapted for E. coli
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12N—MICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
- C12N15/00—Mutation or genetic engineering; DNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purification; Use of hosts therefor
- C12N15/09—Recombinant DNA-technology
- C12N15/63—Introduction of foreign genetic material using vectors; Vectors; Use of hosts therefor; Regulation of expression
- C12N15/79—Vectors or expression systems specially adapted for eukaryotic hosts
- C12N15/85—Vectors or expression systems specially adapted for eukaryotic hosts for animal cells
-
- A—HUMAN NECESSITIES
- A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
- A61K—PREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
- A61K39/00—Medicinal preparations containing antigens or antibodies
- A61K2039/55—Medicinal preparations containing antigens or antibodies characterised by the host/recipient, e.g. newborn with maternal antibodies
- A61K2039/552—Veterinary vaccine
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12N—MICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
- C12N2710/00—MICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA dsDNA viruses
- C12N2710/00011—Details
- C12N2710/12011—Asfarviridae
- C12N2710/12022—New viral proteins or individual genes, new structural or functional aspects of known viral proteins or genes
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12N—MICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
- C12N2710/00—MICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA dsDNA viruses
- C12N2710/00011—Details
- C12N2710/12011—Asfarviridae
- C12N2710/12034—Use of virus or viral component as vaccine, e.g. live-attenuated or inactivated virus, VLP, viral protein
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12N—MICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
- C12N2800/00—Nucleic acids vectors
- C12N2800/10—Plasmid DNA
- C12N2800/106—Plasmid DNA for vertebrates
- C12N2800/107—Plasmid DNA for vertebrates for mammalian
-
- Y—GENERAL TAGGING OF NEW TECHNOLOGICAL DEVELOPMENTS; GENERAL TAGGING OF CROSS-SECTIONAL TECHNOLOGIES SPANNING OVER SEVERAL SECTIONS OF THE IPC; TECHNICAL SUBJECTS COVERED BY FORMER USPC CROSS-REFERENCE ART COLLECTIONS [XRACs] AND DIGESTS
- Y02—TECHNOLOGIES OR APPLICATIONS FOR MITIGATION OR ADAPTATION AGAINST CLIMATE CHANGE
- Y02A—TECHNOLOGIES FOR ADAPTATION TO CLIMATE CHANGE
- Y02A50/00—TECHNOLOGIES FOR ADAPTATION TO CLIMATE CHANGE in human health protection, e.g. against extreme weather
- Y02A50/30—Against vector-borne diseases, e.g. mosquito-borne, fly-borne, tick-borne or waterborne diseases whose impact is exacerbated by climate change
Abstract
The invention discloses an African swine fever virus pA104R protein immunosuppression related amino acid site and application thereof, and belongs to the technical field of biology. The invention discovers that the amino acid sites related to the immunosuppression of the pA104R protein of the African swine fever virus are Arg 69, his 72, lys 92, arg 94 and Lys 97, and the immunosuppression capability of the pA104R protein after the mutation of the sites is obviously weakened. The loci can be used as gene editing loci for weakening African swine fever virus and as anti-African swine fever virus targets for screening antiviral drugs. The pA104R protein with the site mutation can be used for preparing African swine fever vaccines, and the mutant pA104R can play the immunoprotection function of the protein by introducing the mutant pA104R into the vaccine, so that the protein has the immunosuppression characteristic and a better protection effect is realized.
Description
Technical Field
The invention belongs to the technical field of biology, and particularly relates to an African swine fever virus pA104R protein immunosuppression related amino acid site and application thereof.
Background
African Swine Fever (ASF) is an infectious, septic disease characterized by high fever, toxemia, hemorrhagic diathesis, and high mortality. Is a virulent infectious disease caused by African Swine Fever Virus (ASFV) (S.Blome et al 2020). The world animal health Organization (OIE) is listed as a legal report of diseases, which is also listed as a major precaution class of animal diseases in China.
ASF was first shown in the Kennel of Africa in 1921 and then rapidly spread across multiple countries and regions worldwide. Because China is the largest pork producing country and consuming country in the world, the ASF is particularly seriously affected by the introduction of ASF into China, and huge economic loss is caused to pig industry.
Although vaccination is an ideal method for controlling most animal diseases (Emad BeshirAta et al, 2020). However, due to the complexity of viral genomes and viral compositions, the mechanism of immunity and infection is not clear and is a major obstacle to vaccine development. Although the attenuated live vaccine with the gene deletion can induce a certain protective effect, adverse clinical reactions exist at the same time, including arthritis and pneumonia which are accompanied by some immunized animals and the risk of strong strain return (P.J.S. NChez-Cord delta n et al, 2017). Relatively safe inactivated viral particles are not resistant to viral attack (s.blome et al, 2014). To date, there are no commercial vaccines and effective antiviral drugs available for preventing and controlling ASFV infections. Therefore, by studying the function of the key genes of viruses, it is a key step in developing vaccines to analyze their role in the immune process of the organism.
The natural immune response of the body is the first line of defense of the body against viral entry and is critical to prevent viral infection and to clear the virus, with type I interferon (IFN-I) being an important aspect of the natural immune response. IFN-I can act on most cells and induce antiviral state, increase MHC expression, induce production of chemokines and cytokines, and coordinate and promote immune response. IFN-I binds to specific receptors on cell membranes, initiates a cascade of signal amplification processes, initiates a JAK-STAT signaling pathway, IFN binds to the receptors to activate JAK1 and TYK2, phosphorylates STAT1 and STAT2 to form heterodimers, and recruits IRF9 to form ISGF3 into the nucleus to bind to the interferon stimulating response element ISRE, promote expression of the interferon stimulating gene ISGs, promote natural immune response and exert antiviral function.
Viruses also form an effective strategy and mechanism for escaping host innate immunity during long-term evolution. The ASFV genome has been shown to encode a variety of proteins to regulate host cell protein expression, interfere with the host's innate immune system, thereby suppressing and evading the host's immune response, creating advantages for self-proliferation, diffusion (Dixon et al, 2004; luisa et al, 2016). Wherein, such as multi-gene family proteins MGF360, MGF505/530, DP96R and I329L can inhibit I-type interferon signal paths and escape host anti-infection immunity. Thus revealing the potential mechanism by which ASFV interacts with the host is critical to the development of effective ASFV vaccines and pharmaceuticals.
pA104R is a structural protein with histone-like characteristics encoded by African swine fever virus, and is involved in viral DNA replication, transcription, and genome packaging, a protein necessary for ASFV replication. pA104R is strongly immunogenic and is capable of inducing higher antibody levels in virally infected animals and is considered a very valuable vaccine candidate. Animal immunization with pA104R as an antigen has been reported, but no good protective effect was obtained.
Disclosure of Invention
The invention discovers that pA104R can escape from a host to produce natural immunity, block IFN-I signal transduction, inhibit the expression of interferon stimulated genes and provide favorable conditions for the proliferation of viruses. Furthermore, the invention discovers a key amino acid site of pA104R which plays an immunosuppressive function, the immunosuppressive ability of pA104R is obviously weakened after the mutation, and the mutation does not influence the expression of the protein.
The primary object of the present invention is to provide an amino acid site related to the immunosuppression of the African swine fever virus pA104R protein, another object of the present invention is to provide an African swine fever virus pA104R mutant protein, and still another object of the present invention is to provide an application of the amino acid site or mutant protein.
The aim of the invention is achieved by the following technical scheme:
amino acid sites related to the immunosuppression of the African swine fever virus pA104R protein are Arg 69, his 72, lys 92, arg 94 and Lys 97 of the pA104R protein. The amino acid sequence of the pA104R protein is as follows:
MSTKKKPTITKQELYSLVAADTQLNKALIERIFTSQQKIIQNALKHNQEVIIPPGIKFTVVTVKAKPARQGHNPATGEPIQIKAKPEHKAVKIRALKPVHDMLN(SEQ ID NO.1)。
an african swine fever virus pA104R mutein is a pA104R protein mutated in one or more of the above sites. Furthermore, one or more of 69, 72, 92, 94 and 97 amino acids of the African swine fever virus pA104R mutant protein are mutated into Asp, glu or Ala and the like.
The African swine fever virus pA104R mutant protein may also be a pA104R protein deleted at one or more of the above sites, or a pA104R protein deleted in a fragment containing one or more of the above sites.
The use of the above amino acid sites as gene editing sites, wherein one or more of the amino acid sites is mutated in ASFV by gene editing to attenuate the immunosuppressive properties of pA104R and thereby attenuate the ASFV.
The application of the amino acid sites as anti-ASFV targets, screening compounds or small molecule drugs capable of targeting one or more of the amino acid sites, and eliminating ASFV immunosuppression characteristics by targeting the sites to enhance the antiviral immunity of the organism.
The application of the African swine fever virus pA104R mutant protein in preparing African swine fever vaccine comprises an ASFV attenuated vaccine, a subunit vaccine, a DNA vaccine, an mRNA vaccine, a viral vector vaccine and the like. The mutant pA104R introduced into the vaccine can play the immunoprotection function of the protein, eliminate the immunosuppressive property of the protein and realize better protection effect.
An african swine fever vaccine capable of expressing the african swine fever virus pA104R mutein described above.
An anti-ASFV drug that is capable of targeting one or more of the amino acid positions described above.
The invention has the advantages and beneficial effects that: the invention discovers that the African swine fever virus pA104R protein immunosuppression related amino acid locus provides a new material for preparing African swine fever vaccine and provides a new direction for preparing African swine fever virus resistant medicines.
Drawings
FIG. 1 shows the results of the immunogenicity and immunosuppressive properties of pA 104R. A: western blot results, B: double luciferase assay detection ISRE promoter activity results, C: fluorescent quantitative PCR results, wherein Vector, A104R are cells transfected with pCAGGS-HA empty and pCAGGS-HA-A104R plasmids, respectively.
FIG. 2 shows the results of the determination of the pA104R immunosuppressive function target. A: western blot results, B: indirect immunofluorescence results, C: DNA Pulldown results, D: double luciferase assay detection ISRE promoter activity results, E: fluorescent quantitative PCR results.
FIG. 3 shows the result of immunogenicity of the pA104R amino acid site mutein. Wherein the immune serum is the serum of the mice immunized by the immune pA104R mutant protein, and the control serum is immunized by PBS (phosphate buffered saline) as a control.
Detailed Description
The following examples are provided to further illustrate the present invention and should not be construed as limiting the invention, and any other changes, modifications, substitutions, combinations, and simplifications that do not depart from the spirit and principles of the invention are intended to be equivalent substitutes. The technical means used in the detailed description are conventional, if not specified, procedures well known to those skilled in the art.
TABLE 1 primers used in the examples below
Example 1pA104R has immunogenic and immunosuppressive properties
The ASFV inactivated nucleic acid is used as a template to amplify the A104R gene (the amplification primer is HA-A104R-F, hA-A 104R-F), the gene is inserted between restriction enzyme EcoRI and XhoI cleavage sites of a pCAGGS-HA vector to obtain a pCAGGS-HA-A104R plasmid, the pCAGGS-HA-A104R plasmid is amplified by using escherichia coli after sequencing and comparison, and the plasmid is extracted by using an Omega endotoxin removal plasmid extraction kit.
HEK293T cells were plated into corresponding cell culture dishes, and when the cells grew to 80%, pCAGGS-HA-A104R plasmid and pCAGGS-HA empty control were transfected into the cells, plasmid transfection was performed using jetPRIME Versatile DNA/siRNA transfection reagent of Polyplus Transfection and performed according to the instructions. After 24h transfection, the medium was discarded, a cell lysate containing protease inhibitors and phosphatase inhibitors was added to the cells, after sufficient lysis on ice, the lysate was gently scraped off with a cell scraper and transferred to a 1.5mL centrifuge tube, and the supernatant was collected as a cell protein sample by centrifugation at 15000g for 10min at 4 ℃, and subjected to SDS-PAGE gel electrophoresis and western immunoblotting: 10-15% of separation gel and 5% of concentrated gel are prepared, tris glycine electrophoresis buffer solution is added to operate at 80V, the voltage is adjusted to 120V when bromophenol blue indicates that the separation gel is entered, and the target strip is stopped when the target strip is migrated to a proper position. After the electrophoresis, the gel and PVDF membrane were loaded into an electrophoresis tank according to the instructions of a Bio-RAD electrophoresis apparatus. The transfer condition is a constant current 330mA transfer for 1h. The protein-transferred PVDF membrane was blocked in TBST (containing 5% BSA) at room temperature for 2 hours, followed by incubation with ASFV-positive serum as antibody, and color development was performed using a chemiluminescent imaging system. As shown in FIG. 1-A, pA104R was able to react strongly with positive serum compared to the control group, demonstrating that pA104R was more immunogenic and was able to stimulate an immune response in the body during viral infection.
ISRE promoter activity was detected by double luciferase assay: the pCAGGS-HA-A104R plasmid and the pCAGGS-HA empty plasmid were transfected into HEK293T cells co-transfected with the pIRRE-Luc luciferase plasmid and the pRL-TK internal reference plasmid, and after 24 hours of transfection, IFN- α (1000U/mL) was added to stimulate for 8 hours, and ISRE promoter activity was detected by referring to Promega company double luciferase assay kit instructions. As shown in the experimental results in FIG. 1-B, compared with the control group pA104R in the double luciferase experiment, the promoter activity of the ISRE can be obviously inhibited, so that the pA104R has the characteristic of inhibiting IFN-I signal transduction.
To confirm further inhibition of native host immunity by pA104R, IFN- α (1000U/mL) was added to HEK293T cells transfected with pCAGGS-HA-A104R plasmid and pCAGGS-HA empty, and the cells were washed 3 times with pre-chilled sterile PBS, the waste liquid was discarded, 1mL TRIpure Reagent reagent (Beijing Edley Biotechnology Co., ltd.) was added to the cells, and after sufficient lysis, the cells were transferred to an RNase-free 1.5mL centrifuge tube for RNA extraction according to the product instructions. A cDNA template was prepared using HiScript II Q RT SuperMix for qPCR reverse transcription kit (Nanjinouzan Biotechnology Co., ltd.) after the concentration and purity of the obtained total RNA were measured and qPCR was performed to detect gene expression: according to the coding sequences of target genes ISG54, ISG56 and OAS1 searched in NCBI database, using Beacon identifier 8 software to make primer design (table 1) suitable for SYBR method fluorescence quantitative PCR, uniformly setting primer annealing temperature to 60 ℃, amplification product length to 80-200bp, primer length to 18-24nt, and using GAPDH as reference gene. 3 repeats are carried out on each sample, after the reaction is finished, the dissolution curve analysis is carried out by using software matched with a fluorescent quantitative PCR instrument, and the analysis is carried out byThe relative gene expression differences were analyzed by the method. The experimental results are shown in FIG. 1-C, where ISGs expression in control cells can be significantly increased under the action of IFNα, but ISGs expression in pA104R transfected cells was significantly inhibited. This is consistent with the results of the dual luciferase assay, and thus it was determined that pA104R has immunosuppressive function.
Example 2pA104R immunosuppression functional target determination
Since IFN-I signaling is primarily a heterodimer of STAT1 and STAT2 phosphorylated in the cytoplasm and recruited to IRF9 to form an ISGF3 heterotrimer and then into the nucleus for immunization. Thus, to determine the action target of pA104R, STAT1, STAT2 and IRF9 protein levels as well as phosphorylation levels were first examined. Transfection of the pCAGGS-HA-A104R plasmid and pCAGGS-HA empty control in HEK293T cells protein samples were harvested 2h after stimulation with IFNα (1000U/mL) for WB experiments, as shown in FIG. 2-A, indicating that pA104R had no effect on STAT1, STAT2 and IRF 9. An indirect immunofluorescence experiment was performed again under the same conditions: HEK293T cells were inoculated into confocal dishes, transfected with pCAGGS-HA-A104R plasmid for 24h, treated with IFNα for 2h, the supernatant was discarded, and washed 1-2 times with pre-chilled PBS. 4% paraformaldehyde was added for fixation for 20min. After washing, 0.25% Triton X-100 was added for 15min. After washing, the mixture was blocked by adding 5% BSA (diluted with PBS) for 1h. After washing, the antibody was added for incubation for 1h, after washing 3 times, DAPI was added for incubation for 5min, and then washed again, followed by observation under a laser confocal microscope. As a result, as shown in fig. 2-B, STAT1 localization in cells under ifnα stimulation was transferred from cytoplasm to nucleus, whereas the presence or absence of pA104R had no effect on this, and thus inhibition of natural immunity by pA104R was not responsible for ISGF3 protein phosphorylation and nuclear transport.
After entering the nucleus, ISGF3 trimer needs to be combined with a specific DNA sequence (an interferon stimulation response element ISRE) and then starts the expression of an interferon stimulation gene ISGs to play an antiviral immunity role. Because pA104R has DNA binding property, it is hypothesized whether pA104R binds to ISRE through its DNA binding property, thus antagonizing blocking of signaling caused by binding of ISGF3 to ISRE, pEGFP-N1-STAT1, pEGFP-N1-STAT2 and pEGFP-N1-IRF9 plasmids were co-transformed in HEK293T cells (cloning human STAT1, STAT2, IRF9 gene sequences into pEGFP-N1 plasmids to enable corresponding expression of STAT1, STAT2, IRF9 proteins) and pCAGGS-HA-A104R plasmids, and after 24h transfection, adding IFN alpha (1000U/mL) to stimulate 8h protein collection samples for DNA pulldown experiments: biotin-labeled ISRE sequence Biotin-ISRE-F, biotin-ISRE-R (Table 1) was synthesized by Nanjing Jinsrey corporation, complementary single-stranded DNA was diluted to 100. Mu.M, mixed at 1:1, denatured at 100℃for 1h, then naturally annealed to form double-stranded DNA, and the streptavidin magnetic beads added to MCE corporation were subjected to spin incubation at 4℃for 4-6h, then washed 5 times, and then detected by WB assay. As a result, as shown in FIG. 2-C, biotin-labeled ISRE was able to bind to ISGF3 normally, but was not affected by pA104R, so pA104R did not suppress innate immunity through DNA binding capacity.
Although inhibition of pA104R against innate immunity is independent of its DNA binding properties, mutations at amino acid positions (amino acids 69, 72, 92 and 94, 97) associated with DNA binding of pA104R protein are able to restore its immunosuppressive capacity. We constructed pA104R protein amino acid point mutation plasmid construction: the plasmid is subjected to point mutation by a PCR method, a corresponding point mutation primer (table 1) is adopted to amplify a pCAGGS-HA-A104R wild type plasmid as a template, the amplified product is subjected to enzyme digestion by Dpn I enzyme, and the enzyme digestion product is converted into competent cells DH5 alpha, so that mutant plasmids pCAGGS-HA-A104R-R/H69/72D (namely, the 69 th amino acid and 72 th amino acid of pA104R protein are mutated into Asp) and pCAGGS-HA-A104R-K/R92/94/97E (namely, the 92 th amino acid, 94 th amino acid and 97 th amino acid of pA104R protein are mutated into Glu) are constructed. Double luciferase and qPCR experiments were performed on wild-type pCAGGS-HA-A104R and mutant plasmids pCAGGS-HA-A104R-R/H69/72D and pCAGGS-HA-A104R-K/R92/94/97E, and ISRE promoter activity and ISGs expression were examined (methods described above). As a result, as shown in FIG. 2-D, pA104R was able to inhibit ISRE promoter activity in a double luciferase assay, whereas pA104R mutant was able to significantly revert to this inhibition. As shown in FIG. 2-E, the mutant of pA104R in the qPCR experiment result also remarkably reverts the inhibition of pA104R to ISGs expression, and in addition, the mutation of the amino acid site of pA104R protein in the WB result of the double luciferase experiment in FIG. 2-D can be found to not influence the normal expression of the protein. Thus, although the inhibition of innate immunity by pA104R is independent of DNA binding, the amino acid positions (amino acids 69, 72, 92 and 94, 97) associated with DNA binding are closely related to the function of pA104R in immunosuppression, which may be that pA104R inhibits innate immunity by apparent modification, while amino acids 69, 72, 92 and 94, 97 are exactly the key positions for apparent modification.
EXAMPLE 3 immunogenicity of pA104R amino acid site muteins
To verify whether the immunogenicity of the pA104R amino acid site mutein was disruptedBad, construct pA104R amino acid site mutation prokaryotic expression plasmid and carry on prokaryotic expression: sequentially carrying out two-round point mutation on pCAGGS-HA-A104R plasmid by using two pairs of mutation primers to obtain plasmids with mutations of amino acids 69, 72, 92, 94 and 97 of pA104R, amplifying pA104R sequence with mutation of amino acid site by using the primers His-A104R-F, his-A104R-R (table 1) as a template, inserting the primers between restriction enzyme BamHI and enzyme cleavage site of XhoI of PET-30a vector to obtain PET-30a-A104R plasmid, transforming competent cell BL21 (DE 3), inoculating positive bacterial liquid into LB liquid culture medium containing antibiotics according to a ratio of 1:100, placing the LB liquid culture medium at a constant temperature of 37 ℃ for shake culture for 2-3h, and culturing until OD 600 The value is between 0.5 and 0.6, the IPTG with the final concentration of 0.6mM is added, and the mixture is placed in a shaking table at the constant temperature of 16 ℃ for shake culture for 16 to 20 hours. The bacterial solution was centrifuged at 4000g at 4℃for 5min and the cells were resuspended in 1/10 of the volume of the binding buffer. The cells were crushed at 4℃with a low-temperature ultra-high-pressure cell crusher, repeatedly crushed 3 to 5 times, and centrifuged at 8000g at 4℃for 10min, and the supernatant was collected and purified according to the GE nickel affinity chromatography column procedure. Fully emulsifying the purified His-A104R protein with the equal volume of protein and Freund's complete adjuvant, subcutaneously injecting 50 mug of protein into the nape of a 6-week-old female BALB/c mouse at multiple points for one-way injection, performing three-way injection with the same amount of protein emulsified by Freund's incomplete adjuvant after 10 days, and then taking blood from tail vein for indirect ELISA detection: with a coating solution (1.59 g NaCO) 3 ,2.93g NaHCO 3 Adding a proper amount of ddH 2 O was dissolved and 1L) of the diluted antigen was fixed, and the ELISA plate was coated with 100 μl/well and left overnight at 4 ℃. The antigen solution was discarded, washed 3 times with PBST (PBS containing 0.1% Tween-20) and 200. Mu.L of each well was added, and gently swirled at room temperature for 5min. And (5) removing the liquid in the hole as much as possible. 5% skim milk lock in PBS was used for overnight lock at 4deg.C. The blocking solution was discarded, washed 3 times with PBST, and the immunized mouse serum and the blank mouse serum were respectively subjected to gradient dilution with PBS, and added to ELISA reaction plates at a concentration of 100. Mu.L per well, respectively, and incubated at 37℃for 1 hour. Serum was discarded, washed 3 times with PBST, goat anti-mouse HRP-IgG enzyme-labeled secondary antibody diluted 1/8000 was added, 100. Mu.L/well, and incubated at 37℃for 30min. And discarding the enzyme-labeled secondary antibody, washing with PBST for 3 times, and finally sequentially drying the liquid in the hole as much as possible. Adding TMB color development liquidColor development was performed at room temperature for 10min in the dark. Results as shown in fig. 3, the mouse antibody titer can reach 1 after the third immunization: 500000 shows that the immunogenicity of the pA104R protein after amino acid site mutation is not affected. Therefore, the pA104R with the mutation of the immunosuppression related site is a vaccine candidate gene with great potential, and avoids the negative influence caused by the immunosuppression characteristic while stimulating the exertion of the body immunity.
Sequence listing
<110> university of agriculture in China
<120> an African swine fever virus pA104R protein immunosuppression related amino acid site and application thereof
<160> 1
<170> SIPOSequenceListing 1.0
<210> 1
<211> 104
<212> PRT
<213> African swine fever virus
<400> 1
Met Ser Thr Lys Lys Lys Pro Thr Ile Thr Lys Gln Glu Leu Tyr Ser
1 5 10 15
Leu Val Ala Ala Asp Thr Gln Leu Asn Lys Ala Leu Ile Glu Arg Ile
20 25 30
Phe Thr Ser Gln Gln Lys Ile Ile Gln Asn Ala Leu Lys His Asn Gln
35 40 45
Glu Val Ile Ile Pro Pro Gly Ile Lys Phe Thr Val Val Thr Val Lys
50 55 60
Ala Lys Pro Ala Arg Gln Gly His Asn Pro Ala Thr Gly Glu Pro Ile
65 70 75 80
Gln Ile Lys Ala Lys Pro Glu His Lys Ala Val Lys Ile Arg Ala Leu
85 90 95
Lys Pro Val His Asp Met Leu Asn
100
Claims (7)
1. An african swine fever virus pA104R mutein characterized in that: is any one of the following proteins:
protein with the pA104R protein with the 69 th Arg and 72 th His mutated into Asp, glu or Ala;
protein of pA104R, lys at 92 th, arg at 94 th and Lys at 97 th are mutated into Asp, glu or Ala;
protein of pA104R protein with mutation of 69 th Arg, 72 th His, 92 th Lys, 94 th Arg and 97 th Lys to Asp, glu or Ala;
the amino acid sequence of the pA104R protein is shown as SEQ ID NO. 1.
2. An application of an amino acid site related to the immunosuppression of an African swine fever virus pA104R protein as a gene editing site, which is characterized in that: the amino acid site is any one of the following combinations:
arg at 69 th and His at 72 th of pA104R protein are mutated into Asp, glu or Ala;
lys at 92 th position, arg at 94 th position and Lys at 97 th position of pA104R protein are mutated into Asp, glu or Ala;
the Arg at 69 th, his at 72 th, lys at 92 th, arg at 94 th and Lys at 97 th of pA104R protein are mutated into Asp, glu or Ala;
the amino acid sequence of the pA104R protein is shown as SEQ ID NO. 1;
the application is for the purpose of non-disease diagnosis and treatment.
3. An application of an amino acid site related to the immunosuppression of an African swine fever virus pA104R protein as an anti-African swine fever virus target, which is characterized in that: the amino acid site is any one of the following combinations:
arg at 69 th and His at 72 th of pA104R protein are mutated into Asp, glu or Ala;
lys at 92 th position, arg at 94 th position and Lys at 97 th position of pA104R protein are mutated into Asp, glu or Ala;
the Arg at 69 th, his at 72 th, lys at 92 th, arg at 94 th and Lys at 97 th of pA104R protein are mutated into Asp, glu or Ala;
the amino acid sequence of the pA104R protein is shown as SEQ ID NO. 1;
the application is for the purpose of non-disease diagnosis and treatment.
4. Use of the pA104R mutein of claim 1 for the preparation of an african swine fever vaccine.
5. The use according to claim 4, characterized in that: the vaccine comprises ASFV attenuated vaccine, subunit vaccine, DNA vaccine, mRNA vaccine and virus vector vaccine.
6. An african swine fever vaccine, characterized in that: which is capable of expressing the pA104R mutein of claim 1.
7. An anti-african swine fever virus drug, characterized in that: the gene can target an amino acid site related to the immunosuppression of the African swine fever virus pA104R protein, wherein the amino acid site is any one of the following combinations:
arg at 69 th and His at 72 th of pA104R protein are mutated into Asp, glu or Ala;
lys at 92 th position, arg at 94 th position and Lys at 97 th position of pA104R protein are mutated into Asp, glu or Ala;
the Arg at 69 th, his at 72 th, lys at 92 th, arg at 94 th and Lys at 97 th of pA104R protein are mutated into Asp, glu or Ala;
the amino acid sequence of the pA104R protein is shown as SEQ ID NO. 1.
Priority Applications (1)
Application Number | Priority Date | Filing Date | Title |
---|---|---|---|
CN202210721017.0A CN114989266B (en) | 2022-06-16 | 2022-06-16 | African swine fever virus pA104R protein immunosuppression related amino acid site and application thereof |
Applications Claiming Priority (1)
Application Number | Priority Date | Filing Date | Title |
---|---|---|---|
CN202210721017.0A CN114989266B (en) | 2022-06-16 | 2022-06-16 | African swine fever virus pA104R protein immunosuppression related amino acid site and application thereof |
Publications (2)
Publication Number | Publication Date |
---|---|
CN114989266A CN114989266A (en) | 2022-09-02 |
CN114989266B true CN114989266B (en) | 2024-02-13 |
Family
ID=83036850
Family Applications (1)
Application Number | Title | Priority Date | Filing Date |
---|---|---|---|
CN202210721017.0A Active CN114989266B (en) | 2022-06-16 | 2022-06-16 | African swine fever virus pA104R protein immunosuppression related amino acid site and application thereof |
Country Status (1)
Country | Link |
---|---|
CN (1) | CN114989266B (en) |
Families Citing this family (1)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
CN115925887B (en) * | 2022-10-27 | 2024-02-09 | 华中农业大学 | African swine fever virus pA104R protein immunodominant B cell epitope, monoclonal antibody thereof and application |
Citations (7)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
CN102967703A (en) * | 2012-09-06 | 2013-03-13 | 中国动物卫生与流行病学中心 | Biologically safe Africa swine fever antigen multifactorial serum for ELISA diagnosis |
CA3112800A1 (en) * | 2018-09-18 | 2020-03-26 | Stichting Wageningen Research | African swine fever virus vaccine |
CN111304253A (en) * | 2020-05-14 | 2020-06-19 | 苏州世诺生物技术有限公司 | African swine fever virus vaccine, preparation method and application thereof |
CN112057611A (en) * | 2020-09-08 | 2020-12-11 | 中国农业科学院兰州兽医研究所 | Application of African swine fever virus E120R protein as immunosuppressant and construction of immunosuppressive site knockout strain |
WO2021210924A1 (en) * | 2020-04-14 | 2021-10-21 | (주)플럼라인생명과학 | African swine fever vaccine composition |
CN113543801A (en) * | 2019-03-27 | 2021-10-22 | 勃林格殷格翰动物保健有限公司 | Immunogenic composition and vaccine containing African swine fever virus peptide and protein and application thereof |
WO2022012604A1 (en) * | 2020-07-15 | 2022-01-20 | 浙江海隆生物科技有限公司 | Subunit vaccine composition for african swine fever, and preparation therefor and use thereof |
-
2022
- 2022-06-16 CN CN202210721017.0A patent/CN114989266B/en active Active
Patent Citations (7)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
CN102967703A (en) * | 2012-09-06 | 2013-03-13 | 中国动物卫生与流行病学中心 | Biologically safe Africa swine fever antigen multifactorial serum for ELISA diagnosis |
CA3112800A1 (en) * | 2018-09-18 | 2020-03-26 | Stichting Wageningen Research | African swine fever virus vaccine |
CN113543801A (en) * | 2019-03-27 | 2021-10-22 | 勃林格殷格翰动物保健有限公司 | Immunogenic composition and vaccine containing African swine fever virus peptide and protein and application thereof |
WO2021210924A1 (en) * | 2020-04-14 | 2021-10-21 | (주)플럼라인생명과학 | African swine fever vaccine composition |
CN111304253A (en) * | 2020-05-14 | 2020-06-19 | 苏州世诺生物技术有限公司 | African swine fever virus vaccine, preparation method and application thereof |
WO2022012604A1 (en) * | 2020-07-15 | 2022-01-20 | 浙江海隆生物科技有限公司 | Subunit vaccine composition for african swine fever, and preparation therefor and use thereof |
CN112057611A (en) * | 2020-09-08 | 2020-12-11 | 中国农业科学院兰州兽医研究所 | Application of African swine fever virus E120R protein as immunosuppressant and construction of immunosuppressive site knockout strain |
Also Published As
Publication number | Publication date |
---|---|
CN114989266A (en) | 2022-09-02 |
Similar Documents
Publication | Publication Date | Title |
---|---|---|
CN111592602B (en) | Beta coronavirus antigen, preparation method and application thereof | |
CN101918440B (en) | Use of avian cytokines and genetic sequences encoding the avian cytokines | |
CN114989266B (en) | African swine fever virus pA104R protein immunosuppression related amino acid site and application thereof | |
TW201410707A (en) | Canine fusion interferon | |
CN107586322B (en) | Infectious bovine rhinotracheitis virus gD protein epitope polypeptide, inhibitor and monoclonal antibody thereof, and application of infectious bovine rhinotracheitis virus gD protein epitope polypeptide and inhibitor and monoclonal antibody | |
CN106834238B (en) | Key phosphorylation site of influenza A virus temperature sensitivity and application thereof | |
CN110393791B (en) | Anti-infection effect of hnRNPA2B1 and application thereof | |
CN113528549A (en) | DNA molecule for encoding novel coronavirus B.1.351 mutant strain antigen, DNA vaccine and application | |
CN106349391A (en) | HBV specific double-targeted antibody as well as preparation method and application thereof, minicircle DNA containing double-targeted antibody expression box and application of minicircle DNA | |
CN107034201A (en) | Apparent modification enzyme SETD2 antivirus action and its application | |
CN110716035B (en) | Echinococcosis-resistant high-throughput drug screening method based on echinococcosis tubulin as target spot | |
CN112646046B (en) | Multi-epitope fusion protein for preventing pseudomonas aeruginosa infection and coding gene, expression vector and application thereof | |
CN113621598A (en) | Application of calpain-1 in resisting porcine epidemic diarrhea virus infection | |
CN113637695A (en) | Novel coronavirus mRNA vaccine for targeted stimulation of humoral immunity and cellular immunity | |
CN109206519B (en) | Nano antibody of anti-urease B subunit, nucleic acid molecule and application | |
CN109295014B (en) | Atypical classical swine fever virus E2 protein recombinant baculovirus and preparation method and application thereof | |
CN111840529A (en) | Preparation method of Eimeria tenella recombinant polypeptide vaccine VKVQ and application method thereof in chicken coccidiosis resistance | |
Li et al. | Molecular characterization and transcriptional conservation of N-myc-interactor, Nmi, by type I and type II IFNs in mandarin fish Siniperca chuatsi | |
CN112661835B (en) | Preparation method of mink IFN-epsilon mature peptide | |
CN114573667B (en) | Mutant strain DNA vaccine of SARS-CoV-2 virus B.1.1.529 and application thereof | |
CN113355331B (en) | Duck-origin CCCH (common control channel) type zinc finger antiviral protein and application thereof | |
CN117448362A (en) | Recombinant DNA molecule for encoding coronavirus antigen, DNA vaccine and application | |
CN117448354A (en) | Recombinant DNA molecule for encoding coronavirus antigen, DNA vaccine and application | |
US20220257710A1 (en) | Anti-infection effects of hnrnpa2b1 and use thereof | |
CN114805553A (en) | Application of protein ZYG11B in preparation of medicines for promoting enzymatic activity of cGAS |
Legal Events
Date | Code | Title | Description |
---|---|---|---|
PB01 | Publication | ||
PB01 | Publication | ||
SE01 | Entry into force of request for substantive examination | ||
SE01 | Entry into force of request for substantive examination | ||
GR01 | Patent grant | ||
GR01 | Patent grant |