CN114457034A - Pluripotent stem cell derivative for expressing IL-1 blocker and application thereof - Google Patents
Pluripotent stem cell derivative for expressing IL-1 blocker and application thereof Download PDFInfo
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Abstract
The invention discloses a pluripotent stem cell expressing an IL-1 blocker or a derivative thereof and application thereof, wherein the pluripotent stem cell or the derivative thereof comprises at least one of a non-immune compatible pluripotent stem cell expressing the IL-1 blocker or a derivative thereof, an immune compatible pluripotent stem cell expressing the IL-1 blocker or a derivative thereof, and an immune compatible reversible pluripotent stem cell expressing the IL-1 blocker or a derivative thereof. The pluripotent stem cells or the derivatives thereof expressing the IL-1 blocker can be used for inducing iPSCs (induced pluripotent stem cells) or differentiating into MSCs (mesenchymal stem cells) which are low-immunogenicity cells for application, can continuously express the IL-1 blocker in vivo, and is used for treating related diseases with high IL-1 expression or treating rheumatoid arthritis.
Description
Technical Field
The invention belongs to the technical field of genetic engineering, and particularly relates to a pluripotent stem cell expressing an IL-1 blocker or a derivative thereof and application thereof.
Background
Stem cells are "seed" cells with self-renewal ability and differentiation ability into specific functional somatic cells, have the potential to regenerate into various tissues, organs and human bodies, and play a central and irreplaceable role in immune response, aging, tumorigenesis and other important biological activities. Stem cells are mainly classified into: totipotent stem cells (Totipotent stem cells), Pluripotent Stem Cells (PSCs), and adult stem cells (adult stem cells). The typical PSCs mainly include Embryonic Stem Cells (ESCs), Embryonic Germ Cells (EGCs), Embryonic Carcinoma Cells (ECCs), Induced Pluripotent Stem Cells (iPSCs), and the like, and such cells have a very deep and wide application prospect due to their powerful functions and can be restricted to some extent by ethics.
IL-1 producing cells IL-1 is produced primarily by macrophages; in addition, IL-1 is produced by almost all nucleated cells, such as B cells, NK cells, T cells cultured in vitro, keratinocytes, dendritic cells, astrocytes, fibroblasts, neutrophils, endothelial cells, and smooth muscle cells. Normally only skin, sweat and urine contain a certain amount of IL-1, and most cells synthesize and secrete IL-1 after stimulation by foreign antigens or mitogens.
Interleukin IL-1 family members are central mediators of innate immunity and inflammation, and pleiotropic cytokines with a variety of local and systemic effects play a key role in the biology of multiple inflammatory diseases. Most of the IL-1 family cytokines have proinflammatory activity (IL-1 alpha, IL-1 beta, 1L-33, IL-36 alpha, beta, gamma), and the IL-1 family cytokines play a role in proinflammatory action, regulation of transcription level, precursor enzyme treatment, release of soluble antagonists and the like by binding to corresponding receptors. IL-1 family factors are also involved in the pathogenesis of chronic diseases, including inflammatory bowel disease, rheumatoid arthritis, and various autoimmune and autoinflammatory diseases.
Therefore, it is of great interest to develop a pluripotent stem cell or a derivative thereof that can express an IL-1 blocker in humans.
However, the conception or establishment of the autologous iPSCs cell bank and the immune matched PSCs cell bank requires great financial, material and manpower. The molecular immunological basis for allogeneic recipient organ, tissue or cell transplantation is based primarily on the matching of the classical major histocompatibility complexes MHC-I and MHC-II (human HLA-I, HLA-II). By 6 months 2019, over 20000 HLA system alleles have been identified and named, and only 5000 allele factors of classical HLA-A, B, C are respectively exceeded, and various possible random combinations of these classical HLA-I/II alleles will be astronomical numbers, and as the number of combinations found for new alleles increases, there is a great obstacle to tissue matching and donor selection before organ, tissue and cell transplantation, and also great difficulty in constructing a PSCs cell library covering the immune match of the human population.
Thus, the construction of allogeneic immune-compatible, universal PSCs is imminent. In recent years, a plurality of reports have been provided that the deletion expression of genes on the cell surfaces of HLA-I and HLA-II or the genes thereof is realized by knocking out genes such as B2M, CIITA and the like, so that the cells have immune tolerance or escape T/B cell specific immune response, and universal PSCs with immune compatibility are generated, thereby laying an important foundation for the application of wider universal PSCs source cells, tissues and organs. Also, cells have been reported to overexpress CTLA4-Ig, PD-L1 and thereby inhibit allogeneic immune rejection. Recently, it has been reported that when B2M and CIITA are knocked out, CD47 is knocked in, so that cells obtain escape specific immune response, and have immune tolerance or escape natural immune response of cells such as NK cells, so that the cells have more comprehensive and stronger immune compatibility characteristics. However, these approaches are either not fully immune compatible, and still allow for immunological rejection of the allografts by other routes; or completely eliminate the allogeneic immune rejection response, but simultaneously make the cells of the donor-derived transplant lose the antigen presenting capability, which brings great risk of diseases such as tumorigenicity and virus infection to the recipient.
Therefore, it is also reported that, B2M is not directly knocked out, HLA-A, HLA-B is knocked out or CIITA is knocked out together, HLA-C is reserved, 12 HLA-C immune matching antigens covering more than 90% of people are constructed, and therefore the purpose that transplanted cells still have a certain degree of antigen presenting function is achieved, and meanwhile, the innate immune response of NK cells can be inhibited through HLA-C. However, in the cells, the antigen type presented by HLA-I antigen is reduced by more than two thirds, the integrity of the presented antigen is reduced irreversibly, the presenting of various tumor, virus and other disease antigens has great bias, the risk of diseases such as tumor and virus infection is still kept to a certain extent, and the pathogenic risk is higher under the condition that CIITA is knocked out simultaneously; secondly, 12 high-frequency immune match HLA-C antigen species are very different, and the part of the area can only account for 70 percent by verification and calculation, while the HLA data of large sample size which is not authoritative currently in China, Indian and other big countries is displayed, so that the prepared general PSCs are still subjected to huge match vacancy tests; thirdly, the method can go through repeated gene editing for a plurality of times, at least two rounds of single cell isolation culture meters are needed according to each gene editing, the whole process needs at least more than six rounds of single cell isolation culture, and the processes are inevitable and cause various unpredictable mutations of cells due to multiple times of gene editing off-target or unstable chromatin or due to passage proliferation of a large number of single cells, thereby further inducing various problems of carcinogenesis, metabolic diseases and the like. It follows that such immuno-compatible schemes are also a matter of convenience in the "transition period", and many problems remain that are not better solved.
In addition, inducing killing of the suicide gene after donor tissue and cell disease has been induced, which results in serious tissue necrosis, cytokine storm and other unpredictable disease risk problems, and it is a big problem that proper donor cells, tissues and organs do not exist after the cell death of the design.
Disclosure of Invention
In a first aspect, the present invention provides a pluripotent stem cell or a derivative thereof.
The second aspect of the present invention is to provide the use of the pluripotent stem cells or derivatives thereof in preparing a medicament for treating rheumatoid arthritis.
In a third aspect, the invention provides a preparation comprising the pluripotent stem cells or derivatives thereof.
The technical scheme adopted by the invention is as follows:
in a first aspect of the invention, there is provided a pluripotent stem cell or a derivative thereof comprising an expression sequence of an IL-1 blocker, wherein the IL-1 blocker is an IL-1 receptor antagonist and/or an IL-1 antibody;
preferably, the expression sequence of the IL-1 blocker is inserted in the genome of the pluripotent stem cell or the derivative thereof.
More preferably, the expression sequence of the IL-1 blocker is inserted into a safe site of the genome of the pluripotent stem cell or the derivative thereof.
Further preferably, the genomic safe site comprises one or more of AAVS1 safe site, eGSH safe site, H11 safe site.
In a second aspect of the invention, there is provided a pluripotent stem cell or a derivative thereof comprising an expression sequence of an IL-1 blocker, wherein the IL-1 blocker is an IL-1 receptor antagonist and/or an IL-1 antibody;
the B2M gene and/or CIITA gene of the genome of the pluripotent stem cell or the derivative thereof is knocked out.
Preferably, the expression sequence of the IL-1 blocker is inserted in the genome of the pluripotent stem cell or the derivative thereof.
More preferably, the expression sequence of the IL-1 blocker is inserted into a safe site of the genome of the pluripotent stem cell or the derivative thereof.
Further preferably, the genomic safe site comprises one or more of AAVS1 safe site, eGSH safe site, H11 safe site.
In a third aspect of the invention, there is provided a pluripotent stem cell or a derivative thereof, comprising an expression sequence of an IL-1 blocker, wherein the IL-1 blocker is an IL-1 receptor antagonist and/or an IL-1 antibody;
the pluripotent stem cells or the derivatives thereof also comprise an immune compatible molecule expression sequence, and the immune compatible molecule is used for regulating and controlling the expression of genes related to immune response in the pluripotent stem cells or the derivatives thereof.
Preferably, the expression sequence of the IL-1 blocker, the expression sequence of the immune compatible molecule are inserted in the genome of the pluripotent stem cell or the derivative thereof.
More preferably, the expression sequence of the IL-1 blocker, the expression sequence of the immune compatible molecule are inserted in a safe site of the genome of the pluripotent stem cell or the derivative thereof.
Further preferably, the genomic safe site comprises one or more of AAVS1 safe site, eGSH safe site, H11 safe site.
In a fourth aspect of the invention, there is provided a pluripotent stem cell or a derivative thereof, comprising an expression sequence of an IL-1 blocker, wherein the IL-1 blocker is an IL-1 receptor antagonist and/or an IL-1 antibody;
the pluripotent stem cells or the derivatives thereof also comprise an immune compatible molecule expression sequence, and the immune compatible molecule is used for regulating and controlling the expression of genes related to immune response in the pluripotent stem cells or the derivatives thereof;
the pluripotent stem cell or the derivative thereof further comprises an inducible gene expression system.
Preferably, the expression sequence of the IL-1 blocker, the expression sequence of the immune-compatible molecule and the inducible gene expression system are inserted in the genome of the pluripotent stem cell or the derivative thereof;
more preferably, the expression sequence of the IL-1 blocker, the expression sequence of the immune compatible molecule and the inducible gene expression system are inserted into a safe site of the genome of the pluripotent stem cell or the derivative thereof.
Further preferably, the genomic safe site comprises one or more of AAVS1 safe site, eGSH safe site, H11 safe site.
The pluripotent stem cell or derivative thereof according to the third or fourth aspect of the invention, further wherein the immune-compatible molecule comprises one or more of:
(I) immune tolerance-related genes including CD47 or HLA-G;
(II) HLA-C molecules comprising HLA-C alleles in a proportion of more than 90% in total in the population, or fusion protein genes consisting of more than 90% of HLA-C alleles and B2M;
(III) shRNA and/or shRNA-miR targeting the gene associated with the immune response.
The pluripotent stem cell or the derivative thereof according to the third or fourth aspect of the present invention, further wherein the gene associated with an immune response comprises:
major histocompatibility complex genes including at least one of HLA-A, HLA-B, HLA-C, HLA-DRA, HLA-DRB1, HLA-DRB3, HLA-DRB4, HLA-DRB5, HLA-DQA1, HLA-DQB1, HLA-DPA1, and HLA-DPB 1;
(II) major histocompatibility complex related genes comprising at least one of B2M and CIITA.
The target sequence of the shRNA and/or shRNA-miR targeting B2M is selected from one of SEQ ID NO. 6-SEQ ID NO. 8;
the target sequence of the shRNA and/or shRNA-miR of the targeting CIITA is selected from one of SEQ ID NO. 9-SEQ ID NO. 18;
the target sequence of the shRNA and/or shRNA-miR of the target HLA-A is selected from one of SEQ ID NO. 19-SEQ ID NO. 21;
the target sequence of the shRNA and/or shRNA-miR of the target HLA-B is selected from one of SEQ ID NO. 22-SEQ ID NO. 27;
the target sequence of the target HLA-C shRNA and/or shRNA-miR is selected from one of SEQ ID NO. 28-SEQ ID NO. 33;
the target sequence of the shRNA and/or shRNA-miR targeting the HLA-DRA is selected from one of SEQ ID NO. 34-SEQ ID NO. 43;
the target sequence of the shRNA and/or shRNA-miR targeting HLA-DRB1 is selected from one of SEQ ID NO. 44-SEQ ID NO. 48;
the target sequence of the shRNA and/or shRNA-miR targeting HLA-DRB3 is selected from one of SEQ ID NO. 49-SEQ ID NO. 50;
the target sequence of the shRNA and/or shRNA-miR of the target HLA-DRB4 is selected from one of SEQ ID NO. 51-SEQ ID NO. 60;
the target sequence of the shRNA and/or shRNA-miR of the target HLA-DRB5 is selected from one of SEQ ID NO. 61-SEQ ID NO. 69;
the target sequence of the shRNA and/or shRNA-miR of the target HLA-DQA1 is selected from one of SEQ ID NO. 70-SEQ ID NO. 76;
the target sequence of the shRNA and/or shRNA-miR of the target HLA-DQB1 is selected from one of SEQ ID NO. 77-SEQ ID NO. 86;
the target sequence of the shRNA and/or shRNA-miR of the target HLA-DPA1 is selected from one of SEQ ID NO. 87-SEQ ID NO. 96;
the target sequence of the shRNA and/or shRNA-miR of the target HLA-DPB1 is selected from one of SEQ ID NO. 97-SEQ ID NO. 106.
The pluripotent stem cell or the derivative thereof according to the third or fourth aspect of the present invention, wherein at least one of an shRNA processing complex-related gene, an miRNA processing complex-related gene, and an anti-interferon effector molecule is further introduced into the genome of the pluripotent stem cell or the derivative thereof.
Preferably, the shRNA processing complex related gene and the miRNA processing complex related gene comprise at least one of Drosha, Ago1, Ago2, Dicer1, Exportin-5, TRBP (TARBP2), PACT (PRKRA) and DGCR 8;
the anti-interferon effector molecule is preferably shRNA and/or shRNA-miR targeting at least one of PKR, 2-5As, IRF-3 and IRF-7.
The target sequence of the shRNA and/or shRNA-miR of the target PKR is selected from one of SEQ ID NO. 107-SEQ ID NO. 116;
the target sequence of the shRNA and/or shRNA-miR targeting 2-5As is selected from one of SEQ ID NO. 117-SEQ ID NO. 146;
the target sequence of the shRNA and/or shRNA-miR of the targeted IRF-3 is selected from one of SEQ ID NO. 147-SEQ ID NO. 156;
the target sequence of the shRNA and/or shRNA-miR targeting the IRF-7 is selected from one of SEQ ID NO. 157-SEQ ID NO. 166.
In the pluripotent stem cell or the derivative thereof according to the third or fourth aspect of the invention, further, the shRNA expression framework: the gene sequence sequentially comprises an shRNA target sequence, a stem-loop sequence, a reverse complementary sequence of the shRNA target sequence and Poly T from 5 'to 3';
wherein the shRNA target sequence, the stem-loop sequence and the reverse complementary sequence of the shRNA target sequence form a hairpin structure;
poly T is a transcription terminator of RNA polymerase III;
shRNA-miR expression framework: replacing a target sequence in the microRNA-30 or microRNA-155 with a shRNA-miR target sequence to obtain the target sequence.
More preferably, the length of the stem-loop sequence in the shRNA expression frame is 3-9 bases; the poly T is 5-6 bases in length.
The pluripotent stem cell or the derivative thereof according to the first to fourth aspects of the present invention, further comprising an embryonic stem cell, an embryonic germ cell, an embryonic cancer cell, or an induced pluripotent stem cell.
The pluripotent stem cell or the derivative thereof according to the first to fourth aspects of the present invention, further comprising an adult stem cell, each germ layer cell or tissue into which the pluripotent stem cell is differentiated;
the adult stem cells include mesenchymal stem cells or neural stem cells.
The pluripotent stem cell or the derivative thereof according to the first to fourth aspects of the present invention, further wherein the heavy chain and the light chain of the IL-1 antibody:
(I) the heavy chain sequence is shown as SEQ ID NO.1, and the light chain sequence is shown as SEQ ID NO. 2;
or (II) the heavy chain sequence is shown as SEQ ID NO.3, and the light chain sequence is shown as SEQ ID NO. 4.
It will be appreciated by those skilled in the art that the objects of the invention can be achieved using other IL-1 antibody expression sequences as well.
The pluripotent stem cell or the derivative thereof according to the first to fourth aspects of the present invention, wherein the IL-1 receptor antagonist is IL-1 ra.
It will be appreciated by those skilled in the art that the objects of the invention are equally achieved using other expression sequences for IL-1 receptor antagonists.
In a fifth aspect of the present invention, there is provided a use of the pluripotent stem cells or derivatives thereof according to any one of the first to fourth aspects of the present invention in the preparation of a medicament for the treatment of rheumatoid arthritis.
In a sixth aspect of the invention, there is provided a formulation comprising a pluripotent stem cell or a derivative thereof according to any one of the first to fourth aspects.
The invention has the beneficial effects that:
the invention provides a pluripotent stem cell expressing an IL-1 blocker or a derivative thereof, which can be used for inducing iPSCs (induced pluripotent stem cells) or differentiating into MSCs (mesenchymal stem cells) which are low-immunogenicity cells for application by autologous cells, can continuously express the IL-1 blocker in vivo and is used for treating IL-1 high-expression related diseases or rheumatoid arthritis.
The invention also provides an immune compatible pluripotent stem cell or a derivative thereof for expressing the IL-1 blocker, wherein B2M and CIITA genes in the pluripotent stem cell or the derivative thereof are knocked out, or an immune compatible molecule expression sequence is introduced into the genome of the pluripotent stem cell or the derivative thereof, so that the immunogenicity of the pluripotent stem cell or the derivative thereof is low, and when the pluripotent stem cell or the derivative thereof is transplanted into a recipient, the problem of allogeneic immune rejection between a donor cell and the recipient can be overcome, so that the donor cell can continuously express the IL-1 blocker in the recipient for a long time.
The invention also provides an inducible gene expression system and an immune compatible molecule expression sequence which are introduced into the genome of the immune compatible reversible pluripotent stem cell or the derivative thereof for expressing the IL-1 blocker. The inducible gene expression system is controlled by an exogenous inducer, and the opening and closing of the inducible gene expression system are controlled by adjusting the addition amount, the continuous action time and the type of the exogenous inducer, so that the expression quantity of the epidemic compatible molecular expression sequence is controlled. While the immune-compatible molecule may regulate the expression of genes associated with an immune response in the pluripotent stem cell or derivative thereof. When the immune compatible molecule is normally expressed, the expression of genes related to the immune response in the pluripotent stem cell or the derivative thereof is suppressed or overexpressed, and the allogeneic immune rejection response between the donor cell and the recipient can be eliminated or reduced, so that the donor cell can continuously express the IL-1 blocker in the recipient for a long time. When donor cells are diseased, the expression of immune compatible molecules can be closed through induction of an exogenous inducer, so that HLA class I molecules are reversibly re-expressed on the surfaces of the donor cells, the antigen presenting capability of the donor cells is recovered, and the diseased cells can be eliminated by a receptor, so that the clinical safety of the general pluripotent stem cells or the derivatives thereof is improved, and the value of the general pluripotent stem cells or the derivatives thereof in clinical application is greatly expanded.
In addition, the addition amount and the lasting action time of the exogenous inducer can be adjusted to ensure that the transplant gradually expresses low-concentration HLA molecules to stimulate the receptor, so that the receptor gradually generates tolerance on the transplant, and finally stable tolerance is achieved. At the moment, even if mismatched HLA class I molecules are expressed on the surface of the graft cells, the HLA class I molecules can be compatible with a receptor immune system, so that after the expression of the immune compatible molecules in the graft cells is induced to be closed, the receptor immune system can re-identify the cells with gene mutation presented by the HLA class I molecules in the graft cells on one hand, and eliminate diseased cells; on the other hand, the non-mutated part is not cleared by the recipient immune system due to the allogeneic HLA class i molecule tolerance produced by training with the above mentioned inducers. Thus, the recipient immune system can only eliminate the graft with harmful mutation, the graft with normal function is kept, and when the harmful graft is eliminated, the mode of HLA class I molecule silencing on the cell surface of the graft can be transferred. The graft tolerance program mediated by the exogenous inducer can also be used to implant a graft that does not induce or otherwise induce the turning on or off of the surface expression of HLA class i molecules after the recipient has become fully tolerant.
Drawings
FIG. 1AAVS1 KI Vector (shRNA, constitutive) plasmid map.
FIG. 2AAVS1 KI Vector (shRNA, inducible) plasmid map.
FIG. 3AAVS1 KI Vector (shRNA-miR, constitutive) plasmid map.
FIG. 4AAVS1 KI Vector (shRNA-miR, inducible) plasmid map.
FIG. 5sgRNA clone B2M-1 plasmid map.
FIG. 6sgRNA clone B2M-2 plasmid map.
FIG. 7sgRNA clone CIITA-1 plasmid map.
FIG. 8 plasmid map of sgRNA clone CIITA-2.
Figure 9Cas9(D10A) plasmid map.
FIG. 10sgRNA Clone AAVS1-1 plasmid map.
FIG. 11sgRNA Clone AAVS1-2 plasmid map.
Detailed Description
The present invention will be described in further detail with reference to the following specific embodiments and accompanying drawings. It should be understood that these examples are for illustrative purposes only and are not intended to limit the scope of the present invention.
Experimental procedures without specific conditions noted in the following examples, generally followed by conventional conditions, such as Sambrook et al, molecular cloning: the conditions described in the Laboratory Manual (New York: Cold Spring Harbor Laboratory Press, 1989), or according to the manufacturer's recommendations. The various chemicals used in the examples are commercially available.
1 Experimental materials and methods
1.1IL-1 blockers
IL-1 antibody can be selected from IL-1 alpha or IL-1 beta. Wherein, the Heavy Chain (HC) sequence of the IL-1 alpha is shown as SEQ ID NO.1, and the Light Chain (LC) sequence is shown as SEQ ID NO. 2; the Heavy Chain (HC) sequence of IL-1 beta is shown in SEQ ID NO.3, and the Light Chain (LC) sequence is shown in SEQ ID NO. 4.
CAGGTGCAGCTGGTGGAGAGCGGCGGCGGCGTGGTGCAGCCCGGCAGGAGCCTGAGGCTGAGCTGCACCGCCAGCGGCTTCACCTTCAGCATGTTCGGCGTGCACTGGGTGAGGCAGGCCCCCGGCAAGGGCCTGGAGTGGGTGGCCGCCGTGAGCTACGACGGCAGCAACAAGTACTACGCCGAGAGCGTGAAGGGCAGGTTCACCATCAGCAGGGACAACAGCAAGAACATCCTGTTCCTGCAGATGGACAGCCTGAGGCTGGAGGACACCGCCGTGTACTACTGCGCCAGGGGCAGGCCCAAGGTGGTGATCCCCGCCCCCCTGGCCCACTGGGGCCAGGGCACCCTGGTGACCTTCAGCAGCGCCAGCACCAAGGGCCCCAGCGTGTTCCCCCTGGCCCCCAGCAGCAAGAGCACCAGCGGCGGCACCGCCGCCCTGGGCTGCCTGGTGAAGGACTACTTCCCCGAGCCCGTGACCGTGAGCTGGAACAGCGGCGCCCTGACCAGCGGCGTGCACACCTTCCCCGCCGTGCTGCAGAGCAGCGGCCTGTACAGCCTGAGCAGCGTGGTGACCGTGCCCAGCAGCAGCCTGGGCACCCAGACCTACATCTGCAACGTGAACCACAAGCCCAGCAACACCAAGGTGGACAAGAGGGTGGAGCCCAAGAGCTGCGACAAGACCCACACCTGCCCCCCCTGCCCCGCCCCCGAGCTGCTGGGCGGCCCCAGCGTGTTCCTGTTCCCCCCCAAGCCCAAGGACACCCTGATGATCAGCAGGACCCCCGAGGTGACCTGCGTGGTGGTGGACGTGAGCCACGAGGACCCCGAGGTGAAGTTCAACTGGTACGTGGACGGCGTGGAGGTGCACAACGCCAAGACCAAGCCCAGGGAGGAGCAGTACAACAGCACCTACAGGGTGGTGAGCGTGCTGACCGTGCTGCACCAGGACTGGCTGAACGGCAAGGAGTACAAGTGCAAGGTGAGCAACAAGGCCCTGCCCGCCCCCATCGAGAAGACCATCAGCAAGGCCAAGGGCCAGCCCAGGGAGCCCCAGGTGTACACCCTGCCCCCCAGCAGGGAGGAGATGACCAAGAACCAGGTGAGCCTGACCTGCCTGGTGAAGGGCTTCTACCCCAGCGACATCGCCGTGGAGTGGGAGAGCAACGGCCAGCCCGAGAACAACTACAAGACCACCCCCCCCGTGCTGGACAGCGACGGCAGCTTCTTCCTGTACAGCAAGCTGACCGTGGACAAGAGCAGGTGGCAGCAGGGCAACGTGTTCAGCTGCAGCGTGATGCACGAGGCCCTGCACAACCACTACACCCAGAAGAGCCTGAGCCTGAGCCCCGGCAAG(SEQ ID NO.1)。
GACATCCAGATGACCCAGAGCCCCAGCAGCGTGAGCGCCAGCGTGGGCGACAGGGTGACCATCACCTGCAGGGCCAGCCAGGGCATCAGCAGCTGGCTGGCCTGGTACCAGCAGAAGCCCGGCAAGGCCCCCAAGCTGCTGATCTACGAGGCCAGCAACCTGGAGACCGGCGTGCCCAGCAGGTTCAGCGGCAGCGGCAGCGGCAGCGACTTCACCCTGACCATCAGCAGCCTGCAGCCCGAGGACTTCGCCACCTACTACTGCCAGCAGACCAGCAGCTTCCTGCTGAGCTTCGGCGGCGGCACCAAGGTGGAGCACAAGAGGACCGTGGCCGCCCCCAGCGTGTTCATCTTCCCCCCCAGCGACGAGCAGCTGAAGAGCGGCACCGCCAGCGTGGTGTGCCTGCTGAACAACTTCTACCCCAGGGAGGCCAAGGTGCAGTGGAAGGTGGACAACGCCCTGCAGAGCGGCAACAGCCAGGAGAGCGTGACCGAGCAGGACAGCAAGGACAGCACCTACAGCCTGAGCAGCACCCTGACCCTGAGCAAGGCCGACTACGAGAAGCACAAGGTGTACGCCTGCGAGGTGACCCACCAGGGCCTGAGCAGCCCCGTGACCAAGAGCTTCAACAGGGGCGAGTGC(SEQ ID NO.2)。
CAGGTGCAGCTGCAGGAGAGCGGCCCCGGCCTGGTGAAGCCCAGCCAGACCCTGAGCCTGACCTGCAGCTTCAGCGGCTTCAGCCTGAGCACCAGCGGCATGGGCGTGGGCTGGATCAGGCAGCCCAGCGGCAAGGGCCTGGAGTGGCTGGCCCACATCTGGTGGGACGGCGACGAGAGCTACAACCCCAGCCTGAAGAGCAGGCTGACCATCAGCAAGGACACCAGCAAGAACCAGGTGAGCCTGAAGATCACCAGCGTGACCGCCGCCGACACCGCCGTGTACTTCTGCGCCAGGAACAGGTACGACCCCCCCTGGTTCGTGGACTGGGGCCAGGGCACCCTGGTGACCGTGAGCAGCGCCAGCACCAAGGGCCCCAGCGTGTTCCCCCTGGCCCCCTGCAGCAGGAGCACCAGCGAGAGCACCGCCGCCCTGGGCTGCCTGGTGAAGGACTACTTCCCCGAGCCCGTGACCGTGAGCTGGAACAGCGGCGCCCTGACCAGCGGCGTGCACACCTTCCCCGCCGTGCTGCAGAGCAGCGGCCTGTACAGCCTGAGCAGCGTGGTGACCGTGACCAGCAGCAACTTCGGCACCCAGACCTACACCTGCAACGTGGACCACAAGCCCAGCAACACCAAGGTGGACAAGACCGTGGAGAGGAAGTGCTGCGTGGAGTGCCCCCCCTGCCCCGCCCCCCCCGTGGCCGGCCCCAGCGTGTTCCTGTTCCCCCCCAAGCCCAAGGACACCCTGATGATCAGCAGGACCCCCGAGGTGACCTGCGTGGTGGTGGACGTGAGCCACGAGGACCCCGAGGTGCAGTTCAACTGGTACGTGGACGGCATGGAGGTGCACAACGCCAAGACCAAGCCCAGGGAGGAGCAGTTCAACAGCACCTTCAGGGTGGTGAGCGTGCTGACCGTGGTGCACCAGGACTGGCTGAACGGCAAGGAGTACAAGTGCAAGGTGAGCAACAAGGGCCTGCCCGCCCCCATCGAGAAGACCATCAGCAAGACCAAGGGCCAGCCCAGGGAGCCCCAGGTGTACACCCTGCCCCCCAGCAGGGAGGAGATGACCAAGAACCAGGTGAGCCTGACCTGCCTGGTGAAGGGCTTCTACCCCAGCGACATCGCCGTGGAGTGGGAGAGCAACGGCCAGCCCGAGAACAACTACAAGACCACCCCCCCCATGCTGGACAGCGACGGCAGCTTCTTCCTGTACAGCAAGCTGACCGTGGACAAGAGCAGGTGGCAGCAGGGCAACGTGTTCAGCTGCAGCGTGATGCACGAGGCCCTGCACAACCACTACACCCAGAAGAGCCTGAGCCTGAGCCCCGGC(SEQ ID NO.3)。
GACATCCAGATGACCCAGAGCACCAGCAGCCTGAGCGCCAGCGTGGGCGACAGGGTGACCATCACCTGCAGGGCCAGCCAGGACATCAGCAACTACCTGAGCTGGTACCAGCAGAAGCCCGGCAAGGCCGTGAAGCTGCTGATCTACTACACCAGCAAGCTGCACAGCGGCGTGCCCAGCAGGTTCAGCGGCAGCGGCAGCGGCACCGACTACACCCTGACCATCAGCAGCCTGCAGCAGGAGGACTTCGCCACCTACTTCTGCCTGCAGGGCAAGATGCTGCCCTGGACCTTCGGCCAGGGCACCAAGCTGGAGATCAAGAGGACCGTGGCCGCCCCCAGCGTGTTCATCTTCCCCCCCAGCGACGAGCAGCTGAAGAGCGGCACCGCCAGCGTGGTGTGCCTGCTGAACAACTTCTACCCCAGGGAGGCCAAGGTGCAGTGGAAGGTGGACAACGCCCTGCAGAGCGGCAACAGCCAGGAGAGCGTGACCGAGCAGGACAGCAAGGACAGCACCTACAGCCTGAGCAGCACCCTGACCCTGAGCAAGGCCGACTACGAGAAGCACAAGGTGTACGCCTGCGAGGTGACCCACCAGGGCCTGAGCAGCCCCGTGACCAAGAGCTTCAACAGGGGCGAGTGC(SEQ ID NO.4)。
IL-1 receptor antagonists: such as IL-1RA, the sequence is shown in SEQ ID NO. 5:
ATGAGGCCCAGCGGCAGGAAGAGCAGCAAGATGCAGGCCTTCAGGATCTGGGACGTGAACCAGAAGACCTTCTACCTGAGGAACAACCAGCTGGTGGCCGGCTACCTGCAGGGCCCCAACGTGAACCTGGAGGAGAAGATCGACGTGGTGCCCATCGAGCCCCACGCCCTGTTCCTGGGCATCCACGGCGGCAAGATGTGCCTGAGCTGCGTGAAGAGCGGCGACGAGACCAGGCTGCAGCTGGAGGCCGTGAACATCACCGACCTGAGCGAGAACAGGAAGCAGGACAAGAGGTTCGCCTTCATCAGGAGCGACAGCGGCCCCACCACCAGCTTCGAGAGCGCCGCCTGCCCCGGCTGGTTCCTGTGCACCGCCATGGAGGCCGACCAGCCCGTGAGCCTGACCAACATGCCCGACGAGGGCGTGATGGTGACCAAGTTCTACTTCCAGGAGGACGAG(SEQ ID NO.5)。
it will be appreciated by those skilled in the art that the objects of the invention may be equally achieved using other IL-1 antibody expression sequences or IL-1 receptor antagonist expression sequences.
1.2 pluripotent Stem cells or derivatives thereof
The pluripotent stem cells can be selected from Embryonic Stem Cells (ESCs), Induced Pluripotent Stem Cells (iPSCs) and other forms of pluripotent stem cells, such as hPSCs-MSCs, NSCs, EBs cells. Wherein:
ESCs: HN4 cells were selected and purchased from Shanghai department of sciences.
And (2) iPSCs: using the third generation highly efficient and safe epismal-iPSCs induction system (6F/BM1-4C), pE3.1-OG- -KS and pE3.1-L-Myc- -hmiR302 cluster which are built by us are transferred into somatic cells through electricity, RM1 is cultured for 2 days, BioCISO-BM1 containing 2uM Parnate is cultured for 2 days, BioCISO-BM1 containing 2uM Parnate, 0.25mM sodium butyrate, 3uM CHIR99021 and 0.5uM PD 54032901 is cultured for 2 days, iPSCs clones can be picked up after being cultured for about 17 days by using a dry cell culture medium BioCISO, and the picked iPSCs clones are purified, digested and passaged to obtain stable iPSCs. The specific construction method is as follows: stem Cell Res ther.2017nov 2; 8(1):245.
hPSCs-MSCs: iPSCs are cultured for 25 days by using a stem cell culture medium (BioCISO containing 10uM TGF beta inhibitor SB431542), during which digestion passage (2mg/mL Dispase digestion) is carried out at 80-90 confluence, passage is carried out at 1:3 into a Matrigel coated culture plate, then ESC-MSC culture medium (knockkockout DMEM culture medium containing 10% KSR, NEAA, diabody, glutamine, beta-mercaptoethanol, 10ng/mL bFGF and SB-431542) is cultured, fluid is changed every day, passage is carried out at 80-90 confluence (passage is carried out at 1: 3), and continuous culture is carried out for 20 days. The specific construction method is as follows: proc Natl Acad Sci U S A.2015; 112(2):530-535.
NSCs: iPSCs are cultured for 14 days by using an induction medium (a knockout DMEM medium containing 10% KSR, a TGF-beta inhibitor and a BMP4 inhibitor), rose annular nerve cells are picked to a low-adhesion culture plate for culture, the culture medium is cultured by using DMEM/F12 (containing 1% N2 and Invitrogen) and Neurobasal medium (containing 2% B27 and Invitrogen) in a ratio of 1:1 and also contains 20ng/ml bFGF and 20ng/ml EGF, and digestion is carried out by using Accutase for digestion and passage. The specific construction method is as follows: FASEB J.2014; 28(11):4642-4656.
EBs cells: and digesting iPSCs with the confluence of 95% for 6min by using a BioC-PDE1, scraping the cells into blocks by using a mechanical scraping method, settling and reducing cell masses, transferring the settled cell masses into a low-adhesion culture plate, culturing for 7 days by using a BioCISO-EB1, and changing the liquid every other day. After 7 days, the cells were transferred to a Matrigel-coated plate and adherent culture was continued using BioCISO, and Embryoid Bodies (EBs) having an inner, middle and outer mesoderm structure were obtained after 7 days. The specific construction method is as follows: stem Cell Res ther.2017nov 2; 8(1):245.
The pluripotent stem cell derivative also includes adult stem cells, each germ layer cell or tissue, organ into which the pluripotent stem cells are differentiated; the adult stem cells include mesenchymal stem cells or neural stem cells.
1.3 genomic safety sites
As a more preferred approach, to ensure stable expression of the knock-in gene/expression construct, the gene/expression construct may be knocked into a genomic safety site, which may be selected from the AAVS1 safety site, the eGSH safety site, or other safety sites:
(1) AAVS1 safety site
The AAVS1 site (the alias "PPP 1R2C site") is located on chromosome 19 of the human genome and is a verified "safe harbor" site that ensures the desired function of the transferred DNA fragment. The site is an open chromosome structure, can ensure that the transgene can be normally transcribed, and has no known side effect on cells when the exogenous target segment is inserted into the site.
(2) eGSH safe site
The eGSH safe site is located on chromosome 1 of the human genome and is another 'safe harbor' site which is verified by a paper and can ensure the expected function of the transferred DNA fragment.
(3) Other safety sites
The H11 safe site (also called Hipp11) is located on the number 22 chromosome of a human, is a site between two genes Eif4enif1 and Drg1, is discovered and named in 2010 by Simon Hippenmeyer, and has little risk of influencing endogenous gene expression after the insertion of a foreign gene because the H11 site is located between the two genes. The H11 site was verified to be a safe transcription activation region between genes, a new "safe harbor" site outside the AAVS1, eGSH sites.
1.4 inducible Gene expression System
The inducible gene expression system is selected from: tet-Off system or dimer-Off expression system:
(1) tet-Off system
In the absence of tetracycline, the tTA protein continues to act on the tet promoter, resulting in sustained gene expression. This system is very useful in situations where it is desirable to maintain the transgene in a sustained expression state. When tetracycline is added, the tetracycline can change the structure of the tTA protein, so that the tTA protein cannot be combined with a promoter, and the expression level of a gene driven by the tTA protein is reduced. To keep the system in an "off" state, the tetracycline must be added continuously.
Knocking the sequence of the tet-Off system and one or more immune compatible molecules into the genome safe site of the pluripotent stem cell, and precisely turning on or Off the expression of the immune compatible molecules by the addition or non-addition of tetracycline, thereby reversibly regulating the expression of major histocompatibility complex related genes in the pluripotent stem cell or the derivative thereof.
(2) Dimer-switched off expression system
Dimer-mediated gene expression regulation system: there are many ways of chemically regulating transcription of target genes, most commonly regulated using allosteric modulators that influence the activity of transcription factors. One such method is the use of dimerizing inducers or dimers to recombine active transcription factors on inactive fusion proteins. The most commonly used system is rapamycin (rapamydn), a natural product, or an analog that is biologically inactive, as the drug for dimerization. The rapamycin (or analog) sibling protein FKBP12 (the protein to which FKBP binds to FK 506) and a large serine-threonine protein kinase, known as FRAP [ FRBP-rapamycin associated protein, mTOR (mammalian target of rapamycin), have high affinity and function to bind to both proteins, thus bringing them together as a heterologous dimer. To regulate transcription of a target gene, a DNA binding domain is fused to one or more FKBP domains and a transcription repressing domain is fused to amino acid position 93 of FRAP, designated FRB, which is sufficient to bind the FKBP-rapamycin complex. Dimerization of these two fusion proteins can only occur in the presence of rapamycin. Thus inhibiting transcription of genes having sites that bind to the DNA binding region.
1.5 immune compatible molecules
The immune compatible molecule can regulate the expression of allogeneic immune rejection related genes in the pluripotent stem cells or derivatives thereof.
The types and sequences of specific immune-compatible molecules are shown in table 1.
TABLE 1 immune compatible molecules
The target sequences of the shRNA or shRNA-miR immune compatible molecules are shown in Table 2.
TABLE 2 target sequences for shRNA or shRNA-miR
In the scheme of knocking in the immune compatible molecules in the subsequent experiments, the shRNA or shRNA-miR sequences of each experimental group are shRNA or shRNA-miR immune compatible molecules constructed by adopting the target sequence 1 in the table 2. Those skilled in the art will understand that: the shRNA or shRNA-miR immune compatible molecule constructed by other target sequences can also realize the technical effect of the invention and all fall into the protection scope of the claims of the invention.
1.6shRNA/miRNA processing complex gene and anti-interferon effector molecule
The primary miRNA (pri-miRNA) in the nucleus is microprocessed through the complex Drosha-DGCR8, which cleaves the pri-miRNA into a precursor miRNA (pre-miRNA), which then forms a hairpin. Then, the pre-miRNA is transported out of the nucleus via the Exportin-5-Ran-GTP complex. The RNase Dicer enzyme, which binds to the double-stranded RNA-binding protein TRBP (TARBP2) in the cytoplasm, breaks down the pre-miRNA into mature lengths, at which time the miRNA is still in a double-stranded state. Finally, it is transported into AGO2 to form RISC (RNA-induced silencing complex). Finally, one strand of the miRNA double strand is retained in the RISC complex, and the other strand is eliminated and rapidly degraded. While DGCR8, the main binding protein of Drosha, can bind to pri-miRNA through two double-stranded RNA binding regions at its C-terminal end, recruit and guide Drosha to cut at the right position of pri-miRNA to produce pre-miRNA, which is further cut by Dicer and TRBP/PACT processing to form mature miRNA. Deletion or abnormal expression of DGCR8 affects the cleavage activity of Drosha, which in turn affects the activity of miRNA, leading to disease. TRBP is able to recruit Dicer complex mirnas to form RISC Ago 2.
When the shRNA-miR expression sequences aiming at HLA class I molecules, HLA class II molecules and the like which can be induced to be expressed in a closed mode are knocked in at a genome safe site by using a gene knock-in technology, shRNA and/or miRNA processing machines which can be induced to be expressed in a closed mode preferably comprise Drosha (access number: NM-001100412), Ago1(access number: NM-012199), Ago2(access number: NM-001164623), Dicer1(access number: NM-001195573), export-5 (access number: NM-020750), TRBP (access number: NM-134323), PACT (access number: NM-003690) and DGCR8(access number: NM-022720) so that cells do not occupy the processing of other miRNAs and influence the functions of the cells.
In addition, during IFN induction, double-stranded RNA-dependent Protein Kinase (PKR), which is a key factor of the whole cell signal transduction pathway, and 2 ', 5' Oligoadenylate Synthetase (2,5-Oligoadenylate Synthetase,2-5As), which are closely related to dsRNA-induced IFN, are involved. PKR can inhibit protein synthesis by phosphorylating eukaryotic cell transcription factors, arrest cells in G0/G1 and G2/M phases and induce apoptosis, while dsRNA can promote synthesis of 2-5As, which results in nonspecific activation of RNase, RNaseL, degradation of all mRNA in cells and cell death. The specificity of induction of type I interferons is achieved by members of the IRF transcription factor family, which are not inducible to be secreted in many viral infections in the absence of IRF-3 and IRF-7 expression in cells. Lack of IFN response, in order to recover, needs the two proteins were expressed together.
By utilizing a gene knock-in technology, when an immune compatible molecule shRNA-miR expression sequence is knocked in at a genome safety site, preferably, the shRNA and/or shRNA-miR expression sequence which can induce closed expression and aims at inhibiting PKR, 2-5As, IRF-3 and IRF-7 genes is knocked in at the same time, so that the interferon reaction induced by dsRNA is reduced, and the cytotoxicity is avoided.
The sequence of the insertion positions of the shRNA/miRNA processing complex related gene, the anti-interferon effector molecule and the immune compatible molecule at the genome safety site is not limited, and the shRNA/miRNA processing complex related gene, the anti-interferon effector molecule and the immune compatible molecule can be arranged in any sequence without mutual interference or influence on the structure and the function of other genes of the genome.
Specific target sequences for anti-interferon effector molecules are shown in table 3.
TABLE 3 target sequences for anti-interferon effector molecules
In the subsequent experiment including the scheme of knocking-in of the anti-interferon effector molecules, the target sequences of the anti-interferon effector molecules of each experimental group are the anti-interferon effector molecules constructed by adopting the target sequence 1 in the table 3. Those skilled in the art will understand that:
the anti-interferon effector molecules constructed by other target sequences can also achieve the technical effects of the invention and fall into the protection scope of the claims of the invention.
1.7 Universal framework for Immunocompatible molecules, shRNA or shRNA-miR of anti-Interferon Effector molecules
The general framework sequences of the shRNA or shRNA-miR of the immune compatible molecules and the anti-interferon effector molecules are as follows:
(1) the constitutive expression framework of shRNA is:
GAGGGCCTATTTCCCATGATTCCTTCATATTTGCATATACGATACAAGGCTGTTAGAGAGATAATTGGAATTAATTTGACTGTAAACACAAAGATATTAGTACAAAATACGTGACGTAGAAAGTAATAATTTCTTGGGTAGTTTGCAGTTTTAAAATTATGTTTTAAAATGGACTATCATATGCTTACCGTAACTTGAAAGTATTTCGATTTCTTGGCTTTATATATCTTGTGGAAAGGACGCTAGCGCCACC(SEQ ID NO.167)N1...N21TTCAAGAGA(SEQ ID NO.168)N22...N42TTTTTT;
wherein:
a、N1...N21shRNA target sequence for the corresponding Gene, N22...N42Is a reverse complementary sequence of the shRNA target sequence of the corresponding gene;
b. if the plasmid needs to express shRNAs of a plurality of genes, each gene corresponds to a shRNA expression frame and then is connected seamlessly;
c. constitutive shRNA plasmids with different resistance genes only have different resistance genes and have the same other sequences;
d. n represents A, T, G, C bp;
e. SEQ ID No.167 is the U6 promoter sequence;
f. SEQ ID NO.168 is a stem-loop sequence.
(2) The shRNA inducible expression framework is as follows:
GAGGGCCTATTTCCCATGATTCCTTCATATTTGCATATACGATACAAGGCTGTTAGAGAGATAATTGGAATTAATTTGACTGTAAACACAAAGATATTAGTACAAAATACGTGACGTAGAAAGTAATAATTTCTTGGGTAGTTTGCAGTTTTAAAATTATGTTTTAAAATGGACTATCATATGCTTACCGTAACTTGAAAGTATTTCGATTTCTTGGCTTTATATATCTTGTGGAAAGGACTTTACCACTCCCTATCAGTGATAGAGAAAAGTGAAAGTCGAGTTTACCACTCCCTATCAGTGATAGAGAAAAGTGAAAGTCGAGTTTACCACTCCCTATCAGTGATAGAGAAAAGTGAAAGTCGAGTTTACCACTCCCTATCAGTGATAGAGAAAAGTGAAAGTCGAGTTTACCACTCCCTATCAGTGATAGAGAAAAGTGAAAGTCGAGTTTACCACTCCCTATCAGTGATAGAGAAAAGTGAAAGTCGAGTTTACCACTCCCTATCAGTGATAGAGAAAAGTGAAAGTCGAGCTCGGTACCCGGGTCGAGGTAGGCGTGTACGGTGGGAGGCCTATATAAGCAGAGCTCGTTTAGTGAACCGTCAGATCGCCTGGAGACGCCATCCACGCTGTTTTGACCTCCATAGAAGACACCGGGACCGATCCAGCCTGCTAGCGCCACC(SEQ ID NO.169)N1...N21TTCAAGAGA(SEQ ID NO.168)N22...N42TTTTTT;
wherein:
a、N1...N21shRNA target sequence of the corresponding Gene, N22...N42Is a reverse complementary sequence of the shRNA target sequence of the corresponding gene;
b. if the plasmid needs to express shRNAs of a plurality of genes, each gene corresponds to a shRNA expression frame and then is connected seamlessly;
c. constitutive shRNA plasmids with different resistance genes only have different resistance genes and have the same other sequences;
d. n represents A, T, G, C bp;
e. SEQ ID No.166 is the H1 TO promoter sequence;
f. SEQ ID NO.165 is a stem-loop sequence.
(3) The shRNA-miR constitutive or inducible expression framework is as follows:
the shRNA-miR target sequence is used for replacing a target sequence in microRNA-30 to obtain the shRNA-miR target sequence, and the specific sequence is as follows:
GAGGCTTCAGTACTTTACAGAATCGTTGCCTGCACATCTTGGAAACACTTGCTGGGATTACTTCTTCAGGTTAACCCAACAGAAGGCTAAAGAAGGTATATTGCTGTTGACAGTGAGCG(SEQ ID NO.170)M1N1...N21TAGTGAAGCCACAGATGTA(SEQ ID NO.171)N22...N42M2TGCCTACTGCCTCGGACTTCAAGGGGCTACTTTAGGAGCAATTATCTTGTTTACTAAAACTGAATACCTTGCTATCTCTTTGATACATTTTTACAAAGCTGAATTAAAATGGTATAAAT(SEQ ID NO.172);
wherein:
a、N1...N21shRNA-miR target sequence, N, as a corresponding gene22...N42Is a reverse complementary sequence of shRNA-miR target sequence of a corresponding gene;
b. if the plasmid needs to express shRNA-miR of a plurality of genes, each gene corresponds to a shRNA-miR expression frame and is then connected seamlessly;
c. constitutive shRNA-miR plasmids with different resistance genes only have different resistance genes and have the same other sequences;
d. m is A or C, N is A, T, G, C;
e. if N is present1Is a G base, then M1Is A base; otherwise M1Is a C base;
f、M1base and M2And (3) base complementation.
1.8 Gene editing System, Gene editing method and test method
1.8.1 Gene editing System
The gene editing technology adopts a CRISPR-Cas9 gene editing system. The Cas9 protein used by the inventors was Cas9(D10A), Cas9(D10A) bound to sgrnas responsible for specific recognition of the target sequence (genomic DNA), which was then single-stranded cleaved by Cas9 (D10A). Double Strand breaks in genomic DNA (DSB) must occur, and two Cas 9(D10A)/sgRNA must cleave the two strands of genomic DNA separately, and not too far apart. The Cas 9(D10A)/sgRNA scheme has the advantage of higher specificity and lower probability of off-target compared to the Cas 9/sgRNA scheme. The plasmids or Donor fragments used in the gene editing system were: cas9(D10A) plasmid, sgRNA clone plasmid, Donor fragment.
(1) Cas9(D10A) plasmid: a plasmid expressing the Cas9(D10A) protein, specifically single-stranded cleaving genomic DNA under the direction of sgrnas.
(2) sgRNA plasmid: a plasmid for expressing sgRNA, sgRNA (small guide RNA), is a guide RNA (guide RNA, gRNA) responsible for directing targeted cleavage of the expressed Cas9(D10A) protein at gene editing.
(3) Donor fragment: the two ends contain recombination arms which are respectively positioned at the left side and the right side of the breaking position of the genome DNA, and the middle part contains genes, fragments or expression elements needing to be inserted. In the presence of the Donor fragment, the cells undergo a Homologous Recombination (HR) reaction at the site of the genomic break. If the Donor fragment is not added, Non-homologous End Joining-NHEJ reaction occurs at the site of the genomic break in the cell. This fragment was obtained by digesting KI (Knock-in, the same applies hereinafter) Vector plasmid and recovering it.
1.8.2 constitutive plasmids and inducible plasmids
Constitutive plasmid: the expression function of the Donor fragment obtained from the constitutive plasmid cannot be regulated after knocking in the genomic DNA.
Inducible plasmids: after knocking in the genomic DNA, the expression function of the Donor fragment obtained from the inducible plasmid can be controlled by adding an inducer, which is equivalent to adding a switch for turning on or off the expression function.
1.8.3 plasmid construction method
(1) Cas9(D10A) plasmid: this Plasmid no longer needs to be constructed and is ordered directly from Addgene (Plasmid 41816, Addgene).
(2) sgRNA plasmid: the original blank Plasmid is ordered from Addge (Plasmid 41824, Addge), then the DNA sequence is input in the website (URL: https:// ccttop. cos. uni-heidelberg. de) to design the target sequence, and finally different target sequences are respectively put into the blank sgRNA Plasmid to complete the construction.
(3) KI (Knock-in, the same applies below) Vector plasmid:
acquisition of Amp (R) -pUC origin fragment: designing PCR primers, and amplifying and recovering the fragment by a PCR method by using a pUC18(Takara, Code No.3218) plasmid as a template and a high fidelity enzyme (Nanjing Novozam organism, P505-d 1);
acquisition of aavs1 or eGSH recombination arms: extracting genome DNA of human cells and designing corresponding primers, and then amplifying and recovering the fragments by using the human genome DNA as a template and using a high fidelity enzyme (Nanjing Novozam organism, P505-d1) through a PCR method;
c. acquisition of the individual plasmid elements: designing PCR amplification primers of each element, and then respectively amplifying and recovering each plasmid element by using a plasmid containing the element as a template and using a high fidelity enzyme (Nanjing NuoZanza, P505-d1) through a PCR method;
d. assembling into a complete plasmid: the fragments obtained in the previous step were ligated together using a multi-fragment recombinase (Nanjing Nozam, C113-02) to form a complete plasmid.
1.8.4 Gene editing Process
Firstly, the single cell cloning operation procedure of AAVS1 gene knock-in (1) electrotransfer program:
donor cell preparation: human pluripotent stem cells.
The instrument comprises the following steps: an electrotransformation instrument.
Culture medium: BioCISO.
Induction of plasmid: cas9D10A, sgRNA clone AAVS1-1, sgRNA clone AAVS1-2, AAVS1 neo Vector I and AAVS1 neo Vector II.
Note: induction plasmid used for the knock-in of the eGSH gene: cas9D10A, sgRNA clone eGSH-1, sgRNA clone eGSH-2, eGSH-neo/eGSH-puro (donor) comparison of the donor plasmid with AAVS1 shows that only the right and left recombination arms are different, and the other elements are the same. Since the gene editing process of eGSH is the same as that of AAVS1, the following description will not be repeated.
(2) The transformed human pluripotent stem cells are screened in a double antibiotic medium containing G418 and puro.
(3) And (4) carrying out single cell clone screening and culture to obtain a single cell clone strain.
Second, AAVS1 gene knock-in single cell clone strain culture reagent
(1) Culture medium: BioCISO + 300. mu.g/mL G418+ 0.5. mu.g/mL puro (should be placed at room temperature in advance, protected from light for 30-60 minutes until room temperature is restored. Note that BioCISO should not be placed at 37 ℃ for preheating to avoid reduction of the activity of the biomolecule.).
(2) Matrix glue: hESC grade Matrigel (before passage or cell recovery, the Matrigel working solution is added into a cell culture bottle dish and is shaken up to ensure that the Matrigel completely sinks to the bottom of the culture bottle dish and any Matrigel cannot be dried before use. to ensure that the cells can be attached to the wall and survive better, the Matrigel is put into a 37 ℃ culture box for 1:100X Matrigel cannot be less than 0.5 hour and 1:200X Matrigel cannot be less than 2 hours.).
(3) Digestion solution: EDTA was dissolved using DPBS to a final concentration of 0.5mM, pH7.4 (note: EDTA cannot be diluted with water, otherwise the cells die due to reduced osmotic pressure).
(4) Freezing and storing liquid: 60% BioCISO + 30% ESCs grade FBS + 10% DMSO (the frozen stock is preferably ready for use).
Thirdly, the conventional maintenance subculture process
(1) Optimal time of passage and passage ratio
a. The best passage time: the overall confluency of the cells reaches 80 to 90 percent;
b. the optimal ratio of passage: the optimal confluence degree of the passage is maintained at 20-30% in the next day after passage of 1: 4-1: 7.
(2) Passage process
a. The Matrigel in the coated cell culture flask dishes was previously aspirated away, and an appropriate amount of medium (BioCISO + 300. mu.g/mL G418+ 0.5. mu.g/mL puro) was added to the flask and placed at 37 ℃ in 5% CO2Incubation in an incubator;
b. when the cells meet the requirement of passage, sucking the supernatant of the culture medium, and adding a proper amount of 0.5mM EDTA digestive solution into a cell bottle dish;
c. the cells were incubated at 37 ℃ with 5% CO2Incubating in an incubator for 5-10 minutes (digesting until most cells are observed to shrink and become round under a microscope but not float, gently blowing the cells to separate the cells from the wall, sucking the cell suspension into a centrifugal tube, and centrifuging for 5 minutes at 200 g;
d. centrifuging, discarding the supernatant, suspending the cells by using a culture medium, gently and repeatedly blowing the cells for several times until the cells are uniformly mixed, and then transferring the cells to a bottle dish prepared for coating Matrigel in advance;
e. after the cells were transferred to the cell flask, the cells were horizontally shaken up all around, observed under a mirror to be free from abnormality, and then shaken up and placed at 37 ℃ with 5% CO2Culturing in an incubator;
f. observing the adherent survival state of the cells the next day, and normally and regularly changing the culture medium every day by sucking off the culture medium.
Fourthly, freezing and storing cells
(1) According to the conventional passage operation steps, digesting the cells by using 0.5mM EDTA until most cells shrink and become round but do not float, gently blowing and beating the cells, collecting cell suspension, centrifuging for 5 minutes at 200g, removing supernatant, adding a proper amount of freezing medium to resuspend the cells, and transferring the cells to a freezing tube (suggesting that one frozen cell with 80% confluence degree of a six-well plate and 0.5 mL/cell of freezing medium is frozen);
(2) placing the freezing tube in a programmed cooling box, and immediately placing the freezing tube at-80 ℃ overnight (ensuring that the temperature of the freezing tube is reduced by 1 ℃ per minute);
(3) the next day the cells were immediately transferred into liquid nitrogen.
Fifth, cell recovery
(1) Preparing a Matrigel-coated cell bottle dish in advance, sucking out the Matrigel before recovering the cells, adding a proper amount of BioCISO into the cell bottle dish, placing at 37 ℃ and 5% CO2Incubation in an incubator;
(2) taking out the cryopreservation tube from liquid nitrogen quickly, immediately putting the tube into a 37 ℃ water bath kettle for quick shaking to quickly melt the cells, carefully observing, stopping shaking after the ice crystals completely disappear, and transferring the cells to a biological safety cabinet;
(3) adding 10mL of DMEM/F12(1:1) basal medium into a 15mL centrifuge tube in advance, balancing to room temperature, sucking 1mL of DMEM/F12(1:1) by using a Pasteur pipette, slowly adding the DMEM/F12(1:1) into a freezing tube, gently mixing, transferring the cell suspension into a prepared 15mL centrifuge tube containing DMEM/F12(1:1), and centrifuging for 5 minutes at 200 g;
(4) carefully removing supernatant, adding appropriate amount of BioCISO, gently mixing cells, seeding into a cell bottle dish prepared in advance, shaking up horizontally, and observing under the mirror, shaking up, and standing at 37 deg.C and 5% CO2Culturing in an incubator;
(5) the adherent survival state of the cells is observed the next day, and the liquid is normally changed on time every day. If the adherence is good, the BioCISO is changed to BioCISO + 300. mu.g/mL G418+ 0.5. mu.g/mL puro.
1.8.5AAVS1 gene knock-in detection method
Single cell clone AAVS1 gene knock-in detection
(1) AAVS1 Gene knock-in assay
a. The purpose of the test is as follows: detecting the cells subjected to the gene knock-in treatment by PCR, and testing whether the cells are homozygotes; since the two Donor segments only have the difference in the sequences of the resistance genes, it is necessary to determine whether the cell is homozygous (the two chromosomes knock in the Donor segments of different resistance genes respectively), and it is only possible that the double-knocked-in cell is the correct homozygous by detecting whether the genome of the cell contains the Donor segments of the two resistance genes;
b. the test method comprises the steps of designing a primer in a Donor plasmid (non-recombinant arm part), and designing another primer in a genome PPP1R12C (non-recombinant arm part); if the Donor fragment can be correctly inserted into the genome, a target band appears, otherwise no target band appears);
c. test protocol primer sequences and PCR protocols are shown in Table 4.
TABLE 4 test protocol primer sequences and PCR protocol
Secondly, the detection method of the eGSH gene knock-in is the same as the detection principle and the detection method of the AAVS1 gene knock-in.
1.8.6 inspection method of knock-in Gene method at genomic safety site
(1) The purpose of the test is as follows: the cells treated by knock-in were tested for homozygote by PCR. Since the two Donor fragments have only difference in the sequences of the resistance genes, it is necessary to determine whether the cell is homozygous (the two chromosomes knock in the Donor fragments of different resistance genes), and it is only possible that the double-knocked-in cell is the correct homozygous by determining whether the genome of the cell contains the Donor fragments of the two resistance genes.
(2) The test method comprises the following steps: first, one primer was designed inside the Donor plasmid (non-recombinant arm portion), and then the other primer was designed in the genome (non-recombinant arm portion). If the Donor fragment is inserted correctly in the genome, the target band will appear, otherwise no target band will appear.
1.9 method for measuring IL-1 blocker expressed by pluripotent Stem cells
IL-1ra detection: IL-1ra expressed by pluripotent stem cells and derivatives thereof was detected using human IL-1ra ELISA kit (abcam, lot # ab 211650). Collecting culture supernatant of the pluripotent stem cells expressing IL-1ra and the derivatives thereof, loading the culture supernatant on an enzyme label plate, adding 40ul of sample diluent into a sample hole to be detected, then adding 10ul of sample to be detected, adding culture supernatant of the pluripotent stem cells not expressing IL-1ra and the derivatives thereof into a control group, and gently mixing the culture supernatants. Placing the plate on a sealing plate, incubating for 30min at 37 ℃, washing for 5 times, adding 50ul of enzyme labeling reagent, placing the plate on the sealing plate, incubating for 30min at 37 ℃, washing for 5 times, adding color development liquid, developing for 15min, adding 50ul of stop solution, reading, measuring the absorbance value at 450nm, and positively correlating the expression level of IL-1ra with the color depth.
anti-IL-1 antibody detection: the detection of anti-IL-1 antibodies expressed by pluripotent stem cells and derivatives thereof was performed using ELISA (double antigen sandwich). Collecting culture supernatant of the pluripotent stem cells expressing the anti-IL-1 antibody and the derivatives thereof, loading the culture supernatant on an ELISA plate coated with the human IL-1 antigen, loading sample diluent 40ul into a sample hole to be detected, then loading 10ul of the sample to be detected, loading culture supernatant of the pluripotent stem cells not expressing the anti-IL-1 antibody and the derivatives thereof into a control group, and gently mixing the culture supernatants. Placing the plate on a sealing plate, incubating for 30min at 37 ℃, washing for 5 times, adding 50ul enzyme-labeled IL-1 antigen reagent, placing the plate on the sealing plate, incubating for 30min at 37 ℃, washing for 5 times, adding a developing solution, developing for 15min, adding 50ul stop solution, reading, measuring the absorbance value at 450nm, wherein the expression quantity of the IL-1 antibody is in positive correlation with the color depth.
1.10 mouse rheumatoid arthritis model detection of therapeutic Effect of IL-1 blockers
In humanized NSG mice (The Jackson Laboratory (JAX)), human immune cells from The same donor are injected to reconstitute The immune system of The mice. After 2 weeks, the collagen is used for inducingThe arthritis model of the mouse is established, firstly, bovine type II collagen and a complete adjuvant are mixed and emulsified, 4-6 points of the back of the mouse are taken for injection, 200 ul/mouse is used, after 3 weeks, incomplete adjuvant and bovine type II collagen are mixed and emulsified, 3-5 points of the tail root of the mouse are injected, and 100 ul/mouse is used. After the mice show arthritic symptoms, the mice with the same symptoms are selected for grouping and then the experiment is carried out. Tail vein injection of 200uL PBS (containing 10)6The pluripotent stem cell derivative expressing an IL-1 blocker, which is derived from the same donor as the human immune cell) for rheumatoid arthritis treatment. And then scoring the treatment condition of the arthritis of the mice to judge the treatment condition of the rheumatoid arthritis, and carrying out difference statistical analysis. The mouse arthritis index calculation takes the following grading scores: 0 min-joint has no red swelling; 1 fen-red swelling of the toe joint; 2-swelling of the toe joints or toes; 3 min-swelling of the toe joints and toes; 4 cents-swelling of the paw below the ankle joint; 5 points-swelling of the ankle and all paws, severe deformity of the joints. Relative swelling degree ═ arthritis index after treatment/arthritis index without treatment after inflammation × 100%.
2. Experimental protocol
First, the gene expressing the IL-1 blocker is knocked into a genomic safe site (safe harbour) to achieve expression of the IL-1 blocker by the pluripotent stem cell derivative. Thereby enabling the pluripotent stem cell derivative to be applied to disease treatment. Then, the derivative (the pluripotent stem cell derivative expressing the IL-1 blocker) can be modified by a gene editing technology to be a constitutive immune-compatible universal pluripotent stem cell derivative and an immune-compatible reversible universal pluripotent stem cell derivative, so that disease treatment can be performed in an allogeneic way.
Specifically, the method comprises the following steps: the following genetic manipulations were performed in pluripotent stem cell derivatives expressing IL-1 blockers to achieve immunological compatibility of allogeneic hPSCs and hPSCs-derived derivatives (hPSCs-MSCs, NSCs, EBs).
The experimental protocol for knocking in genes expressing IL-1 blockers, one or more immune compatible molecules, genes associated with shRNA and/or miRNA processing complex, anti-interferon effector molecules into safe loci in the genome of pluripotent stem cells is shown in tables 5 and 6, wherein the "+" sign indicates knocking in a gene or nucleic acid sequence and the "-" sign indicates gene knock out.
The following vectors were constructed according to the plasmid construction method in 1.8.3, respectively:
TABLE 5 constitutive expression protocol
The plasmids selected and the specific knock-in positions were as follows:
the IL-1 antibody is a secretory antibody, and the structure of the IL-1 alpha antibody is as follows: signal peptide 1+ light chain (containing stop codon) + IRESWt (SEQ ID NO.181) + signal peptide 2+ heavy chain (containing stop codon), the stop codon is generally TGA.
IL-1 β antibody Structure: the signal peptide 3+ light chain (containing a stop codon) + IRESWT (SEQ ID NO.181) + signal peptide 3+ heavy chain (containing a stop codon), the stop codon being generally TGA.
Wherein, the sequence of the signal peptide 1 is as follows: ATGGAGTTCGGCCTGAGCTGGGTGTTCCTGGTGGCCCTGCTGAGGGGCGTGCAGTGC (SEQ ID NO. 182).
The sequence of signal peptide 2 is: ATGGACATGAGGGTGCCCGCCCAGCTGCTGGGCCTGCTGCTGCTGTGGTTCCCCGGCAGCAGGTGC (SEQ ID NO. 183).
The sequence of signal peptide 3 is: ATGTACAGGATGCAACTCCTGTCTTGCATTGCACTAAGTCTTGCACTTGTCACGAATTCG (SEQ ID NO. 184).
General principle: the IL-1ra sequence and the IL-1 antibody sequence are put in the position of MCS2 of the corresponding plasmid (note that signal peptides are added in front of the LC light chain and HC heavy chain of the antibody; signal peptides are also added in front of the IL-1ra sequence, as shown above), the shRNA is put in the shRNA expression frame of the corresponding plasmid, the shRNA-miR is put in the shRNA-miR expression frame of the corresponding plasmid, and other genes are put in the position of MCS of the corresponding plasmid. The maps of the plasmids are shown in FIGS. 1 to 11.
Wherein the sgRNA clone B2M plasmid comprises sgRNA clone B2M-1 and sgRNA clone B2M-2 plasmids. The sgRNA clone CIITA plasmid comprises sgRNA clone CIITA-1 and sgRNA clone CIITA-2 plasmids.
(1) Aa1 grouping (IL-1ra)
The IL-1ra sequence was placed into MCS2 of AAVS1 KI Vector (shRNA, constitutive) plasmid.
(2) Aa2 subgroup (IL-1ra, shRNA, Gene)
The IL-1ra sequence was placed into MCS2 of AAVS1 KI Vector (shRNA, constitutive) plasmid. The shRNA expression framework places the shRNA target sequence (if multiple shrnas are present, they are seamlessly joined). MCS1 was placed into the gene sequence (if multiple genes were present, they were ligated using EMCV IRESWT).
(3) Aa3 subgroup (IL-1ra, shRNA-miR, Gene)
The IL-1ra sequence was placed into MCS2 of AAVS1 KI Vector (shRNA-miR, constitutive) plasmid. The shRNA-miR expression framework is placed into a shRNA target sequence (if a plurality of shRNA-miRs exist, seamless connection is realized). MCS1 was placed into the gene sequence (if multiple genes were present, they were ligated using EMCV IRESWT).
(4) Aa4 grouping (IL-1ra, B2M and CIITA double knockout, Gene)
The IL-1ra sequence was placed into MCS2 of AAVS1 KI Vector (shRNA, constitutive) plasmid. MCS1 was placed into the gene sequence (if multiple genes were present, they were ligated using EMCV IRESWT).
The target sequence of the sgRNA clone B2M plasmid was placed into the sgRNA target sequence of B2M (SEQ ID NO.184 and SEQ ID NO.185), and the target sequence of the sgRNA clone CIITA plasmid was placed into the sgRNA target sequence of CIITA (SEQ ID NO.186 and SEQ ID NO. 187).
(5) Aa5 subgroup (IL-1ra, shRNA, Gene)
A method grouped with Aa 2.
(6) Aa6 subgroup (IL-1ra, shRNA-miR, Gene)
A method grouped with Aa 3.
(7) Ab1 grouping (IL-1. alpha. antibody)
MCS2 of AAVS1 KI Vector (shRNA, constitutive) plasmid was put into LC light and HC heavy chain sequences of antibody, and ligated together using EMCV IRESwt, in the following order: LC light chain, EMCV IRESwt, HC heavy chain.
(8) Ab2 grouping (IL-1 alpha antibody, shRNA, gene)
MCS2 of AAVS1 KI Vector (shRNA, constitutive) plasmid was put into LC light and HC heavy chain sequences of antibody, and ligated together using EMCV IRESwt, in the following order: LC light chain, EMCV IRESwt, HC heavy chain. The shRNA expression framework places the shRNA target sequence (if multiple shrnas are present, they are seamlessly joined). MCS1 was placed into the gene sequence (if multiple genes were present, they were ligated using EMCV IRESWT).
(9) Ab3 grouping (IL-1 alpha antibody, shRNA-miR, gene)
The MCS2 of AAVS1 KI Vector (shRNA-miR, constitutive) plasmid was put into the LC light chain and HC heavy chain sequences of the antibody, and the middle was connected using EMCV IRESWht, and the ordering was as follows: LC light chain, EMCV IRESwt, HC heavy chain. The shRNA-miR expression framework places shRNA target sequences (if multiple shRNA-mirs are present, they are seamlessly connected). MCS1 was placed into the gene sequence (if multiple genes were present, they were ligated using EMCV IRESWT).
(10) Ab4 grouping (IL-1. alpha. antibody, B2M and CIITA double knockout, Gene)
MCS2 of AAVS1 KI Vector (shRNA, constitutive) plasmid places LC light chain and HC heavy chain sequences of the antibody, joined using EMCV IRESwt in between, in the following order: LC light chain, EMCV IRESwt, HC heavy chain. MCS1 was placed into the gene sequence (if multiple genes were present, they were ligated using EMCV IRESWT).
The target sequence of the sgRNA clone B2M plasmid was placed into the sgRNA target sequence of B2M (SEQ ID NO.185 and SEQ ID NO.186), and the target sequence of the sgRNA clone CIITA plasmid was placed into the sgRNA target sequence of CIITA (SEQ ID NO.187 and SEQ ID NO. 188).
(11) Ab5 grouping (IL-1 alpha antibody, shRNA, gene)
Methods grouped with Ab 2.
(12) Ab6 grouping (IL-1 alpha antibody, shRNA-miR, gene)
Methods grouped with Ab 3.
TABLE 6 Experimental protocol for inducible expression
(1) Ba1 grouping (IL-1ra, shRNA, gene)
The IL-1ra sequence was placed into MCS2 of AAVS1 KI Vector (shRNA, inducible) plasmid. The shRNA expression framework places the shRNA target sequence (if multiple shrnas are present, they are seamlessly joined). MCS1 was placed into the gene sequence (if multiple genes were present, they were ligated using EMCV IRESWT).
(2) Ba2 grouping (IL-1ra, shRNA-miR, gene)
IL-1ra sequence was placed into MCS2 of AAVS1 KI Vector (shRNA-miR, inducible) plasmid. The shRNA-miR expression framework places shRNA target sequences (if multiple shRNA-mirs are present, they are seamlessly connected). MCS1 was placed into the gene sequence (if multiple genes were present, they were ligated using EMCV IRESWT).
(3) Ba3 grouping (IL-1ra, shRNA, gene)
A method grouped with Ba 1.
(4) Ba4 grouping (IL-1ra, shRNA-miR, gene)
Method grouped with Ba 2.
(5) Bb1 grouping (IL-1 alpha antibody, shRNA, Gene)
IL-1 antibody sequences were placed into MCS2 of AAVS1 KI Vector (shRNA, inducible) plasmid. The shRNA expression framework places the shRNA target sequence (if multiple shrnas are present, they are seamlessly joined). MCS1 was placed into the gene sequence (if multiple genes were present, they were ligated using EMCV IRESWT).
(6) Bb2 grouping (IL-1 alpha antibody, shRNA-miR, gene)
IL-1 antibody sequences were placed into MCS2 of AAVS1 KI Vector (shRNA-miR, inducible) plasmid. The shRNA-miR expression framework places shRNA target sequences (if multiple shRNA-mirs are present, they are seamlessly connected). MCS1 was placed into the gene sequence (if multiple genes were present, they were ligated using EMCV IRESWT).
(7) Bb3 grouping (IL-1 alpha antibody, shRNA, Gene)
Methods grouped with Bb 1.
(8) Bb4 grouping (IL-1 alpha antibody, shRNA-miR, gene)
Methods grouped with Bb 2.
EXAMPLE 1 detection of IL-1ra expression by pluripotent Stem cell derivatives expressing IL-1 receptor antagonists
The experimental group protocols in tables 5 and 6 were knocked into the genome safety sites of iPSCs, EBs, MSCs and NSCs cells at 37 ℃ with 0.5% CO2Culturing in an incubator, collecting culture supernatant of the pluripotent stem cells expressing IL-1ra and the derivatives thereof, loading on an enzyme label plate, adding 40ul of sample diluent into sample holes to be detected, then adding 10ul of samples to be detected, adding culture supernatant of the pluripotent stem cells not expressing IL-1ra and the derivatives thereof into a control group, and slightly and uniformly mixing. Sealing the plate, incubating at 37 deg.C for 30min, washing for 5 times, adding enzyme labeling reagent 50ul, sealing the plate, incubating at 37 deg.C for 30min, washing for 5 times, adding developing solution for developing for 15min, adding stop solution 50ul, reading, and measuring absorbance value at 450nm, with the results shown in Table 7.
TABLE 7 IL-1ra ELISA detection of expression in each experimental group
As can be seen from the above table, the pluripotent stem cells or derivatives thereof prepared by the invention can effectively express IL-1 ra. And the expression level is relatively constant in each group, so that the IL-1ra expressed by the pluripotent stem cell derivative is not influenced by cell differentiation morphology and other exogenous genes (immune compatibility modification).
EXAMPLE 2 detection of IL-1 antibody expressing pluripotent Stem cell derivatives expressing IL-1 antibody
The experimental group protocols in tables 5 and 6 were knocked into the genome safety sites of iPSCs, EBs, MSCs and NSCs cells at 37 ℃ with 0.5% CO2Culturing in incubator, collecting culture supernatant of pluripotent stem cell expressing anti-IL-1 antibody and its derivatives, loading on ELISA plate coated with human IL-1 antigen, loading sample dilution 40ul in sample hole, adding sample 10ul in sample, and adding control groupAdding culture supernatant of pluripotent stem cells and derivatives thereof which do not express anti-IL-1 antibody, and gently mixing. Placing the sealing plate at 37 ℃ for incubation for 30min, washing for 5 times, adding 50ul enzyme-labeled IL-1 antigen reagent, placing the sealing plate at 37 ℃ for incubation for 30min, washing for 5 times, adding developing solution for developing for 15min, adding stop solution for 50ul, reading, and measuring the absorbance value at 450nm, wherein the results are shown in Table 8.
TABLE 8 ELISA detection of IL-1 antibody expressed by each experimental group
As can be seen from the above table, the pluripotent stem cells or derivatives thereof prepared according to the present invention can efficiently express anti-IL-1 antibodies. And the expression level is relatively constant in each group, so that the anti-IL-1 antibody expressed by the pluripotent stem cell derivative is not influenced by cell differentiation morphology and other exogenous genes (immune compatibility modification).
Example 3 Effect of IL-1 blockers in the treatment of rheumatoid arthritis
The inventors selected cells (MSCs) that only expressed the blocker protocol group (Aa1, Ab1) for testing.
In a humanized NSG mouse rheumatoid arthritis model, hPSCs and hPSCs source derivatives (hPSCs-MSCs, hPSCs-NSCs and hPSCs-EBs) capable of expressing IL-1 blockers (IL-1ra and anti-IL-1 antibodies) are injected into the mouse, and the effect of the mouse in treating rheumatoid arthritis is observed.
Note: to avoid the problem of immune compatibility, the immunocytes used are derived from the same person as the hPSCs and derivatives of hPSCs.
TABLE 9 Effect of IL-1 blockers expressed in each experimental group on the treatment of rheumatoid arthritis
Through the experiment, the stem cell expressing the IL-1 blocker or the derivative thereof prepared by the invention can be proved to have the effect of effectively treating rheumatoid arthritis.
Example 4 Effect of an immune-compatible molecule-inducible expression set in the treatment of rheumatoid arthritis
Through the above examples, hPSCs and hPSCs derived derivatives expressing IL-1 blockers are effective in treating rheumatoid arthritis. We must also consider the issue of immune compatibility of hPSCs and derivatives of hPSCs origin. Therefore we chose a suitable combination to test for immune compatibility.
By utilizing the characteristic of low immunogenicity of the MSCs, in a humanized NSG mouse disease model, injecting hPSCs source immune compatible MSCs capable of expressing IL-1 blocker (IL-1ra) into a mouse, and observing the effect of the hPSCs source immune compatible MSCs on treating rheumatoid arthritis. Note: the immunocytes used are derived from non-identical persons with the MSCs of hPSCs source.
The control group refers to the NSG mouse disease model without MSCs cell injection.
The process of adding the Dox group is: mice were fed with 0.5mg/mL Dox in the mouse diet, and the mice were used from the time of injection of the expression blocker cells until the end of the experiment.
TABLE 10 reversible expression test results for immune-compatible molecule-inducible expression sets
The above experiments show that: in the treatment of rheumatoid arthritis. MSCs that express only blockers (group 2), which have low immunogenicity and can exist within a foreign body for a certain period of time, can exert a certain therapeutic effect, while those that are immuno-compatibly engineered (groups 3-11, including constitutive and reversible inducible immuno-compatibility), which have better immuno-compatibility effects, are present in vivo for a longer time (or can coexist for a long period of time) than MSCs that have not been immuno-compatibly engineered, which exert better therapeutic effects, whereas group 5 is the B2M and CIITA gene knock-out groups, which completely eliminate the effects of HLA-I and HLA-II molecules, and thus have the best therapeutic effects. However, there are group 8-15 protocols set up due to their constitutive immune compatible modifications (knock-in/knock-out) which cannot be cleared when the graft becomes mutated or otherwise unwanted. In groups 12-15, the mice injected with the expression blocker cells will be abolished from their immune compatibility by the use of Dox inducer (always used) simultaneously with the injection of the expression blocker cells into the mice, and will be present in vivo for a time period comparable to that of the MSCs without immune compatibility engineering, and will be treated with a therapeutic effect comparable to that of the MSCs without immune compatibility engineering.
The above embodiments are preferred embodiments of the present invention, but the present invention is not limited to the above embodiments, and any other changes, modifications, substitutions, combinations, and simplifications which do not depart from the spirit and principle of the present invention should be construed as equivalents thereof, and all such changes, modifications, substitutions, combinations, and simplifications are intended to be included in the scope of the present invention.
SEQUENCE LISTING
<110> future Chile regenerative medicine institute (Guangzhou) Co., Ltd
Wang Linli
<120> pluripotent stem cell derivative expressing IL-1 blocking substance and application thereof
<130>
<160> 188
<170> PatentIn version 3.5
<210> 1
<211> 1356
<212> DNA
<213> Artificial sequence
<400> 1
caggtgcagc tggtggagag cggcggcggc gtggtgcagc ccggcaggag cctgaggctg 60
agctgcaccg ccagcggctt caccttcagc atgttcggcg tgcactgggt gaggcaggcc 120
cccggcaagg gcctggagtg ggtggccgcc gtgagctacg acggcagcaa caagtactac 180
gccgagagcg tgaagggcag gttcaccatc agcagggaca acagcaagaa catcctgttc 240
ctgcagatgg acagcctgag gctggaggac accgccgtgt actactgcgc caggggcagg 300
cccaaggtgg tgatccccgc ccccctggcc cactggggcc agggcaccct ggtgaccttc 360
agcagcgcca gcaccaaggg ccccagcgtg ttccccctgg cccccagcag caagagcacc 420
agcggcggca ccgccgccct gggctgcctg gtgaaggact acttccccga gcccgtgacc 480
gtgagctgga acagcggcgc cctgaccagc ggcgtgcaca ccttccccgc cgtgctgcag 540
agcagcggcc tgtacagcct gagcagcgtg gtgaccgtgc ccagcagcag cctgggcacc 600
cagacctaca tctgcaacgt gaaccacaag cccagcaaca ccaaggtgga caagagggtg 660
gagcccaaga gctgcgacaa gacccacacc tgccccccct gccccgcccc cgagctgctg 720
ggcggcccca gcgtgttcct gttccccccc aagcccaagg acaccctgat gatcagcagg 780
acccccgagg tgacctgcgt ggtggtggac gtgagccacg aggaccccga ggtgaagttc 840
aactggtacg tggacggcgt ggaggtgcac aacgccaaga ccaagcccag ggaggagcag 900
tacaacagca cctacagggt ggtgagcgtg ctgaccgtgc tgcaccagga ctggctgaac 960
ggcaaggagt acaagtgcaa ggtgagcaac aaggccctgc ccgcccccat cgagaagacc 1020
atcagcaagg ccaagggcca gcccagggag ccccaggtgt acaccctgcc ccccagcagg 1080
gaggagatga ccaagaacca ggtgagcctg acctgcctgg tgaagggctt ctaccccagc 1140
gacatcgccg tggagtggga gagcaacggc cagcccgaga acaactacaa gaccaccccc 1200
cccgtgctgg acagcgacgg cagcttcttc ctgtacagca agctgaccgt ggacaagagc 1260
aggtggcagc agggcaacgt gttcagctgc agcgtgatgc acgaggccct gcacaaccac 1320
tacacccaga agagcctgag cctgagcccc ggcaag 1356
<210> 2
<211> 642
<212> DNA
<213> Artificial sequence
<400> 2
gacatccaga tgacccagag ccccagcagc gtgagcgcca gcgtgggcga cagggtgacc 60
atcacctgca gggccagcca gggcatcagc agctggctgg cctggtacca gcagaagccc 120
ggcaaggccc ccaagctgct gatctacgag gccagcaacc tggagaccgg cgtgcccagc 180
aggttcagcg gcagcggcag cggcagcgac ttcaccctga ccatcagcag cctgcagccc 240
gaggacttcg ccacctacta ctgccagcag accagcagct tcctgctgag cttcggcggc 300
ggcaccaagg tggagcacaa gaggaccgtg gccgccccca gcgtgttcat cttccccccc 360
agcgacgagc agctgaagag cggcaccgcc agcgtggtgt gcctgctgaa caacttctac 420
cccagggagg ccaaggtgca gtggaaggtg gacaacgccc tgcagagcgg caacagccag 480
gagagcgtga ccgagcagga cagcaaggac agcacctaca gcctgagcag caccctgacc 540
ctgagcaagg ccgactacga gaagcacaag gtgtacgcct gcgaggtgac ccaccagggc 600
ctgagcagcc ccgtgaccaa gagcttcaac aggggcgagt gc 642
<210> 3
<211> 1335
<212> DNA
<213> Artificial sequence
<400> 3
caggtgcagc tgcaggagag cggccccggc ctggtgaagc ccagccagac cctgagcctg 60
acctgcagct tcagcggctt cagcctgagc accagcggca tgggcgtggg ctggatcagg 120
cagcccagcg gcaagggcct ggagtggctg gcccacatct ggtgggacgg cgacgagagc 180
tacaacccca gcctgaagag caggctgacc atcagcaagg acaccagcaa gaaccaggtg 240
agcctgaaga tcaccagcgt gaccgccgcc gacaccgccg tgtacttctg cgccaggaac 300
aggtacgacc ccccctggtt cgtggactgg ggccagggca ccctggtgac cgtgagcagc 360
gccagcacca agggccccag cgtgttcccc ctggccccct gcagcaggag caccagcgag 420
agcaccgccg ccctgggctg cctggtgaag gactacttcc ccgagcccgt gaccgtgagc 480
tggaacagcg gcgccctgac cagcggcgtg cacaccttcc ccgccgtgct gcagagcagc 540
ggcctgtaca gcctgagcag cgtggtgacc gtgaccagca gcaacttcgg cacccagacc 600
tacacctgca acgtggacca caagcccagc aacaccaagg tggacaagac cgtggagagg 660
aagtgctgcg tggagtgccc cccctgcccc gccccccccg tggccggccc cagcgtgttc 720
ctgttccccc ccaagcccaa ggacaccctg atgatcagca ggacccccga ggtgacctgc 780
gtggtggtgg acgtgagcca cgaggacccc gaggtgcagt tcaactggta cgtggacggc 840
atggaggtgc acaacgccaa gaccaagccc agggaggagc agttcaacag caccttcagg 900
gtggtgagcg tgctgaccgt ggtgcaccag gactggctga acggcaagga gtacaagtgc 960
aaggtgagca acaagggcct gcccgccccc atcgagaaga ccatcagcaa gaccaagggc 1020
cagcccaggg agccccaggt gtacaccctg ccccccagca gggaggagat gaccaagaac 1080
caggtgagcc tgacctgcct ggtgaagggc ttctacccca gcgacatcgc cgtggagtgg 1140
gagagcaacg gccagcccga gaacaactac aagaccaccc cccccatgct ggacagcgac 1200
ggcagcttct tcctgtacag caagctgacc gtggacaaga gcaggtggca gcagggcaac 1260
gtgttcagct gcagcgtgat gcacgaggcc ctgcacaacc actacaccca gaagagcctg 1320
agcctgagcc ccggc 1335
<210> 4
<211> 642
<212> DNA
<213> Artificial sequence
<400> 4
gacatccaga tgacccagag caccagcagc ctgagcgcca gcgtgggcga cagggtgacc 60
atcacctgca gggccagcca ggacatcagc aactacctga gctggtacca gcagaagccc 120
ggcaaggccg tgaagctgct gatctactac accagcaagc tgcacagcgg cgtgcccagc 180
aggttcagcg gcagcggcag cggcaccgac tacaccctga ccatcagcag cctgcagcag 240
gaggacttcg ccacctactt ctgcctgcag ggcaagatgc tgccctggac cttcggccag 300
ggcaccaagc tggagatcaa gaggaccgtg gccgccccca gcgtgttcat cttccccccc 360
agcgacgagc agctgaagag cggcaccgcc agcgtggtgt gcctgctgaa caacttctac 420
cccagggagg ccaaggtgca gtggaaggtg gacaacgccc tgcagagcgg caacagccag 480
gagagcgtga ccgagcagga cagcaaggac agcacctaca gcctgagcag caccctgacc 540
ctgagcaagg ccgactacga gaagcacaag gtgtacgcct gcgaggtgac ccaccagggc 600
ctgagcagcc ccgtgaccaa gagcttcaac aggggcgagt gc 642
<210> 5
<211> 459
<212> DNA
<213> Artificial sequence
<400> 5
atgaggccca gcggcaggaa gagcagcaag atgcaggcct tcaggatctg ggacgtgaac 60
cagaagacct tctacctgag gaacaaccag ctggtggccg gctacctgca gggccccaac 120
gtgaacctgg aggagaagat cgacgtggtg cccatcgagc cccacgccct gttcctgggc 180
atccacggcg gcaagatgtg cctgagctgc gtgaagagcg gcgacgagac caggctgcag 240
ctggaggccg tgaacatcac cgacctgagc gagaacagga agcaggacaa gaggttcgcc 300
ttcatcagga gcgacagcgg ccccaccacc agcttcgaga gcgccgcctg ccccggctgg 360
ttcctgtgca ccgccatgga ggccgaccag cccgtgagcc tgaccaacat gcccgacgag 420
ggcgtgatgg tgaccaagtt ctacttccag gaggacgag 459
<210> 6
<211> 21
<212> DNA
<213> human
<400> 6
gggagcagag aattctctta t 21
<210> 7
<211> 21
<212> DNA
<213> human
<400> 7
ggagcagaga attctcttat c 21
<210> 8
<211> 21
<212> DNA
<213> human
<400> 8
gagcagagaa ttctcttatc c 21
<210> 9
<211> 21
<212> DNA
<213> human
<400> 9
gctacctgga gcttcttaac a 21
<210> 10
<211> 21
<212> DNA
<213> human
<400> 10
ggagcttctt aacagcgatg c 21
<210> 11
<211> 21
<212> DNA
<213> human
<400> 11
gggtctccag tatattcatc t 21
<210> 12
<211> 21
<212> DNA
<213> human
<400> 12
gcctcctgat gcacatgtac t 21
<210> 13
<211> 21
<212> DNA
<213> human
<400> 13
ggaagacctg ggaaagcttg t 21
<210> 14
<211> 21
<212> DNA
<213> human
<400> 14
ggctaagctt gtacaataac t 21
<210> 15
<211> 21
<212> DNA
<213> human
<400> 15
gcggaatgaa ccacatcttg c 21
<210> 16
<211> 21
<212> DNA
<213> human
<400> 16
ggccttctct gaaggacatt g 21
<210> 17
<211> 21
<212> DNA
<213> human
<400> 17
ggactcaatg cactgacatt g 21
<210> 18
<211> 21
<212> DNA
<213> human
<400> 18
ggtacccact gctctggtta t 21
<210> 19
<211> 21
<212> DNA
<213> human
<400> 19
gctcccactc catgaggtat t 21
<210> 20
<211> 21
<212> DNA
<213> human
<400> 20
ggtatttctt cacatccgtg t 21
<210> 21
<211> 21
<212> DNA
<213> human
<400> 21
aggagacacg gaatgtgaag g 21
<210> 22
<211> 21
<212> DNA
<213> human
<400> 22
gctcccactc catgaggtat t 21
<210> 23
<211> 21
<212> DNA
<213> human
<400> 23
ggtatttcta cacctccgtg t 21
<210> 24
<211> 21
<212> DNA
<213> human
<400> 24
ggaccggaac acacagatct a 21
<210> 25
<211> 21
<212> DNA
<213> human
<400> 25
accggaacac acagatctac a 21
<210> 26
<211> 21
<212> DNA
<213> human
<400> 26
ggaacacaca gatctacaag g 21
<210> 27
<211> 21
<212> DNA
<213> human
<400> 27
gaacacacag atctacaagg c 21
<210> 28
<211> 21
<212> DNA
<213> human
<400> 28
ttcttacttc cctaatgaag t 21
<210> 29
<211> 21
<212> DNA
<213> human
<400> 29
aagttaagaa cctgaatata a 21
<210> 30
<211> 21
<212> DNA
<213> human
<400> 30
aacctgaata taaatttgtg t 21
<210> 31
<211> 21
<212> DNA
<213> human
<400> 31
acctgaatat aaatttgtgt t 21
<210> 32
<211> 21
<212> DNA
<213> human
<400> 32
aagcgttgat ggattaatta a 21
<210> 33
<211> 21
<212> DNA
<213> human
<400> 33
agcgttgatg gattaattaa a 21
<210> 34
<211> 21
<212> DNA
<213> human
<400> 34
gggtctggtg ggcatcatta t 21
<210> 35
<211> 21
<212> DNA
<213> human
<400> 35
ggtctggtgg gcatcattat t 21
<210> 36
<211> 21
<212> DNA
<213> human
<400> 36
gcatcattat tgggaccatc t 21
<210> 37
<211> 21
<212> DNA
<213> human
<400> 37
gcacatggag gtgatggtgt t 21
<210> 38
<211> 21
<212> DNA
<213> human
<400> 38
ggaggtgatg gtgtttctta g 21
<210> 39
<211> 21
<212> DNA
<213> human
<400> 39
gagaagatca ctgaagaaac t 21
<210> 40
<211> 21
<212> DNA
<213> human
<400> 40
gctttaatgg ctttacaaag c 21
<210> 41
<211> 21
<212> DNA
<213> human
<400> 41
ggctttacaa agctggcaat a 21
<210> 42
<211> 21
<212> DNA
<213> human
<400> 42
gctttacaaa gctggcaata t 21
<210> 43
<211> 21
<212> DNA
<213> human
<400> 43
gctccgtact ctaacatcta g 21
<210> 44
<211> 21
<212> DNA
<213> human
<400> 44
gatgaccaca ttcaaggaag a 21
<210> 45
<211> 21
<212> DNA
<213> human
<400> 45
gaccacattc aaggaagaac t 21
<210> 46
<211> 21
<212> DNA
<213> human
<400> 46
gctttcctgc ttggcagtta t 21
<210> 47
<211> 21
<212> DNA
<213> human
<400> 47
ggcagttatt cttccacaag a 21
<210> 48
<211> 21
<212> DNA
<213> human
<400> 48
gcagttattc ttccacaaga g 21
<210> 49
<211> 21
<212> DNA
<213> human
<400> 49
gcgtaagtct gagtgtcatt t 21
<210> 50
<211> 21
<212> DNA
<213> human
<400> 50
gacaatttaa ggaagaatct t 21
<210> 51
<211> 21
<212> DNA
<213> human
<400> 51
ggccatagtt ctccctgatt g 21
<210> 52
<211> 21
<212> DNA
<213> human
<400> 52
gccatagttc tccctgattg a 21
<210> 53
<211> 21
<212> DNA
<213> human
<400> 53
gcagatgacc acattcaagg a 21
<210> 54
<211> 21
<212> DNA
<213> human
<400> 54
gatgaccaca ttcaaggaag a 21
<210> 55
<211> 21
<212> DNA
<213> human
<400> 55
gaccacattc aaggaagaac c 21
<210> 56
<211> 21
<212> DNA
<213> human
<400> 56
gctttgtcag gaccaggttg t 21
<210> 57
<211> 21
<212> DNA
<213> human
<400> 57
gaccaggttg ttactggttc a 21
<210> 58
<211> 21
<212> DNA
<213> human
<400> 58
gaagcctcac agctttgatg g 21
<210> 59
<211> 21
<212> DNA
<213> human
<400> 59
gatggcagtg cctcatcttc a 21
<210> 60
<211> 21
<212> DNA
<213> human
<400> 60
ggcagtgcct catcttcaac t 21
<210> 61
<211> 21
<212> DNA
<213> human
<400> 61
gcagcaggat aagtatgagt g 21
<210> 62
<211> 21
<212> DNA
<213> human
<400> 62
gcaggataag tatgagtgtc a 21
<210> 63
<211> 21
<212> DNA
<213> human
<400> 63
ggttcctgca cagagacatc t 21
<210> 64
<211> 21
<212> DNA
<213> human
<400> 64
gcacagagac atctataacc a 21
<210> 65
<211> 21
<212> DNA
<213> human
<400> 65
gagacatcta taaccaagag g 21
<210> 66
<211> 21
<212> DNA
<213> human
<400> 66
gagtactgga acagccagaa g 21
<210> 67
<211> 21
<212> DNA
<213> human
<400> 67
gctttcctgc ttggctctta t 21
<210> 68
<211> 21
<212> DNA
<213> human
<400> 68
ggctcttatt cttccacaag a 21
<210> 69
<211> 21
<212> DNA
<213> human
<400> 69
gctcttattc ttccacaaga g 21
<210> 70
<211> 21
<212> DNA
<213> human
<400> 70
ggatgtggaa cccacagata c 21
<210> 71
<211> 21
<212> DNA
<213> human
<400> 71
gatgtggaac ccacagatac a 21
<210> 72
<211> 21
<212> DNA
<213> human
<400> 72
gtggaaccca cagatacaga g 21
<210> 73
<211> 21
<212> DNA
<213> human
<400> 73
ggaacccaca gatacagaga g 21
<210> 74
<211> 21
<212> DNA
<213> human
<400> 74
gagccaactg tattgcctat t 21
<210> 75
<211> 21
<212> DNA
<213> human
<400> 75
agccaactgt attgcctatt t 21
<210> 76
<211> 21
<212> DNA
<213> human
<400> 76
gccaactgta ttgcctattt g 21
<210> 77
<211> 21
<212> DNA
<213> human
<400> 77
gggtagcaac tgtcaccttg a 21
<210> 78
<211> 21
<212> DNA
<213> human
<400> 78
ggatttcgtg ttccagttta a 21
<210> 79
<211> 21
<212> DNA
<213> human
<400> 79
gcatgtgcta cttcaccaac g 21
<210> 80
<211> 21
<212> DNA
<213> human
<400> 80
gcgtcttgtg accagataca t 21
<210> 81
<211> 21
<212> DNA
<213> human
<400> 81
gcttatgcct gcccagaatt c 21
<210> 82
<211> 21
<212> DNA
<213> human
<400> 82
gcaggaaatc actgcagaat g 21
<210> 83
<211> 21
<212> DNA
<213> human
<400> 83
gctcagtgca ttggccttag a 21
<210> 84
<211> 21
<212> DNA
<213> human
<400> 84
ggtgagtgct gtgtaaataa g 21
<210> 85
<211> 21
<212> DNA
<213> human
<400> 85
gacatatata gtgatccttg g 21
<210> 86
<211> 21
<212> DNA
<213> human
<400> 86
ggaaagtcac atcgatcaag a 21
<210> 87
<211> 21
<212> DNA
<213> human
<400> 87
gctcacagtc atcaattata g 21
<210> 88
<211> 21
<212> DNA
<213> human
<400> 88
gccctgaaga cagaatgttc c 21
<210> 89
<211> 21
<212> DNA
<213> human
<400> 89
gcggaccatg tgtcaactta t 21
<210> 90
<211> 21
<212> DNA
<213> human
<400> 90
ggaccatgtg tcaacttatg c 21
<210> 91
<211> 21
<212> DNA
<213> human
<400> 91
gcgtttgtac agacgcatag a 21
<210> 92
<211> 21
<212> DNA
<213> human
<400> 92
ggctggctaa cattgctata t 21
<210> 93
<211> 21
<212> DNA
<213> human
<400> 93
gctggctaac attgctatat t 21
<210> 94
<211> 21
<212> DNA
<213> human
<400> 94
ggaccaggtc acatgtgaat a 21
<210> 95
<211> 21
<212> DNA
<213> human
<400> 95
ggaaaggtct gaggatattg a 21
<210> 96
<211> 21
<212> DNA
<213> human
<400> 96
ggcagattag gattccattc a 21
<210> 97
<211> 21
<212> DNA
<213> human
<400> 97
gcctgatagg acccatattc c 21
<210> 98
<211> 21
<212> DNA
<213> human
<400> 98
gcatccaata gacgtcattt g 21
<210> 99
<211> 21
<212> DNA
<213> human
<400> 99
gcgtcactgg cacagatata a 21
<210> 100
<211> 21
<212> DNA
<213> human
<400> 100
gctgtcacat aataagctaa g 21
<210> 101
<211> 21
<212> DNA
<213> human
<400> 101
gctaaggaag acagtatata g 21
<210> 102
<211> 21
<212> DNA
<213> human
<400> 102
gggatttcta aggaaggatg c 21
<210> 103
<211> 21
<212> DNA
<213> human
<400> 103
ggagttgaag agcagagatt c 21
<210> 104
<211> 21
<212> DNA
<213> human
<400> 104
gccagtgaac acttaccata g 21
<210> 105
<211> 21
<212> DNA
<213> human
<400> 105
gcttctctga agtctcattg a 21
<210> 106
<211> 21
<212> DNA
<213> human
<400> 106
ggctgcaact aacttcaaat a 21
<210> 107
<211> 21
<212> DNA
<213> human
<400> 107
ggatggattt gattatgatc c 21
<210> 108
<211> 21
<212> DNA
<213> human
<400> 108
ggaccttgga acaatggatt g 21
<210> 109
<211> 21
<212> DNA
<213> human
<400> 109
gctaattctt gctgaacttc t 21
<210> 110
<211> 21
<212> DNA
<213> human
<400> 110
gctgaacttc ttcatgtatg t 21
<210> 111
<211> 21
<212> DNA
<213> human
<400> 111
gcctcatctc tttgttctaa a 21
<210> 112
<211> 21
<212> DNA
<213> human
<400> 112
gctctggaga agatatattt g 21
<210> 113
<211> 21
<212> DNA
<213> human
<400> 113
gctcttgagg gaactaatag a 21
<210> 114
<211> 21
<212> DNA
<213> human
<400> 114
gggacggcat taatgtattc a 21
<210> 115
<211> 21
<212> DNA
<213> human
<400> 115
ggacaaacat gcaaactata g 21
<210> 116
<211> 21
<212> DNA
<213> human
<400> 116
gcagcaacca gctaccattc t 21
<210> 117
<211> 21
<212> DNA
<213> human
<400> 117
gcagttctgt tgccactctc t 21
<210> 118
<211> 21
<212> DNA
<213> human
<400> 118
gggagagttc atccaggaaa t 21
<210> 119
<211> 21
<212> DNA
<213> human
<400> 119
ggagagttca tccaggaaat t 21
<210> 120
<211> 21
<212> DNA
<213> human
<400> 120
gagagttcat ccaggaaatt a 21
<210> 121
<211> 21
<212> DNA
<213> human
<400> 121
gcctgtcaaa gagagagagc a 21
<210> 122
<211> 21
<212> DNA
<213> human
<400> 122
gctcagcttc gtactgagtt c 21
<210> 123
<211> 21
<212> DNA
<213> human
<400> 123
gcttcacaga actacagaga g 21
<210> 124
<211> 21
<212> DNA
<213> human
<400> 124
gcatctactg gacaaagtat t 21
<210> 125
<211> 21
<212> DNA
<213> human
<400> 125
ggctgaatta cccatgcttt a 21
<210> 126
<211> 21
<212> DNA
<213> human
<400> 126
gctgaattac ccatgcttta a 21
<210> 127
<211> 21
<212> DNA
<213> human
<400> 127
gggttggttt atccaggaat a 21
<210> 128
<211> 21
<212> DNA
<213> human
<400> 128
ggatcagaag agaagccaac g 21
<210> 129
<211> 21
<212> DNA
<213> human
<400> 129
ggttcaccat ccaggtgttc a 21
<210> 130
<211> 21
<212> DNA
<213> human
<400> 130
gctctcttct ctggaactaa c 21
<210> 131
<211> 21
<212> DNA
<213> human
<400> 131
gctagagtga ctccatctta a 21
<210> 132
<211> 21
<212> DNA
<213> human
<400> 132
gctgaccacc aattataatt g 21
<210> 133
<211> 21
<212> DNA
<213> human
<400> 133
gcagaatatt taaggccata c 21
<210> 134
<211> 21
<212> DNA
<213> human
<400> 134
gcccacttaa aggcagcatt a 21
<210> 135
<211> 21
<212> DNA
<213> human
<400> 135
ggtcatcaat accactgtta a 21
<210> 136
<211> 21
<212> DNA
<213> human
<400> 136
gcattcctcc ttctcctttc t 21
<210> 137
<211> 21
<212> DNA
<213> human
<400> 137
ggaggaactt tgtgaacatt c 21
<210> 138
<211> 21
<212> DNA
<213> human
<400> 138
gctgtaagaa ggatgctttc a 21
<210> 139
<211> 21
<212> DNA
<213> human
<400> 139
gctgcaggca ggattgtttc a 21
<210> 140
<211> 21
<212> DNA
<213> human
<400> 140
gcagttcgag gtcaagtttg a 21
<210> 141
<211> 21
<212> DNA
<213> human
<400> 141
gccaattagc tgagaagaat t 21
<210> 142
<211> 21
<212> DNA
<213> human
<400> 142
gcaggtttac agtgtatatg t 21
<210> 143
<211> 21
<212> DNA
<213> human
<400> 143
gcctacagag actagagtag g 21
<210> 144
<211> 21
<212> DNA
<213> human
<400> 144
gcagttgggt accttccatt c 21
<210> 145
<211> 21
<212> DNA
<213> human
<400> 145
gcaactcagg tgcatgatac a 21
<210> 146
<211> 21
<212> DNA
<213> human
<400> 146
gcatggcgct ggtacgtaaa t 21
<210> 147
<211> 19
<212> DNA
<213> human
<400> 147
gcctcgagtt tgagagcta 19
<210> 148
<211> 19
<212> DNA
<213> human
<400> 148
agacattctg gatgagtta 19
<210> 149
<211> 19
<212> DNA
<213> human
<400> 149
gggtctgtta cccaaagaa 19
<210> 150
<211> 19
<212> DNA
<213> human
<400> 150
ggtctgttac ccaaagaat 19
<210> 151
<211> 19
<212> DNA
<213> human
<400> 151
ggaaggaagc ggacgctca 19
<210> 152
<211> 19
<212> DNA
<213> human
<400> 152
ggaggcagta cttctgata 19
<210> 153
<211> 19
<212> DNA
<213> human
<400> 153
cgctctagag ctcagctga 19
<210> 154
<211> 19
<212> DNA
<213> human
<400> 154
ccaccacctc aaccaataa 19
<210> 155
<211> 19
<212> DNA
<213> human
<400> 155
atttcaagaa gtcgatcaa 19
<210> 156
<211> 19
<212> DNA
<213> human
<400> 156
gaagatctga ttaccttca 19
<210> 157
<211> 21
<212> DNA
<213> human
<400> 157
ggacactggt tcaacacctg t 21
<210> 158
<211> 21
<212> DNA
<213> human
<400> 158
ggttcaacac ctgtgacttc a 21
<210> 159
<211> 21
<212> DNA
<213> human
<400> 159
acctgtgact tcatgtgtgc g 21
<210> 160
<211> 21
<212> DNA
<213> human
<400> 160
gctggacgtg accatcatgt a 21
<210> 161
<211> 21
<212> DNA
<213> human
<400> 161
ggacgtgacc atcatgtaca a 21
<210> 162
<211> 21
<212> DNA
<213> human
<400> 162
gacgtgacca tcatgtacaa g 21
<210> 163
<211> 21
<212> DNA
<213> human
<400> 163
acgtgaccat catgtacaag g 21
<210> 164
<211> 21
<212> DNA
<213> human
<400> 164
acgctatacc atctacctgg g 21
<210> 165
<211> 21
<212> DNA
<213> human
<400> 165
gcctctatga cgacatcgag t 21
<210> 166
<211> 21
<212> DNA
<213> human
<400> 166
gacatcgagt gcttccttat g 21
<210> 167
<211> 253
<212> DNA
<213> Artificial sequence
<400> 167
gagggcctat ttcccatgat tccttcatat ttgcatatac gatacaaggc tgttagagag 60
ataattggaa ttaatttgac tgtaaacaca aagatattag tacaaaatac gtgacgtaga 120
aagtaataat ttcttgggta gtttgcagtt ttaaaattat gttttaaaat ggactatcat 180
atgcttaccg taacttgaaa gtatttcgat ttcttggctt tatatatctt gtggaaagga 240
cgctagcgcc acc 253
<210> 168
<211> 9
<212> DNA
<213> Artificial sequence
<400> 168
ttcaagaga 9
<210> 169
<211> 686
<212> DNA
<213> Artificial sequence
<400> 169
gagggcctat ttcccatgat tccttcatat ttgcatatac gatacaaggc tgttagagag 60
ataattggaa ttaatttgac tgtaaacaca aagatattag tacaaaatac gtgacgtaga 120
aagtaataat ttcttgggta gtttgcagtt ttaaaattat gttttaaaat ggactatcat 180
atgcttaccg taacttgaaa gtatttcgat ttcttggctt tatatatctt gtggaaagga 240
ctttaccact ccctatcagt gatagagaaa agtgaaagtc gagtttacca ctccctatca 300
gtgatagaga aaagtgaaag tcgagtttac cactccctat cagtgataga gaaaagtgaa 360
agtcgagttt accactccct atcagtgata gagaaaagtg aaagtcgagt ttaccactcc 420
ctatcagtga tagagaaaag tgaaagtcga gtttaccact ccctatcagt gatagagaaa 480
agtgaaagtc gagtttacca ctccctatca gtgatagaga aaagtgaaag tcgagctcgg 540
tacccgggtc gaggtaggcg tgtacggtgg gaggcctata taagcagagc tcgtttagtg 600
aaccgtcaga tcgcctggag acgccatcca cgctgttttg acctccatag aagacaccgg 660
gaccgatcca gcctgctagc gccacc 686
<210> 170
<211> 119
<212> DNA
<213> Artificial sequence
<400> 170
gaggcttcag tactttacag aatcgttgcc tgcacatctt ggaaacactt gctgggatta 60
cttcttcagg ttaacccaac agaaggctaa agaaggtata ttgctgttga cagtgagcg 119
<210> 171
<211> 19
<212> DNA
<213> Artificial sequence
<400> 171
tagtgaagcc acagatgta 19
<210> 172
<211> 119
<212> DNA
<213> Artificial sequence
<400> 172
tgcctactgc ctcggacttc aaggggctac tttaggagca attatcttgt ttactaaaac 60
tgaatacctt gctatctctt tgatacattt ttacaaagct gaattaaaat ggtataaat 119
<210> 173
<211> 22
<212> DNA
<213> Artificial sequence
<400> 173
ccatagctca gtctggtcta tc 22
<210> 174
<211> 22
<212> DNA
<213> Artificial sequence
<400> 174
tcaggatgat ctggacgaag ag 22
<210> 175
<211> 20
<212> DNA
<213> Artificial sequence
<400> 175
ccggtcctgg actttgtctc 20
<210> 176
<211> 20
<212> DNA
<213> Artificial sequence
<400> 176
ctcgacatcg gcaaggtgtg 20
<210> 177
<211> 20
<212> DNA
<213> Artificial sequence
<400> 177
cgcattggag tcgctttaac 20
<210> 178
<211> 24
<212> DNA
<213> Artificial sequence
<400> 178
cgagctgcaa gaactcttcc tcac 24
<210> 179
<211> 23
<212> DNA
<213> Artificial sequence
<400> 179
cacggcactt acctgtgttc tgg 23
<210> 180
<211> 23
<212> DNA
<213> Artificial sequence
<400> 180
cagtacaggc atccctgtga aag 23
<210> 181
<211> 590
<212> DNA
<213> Artificial sequence
<400> 181
cccctctccc tccccccccc ctaacgttac tggccgaagc cgcttggaat aaggccggtg 60
tgcgtttgtc tatatgttat tttccaccat attgccgtct tttggcaatg tgagggcccg 120
gaaacctggc cctgtcttct tgacgagcat tcctaggggt ctttcccctc tcgccaaagg 180
aatgcaaggt ctgttgaatg tcgtgaagga agcagttcct ctggaagctt cttgaagaca 240
aacaacgtct gtagcgaccc tttgcaggca gcggaacccc ccacctggcg acaggtgcct 300
ctgcggccaa aagccacgtg tataagatac acctgcaaag gcggcacaac cccagtgcca 360
cgttgtgagt tggatagttg tggaaagagt caaatggctc tcctcaagcg tattcaacaa 420
ggggctgaag gatgcccaga aggtacccca ttgtatggga tctgatctgg ggcctcggtg 480
cacatgcttt acatgtgttt agtcgaggtt aaaaaaacgt ctaggccccc cgaaccacgg 540
ggacgtggtt ttcctttgaa aaacacgatg ataatatggc cacaaccatg 590
<210> 182
<211> 57
<212> DNA
<213> Artificial sequence
<400> 182
atggagttcg gcctgagctg ggtgttcctg gtggccctgc tgaggggcgt gcagtgc 57
<210> 183
<211> 66
<212> DNA
<213> Artificial sequence
<400> 183
atggacatga gggtgcccgc ccagctgctg ggcctgctgc tgctgtggtt ccccggcagc 60
aggtgc 66
<210> 184
<211> 60
<212> DNA
<213> Artificial sequence
<400> 184
atgtacagga tgcaactcct gtcttgcatt gcactaagtc ttgcacttgt cacgaattcg 60
<210> 185
<211> 23
<212> DNA
<213> Artificial sequence
<400> 185
cgcgagcaca gctaaggcca cgg 23
<210> 186
<211> 23
<212> DNA
<213> Artificial sequence
<400> 186
actctctctt tctggcctgg agg 23
<210> 187
<211> 23
<212> DNA
<213> Artificial sequence
<400> 187
acccagcagg gcgtggagcc agg 23
<210> 188
<211> 23
<212> DNA
<213> Artificial sequence
<400> 188
gtcagagccc caaggtaaaa agg 23
Claims (21)
1. A pluripotent stem cell or a derivative thereof comprising an expression sequence for an IL-1 blocker,
the IL-1 blocker is an IL-1 receptor antagonist and/or an IL-1 antibody;
the expression sequence of the IL-1 blocker is preferably inserted into the genome of the pluripotent stem cell or a derivative thereof.
2. A pluripotent stem cell or a derivative thereof comprising an expression sequence of an IL-1 blocker,
the IL-1 blocker is an IL-1 receptor antagonist and/or an IL-1 antibody;
the expression sequence of the IL-1 blocker is preferably inserted in the genome of the pluripotent stem cell or the derivative thereof;
the B2M gene and/or CIITA gene of the genome of the pluripotent stem cell or the derivative thereof is knocked out.
3. A pluripotent stem cell or a derivative thereof comprising an expression sequence for an IL-1 blocker,
the IL-1 blocker is an IL-1 receptor antagonist and/or an IL-1 antibody;
the expression sequence of the IL-1 blocker is preferably inserted in the genome of the pluripotent stem cell or the derivative thereof;
the pluripotent stem cells or the derivatives thereof also comprise an immune compatible molecule expression sequence, and the immune compatible molecule is used for regulating and controlling the expression of genes related to immune response in the pluripotent stem cells or the derivatives thereof; the immune compatible molecule expression sequence is preferably inserted in the genome of the pluripotent stem cell or a derivative thereof.
4. A pluripotent stem cell or a derivative thereof comprising an expression sequence for an IL-1 blocker,
the IL-1 blocker is an IL-1 receptor antagonist and/or an IL-1 antibody;
the expression sequence of the IL-1 blocker is preferably inserted in the genome of the pluripotent stem cell or the derivative thereof;
the pluripotent stem cells or the derivatives thereof also comprise an immune compatible molecule expression sequence, and the immune compatible molecule is used for regulating and controlling the expression of genes related to immune response in the pluripotent stem cells or the derivatives thereof; the immune compatible molecule expression sequence is preferably inserted into the genome of the pluripotent stem cell or a derivative thereof;
the pluripotent stem cell or the derivative thereof further comprises an inducible gene expression system; the inducible gene expression system is preferably inserted into the genome of the pluripotent stem cell or a derivative thereof.
5. The pluripotent stem cell or the derivative thereof according to claim 4, wherein the inducible gene expression system is at least one of a Tet-Off system and a dimer inducible expression system.
6. The pluripotent stem cell or derivative thereof of claim 3 or 4, wherein the immune-compatible molecule comprises one or more of:
(I) immune tolerance-related genes including CD47 or HLA-G;
(II) HLA-C molecules comprising HLA-C alleles in a proportion of more than 90% in total in the population, or fusion protein genes consisting of more than 90% of HLA-C alleles and B2M;
(III) shRNA and/or shRNA-miR targeting the gene associated with the immune response.
7. The pluripotent stem cell or the derivative thereof according to claim 3 or 4, wherein the gene associated with the immune response comprises:
major histocompatibility complex genes including at least one of HLA-A, HLA-B, HLA-C, HLA-DRA, HLA-DRB1, HLA-DRB3, HLA-DRB4, HLA-DRB5, HLA-DQA1, HLA-DQB1, HLA-DPA1, and HLA-DPB 1;
(II) major histocompatibility complex related genes comprising at least one of B2M and CIITA.
8. The pluripotent stem cell or the derivative thereof according to claim 6,
the target sequence of the shRNA and/or shRNA-miR targeting B2M is selected from one of SEQ ID NO. 6-SEQ ID NO. 8;
the target sequence of the shRNA and/or shRNA-miR of the targeting CIITA is selected from one of SEQ ID NO. 9-SEQ ID NO. 18;
the target sequence of the shRNA and/or shRNA-miR of the target HLA-A is selected from one of SEQ ID NO. 19-SEQ ID NO. 21;
the target sequence of the shRNA and/or shRNA-miR of the target HLA-B is selected from one of SEQ ID NO. 22-SEQ ID NO. 27;
the target sequence of the target HLA-C shRNA and/or shRNA-miR is selected from one of SEQ ID NO. 28-SEQ ID NO. 33;
the target sequence of the shRNA and/or shRNA-miR of the target HLA-DRA is selected from one of SEQ ID NO. 34-SEQ ID NO. 43;
the target sequence of the shRNA and/or shRNA-miR of the target HLA-DRB1 is selected from one of SEQ ID NO. 44-SEQ ID NO. 48;
the target sequence of the shRNA and/or shRNA-miR of the target HLA-DRB3 is selected from one of SEQ ID NO. 49-SEQ ID NO. 50;
the target sequence of the shRNA and/or shRNA-miR of the target HLA-DRB4 is selected from one of SEQ ID NO. 51-SEQ ID NO. 60;
the target sequence of the shRNA and/or shRNA-miR of the target HLA-DRB5 is selected from one of SEQ ID NO. 61-SEQ ID NO. 69;
the target sequence of the shRNA and/or shRNA-miR of the target HLA-DQA1 is selected from one of SEQ ID NO. 70-SEQ ID NO. 76;
the target sequence of the shRNA and/or shRNA-miR of the target HLA-DQB1 is selected from one of SEQ ID NO. 77-SEQ ID NO. 86;
the target sequence of the shRNA and/or shRNA-miR of the target HLA-DPA1 is selected from one of SEQ ID NO. 87-SEQ ID NO. 96;
the target sequence of the shRNA and/or shRNA-miR of the target HLA-DPB1 is selected from one of SEQ ID NO. 97-SEQ ID NO. 106.
9. The pluripotent stem cell or the derivative thereof according to claim 3 or 4, wherein at least one of an shRNA processing complex-associated gene, an miRNA processing complex-associated gene, and an anti-interferon effector molecule is further introduced into the genome of the pluripotent stem cell or the derivative thereof.
10. The pluripotent stem cell or the derivative thereof according to claim 9, wherein the shRNA-processing complex-associated gene or miRNA-processing complex-associated gene comprises at least one of Drosha, Ago1, Ago2, Dicer1, Exportin-5, TRBP (TARBP2), PACT (PRKRA), DGCR 8; the anti-interferon effector molecule is preferably shRNA and/or shRNA-miR targeting at least one of PKR, 2-5As, IRF-3 and IRF-7.
11. The pluripotent stem cell or the derivative thereof according to claim 10,
the target sequence of the shRNA and/or shRNA-miR of the target PKR is selected from one of SEQ ID NO. 107-SEQ ID NO. 116;
the target sequence of the shRNA and/or shRNA-miR targeting 2-5As is selected from one of SEQ ID NO. 117-SEQ ID NO. 146;
the target sequence of the shRNA and/or shRNA-miR of the targeted IRF-3 is selected from one of SEQ ID NO. 147-SEQ ID NO. 156;
the target sequence of the IRF-7-targeting shRNA and/or shRNA-miR is selected from one of SEQ ID NO. 157-SEQ ID NO. 166.
12. The pluripotent stem cell or the derivative thereof according to claim 6 or 9,
the shRNA expression framework is as follows: the gene sequence sequentially comprises an shRNA target sequence, a stem-loop sequence, a reverse complementary sequence of the shRNA target sequence and Poly T from 5 'to 3';
wherein the shRNA target sequence, the stem-loop sequence and the reverse complementary sequence of the shRNA target sequence form a hairpin structure; poly T is a transcription terminator of RNA polymerase III;
shRNA-miR expression framework: replacing a target sequence in the microRNA-30 or microRNA-155 with a shRNA-miR target sequence to obtain the target sequence.
13. The pluripotent stem cell or the derivative thereof according to claim 12, wherein the stem-loop sequence in the shRNA expression framework is 3 to 9 bases in length; the length of the Poly T is 5-6 bases.
14. The pluripotent stem cell or the derivative thereof according to any one of claims 1 to 4, wherein the IL-1 blocker expression sequence, the immune-compatible molecule expression sequence or the inducible gene expression system is inserted into a safe site in the genome of the pluripotent stem cell or the derivative thereof.
15. The pluripotent stem cell or the derivative thereof of claim 14, wherein the genomic safety site comprises one or more of an AAVS1 safety site, an eGSH safety site, and an H11 safety site.
16. The pluripotent stem cell or the derivative thereof according to any one of claims 1 to 4, wherein the pluripotent stem cell comprises an embryonic stem cell, an embryonic germ cell, an embryonic carcinoma cell, or an induced pluripotent stem cell.
17. The pluripotent stem cell or the derivative thereof according to any one of claims 1 to 4, wherein the derivative of the pluripotent stem cell comprises an adult stem cell, each germ layer cell or tissue into which the pluripotent stem cell is differentiated;
the adult stem cells include mesenchymal stem cells or neural stem cells.
18. The pluripotent stem cell or the derivative thereof according to any one of claims 1 to 4, wherein the heavy chain and the light chain of the IL-1 antibody:
(I) the heavy chain sequence is shown as SEQ ID NO.1, and the light chain sequence is shown as SEQ ID NO. 2;
or (II) the heavy chain sequence is shown as SEQ ID NO.3, and the light chain sequence is shown as SEQ ID NO. 4.
19. The pluripotent stem cells or the derivative thereof according to any one of claims 1 to 4, wherein the IL-1 receptor antagonist is IL-1 ra.
20. Use of the pluripotent stem cells or derivatives thereof according to any one of claims 1 to 19 in the preparation of a medicament for the treatment of rheumatoid arthritis.
21. A formulation comprising the pluripotent stem cells or derivatives thereof of any of claims 1 to 19.
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Citations (3)
Publication number | Priority date | Publication date | Assignee | Title |
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US20040071666A1 (en) * | 2002-05-24 | 2004-04-15 | The Regents Of The University Of Michigan | Compositions and methods related to graft-versus-host disease |
WO2016032169A1 (en) * | 2014-08-25 | 2016-03-03 | 가톨릭대학교 산학협력단 | Method for manufacturing mesenchymal stem cells retaining enhanced ability to produce interleukin-1 receptor antagonist |
CN108368520A (en) * | 2015-11-04 | 2018-08-03 | 菲特治疗公司 | The genome project of pluripotent cell is transformed |
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Patent Citations (3)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
US20040071666A1 (en) * | 2002-05-24 | 2004-04-15 | The Regents Of The University Of Michigan | Compositions and methods related to graft-versus-host disease |
WO2016032169A1 (en) * | 2014-08-25 | 2016-03-03 | 가톨릭대학교 산학협력단 | Method for manufacturing mesenchymal stem cells retaining enhanced ability to produce interleukin-1 receptor antagonist |
CN108368520A (en) * | 2015-11-04 | 2018-08-03 | 菲特治疗公司 | The genome project of pluripotent cell is transformed |
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