CN113990398A - Method and device for processing genome integration database platform - Google Patents
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Abstract
The invention discloses a processing method and a processing device for a genome integration database platform. Wherein, the method comprises the following steps: establishing a genome integration database platform; packaging the genome integration database platform according to the running environment required by the genome integration database platform to generate a target image file; and deploying the target image file to a target server. The method solves the technical problems that the visualization operation requirements of the genome data analysis results are more and more, and the visualization operation requirements cannot be met in the related technology.
Description
Technical Field
The invention relates to the technical field of genome data analysis, in particular to a method and a device for processing a genome integration database platform.
Background
With the continuous development of sequencing technology and biological information analysis, the demand of visualization operation of the analysis result of genome data is increasing. However, in the prior art, genomic data analysis is usually focused on, for example, homologous gene search, multiple sequence comparison, evolutionary tree construction, and the like, and these analysis means have low visualization degree and have strict requirements on the application environment and the confidence level of an operator, and still cannot meet the requirements of visualization operation.
In view of the above problems, no effective solution has been proposed.
Disclosure of Invention
The embodiment of the invention provides a method and a device for processing a genome integration database platform, which are used for at least solving the technical problems that the visualization operation requirements of genome data analysis results are more and the visualization operation requirements cannot be met in the related technology.
According to an aspect of the embodiments of the present invention, there is provided a method for processing a genome integration database platform, including: establishing a genome integration database platform; packaging the genome integration database platform according to the running environment required by the genome integration database platform to generate a target image file; and deploying the target image file to a target server.
Optionally, establishing a genome integration database platform comprising: the genome integration database platform is constructed based on a front-end and back-end separation mode, wherein the back end of the genome integration database platform is used for acquiring genome data in a database and providing a preset type interface for returning the genome data, and the front end of the genome integration database platform is used for rendering and displaying a page according to the data returned by the back end interface.
Optionally, the rear end of the genome integration database platform includes a database and a preset type interface, the front end of the genome integration database platform includes a display page, and the genome integration database platform is constructed based on a front-end and rear-end separation method, including: constructing the database, wherein the database adopts a non-relational MongoDB database; constructing the preset type interface, wherein the preset type interface is developed by adopting a first preset framework; and constructing the display page, wherein the display page is developed in a component mode by adopting a second preset frame.
Optionally, after building the database, the method further comprises: processing the genome data by writing a script, importing the genome data into the database, and establishing an index for a field to be queried.
Optionally, the preset type interface includes at least one of: the data interface is used for acquiring the genome data from the database according to the request parameters, inquiring, sorting and paging the genome data based on the genome data, and returning the genome data in a JSON format; the task interface is used for executing a background command, acquiring a program output result and returning the genome data in the JSON format; the file type interface is used for returning the file in a streaming mode according to the request path and the request header; and the user class interface is used for user login or user registration.
Optionally, the assembly comprises at least one of: the table type display component is used for performing table display, query, sorting, screening, paging and data export according to different application program interfaces; the graph type display component is used for displaying interactive graphs based on a graph library; and the tool type display component is used for displaying based on the online analysis tool.
Optionally, the generating a target image file by encapsulating the genome integration database platform according to the running environment required by the genome integration database platform includes: and packaging the running environment required by the genome integration database platform and the genome integration database platform by using a Docker mirror image to obtain the target mirror image file.
According to another aspect of the embodiments of the present invention, there is also provided a processing apparatus of a genome integration database platform, including: the establishment module is used for establishing a genome integration database platform; the generating module is used for packaging the genome integration database platform according to the running environment required by the genome integration database platform to generate a target image file; and the deployment module is used for deploying the target image file to a target server.
According to another aspect of the embodiments of the present invention, there is also provided a computer-readable storage medium, where the computer-readable storage medium includes a stored program, where the program, when executed, controls a device on which the computer-readable storage medium is located to perform the processing method of the genome integration database platform according to any one of the above.
According to another aspect of the embodiments of the present invention, there is also provided a processor for executing a program, wherein the program executes to perform the processing method of the genome integration database platform according to any one of the above.
In the embodiment of the invention, a genome integration database platform is established; packaging the genome integration database platform according to the running environment required by the genome integration database platform to generate a target image file; the target image file is deployed to a target server, the genome integration database platform is packaged by adopting a required operation environment through establishing the genome integration database platform, and the target image file obtained after packaging is deployed to the target server, so that the aim of quickly constructing the genome integration database platform is fulfilled, the technical effects of convenience in development and maintenance and convenience in deployment and smooth display effect are achieved, and the technical problems that the visualization operation requirements of genome data analysis results are more and the visualization operation requirements cannot be met in the related technology are solved.
Drawings
The accompanying drawings, which are included to provide a further understanding of the invention and are incorporated in and constitute a part of this application, illustrate embodiment(s) of the invention and together with the description serve to explain the invention without limiting the invention. In the drawings:
FIG. 1 is a flow chart of a method of processing a genome integration database platform according to an embodiment of the present invention;
FIG. 2 is a schematic illustration of a genome integration database platform according to an alternative embodiment of the present invention;
FIG. 3 is a schematic diagram of a processing device of the genome integration database platform according to an embodiment of the present invention.
Detailed Description
In order to make the technical solutions of the present invention better understood, the technical solutions in the embodiments of the present invention will be clearly and completely described below with reference to the drawings in the embodiments of the present invention, and it is obvious that the described embodiments are only a part of the embodiments of the present invention, and not all of the embodiments. All other embodiments, which can be derived by a person skilled in the art from the embodiments given herein without making any creative effort, shall fall within the protection scope of the present invention.
It should be noted that the terms "first," "second," and the like in the description and claims of the present invention and in the drawings described above are used for distinguishing between similar elements and not necessarily for describing a particular sequential or chronological order. It is to be understood that the data so used is interchangeable under appropriate circumstances such that the embodiments of the invention described herein are capable of operation in sequences other than those illustrated or described herein. Furthermore, the terms "comprises," "comprising," and "having," and any variations thereof, are intended to cover a non-exclusive inclusion, such that a process, method, system, article, or apparatus that comprises a list of steps or elements is not necessarily limited to those steps or elements expressly listed, but may include other steps or elements not expressly listed or inherent to such process, method, article, or apparatus.
Example 1
In accordance with an embodiment of the present invention, there is provided an embodiment of a method for processing a genome integration database platform, it is noted that the steps illustrated in the flowchart of the drawings may be performed in a computer system such as a set of computer executable instructions and that, although a logical order is illustrated in the flowchart, in some cases the steps illustrated or described may be performed in an order different than that presented herein.
Fig. 1 is a flowchart of a processing method of a genome integration database platform according to an embodiment of the present invention, as shown in fig. 1, the method including the steps of:
step S102, establishing a genome integration database platform;
step S104, packaging the genome integration database platform according to the running environment required by the genome integration database platform to generate a target image file;
the operation environment required by the genome integration database platform comprises a hardware environment and a software environment, wherein the hardware environment needs to select a proper server according to factors such as the predicted access amount of a website, the security level to be achieved, the expected operation speed of the website, the planning size of the website and the like; the software environment includes but is not limited to an operating system, Web server software, a database and the like, wherein the operating system includes systems such as Windows, Linux and the like; the Web server software Apache, Nginx, etc.; the database includes MongoDB and the like.
And step S106, deploying the target image file to a target server.
The target server may be any server, wherein the types of target servers where the target image file may be deployed include, but are not limited to, a tower server, a rack server, a blade server, and the like.
It should be noted that the implementation steps can be adopted to realize the rapid construction of any genome integration database platform, the website is compatible with a modern browser, and meanwhile, the website has the user authority control function and is compatible with the data display of other omics, and the continuous development of functions and pages can be carried out according to the requirements.
Through the steps, the genome integration database platform can be packaged by adopting the required operating environment through establishing the genome integration database platform, and the target image file obtained after packaging is deployed to the target server, so that the aim of quickly constructing the genome integration database platform is fulfilled, the technical effects of convenience in development and maintenance, convenience in deployment and smooth display effect are achieved, and the technical problems that the visualization operation requirements of genome data analysis results are more and the visualization operation requirements cannot be met in the related technology are solved.
In an alternative embodiment, a genomic integration database platform is established comprising: the method comprises the steps that a genome integration database platform is constructed on the basis of a front-end and back-end separation mode, wherein the back end of the genome integration database platform is used for obtaining genome data in a database and providing a preset type interface for returning the genome data, and the front end of the genome integration database platform is used for rendering and displaying a page according to the data returned by the back end interface.
It should be noted that the front end of the genome integration database platform can adopt an Ant Design Pro framework based on ReactJS to develop a display page in a component manner; the back end of the genome integration database platform can adopt a Python-based DjangRestFramework framework. In addition, a genome integration database platform is developed based on a front-end separation mode and a back-end separation mode, so that the rapid construction of any genome integration database platform can be realized.
In an optional embodiment, the back end of the genome integration database platform includes a database and a preset type interface, the front end of the genome integration database platform includes a display page, and the genome integration database platform is constructed based on a front-end separation method, including: constructing a database, wherein the database adopts a non-relational MongoDB database; constructing a preset type interface, wherein the preset type interface is developed by adopting a first preset framework; and constructing a presentation page, wherein the presentation page is developed in a component mode by adopting a second preset frame.
The database can be set according to the requirements of application scenes, and not only can be a non-relational MongoDB database, but also can be other types of databases, such as Oracle, MySQL and the like; in addition, after the database is constructed, the method further comprises: and processing the genome data by writing a script, importing the processed genome data into a database, and establishing an index for the field to be queried. It should be noted that, the speed of query can be effectively increased by building an index for the field to be queried.
The first preset frame comprises but is not limited to a DjangRestFramework frame, and the preset type interface comprises but is not limited to a data interface and is used for acquiring genome data from a database according to request parameters, inquiring, sequencing and paging the genome data based on the genome data, and returning the genome data in a JSON format; the task interface is used for executing the background command, acquiring a program output result and returning the genome data in the JSON format; the file type interface is used for returning the file in a streaming mode according to the request path and the request header; and the user class interface is used for user login or user registration.
The second predetermined frame includes but is not limited to a djangoRestFramework frame, and the components include but are not limited to: the table type display component is used for performing table display, query, sorting, screening, paging and data export according to different application program interfaces; the graph type display component is used for displaying interactive graphs based on a graph library; and the tool type display component is used for displaying based on the online analysis tool. By means of the implementation mode, the display effect can be greatly enriched, and various application requirements are met.
In an alternative embodiment, the generating the target image file by performing an encapsulation process on the genome integration database platform according to the running environment required by the genome integration database platform includes: and packaging the running environment required by the genome integration database platform and the genome integration database platform by using a Docker mirror image to obtain a target mirror image file. The environment configuration required by the implementation mode is encapsulated through the Docker mirror image, and the deployment can be conveniently and rapidly carried out.
An alternative embodiment of the invention is described in detail below.
FIG. 2 is a schematic diagram of a genome integration database platform according to an alternative embodiment of the present invention, and as shown in FIG. 2, the whole framework adopts a front-end and back-end separation mode, and the back-end framework adopts a Python-based Django RestFramework framework to provide a data return interface by acquiring data stored in a MongoDB database. The front-end framework adopts an Ant Design Pro framework based on ReactJS, the development of the page is carried out in a component mode, and the rendering display of the page is carried out according to data returned by the rear-end interface. In addition, the invention also provides a Docker mirror image encapsulation method of the front-end and back-end frameworks, which can be rapidly deployed on any server.
Alternatively, the genome integration database platform of alternative embodiments of the present invention is largely divided into four sections:
1. building of backend databases
The database adopts a non-relational MongoDB database, processes genome result data by compiling scripts, imports the genome result data into the database, and establishes an index for a field needing to be queried so as to accelerate the query.
2. Development of backend data interfaces
The back end adopts DjangRestFramework frame to develop data interface, which mainly comprises the following interfaces: (1) the data interface acquires data from the database according to the request parameters, can realize the functions of query, sorting, paging and the like, and returns data in a JSON format; (2) the task interface acquires a program output result by executing a background command and returns JSON format data; (3) the file type interface returns the file in a stream mode according to the request path and the request head; (4) the user interface comprises functions of user login, user registration and the like, and performs login authentication in a JWT mode.
3. Development of front-end presentation pages
And the front end adopts an Ant Design Pro framework to develop pages and components. Mainly comprises the following types: (1) the table display component is developed based on the ProTable component, and can realize the functions of table display, inquiry, sorting, screening, paging, data export and the like according to different Application Programming interfaces (API for short); (2) the graph display component is used for displaying interactive graphs based on a bizcharts diagram library; (3) the development of tool components comprises the realization of online analysis tools such as Blast, sequence extraction, gene collinearity analysis, genome collinearity display, path enrichment analysis and the like.
4. Front-end mirror packaging and deployment
The server deployment adopts a mode of Nginx + uWSGI + Django, the required environment is packaged through a Docker mirror image, and the rapid deployment on any server can be realized.
In the above embodiment of the present invention, the development of the genome integration database platform is performed in a front-end and back-end separation manner, and the rapid construction of the genome integration database platform can be realized by combining a modern development framework and a Docker mirror image.
In addition, compared with the prior art, the technical scheme realizes the separation of the front end and the back end, the back end provides a data acquisition interface through a database, and the front end displays the page of the data in a component mode, and has the following advantages: (1) the database website adopts a front-end and back-end separation mode, so that development, upgrading and maintenance are facilitated; (2) an Ant Design Pro framework is adopted as a front-end framework, and development of related functions is carried out in a component mode, so that code maintenance and multiplexing are facilitated; (3) the rear-end interface of the database adopts a DjangoRestFramework frame, combines a MongoDB database, can conveniently provide a standard data interface, and simultaneously combines a Celery module to provide a task interface compatible with a synchronous mode and an asynchronous mode; (4) the required environment configuration is packaged through Docker mirror images, and the deployment is convenient and rapid.
Example 2
According to another aspect of the embodiments of the present invention, there is also provided a processing apparatus of a genome integration database platform, and fig. 3 is a schematic diagram of the processing apparatus of the genome integration database platform according to the embodiments of the present invention, as shown in fig. 3, the processing apparatus of the genome integration database platform includes: a setup module 32, a generation module 34, and a deployment module 36. The processing means of the genomic integration database platform will be described in detail below.
An establishing module 32, configured to establish a genome integration database platform; a generating module 34, connected to the establishing module 32, for performing encapsulation processing on the genome integration database platform according to the operation environment required by the genome integration database platform to generate a target image file; and a deployment module 36, connected to the generation module 34, for deploying the target image file to the target server.
It should be noted that the above modules may be implemented by software or hardware, for example, for the latter, the following may be implemented: the modules can be located in the same processor; and/or the modules are located in different processors in any combination.
In the above embodiment, the processing device of the genome integration database platform can package the genome integration database platform by adopting the required operating environment through establishing the genome integration database platform, and deploy the target image file obtained after the packaging to the target server, thereby achieving the purpose of rapidly constructing the genome integration database platform, achieving the technical effects of convenience in development and maintenance, convenience in deployment and smooth display effect, and further solving the technical problems that the visualization operation requirements of the genome data analysis results are more and the visualization operation requirements cannot be met in the related art.
It should be noted here that the establishing module 32, the generating module 34, and the deploying module 36 correspond to steps S102 to S106 in embodiment 1, and the modules are the same as the examples and application scenarios realized by the corresponding steps, but are not limited to what is disclosed in embodiment 1.
Optionally, the establishing module 32 includes: the construction unit is used for constructing the genome integration database platform based on a front-end and back-end separation mode, wherein the back end of the genome integration database platform is used for acquiring genome data in the database and providing a preset type interface for returning the genome data, and the front end of the genome integration database platform is used for rendering and displaying a page according to the data returned by the back end interface.
Optionally, the rear end of the genome integration database platform includes a database and a preset type interface, the front end of the genome integration database platform includes a display page, and the building unit includes: the first construction subunit is used for constructing a database, wherein the database adopts a non-relational MongoDB database; the second construction subunit is used for constructing the preset type interface, wherein the first preset framework is adopted to develop the preset type interface; and the third construction subunit is used for constructing the display page, wherein the display page is developed in a component mode by adopting a second preset frame.
Optionally, the apparatus further comprises: and the processing module is used for processing the genome data by compiling the script after the database is built, importing the genome data into the database and building an index for the field to be queried.
Optionally, the preset type interface includes at least one of: the data interface is used for acquiring genome data from the database according to the request parameters, inquiring, sorting and paging the genome data based on the genome data, and returning the genome data in the JSON format; the task interface is used for executing the background command, acquiring a program output result and returning the genome data in the JSON format; the file type interface is used for returning the file in a streaming mode according to the request path and the request header; and the user class interface is used for user login or user registration.
Optionally, the above-mentioned components comprise at least one of: the table type display component is used for performing table display, query, sorting, screening, paging and data export according to different application program interfaces; the graph type display component is used for displaying interactive graphs based on a graph library; and the tool type display component is used for displaying based on the online analysis tool.
Optionally, the generating module 34 includes: and the packaging unit is used for packaging the running environment required by the genome integration database platform and the genome integration database platform by adopting a Docker mirror image to obtain a target mirror image file.
Example 3
According to another aspect of the embodiments of the present invention, there is also provided a computer-readable storage medium, which includes a stored program, wherein when the program runs, the apparatus on which the computer-readable storage medium is located is controlled to execute the processing method of the genome integration database platform according to any one of the above.
Optionally, in this embodiment, the computer-readable storage medium may be located in any one of a group of computer terminals in a computer network and/or in any one of a group of mobile terminals, and the computer-readable storage medium includes a stored program.
Optionally, the program when executed controls an apparatus in which the computer-readable storage medium is located to perform the following functions: establishing a genome integration database platform; packaging the genome integration database platform according to the running environment required by the genome integration database platform to generate a target image file; and deploying the target image file to a target server.
Optionally, establishing a genome integration database platform comprising: the method comprises the steps that a genome integration database platform is constructed on the basis of a front-end and back-end separation mode, wherein the back end of the genome integration database platform is used for obtaining genome data in a database and providing a preset type interface for returning the genome data, and the front end of the genome integration database platform is used for rendering and displaying a page according to the data returned by the back end interface.
Optionally, the rear end of the genome integration database platform includes a database and a preset type interface, the front end of the genome integration database platform includes a display page, and the genome integration database platform is constructed based on a front-end separation mode, including: constructing a database, wherein the database adopts a non-relational MongoDB database; constructing a preset type interface, wherein the preset type interface is developed by adopting a first preset framework; and constructing a presentation page, wherein the presentation page is developed in a component mode by adopting a second preset frame.
Optionally, after the database is constructed, the method further includes: and processing the genome data by writing a script, importing the processed genome data into a database, and establishing an index for the field to be queried.
Optionally, the preset type interface includes at least one of: the data interface is used for acquiring genome data from the database according to the request parameters, inquiring, sorting and paging the genome data based on the genome data, and returning the genome data in the JSON format; the task interface is used for executing the background command, acquiring a program output result and returning the genome data in the JSON format; the file type interface is used for returning the file in a streaming mode according to the request path and the request header; and the user class interface is used for user login or user registration.
Optionally, the above-mentioned components comprise at least one of: the table type display component is used for performing table display, query, sorting, screening, paging and data export according to different application program interfaces; the graph type display component is used for displaying interactive graphs based on a chart library; and the tool type display component is used for displaying based on the online analysis tool.
Optionally, the generating of the target image file by encapsulating the genome integration database platform according to the running environment required by the genome integration database platform includes: and packaging the running environment required by the genome integration database platform and the genome integration database platform by using a Docker mirror image to obtain a target mirror image file.
Example 4
According to another aspect of the embodiments of the present invention, there is also provided a processor for executing a program, wherein the program executes a processing method of the genome integration database platform according to any one of the above.
The embodiment of the invention provides equipment, which comprises a processor, a memory and a program which is stored on the memory and can run on the processor, wherein the processor executes the program and realizes the following steps: establishing a genome integration database platform; packaging the genome integration database platform according to the running environment required by the genome integration database platform to generate a target image file; and deploying the target image file to a target server.
Optionally, establishing a genome integration database platform comprising: the method comprises the steps that a genome integration database platform is constructed on the basis of a front-end and back-end separation mode, wherein the back end of the genome integration database platform is used for obtaining genome data in a database and providing a preset type interface for returning the genome data, and the front end of the genome integration database platform is used for rendering and displaying a page according to the data returned by the back end interface.
Optionally, the rear end of the genome integration database platform includes a database and a preset type interface, the front end of the genome integration database platform includes a display page, and the genome integration database platform is constructed based on a front-end separation mode, including: constructing a database, wherein the database adopts a non-relational MongoDB database; constructing a preset type interface, wherein the preset type interface is developed by adopting a first preset framework; and constructing a presentation page, wherein the presentation page is developed in a component mode by adopting a second preset frame.
Optionally, after the database is constructed, the method further includes: and processing the genome data by writing a script, importing the processed genome data into a database, and establishing an index for the field to be queried.
Optionally, the preset type interface includes at least one of: the data interface is used for acquiring genome data from the database according to the request parameters, inquiring, sorting and paging the genome data based on the genome data, and returning the genome data in the JSON format; the task interface is used for executing the background command, acquiring a program output result and returning the genome data in the JSON format; the file type interface is used for returning the file in a streaming mode according to the request path and the request header; and the user class interface is used for user login or user registration.
Optionally, the above-mentioned components comprise at least one of: the table type display component is used for performing table display, query, sorting, screening, paging and data export according to different application program interfaces; the graph type display component is used for displaying interactive graphs based on a graph library; and the tool type display component is used for displaying based on the online analysis tool.
Optionally, the generating of the target image file by encapsulating the genome integration database platform according to the running environment required by the genome integration database platform includes: and packaging the running environment required by the genome integration database platform and the genome integration database platform by using a Docker mirror image to obtain a target mirror image file.
The above-mentioned serial numbers of the embodiments of the present invention are merely for description and do not represent the merits of the embodiments.
In the above embodiments of the present invention, the descriptions of the respective embodiments have respective emphasis, and for parts that are not described in detail in a certain embodiment, reference may be made to related descriptions of other embodiments.
In the embodiments provided in the present application, it should be understood that the disclosed technology can be implemented in other ways. The above-described embodiments of the apparatus are merely illustrative, and for example, the division of the units may be a logical division, and in actual implementation, there may be another division, for example, multiple units or components may be combined or integrated into another system, or some features may be omitted, or not executed. In addition, the shown or discussed mutual coupling or direct coupling or communication connection may be an indirect coupling or communication connection through some interfaces, units or modules, and may be in an electrical or other form.
The units described as separate parts may or may not be physically separate, and parts displayed as units may or may not be physical units, may be located in one place, or may be distributed on a plurality of units. Some or all of the units can be selected according to actual needs to achieve the purpose of the solution of the embodiment.
In addition, functional units in the embodiments of the present invention may be integrated into one processing unit, or each unit may exist alone physically, or two or more units are integrated into one unit. The integrated unit can be realized in a form of hardware, and can also be realized in a form of a software functional unit.
The integrated unit, if implemented in the form of a software functional unit and sold or used as a stand-alone product, may be stored in a computer readable storage medium. Based on such understanding, the technical solution of the present invention may be embodied in the form of a software product, which is stored in a storage medium and includes instructions for causing a computer device (which may be a personal computer, a server, or a network device) to execute all or part of the steps of the method according to the embodiments of the present invention. And the aforementioned storage medium includes: a U-disk, a Read-Only Memory (ROM), a Random Access Memory (RAM), a removable hard disk, a magnetic or optical disk, and other various media capable of storing program codes.
The foregoing is only a preferred embodiment of the present invention, and it should be noted that, for those skilled in the art, various modifications and decorations can be made without departing from the principle of the present invention, and these modifications and decorations should also be regarded as the protection scope of the present invention.
Claims (10)
1. A method for processing a genome integration database platform, comprising:
establishing a genome integration database platform;
packaging the genome integration database platform according to the running environment required by the genome integration database platform to generate a target image file;
and deploying the target image file to a target server.
2. The method of claim 1, wherein establishing a genome integration database platform comprises:
the genome integration database platform is constructed based on a front-end and back-end separation mode, wherein the back end of the genome integration database platform is used for acquiring genome data in a database and providing a preset type interface for returning the genome data, and the front end of the genome integration database platform is used for rendering and displaying a page according to the data returned by the back end interface.
3. The method of claim 2, wherein the back end of the genome integration database platform comprises a database and preset type interface, the front end of the genome integration database platform comprises a display page, and the constructing of the genome integration database platform based on a front-end separation method comprises:
constructing the database, wherein the database adopts a non-relational MongoDB database;
constructing the preset type interface, wherein the preset type interface is developed by adopting a first preset framework;
and constructing the display page, wherein the display page is developed in a component mode by adopting a second preset frame.
4. The method of claim 3, wherein after building the database, the method further comprises:
processing the genome data by writing a script, importing the genome data into the database, and establishing an index for a field to be queried.
5. The method of claim 3, wherein the predetermined type interface comprises at least one of:
the data interface is used for acquiring the genome data from the database according to the request parameters, inquiring, sorting and paging the genome data based on the genome data, and returning the genome data in a JSON format;
the task interface is used for executing a background command, acquiring a program output result and returning the genome data in the JSON format;
the file type interface is used for returning the file in a streaming mode according to the request path and the request header;
and the user class interface is used for user login or user registration.
6. The method of claim 3, wherein the component comprises at least one of:
the table type display component is used for performing table display, query, sorting, screening, paging and data export according to different application program interfaces;
the graph type display component is used for displaying interactive graphs based on a graph library;
and the tool type display component is used for displaying based on the online analysis tool.
7. The method according to any one of claims 1 to 6, wherein encapsulating the genomic integration database platform according to the running environment required by the genomic integration database platform to generate a target image file comprises:
and packaging the running environment required by the genome integration database platform and the genome integration database platform by using a Docker mirror image to obtain the target mirror image file.
8. A processing apparatus for a genome integration database platform, comprising:
the establishment module is used for establishing a genome integration database platform;
the generating module is used for packaging the genome integration database platform according to the running environment required by the genome integration database platform to generate a target image file;
and the deployment module is used for deploying the target image file to a target server.
9. A computer-readable storage medium, comprising a stored program, wherein when the program is executed, the computer-readable storage medium controls a device on which the computer-readable storage medium is located to execute the processing method of the genome integration database platform according to any one of claims 1 to 7.
10. A processor configured to execute a program, wherein the program executes the processing method of the genome integration database platform according to any one of claims 1 to 7.
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