CN113930477A - Method for detecting autotrophic arsenic-oxidizing functional microorganisms contained in plant root endophytes - Google Patents
Method for detecting autotrophic arsenic-oxidizing functional microorganisms contained in plant root endophytes Download PDFInfo
- Publication number
- CN113930477A CN113930477A CN202111071599.4A CN202111071599A CN113930477A CN 113930477 A CN113930477 A CN 113930477A CN 202111071599 A CN202111071599 A CN 202111071599A CN 113930477 A CN113930477 A CN 113930477A
- Authority
- CN
- China
- Prior art keywords
- endophyte
- solution
- culture
- iii
- liquid
- Prior art date
- Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
- Pending
Links
- 241000196324 Embryophyta Species 0.000 title claims abstract description 52
- 238000000034 method Methods 0.000 title claims abstract description 26
- 244000005700 microbiome Species 0.000 title claims abstract description 23
- 230000001651 autotrophic effect Effects 0.000 title claims abstract description 10
- 239000007788 liquid Substances 0.000 claims abstract description 33
- 241000894006 Bacteria Species 0.000 claims abstract description 24
- 230000003321 amplification Effects 0.000 claims abstract description 13
- 238000003199 nucleic acid amplification method Methods 0.000 claims abstract description 13
- 238000003753 real-time PCR Methods 0.000 claims abstract description 12
- 108020004465 16S ribosomal RNA Proteins 0.000 claims abstract description 9
- 239000001963 growth medium Substances 0.000 claims abstract description 9
- 230000000813 microbial effect Effects 0.000 claims abstract description 9
- 238000009630 liquid culture Methods 0.000 claims abstract description 7
- 238000012165 high-throughput sequencing Methods 0.000 claims abstract description 6
- 239000000243 solution Substances 0.000 claims description 46
- 238000011282 treatment Methods 0.000 claims description 33
- FAPWRFPIFSIZLT-UHFFFAOYSA-M Sodium chloride Chemical compound [Na+].[Cl-] FAPWRFPIFSIZLT-UHFFFAOYSA-M 0.000 claims description 26
- UIIMBOGNXHQVGW-UHFFFAOYSA-M sodium bicarbonate Substances [Na+].OC([O-])=O UIIMBOGNXHQVGW-UHFFFAOYSA-M 0.000 claims description 19
- 229910000030 sodium bicarbonate Inorganic materials 0.000 claims description 19
- CSNNHWWHGAXBCP-UHFFFAOYSA-L magnesium sulphate Substances [Mg+2].[O-][S+2]([O-])([O-])[O-] CSNNHWWHGAXBCP-UHFFFAOYSA-L 0.000 claims description 17
- 239000000256 polyoxyethylene sorbitan monolaurate Substances 0.000 claims description 14
- 229910052943 magnesium sulfate Inorganic materials 0.000 claims description 13
- 239000011780 sodium chloride Substances 0.000 claims description 13
- 229920001213 Polysorbate 20 Polymers 0.000 claims description 12
- 235000010486 polyoxyethylene sorbitan monolaurate Nutrition 0.000 claims description 12
- 239000002244 precipitate Substances 0.000 claims description 11
- 210000004027 cell Anatomy 0.000 claims description 10
- NTHXOOBQLCIOLC-UHFFFAOYSA-N iohexol Chemical compound OCC(O)CN(C(=O)C)C1=C(I)C(C(=O)NCC(O)CO)=C(I)C(C(=O)NCC(O)CO)=C1I NTHXOOBQLCIOLC-UHFFFAOYSA-N 0.000 claims description 10
- 229960001025 iohexol Drugs 0.000 claims description 10
- 230000001580 bacterial effect Effects 0.000 claims description 8
- 238000005070 sampling Methods 0.000 claims description 8
- SUKJFIGYRHOWBL-UHFFFAOYSA-N sodium hypochlorite Chemical compound [Na+].Cl[O-] SUKJFIGYRHOWBL-UHFFFAOYSA-N 0.000 claims description 7
- 239000006228 supernatant Substances 0.000 claims description 7
- 239000005708 Sodium hypochlorite Substances 0.000 claims description 6
- AIYUHDOJVYHVIT-UHFFFAOYSA-M caesium chloride Chemical compound [Cl-].[Cs+] AIYUHDOJVYHVIT-UHFFFAOYSA-M 0.000 claims description 6
- 238000005119 centrifugation Methods 0.000 claims description 6
- 230000001066 destructive effect Effects 0.000 claims description 6
- 239000002609 medium Substances 0.000 claims description 6
- 108090000623 proteins and genes Proteins 0.000 claims description 6
- DAEPDZWVDSPTHF-UHFFFAOYSA-M sodium pyruvate Chemical compound [Na+].CC(=O)C([O-])=O DAEPDZWVDSPTHF-UHFFFAOYSA-M 0.000 claims description 6
- 101150050284 aioA gene Proteins 0.000 claims description 5
- 238000004458 analytical method Methods 0.000 claims description 5
- 239000000706 filtrate Substances 0.000 claims description 5
- 238000012545 processing Methods 0.000 claims description 5
- 239000004744 fabric Substances 0.000 claims description 4
- 238000001914 filtration Methods 0.000 claims description 4
- 239000000203 mixture Substances 0.000 claims description 4
- 230000010355 oscillation Effects 0.000 claims description 4
- 239000002689 soil Substances 0.000 claims description 4
- WQZGKKKJIJFFOK-GASJEMHNSA-N Glucose Natural products OC[C@H]1OC(O)[C@H](O)[C@@H](O)[C@@H]1O WQZGKKKJIJFFOK-GASJEMHNSA-N 0.000 claims description 3
- 239000001888 Peptone Substances 0.000 claims description 3
- 108010080698 Peptones Proteins 0.000 claims description 3
- 229920002472 Starch Polymers 0.000 claims description 3
- 229940041514 candida albicans extract Drugs 0.000 claims description 3
- 108010079058 casein hydrolysate Proteins 0.000 claims description 3
- ZPWVASYFFYYZEW-UHFFFAOYSA-L dipotassium hydrogen phosphate Chemical compound [K+].[K+].OP([O-])([O-])=O ZPWVASYFFYYZEW-UHFFFAOYSA-L 0.000 claims description 3
- 238000002474 experimental method Methods 0.000 claims description 3
- 239000008103 glucose Substances 0.000 claims description 3
- 238000000703 high-speed centrifugation Methods 0.000 claims description 3
- 229910017053 inorganic salt Inorganic materials 0.000 claims description 3
- 235000019319 peptone Nutrition 0.000 claims description 3
- 239000000843 powder Substances 0.000 claims description 3
- 238000012163 sequencing technique Methods 0.000 claims description 3
- 229940054269 sodium pyruvate Drugs 0.000 claims description 3
- 239000008107 starch Substances 0.000 claims description 3
- 235000019698 starch Nutrition 0.000 claims description 3
- 238000009210 therapy by ultrasound Methods 0.000 claims description 3
- 239000012138 yeast extract Substances 0.000 claims description 3
- 241000233866 Fungi Species 0.000 claims description 2
- 210000002421 cell wall Anatomy 0.000 claims description 2
- 239000012535 impurity Substances 0.000 claims description 2
- 239000011259 mixed solution Substances 0.000 claims description 2
- 229910001385 heavy metal Inorganic materials 0.000 abstract description 13
- 229910052751 metal Inorganic materials 0.000 abstract description 6
- 239000002184 metal Substances 0.000 abstract description 6
- 238000000926 separation method Methods 0.000 abstract description 6
- 230000008859 change Effects 0.000 abstract description 5
- 230000000694 effects Effects 0.000 abstract description 5
- 230000008569 process Effects 0.000 abstract description 5
- 238000005516 engineering process Methods 0.000 abstract description 4
- 230000002503 metabolic effect Effects 0.000 abstract description 2
- 108020004414 DNA Proteins 0.000 description 7
- 230000003647 oxidation Effects 0.000 description 6
- 238000007254 oxidation reaction Methods 0.000 description 6
- 229910052785 arsenic Inorganic materials 0.000 description 4
- RQNWIZPPADIBDY-UHFFFAOYSA-N arsenic atom Chemical compound [As] RQNWIZPPADIBDY-UHFFFAOYSA-N 0.000 description 4
- 239000011248 coating agent Substances 0.000 description 4
- 238000000576 coating method Methods 0.000 description 4
- 238000012258 culturing Methods 0.000 description 4
- 230000006870 function Effects 0.000 description 3
- XLYOFNOQVPJJNP-ZSJDYOACSA-N heavy water Substances [2H]O[2H] XLYOFNOQVPJJNP-ZSJDYOACSA-N 0.000 description 3
- ALYNCZNDIQEVRV-UHFFFAOYSA-N 4-aminobenzoic acid Chemical compound NC1=CC=C(C(O)=O)C=C1 ALYNCZNDIQEVRV-UHFFFAOYSA-N 0.000 description 2
- IJGRMHOSHXDMSA-UHFFFAOYSA-N Atomic nitrogen Chemical compound N#N IJGRMHOSHXDMSA-UHFFFAOYSA-N 0.000 description 2
- OKTJSMMVPCPJKN-UHFFFAOYSA-N Carbon Chemical compound [C] OKTJSMMVPCPJKN-UHFFFAOYSA-N 0.000 description 2
- LFQSCWFLJHTTHZ-UHFFFAOYSA-N Ethanol Chemical compound CCO LFQSCWFLJHTTHZ-UHFFFAOYSA-N 0.000 description 2
- PVNIIMVLHYAWGP-UHFFFAOYSA-N Niacin Chemical compound OC(=O)C1=CC=CN=C1 PVNIIMVLHYAWGP-UHFFFAOYSA-N 0.000 description 2
- 230000009471 action Effects 0.000 description 2
- 239000000872 buffer Substances 0.000 description 2
- 239000007853 buffer solution Substances 0.000 description 2
- 229910052799 carbon Inorganic materials 0.000 description 2
- 238000006243 chemical reaction Methods 0.000 description 2
- RMRCNWBMXRMIRW-BYFNXCQMSA-M cyanocobalamin Chemical compound N#C[Co+]N([C@]1([H])[C@H](CC(N)=O)[C@]\2(CCC(=O)NC[C@H](C)OP(O)(=O)OC3[C@H]([C@H](O[C@@H]3CO)N3C4=CC(C)=C(C)C=C4N=C3)O)C)C/2=C(C)\C([C@H](C/2(C)C)CCC(N)=O)=N\C\2=C\C([C@H]([C@@]/2(CC(N)=O)C)CCC(N)=O)=N\C\2=C(C)/C2=N[C@]1(C)[C@@](C)(CC(N)=O)[C@@H]2CCC(N)=O RMRCNWBMXRMIRW-BYFNXCQMSA-M 0.000 description 2
- 230000007613 environmental effect Effects 0.000 description 2
- 230000012010 growth Effects 0.000 description 2
- 230000007246 mechanism Effects 0.000 description 2
- 239000012528 membrane Substances 0.000 description 2
- 230000004060 metabolic process Effects 0.000 description 2
- 238000012986 modification Methods 0.000 description 2
- 230000004048 modification Effects 0.000 description 2
- 230000033116 oxidation-reduction process Effects 0.000 description 2
- 230000008635 plant growth Effects 0.000 description 2
- 230000001105 regulatory effect Effects 0.000 description 2
- 238000011160 research Methods 0.000 description 2
- 230000001954 sterilising effect Effects 0.000 description 2
- 238000004659 sterilization and disinfection Methods 0.000 description 2
- 238000006467 substitution reaction Methods 0.000 description 2
- 229910052720 vanadium Inorganic materials 0.000 description 2
- XLYOFNOQVPJJNP-UHFFFAOYSA-N water Substances O XLYOFNOQVPJJNP-UHFFFAOYSA-N 0.000 description 2
- YBJHBAHKTGYVGT-ZKWXMUAHSA-N (+)-Biotin Chemical compound N1C(=O)N[C@@H]2[C@H](CCCCC(=O)O)SC[C@@H]21 YBJHBAHKTGYVGT-ZKWXMUAHSA-N 0.000 description 1
- 108091000130 1-aminocyclopropane-1-carboxylate deaminase Proteins 0.000 description 1
- NLXLAEXVIDQMFP-UHFFFAOYSA-N Ammonia chloride Chemical compound [NH4+].[Cl-] NLXLAEXVIDQMFP-UHFFFAOYSA-N 0.000 description 1
- 241000051984 Blepharidachne Species 0.000 description 1
- GHOKWGTUZJEAQD-UHFFFAOYSA-N Chick antidermatitis factor Natural products OCC(C)(C)C(O)C(=O)NCCC(O)=O GHOKWGTUZJEAQD-UHFFFAOYSA-N 0.000 description 1
- 102000012286 Chitinases Human genes 0.000 description 1
- 108010022172 Chitinases Proteins 0.000 description 1
- 241000223782 Ciliophora Species 0.000 description 1
- 229910021580 Cobalt(II) chloride Inorganic materials 0.000 description 1
- 229910021592 Copper(II) chloride Inorganic materials 0.000 description 1
- 238000007400 DNA extraction Methods 0.000 description 1
- 241000238631 Hexapoda Species 0.000 description 1
- 241000216643 Hydrogenophaga Species 0.000 description 1
- 229910021577 Iron(II) chloride Inorganic materials 0.000 description 1
- 229910021380 Manganese Chloride Inorganic materials 0.000 description 1
- GLFNIEUTAYBVOC-UHFFFAOYSA-L Manganese chloride Chemical compound Cl[Mn]Cl GLFNIEUTAYBVOC-UHFFFAOYSA-L 0.000 description 1
- 229910003328 NaAsO2 Inorganic materials 0.000 description 1
- 229910018890 NaMoO4 Inorganic materials 0.000 description 1
- 241000244206 Nematoda Species 0.000 description 1
- 229910021586 Nickel(II) chloride Inorganic materials 0.000 description 1
- 241000566145 Otus Species 0.000 description 1
- 229930182555 Penicillin Natural products 0.000 description 1
- JGSARLDLIJGVTE-MBNYWOFBSA-N Penicillin G Chemical compound N([C@H]1[C@H]2SC([C@@H](N2C1=O)C(O)=O)(C)C)C(=O)CC1=CC=CC=C1 JGSARLDLIJGVTE-MBNYWOFBSA-N 0.000 description 1
- 241001647968 Shinella Species 0.000 description 1
- 229930003451 Vitamin B1 Natural products 0.000 description 1
- 229930003571 Vitamin B5 Natural products 0.000 description 1
- 229930003756 Vitamin B7 Natural products 0.000 description 1
- 230000036579 abiotic stress Effects 0.000 description 1
- 238000003916 acid precipitation Methods 0.000 description 1
- 229960004050 aminobenzoic acid Drugs 0.000 description 1
- 229910000413 arsenic oxide Inorganic materials 0.000 description 1
- 229960002594 arsenic trioxide Drugs 0.000 description 1
- 244000052616 bacterial pathogen Species 0.000 description 1
- 230000008901 benefit Effects 0.000 description 1
- 230000004071 biological effect Effects 0.000 description 1
- 230000004790 biotic stress Effects 0.000 description 1
- FAPWYRCQGJNNSJ-UBKPKTQASA-L calcium D-pantothenic acid Chemical compound [Ca+2].OCC(C)(C)[C@@H](O)C(=O)NCCC([O-])=O.OCC(C)(C)[C@@H](O)C(=O)NCCC([O-])=O FAPWYRCQGJNNSJ-UBKPKTQASA-L 0.000 description 1
- 229960002079 calcium pantothenate Drugs 0.000 description 1
- JJWKPURADFRFRB-UHFFFAOYSA-N carbonyl sulfide Chemical compound O=C=S JJWKPURADFRFRB-UHFFFAOYSA-N 0.000 description 1
- 210000003850 cellular structure Anatomy 0.000 description 1
- 238000010835 comparative analysis Methods 0.000 description 1
- 230000001276 controlling effect Effects 0.000 description 1
- ORTQZVOHEJQUHG-UHFFFAOYSA-L copper(II) chloride Chemical compound Cl[Cu]Cl ORTQZVOHEJQUHG-UHFFFAOYSA-L 0.000 description 1
- 229960002104 cyanocobalamin Drugs 0.000 description 1
- 235000000639 cyanocobalamin Nutrition 0.000 description 1
- 239000011666 cyanocobalamin Substances 0.000 description 1
- 230000032798 delamination Effects 0.000 description 1
- 238000000151 deposition Methods 0.000 description 1
- 238000012938 design process Methods 0.000 description 1
- KTTMEOWBIWLMSE-UHFFFAOYSA-N diarsenic trioxide Chemical compound O1[As](O2)O[As]3O[As]1O[As]2O3 KTTMEOWBIWLMSE-UHFFFAOYSA-N 0.000 description 1
- BNIILDVGGAEEIG-UHFFFAOYSA-L disodium hydrogen phosphate Chemical compound [Na+].[Na+].OP([O-])([O-])=O BNIILDVGGAEEIG-UHFFFAOYSA-L 0.000 description 1
- 229910000397 disodium phosphate Inorganic materials 0.000 description 1
- 230000007717 exclusion Effects 0.000 description 1
- 238000000605 extraction Methods 0.000 description 1
- 239000005556 hormone Substances 0.000 description 1
- 229940088597 hormone Drugs 0.000 description 1
- 230000003993 interaction Effects 0.000 description 1
- NMCUIPGRVMDVDB-UHFFFAOYSA-L iron dichloride Chemical compound Cl[Fe]Cl NMCUIPGRVMDVDB-UHFFFAOYSA-L 0.000 description 1
- 238000002955 isolation Methods 0.000 description 1
- TWRXJAOTZQYOKJ-UHFFFAOYSA-L magnesium chloride Substances [Mg+2].[Cl-].[Cl-] TWRXJAOTZQYOKJ-UHFFFAOYSA-L 0.000 description 1
- 229910001629 magnesium chloride Inorganic materials 0.000 description 1
- 239000011565 manganese chloride Substances 0.000 description 1
- 238000004519 manufacturing process Methods 0.000 description 1
- 231100000783 metal toxicity Toxicity 0.000 description 1
- 238000005065 mining Methods 0.000 description 1
- 230000004660 morphological change Effects 0.000 description 1
- QMMRZOWCJAIUJA-UHFFFAOYSA-L nickel dichloride Chemical compound Cl[Ni]Cl QMMRZOWCJAIUJA-UHFFFAOYSA-L 0.000 description 1
- 229960003512 nicotinic acid Drugs 0.000 description 1
- 235000001968 nicotinic acid Nutrition 0.000 description 1
- 239000011664 nicotinic acid Substances 0.000 description 1
- 229910052757 nitrogen Inorganic materials 0.000 description 1
- 108020004707 nucleic acids Proteins 0.000 description 1
- 150000007523 nucleic acids Chemical class 0.000 description 1
- 102000039446 nucleic acids Human genes 0.000 description 1
- 235000015097 nutrients Nutrition 0.000 description 1
- 239000007800 oxidant agent Substances 0.000 description 1
- 230000001590 oxidative effect Effects 0.000 description 1
- 239000008188 pellet Substances 0.000 description 1
- 229940049954 penicillin Drugs 0.000 description 1
- 230000035790 physiological processes and functions Effects 0.000 description 1
- 239000002504 physiological saline solution Substances 0.000 description 1
- 238000007747 plating Methods 0.000 description 1
- 239000011148 porous material Substances 0.000 description 1
- 238000001556 precipitation Methods 0.000 description 1
- 230000001737 promoting effect Effects 0.000 description 1
- PFIPZKASKUWLHH-UHFFFAOYSA-N pyridoxamine hydrochloride Chemical compound Cl.CC1=NC=C(CO)C(CN)=C1O PFIPZKASKUWLHH-UHFFFAOYSA-N 0.000 description 1
- 230000008261 resistance mechanism Effects 0.000 description 1
- 238000007789 sealing Methods 0.000 description 1
- 239000007787 solid Substances 0.000 description 1
- 238000013517 stratification Methods 0.000 description 1
- 230000035882 stress Effects 0.000 description 1
- 229960003495 thiamine Drugs 0.000 description 1
- DPJRMOMPQZCRJU-UHFFFAOYSA-M thiamine hydrochloride Chemical compound Cl.[Cl-].CC1=C(CCO)SC=[N+]1CC1=CN=C(C)N=C1N DPJRMOMPQZCRJU-UHFFFAOYSA-M 0.000 description 1
- 231100000732 tissue residue Toxicity 0.000 description 1
- 230000001988 toxicity Effects 0.000 description 1
- 231100000419 toxicity Toxicity 0.000 description 1
- 238000012546 transfer Methods 0.000 description 1
- 235000010374 vitamin B1 Nutrition 0.000 description 1
- 239000011691 vitamin B1 Substances 0.000 description 1
- 235000009492 vitamin B5 Nutrition 0.000 description 1
- 239000011675 vitamin B5 Substances 0.000 description 1
- 235000011912 vitamin B7 Nutrition 0.000 description 1
- 239000011735 vitamin B7 Substances 0.000 description 1
Images
Classifications
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/02—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving viable microorganisms
- C12Q1/04—Determining presence or kind of microorganism; Use of selective media for testing antibiotics or bacteriocides; Compositions containing a chemical indicator therefor
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/02—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving viable microorganisms
- C12Q1/04—Determining presence or kind of microorganism; Use of selective media for testing antibiotics or bacteriocides; Compositions containing a chemical indicator therefor
- C12Q1/045—Culture media therefor
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
- C12Q1/6876—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes
- C12Q1/6888—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for detection or identification of organisms
- C12Q1/689—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for detection or identification of organisms for bacteria
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
- C12Q1/6876—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes
- C12Q1/6888—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for detection or identification of organisms
- C12Q1/6895—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for detection or identification of organisms for plants, fungi or algae
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q2600/00—Oligonucleotides characterized by their use
- C12Q2600/158—Expression markers
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q2600/00—Oligonucleotides characterized by their use
- C12Q2600/178—Oligonucleotides characterized by their use miRNA, siRNA or ncRNA
Abstract
The invention discloses a method for detecting autotrophic arsenic-oxidizing functional microorganisms contained in plant root endophytes. The invention can accurately judge the functional microorganism participating in the heavy (similar) metal redox process in the plant endophyte by a comprehensive means of combining separation, culture and DNA-SIP technology. On the basis of efficiently extracting and separating the endophytes in the plant tissues, the endophyte liquid obtained by the enlarged culture and separation of the liquid culture medium is utilized, so that the microbial abundance and the activity of the endophyte liquid are ensured. Meanwhile, by taking DNA-SIP as a means, the microorganisms driving heavy metal redox can be directly and effectively anchored, q-PCR amplification and 16S rRNA high-throughput sequencing are further utilized, and whether the functional bacteria driving the heavy (like) metal redox process exist in the plant endophyte community can be accurately judged by analyzing the abundance change of the heavy metal redox functional microorganism group and the metabolic information of the key functional endophyte microorganisms in the microcosm system.
Description
Technical Field
The invention belongs to the field of microbial ecology, and particularly relates to a method for detecting autotrophic arsenic-oxidizing functional microorganisms contained in plant root endophytes.
Background
Endophytes of plants live mainly in the plant body and can produce various biological effects on host plants. Researches show that the endophyte of the plant can enhance the resistance of host plants to abiotic stress such as temperature, water and metal pollution and biotic stress such as insects, pathogenic bacteria and nematodes, and can provide required nutrients such as nitrogen sources for the plants, thereby promoting the growth of the plants and regulating and controlling the physiological process of the plants.
In recent years, endophytes of plants are widely concerned at home and abroad due to unique ecological characteristics, and a large number of researches show that the endophytes participate in the physiological action and various metabolisms of plants to bring various changes and functions to the plants, for example, the endophytes can promote the host plants to relieve heavy metal stress through plant growth regulating hormones, ACC deaminase, chitinase and the like generated by the host plants, and simultaneously reduce the heavy metal toxicity of the plants by changing the biological effectiveness or toxicity of the heavy metals.
Since most of endophytes cannot be obtained by pure culture technology, although community constitution of the endophytes is found by molecular biology technology, the heavy metal tolerance mechanism of the endophytes at the roots of the plants is still unclear, and the ecological interaction effect between the endophytes with specific functions and the heavy metal polluted soil-plants needs to be further researched.
Disclosure of Invention
On the basis of efficiently extracting and separating plant tissue endophytes with disinfected surfaces, endophyte liquid with stable activity is obtained through liquid culture medium amplification culture, meanwhile, a culture system for driving heavy metal morphological change by endophyte liquid microorganisms is established by taking a microcosm environment and a DNA-SIP as means, and finally, whether functional bacteria driving heavy (similar) metal redox process exist in a plant endophyte community is judged by selecting different processing heavy layer DNAs to perform q-PCR amplification analysis and high-throughput sequencing of a 16S rRNA gene V4-V5 area, so that the method has important significance for the mechanism that the centi-clearer plant endophyte community promotes plant growth and resists heavy metal.
The purpose of the invention is realized by the following technical scheme:
a method for detecting autotrophic arsenic-oxidizing functional microorganisms contained in plant root endophytes comprises the following steps:
(1) removing the foreign bacteria on the root surface of the plant
Shaking off the soil attached to the surface of the plant root, and sequentially placing the plant root in MgSO4Solution, MgSO 20 containing Tween 204Solution, MgSO4Solution, sodium hypochlorite solution containing Tween 20, MgSO4Carrying out vortex oscillation or ultrasonic treatment in the solution to remove the plant root surface bacteria;
MgSO4very easily absorb water, using MgSO4Can dehydrate bacteria, thereby achieving the purpose of sterilization. Further, MgSO4And is also a strong oxidizing agent, which can further disrupt the cellular structure of the bacteria. Vortex oscillation or ultrasonic treatment aims to ensure that the buffer solution is fully contacted with the roots of the plants, so that the sterilization is more thorough.
MgSO as described in Steps (1) and (2)4The solution preferably has a concentration of 10 mM;
MgSO containing Tween 20 as described in step (1)4The solution, Tween 20 preferably has a concentration of 0.01% (v/v);
the sodium hypochlorite solution containing the Tween 20 in the step (1), wherein the concentration of the sodium hypochlorite is preferably 1% (v/v), and the concentration of the Tween 20 is preferably 0.01% (v/v);
(2) extraction and isolation of endophytes
Removing root surface impurity bacteria of plant root in MgSO4Breaking cell wall in the solution, homogenizing, filtering with filter cloth, and collecting filtrate; centrifuging the filtrate at 500 Xg for 10min, centrifuging the supernatant at 9500rpm for 15min, centrifuging to obtain weight difference, settling the heavy bacterial cells to the bottom, and keeping the thallus cell precipitate;
resuspending the thallus cell precipitate in sterile NaCl solution, slowly adding into iohexol solution, centrifuging at 15000 Xg for 60min, layering thallus cell precipitate in iohexol gradient density by centrifugation, displaying endophyte cells as milky white band, and recovering milky band part; removing the recovered iohexol, adding an equal volume of sterile NaCl solution, centrifuging at 7500 Xg for 20min, removing the supernatant, adding sterile NaCl solution, and resuspending; finally, centrifuging at 7500 Xg for 20min, taking the precipitate, adding sterile NaCl solution for resuspension, namely the recovered endophyte;
the pore diameter of the filter cloth in the step (2) is preferably 25 μm;
the concentration of the sterile NaCl solution in the step (2) is preferably 0.8% (W/V);
the concentration of the iohexol solution in the step (2) is preferably 1.3 g/mL;
(3) expanded culture of endophyte
Adding the separated plant root endophyte into an R2A liquid culture medium, and carrying out aerobic culture for 10-16h to obtain endophyte bacterial liquid;
the composition of the R2A liquid medium is as follows: 0.5g/L of yeast extract powder; peptone 0.5 g/L; 0.5g/L of casein hydrolysate; glucose 0.5 g/L; 0.5g/L of soluble starch; dipotassium hydrogen phosphate 0.3 g/L; anhydrous magnesium sulfate 0.024 g/L; 0.3g/L of sodium pyruvate;
(4) establishment and analysis of endophyte liquid oxidized As (III) -DNA-SIP microcosm cultivation system
4.1, adding the endophyte bacterial liquid obtained in the step (3) into an inorganic salt culture medium (MSM), and adding As (III) and13/12c-labelled NaHCO3As an electron acceptorSealing body and electron donor with aerobic membrane, and shake culturing;
the experiment included four groups of treatments:
A、13C-NaHCO3+ As (III) + endophytic bacteria liquid (C)13Experimental group C);
B、12C-NaHCO3+ As (III) + endophytic bacteria liquid (C)12Experimental group C);
C、13C-NaHCO3+ endophytic bacteria solution (As-free control group);
D、13C-NaHCO3+ as (iii) (sterile control group);
during the shaking culture period, carrying out non-destructive sampling at a plurality of time points, and detecting the concentrations of As (III) and As (V) in different treatments; after 15-20 days of culture, destructive sampling is carried out, and then differently processed DNA is extracted for subsequent SIP analysis;
the nondestructive sampling is to sample by using a needle tube without opening a bottle cap, so that the original domestication environmental conditions of a reaction system are kept to the maximum extent, and the reaction is continued;
the destructive sampling is to open a cover for sampling, the original domestication environmental condition is not changed after air enters a sample bottle, and the experiment is finished;
if a carbon source or As (III) is largely consumed during the culture period, corresponding components are supplemented to strengthen the metabolism of the microorganism;
preferably, the processing of the first and second sets of treatments,13C-NaHCO3the concentration of the mixed solution is 8mM,12C-NaHCO3the concentration is 8mM, the initial concentration of As (III) is 1-5mM, and 3.33mL of endophyte liquid is added in each liter of culture system.
4.2, performing ultra-high speed centrifugation on the extracted DNA, collecting each layered component, measuring the Buoyancy Density (BD) of each layered component, and removing CsCl precipitate; addition of ddH to the layered Components2Dissolving DNA by using O, finally obtaining purified DNA layers, and performing q-PCR amplification on each layer component by using an aioA gene (arsenic oxidation functional gene) primer;
4.3, selecting and processing the layered components with higher q-PCR amplification values in A and B, and performing high-throughput sequencing on the 16S rRNA gene V4-V5 region; comparing the sequencing data with the existing 16S rRNA database, classifying the data with more than 97% of similarity into a small group (OTU), and analyzing the microbial community diversity and abundance difference between treatments;
and (4) excluding the treatment of the control C, and determining the OTU with higher relative abundance in the treatment A as the autotrophic arsenic-oxidizing functional microorganism compared with the treatment B.
Compared with the prior art, the invention has the following advantages and effects:
the method for detecting the microorganisms with autotrophic arsenic oxidation function in the plant root endophyte provided by the invention can accurately judge the functional microorganisms participating in the heavy (similar) metal redox process in the plant root endophyte by combining the comprehensive means of separation and culture and DNA-SIP technology. The endophyte liquid obtained by the enlarged culture and separation of the liquid culture medium ensures the microbial abundance and activity of the endophyte liquid. Meanwhile, by taking DNA-SIP as a means, the method can directly and effectively anchor microorganisms driving heavy metal oxidation reduction, further utilizes q-PCR amplification and 16S rRNA high-throughput sequencing, and can accurately judge whether the plant endophyte community has heavy (like) metal oxidation functional bacteria or not by analyzing abundance change of the heavy metal oxidation functional microorganism group and metabolic information of key functional endophyte microorganisms in a microcosm system, thereby having important significance for understanding the heavy metal oxidation reduction driving process and the heavy metal resistance mechanism of the plant endophyte.
Drawings
FIG. 1 shows the result of coating isolated plant root endophytes.
FIG. 2 is13Concentration change curves of As (III) and As (V) in the C + As (III) + endophytic bacteria liquid treatment system.
FIG. 3 is12Concentration change curves of As (III) and As (V) in the C + As (III) + endophytic bacteria liquid treatment system.
FIG. 4 is13As (III) and As (V) concentration profiles in the C + As (III) treatment system.
FIG. 5 is the results of the relative abundance of the aioA gene in the DNA of each buoyancy density component of the different treatment groups at day 15.
FIG. 6 is13C/12q-PCR amplification in C + As (III) + endophytic bacteria liquid treatment groupHigher numbers of layered OTU relative abundance results.
Detailed Description
The present invention will be described in further detail with reference to examples and drawings, but the present invention is not limited thereto.
Examples
A method for detecting whether a plant root endophyte contains autotrophic arsenic oxidation functional microorganisms or not comprises the following steps:
separation of endophytes from plant roots
1. Pretreating the roots of plants:
(1) gently shaking off soil attached to the root of a ciliate desert-grass growing in Guangxi river basin and polluted by arsenic in one mining area for a long time, and transferring the root system to a container containing 10mL of MgSO 24(10mM) solution in centrifuge tube, vortex and shake for 5min, remove turbidity repeatedly, then transfer to Tween 20 (0.01%, V/V) in 10mM MgSO 204Vortex and oscillate in the solution for 5min, and ultrasonically treat for 15 min; while retaining the last buffer coating, more microbial growth was observed (FIG. 1 a);
(2) following the above procedure, 10mL MgSO was again added4Vortex shaking (10mM) solution for 5min, transferring to 1% NaClO solution containing Tween 20 (0.01%, V/V), vortex shaking for 20min, and ultrasonic processing for 15 min; finally, the plant roots were transferred to 10mL MgSO4Vortex shaking in (10mM) solution, repeating the operation for 5 times, reserving the last buffer solution coating, and observing that only a few microorganisms grow (figure 1b), thereby basically achieving the purpose of removing root surface bacteria;
the coating observation method was as follows: the solid LB plate medium was smeared with 100. mu.L of the remaining buffer, cultured at 25 ℃ for 7 days, and the production of microorganisms in the plate was observed.
2. And (3) endophyte separation:
removing the root surface sundry fungi in the step 1, transferring the cut plant root system to a wall breaking machine, and adding 10mL MgSO4(10mM) the solution is broken up to give a homogenate; meanwhile, filtering homogenate by using a filter cloth with the diameter of 25 mu m to achieve the aim of removing plant tissue residues; the filtrate was then centrifuged (500 Xg, 10min) and centrifuged again(9500rpm,15min), then abandoning the supernatant, because the endophyte bacteria have heavier thallus mass, and depositing to the bottom of the centrifuge tube after centrifugation.
The cell pellet was resuspended in 25mL of 0.8% sterile NaCl solution and then slowly transferred over 10mL iohexol solution (ρ ═ 1.3g/mL), followed by high speed centrifugation (15000 × g, 60 min); under the action of centrifugal force, the endophyte is concentrated at a certain specific position and forms a milky strip, at the moment, the milky strip part is recovered, an equal volume of sterile NaCl solution is added, centrifugation is carried out (7500 Xg, 20min), and supernatant is removed; adding 20mL of 0.8% sterile NaCl solution for resuspension, centrifuging again (7500 Xg, 20min), and discarding the supernatant, wherein the steps are to wash off residual iohexol; and finally, resuspending the precipitate obtained after centrifugation in sterile physiological saline to obtain the extracted live bacteria in the roots. The results of the plating culture are shown in FIG. 1 c.
Second, the enlargement culture of endophyte
Culturing the separated plant root living bacteria (obtained in step one (2)), namely adding 10mL of R2A liquid culture medium which is sterilized and cooled under high pressure into a 50mL sterile centrifuge tube under the environment of a sterile super clean bench, and then taking 100uL of OD600Transferring the intraradicular bacterial liquid with the value of 0.15 into a liquid culture medium, performing aerobic culture for 10-16h in a constant-temperature shaking table at 25 ℃ by inclined oscillation (200rpm), and culturing until the logarithmic phase of the bacterial liquid or turbidity is observed visually; a blank control was also set to monitor whether the liquid medium was contaminated.
The composition of the R2A liquid medium is as follows: 0.5g/L of yeast extract powder; peptone 0.5 g/L; 0.5g/L of casein hydrolysate; glucose 0.5 g/L; 0.5g/L of soluble starch; dipotassium hydrogen phosphate 0.3 g/L; anhydrous magnesium sulfate 0.024 g/L; sodium pyruvate 0.3 g/L.
Third, the establishment and analysis of endophyte liquid oxidized As (III) -DNA-SIP microcosm cultivation system
1. Adding 100uL of the endophyte bacterial liquid after enlargement culture into a penicillin bottle containing 30mL of inorganic salt Medium (MSM) solution under a sterile super clean bench, and adding As (III) and13/12c-labelled NaHCO3As electron acceptor and electron donor, respectively. Finally, sealing the culture chamber with an aerobic membrane, and culturing the microcosm culture system in an incubator at 25 ℃ under shaking (200 rpm).
As (III) Oxidation Microcosmic design Process includes four treatments:
(1)8mM 13C-NaHCO3+1mM As (III) +100uL of endophyte;
(2)8mM 12C-NaHCO3+1mM As (III) +100uL of endophyte;
(3)8mM 13C-NaHCO3+100uL of endophyte liquid;
(4)8mM 13C-NaHCO3+1mM As(III);
as (III) is NaAsO2Solutions, each treatment was repeated 3 times.
MSM solution composition: 10.55g/L Na2HPO4·12H2O,1.5g/L KH2PO4,0.3g/L NH4Cl,0.1g/L MgCl20.01mg/L vitamin H, 0.02mg/L nicotinic acid, 0.1mg/L vitamin B1, 0.01mg/L p-aminobenzoic acid, 0.005mg/L vitamin B5, 0.05mg/L pyridoxamine hydrochloride, 0.01mg/L cyanocobalamin, 10. mu.L/L HCl (25%, w/w), 1.5mg/L FeCl2·4H2O,0.19mg/L CoCl2·6H2O,0.1mg/L MnCl2·2H2O,0.07mg/L ZnCl2,0.024mg/L NiCl2·6H2O,0.036mg/L NaMoO4·2H2O,0.006mg/L H3BO3,0.002mg/L CuCl2·2H2O;
2. During the microcosm culture, samples were taken at 1-3 day intervals for different treatments, and after filtration, the As (III) and As (V) concentrations were determined by HPLC-hydride generation-atomic fluorescence (HPLC-HG-AFS).
The experimental period was 15 days, and treatments (1), (2) and (4) were sampled at 9 time points on days 0, 3, 4, 5, 8, 10, 11, 13 and 15, respectively.
FIG. 2 shows the results of the variation of As (III) and As (V) concentrations in treatment (1);
FIG. 3 shows the results of the As (III) and As (V) concentration variations in treatment (2);
FIG. 4 shows the results of the As (III) and As (V) concentration variations in treatment (4);
as can be seen from FIGS. 2 and 3, the endophytic bacteria in roots almost exhausted 1mM As (III) added at one time in the system at days 5, 8, 11, and 13.
As can be seen from FIG. 4, there was no significant change in 1mM As (III) in the Microcosmic culture system with the addition of the rootless endophyte.
The results show that the root endophyte liquid microorganism can effectively and rapidly oxidize As (III) to As (V) in the environment of a micro cosmic culture system.
If a large amount of the carbon source or As (III) is consumed during the cultivation, the corresponding components are supplemented in time.
3. On day 15 of the Microcosmic culture System, destructive sampling was performed for treatments (1), (2) and (3), and total DNA of the Microcosmic culture system was extracted using a soil DNA extraction kit. Then carrying out ultra-high speed centrifugal delamination (60000rpm,48h,20 ℃); after centrifugation, the mixed liquid of the centrifuge tube is collected and recovered in layers by using a pump with fixed flow velocity, the BD value of the recovered component in each layer is measured at the same time, then nucleic acid precipitation aid and ethanol are used for precipitation to remove CsCl, and 30uLddH is added2O is the purified recovered component.
In addition, q-PCR amplification of the layered fractions was performed using the known arsenic oxide gene primers aioAF (5 '-ccacttctgcatcggggntgyggta-3') and aioA R (5 '-ggagttgtaggcggccktrttgdat-3').
The BD values of the centrifuged fractions of each layer were plotted on the abscissa and the q-PCR amplification value of the functional gene aioA on the ordinate. As can be seen from FIG. 5, the peaks corresponding to the stratification with higher q-PCR amplification values in the 3 treatment groups each clearly appeared on different BD values.
4. And (3) respectively selecting the layers with higher q-PCR amplification values in the treatment (1) and the treatment (2) of the microcosm culture system on the 15 th day, and performing high-throughput sequencing on the V4-V5 region of the 16S rRNA gene. Sequencing data were subsequently compared to the existing 16S rRNA database, assigning groups with more than 97% similarity to one sub-group (OTU), and analyzing microbial community diversity and abundance differences between the two treatments.
FIG. 6 shows the endophyte microbial population in the microcosm culture systemThe first 10 OTUs with the highest abundance in the colony. After exclusion of control treatment (3), comparative analysis13C and12after the abundance of the microbial communities treated by the C experimental group is different, a microcosm system is discovered13The Hydrogenophaga and Shinella enriched in C + As (III) + endophyte liquid treatment may have As (III) oxidizing ability.
The above embodiments are preferred embodiments of the present invention, but the present invention is not limited to the above embodiments, and any other changes, modifications, substitutions, combinations, and simplifications which do not depart from the spirit and principle of the present invention should be construed as equivalents thereof, and all such changes, modifications, substitutions, combinations, and simplifications are intended to be included in the scope of the present invention.
Claims (10)
1. A method for detecting autotrophic arsenic-oxidizing functional microorganisms contained in plant root endophytes is characterized by comprising the following steps:
(1) removing the plant root surface sundry fungus;
(2) extracting and separating endophytes;
(3) performing expanded culture on endophytes;
(4) establishing and analyzing an endophyte liquid oxidized As (III) -DNA-SIP microcosm cultivation system:
4.1, adding the endophyte bacterial liquid obtained in the step (3) into an inorganic salt culture medium, and adding As, (III) and13/12c-labelled NaHCO3As electron acceptor and electron donor, shake culture;
the experiment included four groups of treatments:
A、13C-NaHCO3+ As (III) + endophytic bacteria liquid (C)13Experimental group C);
B、12C-NaHCO3+ As (III) + endophytic bacteria liquid (C)12Experimental group C);
C、13C-NaHCO3+ endophytic bacteria solution (As-free control group);
D、13C-NaHCO3+ as (iii) (sterile control group);
during the shaking culture period, carrying out non-destructive sampling at a plurality of time points, and detecting the concentrations of As (III) and As (V) in different treatments; after 15-20 days of culture, destructive sampling is carried out, and then differently processed DNA is extracted for subsequent SIP analysis;
4.2, performing ultra-high speed centrifugation on the extracted DNA, collecting each layered component, measuring the buoyancy density of the layered component, and removing CsCl precipitate; addition of ddH to the layered Components2Dissolving DNA by using O, finally obtaining purified DNA layers, and performing q-PCR amplification on each layer component by using an aioA gene primer;
4.3, selecting and processing the layered components with higher q-PCR amplification values in A and B, and performing high-throughput sequencing on the 16S rRNA gene V4-V5 region; comparing the sequencing data with the existing 16S rRNA database, classifying the data with more than 97% of similarity into a small group (OTU), and analyzing the microbial community diversity and abundance difference between treatments;
and (4) excluding the treatment of the control C, and determining the OTU with higher relative abundance in the treatment A as the autotrophic arsenic-oxidizing functional microorganism compared with the treatment B.
2. The method of claim 1, wherein: in each of the sets of treatments described in step 4.1,13C-NaHCO3the concentration of the mixed solution is 8mM,12C-NaHCO3the concentration is 8mM, the initial concentration of As (III) is 1-5mM, and 3.33mL of endophyte liquid is added in each liter of culture system.
3. The method of claim 1, wherein: the step (1) is as follows: shaking off the soil attached to the surface of the plant root, and sequentially placing the plant root in MgSO4Solution, MgSO 20 containing Tween 204Solution, MgSO4Solution, sodium hypochlorite solution containing Tween 20, MgSO4And (3) carrying out vortex oscillation or ultrasonic treatment in the solution to remove the plant root surface bacteria.
4. The method of claim 3, wherein: MgSO containing Tween 20 as described in step (1)4The solution, Tween 20 concentration is 0.01% (v/v).
5. The method of claim 3, wherein: the sodium hypochlorite solution containing the Tween 20 in the step (1) has the sodium hypochlorite concentration of 1% (v/v) and the Tween 20 concentration of 0.01% (v/v).
6. The method of claim 1, wherein: the step (2) is as follows:
removing root surface impurity bacteria of plant root in MgSO4Breaking cell wall in the solution, homogenizing, filtering with filter cloth, and collecting filtrate; centrifuging the filtrate at 500 Xg for 10min, centrifuging the supernatant at 9500rpm for 15min, and retaining thallus cell precipitate;
resuspending the thallus cell precipitate in sterile NaCl solution, slowly adding into iohexol solution, centrifuging at 15000 Xg for 60min, layering thallus cell precipitate in iohexol gradient density by centrifugation, displaying endophyte cells as milky white band, and recovering milky band part; removing the recovered iohexol, adding an equal volume of sterile NaCl solution, centrifuging at 7500 Xg for 20min, removing the supernatant, adding sterile NaCl solution, and resuspending; and finally, centrifuging at 7500 Xg for 20min, taking the precipitate, adding sterile NaCl solution for resuspension, and obtaining the recovered endophyte.
7. The method of claim 6, wherein: the concentration of the sterile NaCl solution in the step (2) is 0.8% (W/V).
8. The method of claim 6, wherein: the concentration of the iohexol solution in the step (2) is 1.3 g/mL.
9. The method of claim 1, wherein: the step (3) is as follows: and adding the separated plant root endophyte into an R2A liquid culture medium, and carrying out aerobic culture for 10-16h to obtain an endophyte bacterial liquid.
10. The method of claim 9, wherein: the composition of the R2A liquid medium is as follows: 0.5g/L of yeast extract powder; peptone 0.5 g/L; 0.5g/L of casein hydrolysate; glucose 0.5 g/L; 0.5g/L of soluble starch; dipotassium hydrogen phosphate 0.3 g/L; anhydrous magnesium sulfate 0.024 g/L; sodium pyruvate 0.3 g/L.
Priority Applications (1)
Application Number | Priority Date | Filing Date | Title |
---|---|---|---|
CN202111071599.4A CN113930477A (en) | 2021-09-14 | 2021-09-14 | Method for detecting autotrophic arsenic-oxidizing functional microorganisms contained in plant root endophytes |
Applications Claiming Priority (1)
Application Number | Priority Date | Filing Date | Title |
---|---|---|---|
CN202111071599.4A CN113930477A (en) | 2021-09-14 | 2021-09-14 | Method for detecting autotrophic arsenic-oxidizing functional microorganisms contained in plant root endophytes |
Publications (1)
Publication Number | Publication Date |
---|---|
CN113930477A true CN113930477A (en) | 2022-01-14 |
Family
ID=79275819
Family Applications (1)
Application Number | Title | Priority Date | Filing Date |
---|---|---|---|
CN202111071599.4A Pending CN113930477A (en) | 2021-09-14 | 2021-09-14 | Method for detecting autotrophic arsenic-oxidizing functional microorganisms contained in plant root endophytes |
Country Status (1)
Country | Link |
---|---|
CN (1) | CN113930477A (en) |
Citations (3)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
CN108271339A (en) * | 2014-12-30 | 2018-07-10 | 靛蓝农业公司 | Seed endophyte, compositions related and its application method between cultivar and species |
CN112226524A (en) * | 2020-09-09 | 2021-01-15 | 广东省科学院生态环境与土壤研究所 | Method for distinguishing strains participating in nitrate-dependent antimony oxidation process in soil and key functional genes thereof |
CN112813154A (en) * | 2021-03-11 | 2021-05-18 | 广东省科学院生态环境与土壤研究所 | Method for identifying plant root endophyte colony function and functional gene thereof |
-
2021
- 2021-09-14 CN CN202111071599.4A patent/CN113930477A/en active Pending
Patent Citations (3)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
CN108271339A (en) * | 2014-12-30 | 2018-07-10 | 靛蓝农业公司 | Seed endophyte, compositions related and its application method between cultivar and species |
CN112226524A (en) * | 2020-09-09 | 2021-01-15 | 广东省科学院生态环境与土壤研究所 | Method for distinguishing strains participating in nitrate-dependent antimony oxidation process in soil and key functional genes thereof |
CN112813154A (en) * | 2021-03-11 | 2021-05-18 | 广东省科学院生态环境与土壤研究所 | Method for identifying plant root endophyte colony function and functional gene thereof |
Non-Patent Citations (2)
Title |
---|
MIAOMIAO ZHANG: "Bacteria responsible for antimonite oxidation in antimony-contaminated soil revealed by DNA-SIP coupled to metagenomics", 《FEMS MICROBIOLOGY ECOLOGY》, vol. 97, pages 1 * |
郝大程;陈士林;肖培根;: "基于分子生物学和基因组学的植物根际微生物研究", 微生物学通报, no. 06, pages 1 * |
Similar Documents
Publication | Publication Date | Title |
---|---|---|
CN105713862B (en) | The bacterial strain and its application of degradable pyridine and ammonia nitrogen | |
CN107619806A (en) | Bacterium and its application of one plant of Adsorption of Lead and heavy metal tolerance | |
CN105112345B (en) | A kind of sphingolipid bacterium (Sphingobium sp.) IBY and its application in absorption degradation hydrophobic organic compound | |
CN106906173A (en) | A kind of Thiobacillus thioxidans and its application in removing heavy metals are removed | |
CN110982756B (en) | Strain of Folum decastes and application of strain in arsenic oxidation | |
CN101397544B (en) | Manganese oxidizing bacteria bacillus strain WH4 and use thereof | |
CN105925516B (en) | A kind of facultative autotrophy type sulphur oxidation denitrification rhizobium F43b and its application | |
CN113930477A (en) | Method for detecting autotrophic arsenic-oxidizing functional microorganisms contained in plant root endophytes | |
JP6566473B2 (en) | Novel microorganisms capable of resolving organic compounds having a cyclic ether structure and their use | |
CN112813154B (en) | Method for identifying functions and functional genes of endophyte community in plant root | |
CN115305226A (en) | Radiation-resistant acinetobacter ZJ-22 for degrading nicotine and producing hydrogen and application thereof | |
CN111621438B (en) | Wedner mannich bacillus LM-LZ separated from oxidation pond of pig farm and application thereof | |
CN113881582A (en) | Rhodotorula MF4 for removing heavy metal ions, microbial inoculum and application thereof | |
CN109576197B (en) | Acrylic acid degrading bacterium and application thereof | |
Saidu et al. | Isolation of photosynthetic bacteria from coal mining site having potential for nitrate removal | |
CN109593673B (en) | Flavobacterium JX-1 and application thereof in sewage treatment | |
CN103555633B (en) | The facultative chemoheterotrophy bacterium of the synchronous metabolism sulfide of one strain and nitrate | |
JP4314818B2 (en) | Bacteria for silver removal or recovery and silver removal or recovery method using the same | |
NL2036774A (en) | Co-culture product of aerobic denitrifying fungi, preparation method and application thereof | |
CN116925932B (en) | Trichoderma Guizhou fungus and application thereof | |
CN114032178B (en) | Acid-producing bacteria JC-H and application thereof, and culture and identification method of acid-producing bacteria JC-H | |
CN114456952B (en) | Chrysosporium and application thereof | |
CN103013874B (en) | Bacillus subtilis ds3 | |
CN114317380B (en) | Lactococcus lactis LXY-2 separated from soil of smelting plant and application thereof | |
JP2003038164A (en) | Method for screening highly ammonia-oxidizing bacteria |
Legal Events
Date | Code | Title | Description |
---|---|---|---|
PB01 | Publication | ||
PB01 | Publication | ||
SE01 | Entry into force of request for substantive examination | ||
SE01 | Entry into force of request for substantive examination |