CN113344859B - Method for quantifying capillary surrounding degree of gastric mucosa staining amplification imaging - Google Patents

Method for quantifying capillary surrounding degree of gastric mucosa staining amplification imaging Download PDF

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CN113344859B
CN113344859B CN202110534698.5A CN202110534698A CN113344859B CN 113344859 B CN113344859 B CN 113344859B CN 202110534698 A CN202110534698 A CN 202110534698A CN 113344859 B CN113344859 B CN 113344859B
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于红刚
董泽华
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Abstract

The invention discloses a method for quantifying the circumferential extent of a capillary for gastric mucosa staining amplification imaging, which comprises an image segmentation method, a single capillary extraction method and a section moment of inertia method. The image segmentation method is used for extracting a clear region and a microvascular integral image in the gastroscope image; the single capillary extraction method is used for extracting each single capillary from the whole capillary image; the section moment of inertia method is used for calculating the section moment of inertia of the single micro-blood vessel relative to the diagonal line of the minimum circumscribed rectangle. Finally, the surrounding degree coefficient of the microvessels is obtained by weighting the section moments of inertia of the microvessels relative to two diagonals of the minimum circumscribed rectangle of the microvessels, and then the surrounding degree grade of the microvessels is judged according to the surrounding degree coefficient.

Description

Method for quantifying capillary surrounding degree of gastric mucosa staining amplification imaging
Technical Field
The application relates to the technical field of image recognition methods in the medical field, in particular to a microvascular circularity quantification method for gastric mucosa staining amplification imaging.
Background
Gastric cancer is the fifth most common cancer in the world, which accounts for the third leading cause of cancer death. The advent of pigment endoscopy has established an endoscopic diagnostic method for early-stage cancer. The magnifying gastroscope and the electronic staining endoscope are combined for application, so that a tiny blood vessel structure and a tiny mucous membrane surface structure which cannot be observed by a common gastroscope can be observed, and conditions are provided for diagnosing early gastric cancer under the endoscope. The abnormal blood vessel is an important condition for diagnosing early gastric cancer under a dyeing amplification endoscope.
AkiraYokoyama classifies Microvascular Structures (MVs) into fine mesh, helical, lobular endocyclic-1, and lobular endocyclic-2 in Novel narrow-band imaging endofibrous framework for early vascular cancer. Is an empirical, generalized summary and is not described quantitatively.
Disclosure of Invention
The invention aims to provide a method for quantifying the microvascular looping degree of gastric mucosa staining amplification imaging, which aims at overcoming the defects of the prior art, is suitable for quantifying the gastric microvascular looping degree in a large scale, is convenient for judging the gastric microvascular form, has high matching degree with the diagnosis result of an endoscopist, has high reliability, and can provide powerful data support for the endoscopist to perform early gastric cancer diagnosis from the aspect of the microvascular looping degree.
In order to achieve the above object, the present invention provides a method for quantifying the circumferential extent of a capillary in gastric mucosal staining and amplification imaging, which is characterized in that: the method for quantifying the circumferential extent of the capillary comprises the following steps:
s1: inputting an original image to be quantified for gastric mucosa staining and amplifying imaging, and extracting a clear area image from the original image of the endoscope by adopting an image segmentation model;
s2: adopting an image segmentation model to segment a whole microvascular image from a clear region image;
s3: on the basis of the connected domain, filtering out noise points in the whole microvascular map through the area and the perimeter of the connected domain, calculating an external rectangle of the retained microvascular and removing other noise vessels within the range of the external rectangle;
s4: traversing each microvessel, and respectively calculating the section inertia moment of all pixel points on the microvessel to two diagonal lines of the minimum circumscribed rectangle;
s5: weighting the section moment of inertia obtained in step S4 to obtain a microvascular surrounding degree coefficient, and then giving a microvascular surrounding degree level determination result according to the threshold interval.
Further, in step S1, a trained U-Net + + segmentation model is used to extract a clear region from the gastroscope image obtained by the image segmentation method.
Further, in step S2, a trained D-LinkNet model is used to extract a whole microvascular image from the clear region image obtained in step S1.
Further, in step S3, on the basis of the connected domain, noise points in the entire microvascular map are filtered out by the area and perimeter of the connected domain, the minimum circumscribed horizontal rectangle of the retained microvasculature is calculated, and other noise vessels within the range of the circumscribed horizontal rectangle are removed. The method for eliminating other noise blood vessels in the minimum external horizontal rectangular range of the current capillary comprises the following steps:
s3.1: calculating the minimum external horizontal rectangle of the current microvascular and calculating the areas of all connected domains in the external rectangle;
s3.2: finding out the connected domain with the largest area except the background in the step S3.1 as the target micro-vessel and recording the connected domain of the micro-vessel;
s3.3: and traversing all pixel points in the minimum external horizontal rectangle obtained in the step S3.1, and judging whether each pixel point is in the connected domain of the target blood vessel in the step S3.2 by adopting an area sum judgment method. Assuming that the vertex coordinate of the microvascular connected domain is A1(x1,y1),A2(x2,y2)…An(xn,yn) The coordinate of a certain pixel point in the minimum external horizontal rectangle of the microvascular is P (x)i,yi) If the pixel point is in the target micro-vessel connected domain, the triangular area formed by the pixel point and all adjacent vertexes of the connected domain is equal to the polygonal area, and the following equation is satisfied
Figure BDA0003069345930000021
The pixel values for pixel points inside the microvascular minimum bounding horizontal rectangle that do not satisfy this equation are set as background pixels.
Further, in step S4, traversing each of the microvessels processed in step S3, calculating a minimum bounding rectangle thereof, and calculating coordinates of four vertices thereof as PA(xA,yA),PB(xB,yB),PC(xC,yC),PD(xD,yD) At any point in the microvasculature Oi(xi,yi) Then the cross-sectional moment of inertia with respect to the diagonal AC is calculated as
Figure BDA0003069345930000022
Wherein λ isACFor penalty factors, defined here
Figure BDA0003069345930000031
LACIs a point Pi(xi,yi) The distance to the diagonal line AC is such that,
Figure BDA0003069345930000032
area-is the minimum circumscribed rectangle area, and area is LAB·LAD
Similarly, the section inertia moment I relative to the diagonal BD can be calculatedBD
Further, in step S5, the moment of area inertia obtained in step S4 is weighted to obtain a microvascular encircling degree coefficient, and a microvascular encircling degree level determination result is given based on the threshold interval.
S5.1: calculating a microvascular ringing coefficient
ξ=ρAC·IACBD·IBD
Wherein the content of the first and second substances,
Figure BDA0003069345930000033
s5.2: judging surrounding degree grade, judging the surrounding degree grade of the microvessels according to the obtained surrounding degree coefficient xi, and when the surrounding degree coefficient xi is less than or equal to 0.72, the surrounding degree of the microvessels is normal; when the surrounding degree coefficient is 0.72 < xi < 1.04, the microvasculature is in general surrounding; when the surrounding degree coefficient xi is more than 1.04, the micro blood vessels are severely surrounded, i.e. the surrounding degree coefficient xi is more than 1.04
Figure BDA0003069345930000034
The invention has the following advantages and beneficial effects:
the method uses a cross-sectional moment of inertia method to quantify the surrounding degree of the microvessels, provides semi-automatic and automatic image analysis by developing a universal and repeatable program, quantifies the surrounding degree of the microvessels, and can assist an endoscopist to improve the reliability and accuracy of analysis and diagnosis of the early gastric cancer. According to the gastric microvascular morphological structure, each microvascular of an image is searched on the basis of a connected domain, the moment of inertia of the section of each microvascular is calculated, and finally a microvascular surrounding degree judgment interval with high diagnostic matching degree with an endoscopic physician is given. The method can realize full automation in the whole calculation process, greatly improves the rapidity of the quantization process and ensures high reliability.
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FIG. 1 is a schematic diagram of the method for quantifying the degree of gastric microvascular looping according to the present invention.
FIG. 2 is a schematic diagram of the method for establishing the gastric microvascular looping degree quantification of the present invention.
FIG. 3 is a schematic diagram illustrating whether a determination point is inside a polygon according to the present invention.
FIG. 4 is a schematic diagram of the calculation of the section moment of inertia.
Fig. 5 is a schematic diagram of the calculation of the moment of inertia of the cross section of the microvascular of the present invention.
Fig. 6 shows the calculation result of the sectional moment of inertia of the microvascular according to the present invention.
Detailed Description
The invention will be described in further detail with reference to the following figures and specific examples, without limiting the scope of the invention.
Referring to fig. 1, an implementation diagram of a method for quantifying a microvascular looping distance of a gastric mucosal staining amplification image is provided in the present invention. As shown in figure 1, the method for quantifying the circumferential extent of the microvasculature for the gastric mucosa staining and amplifying imaging comprises a cross-sectional moment of inertia method.
Referring to fig. 2, an embodiment of a method for quantifying a degree of a microvascular looping around a gastric mucosa for a stained and magnified imaging according to the present invention is taken as an example to illustrate the establishment of a process of the method for quantifying a degree of a gastric microvascular looping around a gastric mucosa according to the present invention, which includes the following steps S1-S5:
and step S1, extracting a clear region from the gastroscope image obtained by the image segmentation method by adopting the trained U-Net + + segmentation model.
And step S2, extracting a microvascular whole image from the clear region image obtained in step S1 by adopting a trained D-LinkNet model.
And step S3, on the basis of the connected domain, filtering out noise points in the whole microvascular map through the area and the perimeter of the connected domain, calculating the minimum external horizontal rectangle of the retained microvascular, and removing other noise vessels in the range of the external horizontal rectangle. The method for eliminating other noise blood vessels in the minimum external horizontal rectangular range of the current capillary comprises the following steps:
s3.1: calculating the minimum external horizontal rectangle of the current microvascular and calculating the areas of all connected domains in the external rectangle;
s3.2: finding out the connected domain with the largest area except the background in the step S3.1 as the target micro-vessel and recording the connected domain of the micro-vessel;
s3.3: and traversing all pixel points in the minimum external horizontal rectangle obtained in the step S3.1, and judging whether each pixel point is in the connected domain of the target blood vessel in the step S3.2 by adopting an area sum judgment method. As shown in FIG. 3, let A be the vertex coordinate of the connected capillary domain1(x1,y1),A2(x2,y2)…An(xn,yn) The coordinate of a certain pixel point in the minimum external horizontal rectangle of the microvascular is P (x)i,yi) If the pixel point is in the target micro-vessel connected domain, the triangular area formed by the pixel point and all adjacent vertexes of the connected domain is equal to the polygonal area, and the following equation is satisfied
Figure BDA0003069345930000051
The pixel values for pixel points inside the microvascular minimum bounding horizontal rectangle that do not satisfy this equation are set as background pixels.
Step S4 is to traverse each microvascular processed in step S3, calculate the minimum bounding rectangle thereof, and calculate the coordinates of four vertexes thereof as PA(xA,yA),PB(xB,yB),PC(xC,yC),PD(xD,yD) At any point in the microvasculature Oi(xi,yi). As shown in FIG. 4, the cross-sectional moment of inertia with respect to the diagonal line AC is calculated as
Figure BDA0003069345930000052
Wherein λ isACAs penalty factor, λ, as shown in FIG. 5ACIs calculated by the formula
Figure BDA0003069345930000053
LACIs a point Pi(xi,yi) The distance to the diagonal line AC is such that,
Figure BDA0003069345930000054
area-is the minimum circumscribed rectangle area, and area is LAB·LAD
Similarly, the section inertia moment I relative to the diagonal BD can be calculatedBD
Step S5 weights the moment of area inertia obtained in step S4 to obtain a microvascular encircling degree coefficient, and further gives a microvascular encircling degree level determination result according to the threshold interval, and the calculation result of the moment of area inertia is shown in fig. 6.
S5.1: calculating a microvascular ringing coefficient
ξ=ρAC·IACBD·IBD
Wherein the content of the first and second substances,
Figure BDA0003069345930000055
s5.2: judging surrounding degree grade, judging the surrounding degree grade of the microvessels according to the obtained surrounding degree coefficient xi, and when the surrounding degree coefficient xi is less than or equal to 0.72, the surrounding degree of the microvessels is normal; when the surrounding degree coefficient is 0.72 < xi < 1.04, the microvasculature is in general surrounding; when the surrounding degree coefficient xi >1.04 the microvessels were severely encircled, i.e.
Figure BDA0003069345930000061
The results are shown in tables 1 and 2.
TABLE 1
Picture frame 1 2 3 4 5 6
Moment of inertia 1.38 1.18 0.56 0.62 0.88 1.1
TABLE 2
Figure BDA0003069345930000062

Claims (3)

1. A microvascular looping degree quantification method for gastric mucosa staining amplification imaging is characterized by comprising the following steps: the method for quantifying the circumferential extent of the capillary comprises a section moment of inertia method; the section moment of inertia method is used for quantifying the surrounding degree of the microvessels and giving a determination result of the surrounding degree grade of the microvessels, a clear area in a gastroscope image is obtained through an image segmentation method, all the microvessels in the clear area are extracted through the image segmentation method to form a microvessel whole image, a single microvessel is extracted from the microvessel whole image through a 8-communication mode, then the minimum circumscribed rectangle of each microvessel is solved, and the section moment of inertia is calculated;
comprises the following steps:
s1: inputting an original image to be quantified for gastric mucosa staining and amplifying imaging, and extracting a clear area image from the original image of the endoscope by adopting an image segmentation model;
s2: adopting an image segmentation model to segment a whole microvascular image from a clear region image;
s3: on the basis of the connected domain, filtering noise points in the whole microvascular graph through the area and the perimeter of the connected domain, calculating the minimum external horizontal rectangle of the retained microvascular and removing other noise vessels in the range of the external horizontal rectangle;
s4: quantifying the surrounding degree of the blood vessel by adopting a section moment of inertia method for the single micro blood vessel obtained in the step S3,
s5: judging the surrounding degree grade of the microvessels according to xi obtained in the step S4;
weighting the section moment of inertia obtained in the step S4 to obtain a microvascular surrounding degree coefficient, and further giving a microvascular surrounding degree grade determination result according to the threshold interval, wherein the method comprises the following steps:
s5.1: calculating a microvascular ringing coefficient
ξ=ρAC·IACBD·IBD
Wherein the content of the first and second substances,
Figure FDA0003544347170000011
s5.2: judging the surrounding degree grade, and according to the obtained surrounding degree coefficient xi, carrying out blood microcirculation treatmentJudging the degree grade of the tube encircling degree, wherein when the encircling degree coefficient xi is less than or equal to 0.72, the encircling degree of the microvessels is normal; when the surrounding degree coefficient is 0.72 < xi < 1.04, the microvasculature is in general surrounding; when the surrounding degree coefficient xi is more than 1.04, the micro blood vessels are severely surrounded, i.e. the surrounding degree coefficient xi is more than 1.04
Figure FDA0003544347170000012
2. The method for quantifying the circumferential extent of the microvasculature through gastric mucosal staining and magnification imaging according to claim 1, wherein: in step S3, the method eliminates other noisy blood vessels within the minimum external horizontal rectangle of the current microvessel, and proceeds as follows:
s3.1: calculating the minimum external horizontal rectangle of the current microvascular and calculating the areas of all connected domains in the external rectangle;
s3.2: finding out the connected domain with the largest area except the background in the step S3.1 as the target micro-vessel and recording the connected domain of the micro-vessel;
s3.3: traversing all pixel points in the minimum external horizontal rectangle obtained in the step S3.1, and judging whether each pixel point is in the connected domain of the target blood vessel in the step S3.2 by adopting an area sum judgment method; assuming that the vertex coordinate of the microvascular connected domain is A1(x1,y1),A2(x2,y2)…An(xn,yn) The coordinate of a certain pixel point in the minimum external horizontal rectangle of the microvascular is P (x)i,yi) If the pixel point is in the target micro-vessel connected domain, the triangular area formed by the pixel point and all adjacent vertexes of the connected domain is the polygonal area, and the following equation is satisfied:
Figure FDA0003544347170000021
setting the pixel value of the pixel point which does not satisfy the equation in the minimal external horizontal rectangle of the microvessel as a background pixel;
step of traversingCalculating the minimum circumscribed rectangle of each microvessel after the processing of S3, and calculating the coordinates of four vertexes as PA(xA,yA),PB(xB,yB),PC(xC,yC),PD(xD,yD) At any point in the microvasculature Oi(xi,yi) Then, the cross-sectional moment of inertia with respect to the diagonal line AC is calculated as:
Figure FDA0003544347170000022
wherein λ isACFor penalty factors, defined here
Figure FDA0003544347170000023
LACIs a point Pi(xi,yi) The distance to the diagonal line AC is such that,
Figure FDA0003544347170000024
area-is the minimum circumscribed rectangle area, and area is LAB·LAD
Similarly, the section inertia moment I relative to the diagonal BD can be calculatedBD
3. The method for quantifying the circumferential extent of the microvasculature through gastric mucosal staining and amplified imaging according to claim 2, wherein: traversing each microvessel processed in the step S3, calculating the minimum bounding rectangle, and calculating the coordinates of four vertexes as PA(xA,yA),PB(xB,yB),PC(xC,yC),PD(xD,yD) At any point in the microvasculature Oi(xi,yi) Relative to diagonal ACThe formula for calculating the section moment of inertia is as follows:
Figure FDA0003544347170000031
wherein λ isACFor penalty factors, defined here
Figure FDA0003544347170000032
LACIs a point Pi(xi,yi) The distance to the diagonal line AC is such that,
Figure FDA0003544347170000033
area-is the minimum circumscribed rectangle area, and area is LAB·LAD
Similarly, the section inertia moment I relative to the diagonal BD can be calculatedBD
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