CN113186197B - Citrus CitPITP1 gene and application of nucleotide sequence thereof in prokaryotic vector promoter modification - Google Patents

Citrus CitPITP1 gene and application of nucleotide sequence thereof in prokaryotic vector promoter modification Download PDF

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CN113186197B
CN113186197B CN202110311370.7A CN202110311370A CN113186197B CN 113186197 B CN113186197 B CN 113186197B CN 202110311370 A CN202110311370 A CN 202110311370A CN 113186197 B CN113186197 B CN 113186197B
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citpitp1
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徐强
邬庆江
付佳玲
孙娟
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Huazhong Agricultural University
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    • C07K14/00Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof
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    • C12N15/00Mutation or genetic engineering; DNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purification; Use of hosts therefor
    • C12N15/09Recombinant DNA-technology
    • C12N15/63Introduction of foreign genetic material using vectors; Vectors; Use of hosts therefor; Regulation of expression
    • C12N15/70Vectors or expression systems specially adapted for E. coli
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    • C12N2830/00Vector systems having a special element relevant for transcription
    • C12N2830/34Vector systems having a special element relevant for transcription being a transcription initiation element

Abstract

The invention discloses a citrus CitPITP1 gene and application of a nucleotide sequence thereof in prokaryotic vector promoter modification, wherein the nucleotide sequence of the CitPITP1 gene is shown as SEQ ID NO: 1 is shown. The invention obtains the CitPITP1 gene from the genome of the citrus by screening, and discovers that a 64bp nucleotide sequence on the exon 4 of the CRAL _ TRIO structural domain of the gene coding CitPITP1 can drive the gene expression in prokaryotes from the CitPITP1 gene; therefore, the sequence containing CitPITP1_ key64 can be applied to vector promoter modification in the field of genetic engineering.

Description

Citrus CitPITP1 gene and application of nucleotide sequence thereof in prokaryotic vector promoter modification
Technical Field
The invention relates to the field of genetic engineering, in particular to a citrus CitPITP1 gene and application of a nucleotide sequence thereof in prokaryotic vector promoter modification.
Background
During the development of an organism, transcription is one of the basic processes in molecular biology, converting the genetic code in DNA into RNA molecules. Transcription initiation is a critical step that determines the location of the transcription initiation site (TSS) and the spatiotemporal expression pattern and intensity of transcription. The transcription initiation device (RNA polymerase) needs to recognize and bind to a specific DNA sequence in order to initiate transcription. This sequence, called the promoter, is a non-coding DNA sequence located generally upstream of the 5' end of the gene.
In the fields of genetic engineering and synthetic biology, promoters are one of the important elements for regulating the expression level of a target protein. Promoters can be classified into: a constitutive promoter; an inducible promoter; tissue specific promoters. Methods for cloning promoters can be roughly classified into 3 types: the genome library screening method includes screening promoter and PCR cloning promoter with promoter probe plasmid vector. In the species with the sequenced genome, specific primers can be designed to carry out PCR to directly obtain the promoter sequence of the target gene. And combining the RNA-Seq data of each tissue to obtain the space-time expression mode and strength of the promoter. The promoter sequence and reporter genes such as GUS and GFP are fused and stably transformed into plants for verification, and the cis-acting element analysis of databases such as PLACE, plantarCARE, EPD and the like is combined, so that the promoter sequence can be subjected to truncation analysis, and key elements are locked.
Promoters from different genes in an organism constitute a source of promoter data, which provides many functionally diverse promoter elements for bioengineering and synthetic biology such as: the T7 promoter to which T7 RNA polymerase specifically binds; a constitutive promoter CaMV35S, a Ubi promoter of a maize Ubiquitin gene; tissue specific promoters such as: arabidopsis floral organ development specific promoter leaf, tomato fruit specific promoter PG and ACO1, and 'TACACAT' conserved sequence of seed specific promoter; inducible promoters can be broadly classified into three main groups due to the wide variety of inducers:
1. physical factors induce such as light, temperature, trauma, etc.,
2. chemical induction such as salt concentration, estradiol, hormones and the like,
3. induction of biological factors such as pathogenic bacteria TALE response elements;
in addition to the discovery of promoters based on genes of organisms, artificial synthesis of promoters has also been reported. The promoter which meets the requirement of an accurate expression mode is synthesized by combining different types of cis-acting elements. The synthetic promoter with different response strength to TALE pathogenic factors is designed by analyzing the promoter sequences of CaMV35S, MMV, NOS, AtACT2, AtUBC9 and AtUBQ10, determining the shared cis-acting element (C-CRE), combining TALE response elements under the basic promoter frame containing TATA-box, adding different types and numbers of C-CRE and changing the relative positions of C-CRE and TATA-box.
The diversified gene functions and the expression modes thereof provide abundant resources for exploring various promoters. However, the target of promoter mining is usually focused on the upstream DNA sequence of the 5' end of the gene, and the gene sequence itself can be used as the promoter without research.
Disclosure of Invention
The invention aims to overcome the defects of the prior art and provides a citrus CitPITP1 gene and application of a nucleotide sequence thereof in prokaryotic vector promoter modification, the citrus CitPITP1 gene is obtained by screening, and a CDS sequence or a partial truncated sequence and a key64 sequence of the citrus CitPITP1 gene can be used as a promoter sequence in prokaryotes to drive gene expression, so that the source of promoter discovery is widened, a new visual angle is provided for promoter discovery, and theoretical support and basis are provided for selection of the promoter in vector modification in the fields of genetic engineering and synthetic biology.
In order to achieve the purpose, the invention designs a citrus CitPITP1 gene, the nucleotide sequence of which is shown as SEQ ID NO: 1 is shown.
Further, the nucleotide sequence of the CDS sequence in the CitPITP1 gene is shown as SEQ ID NO: 2, respectively.
The invention also provides a protein coded by the CitPITP1 gene, and the amino acid sequence of the protein is shown as SEQ ID NO: 3, respectively.
The invention also provides application of the nucleotide sequence of the CitPITP1 gene in the modification of prokaryotic vector promoters.
Furthermore, the application method is that any segment of nucleotide sequence truncated in the CitPITP1 gene sequence is used as a vector promoter for driving gene expression in prokaryotes.
Still further, the vector promoter contains a sequence of CitPITP1_ key 64.
Still further, the vector promoter is any one of the sequences of CitPITP1CDS, CitPITP1NO, CitPITP1Narrow1 and CitPITP1.1_ key64, and the nucleotide sequences thereof are shown in SEQ ID NO: 2. 4, 5 and 8.
Still further, the vector promoter is CitPITP1CDS, and the nucleotide sequence is shown in SEQ ID NO: 2, respectively.
The principle of the invention is as follows:
the invention finds that the CDS sequence of the citrus CitPITP1 gene is fused with an eGFP reporter gene, the CDS sequence is connected into a pTOPO-Blunt Simple Vector of Aidlab, E.coli DH5 alpha is transformed by heat shock, and sequencing shows that the obtained positive monoclonal sequence is correct. Positive monoclonal bacteria were enriched by centrifugation, and fluorescence emission from the bacteria was observed only in the excitation group (460-490 nm) of OLYMPUS SZX7 stereofluorescence microscope B. The CitPITP1 gene encodes a protein containing CRAL _ TRIO conserved Domain, and the result of sequence analysis and sequence truncation experiments by combining BPROM and BDGP promoter prediction analysis shows that a 64bp CitPITP1_ key64 sequence on the 4 th exon of the CitPITP1 gene is a prokaryotic promoter key sequence and is positioned in the CRAL _ TRIO coding sequence. The research results show that the CitPITP1_ key64 of the CitPITP1 can be used as a prokaryotic promoter to drive gene expression, and support is provided for vector promoter modification in the field of genetic engineering.
The invention has the beneficial effects that:
the invention obtains the CitPITP1 gene from the genome of the citrus by screening, and discovers that a 64bp nucleotide sequence on the exon 4 of the CRAL _ TRIO structural domain of the coding CitPITP1 gene can drive the gene expression in prokaryotes from the CitPITP1 gene; therefore, the sequence containing the CitPITP1_ key64 (the CitPITP1_ key64 sequence has the function of a promoter) can be applied to the transformation of a vector promoter in the field of genetic engineering.
Drawings
FIG. 1 is a schematic diagram of the gene structure of the citrus CitPITP1 gene
FIG. 2 is a diagram showing the analysis of the promoter activity of the CitPITP1 sequences with different truncated lengths.
FIG. 3 is a diagram of the analysis of the activity of the CitPITP1 prokaryotic promoter sequence CitPITP1_ key64 promoter.
Detailed Description
The present invention is described in further detail below with reference to specific examples so as to be understood by those skilled in the art.
Example 1
Obtaining of citrus CitPITP1 gene sequence and CDS
Picking mature leaf of GUAN-MIAN GUAN, quick freezing with liquid nitrogen, storing in-80 deg.C ultra-low temperature refrigerator, and extracting pulp total DNA by CTAB method. According to the citrus genome sequence, PCR is carried out by using Primer5 to design amplification primers of a CitPITP1 gene, TA cloning and sequencing are carried out on a PCR product, and the gene sequence is obtained as shown in SEQ ID NO: 1, the sequence of the amplification primer, the PCR system and the reaction program are as follows:
the primer sequence is as follows:
forward primer cittpitp 1 gene F: 5'-CACAACAAAGTCCAGCGTCG-3', respectively;
reverse primer cittpitp 1 gene R: 5'-ACAGCAACAGACAGTAGTTTCACC-3' are provided.
The PCR system was as follows:
Figure BDA0002989873040000041
the PCR reaction procedure was as follows:
Figure BDA0002989873040000051
picking fruit 150 days after MiYou Mixi GUAN flower, taking out pulp, quick freezing with liquid nitrogen, and storing in refrigerator at-80 deg.C; extracting pulp total RNA by adopting a CTAB method; mu.g of total RNA was used to synthesize cDNA using Novozan HiScript II Q RT Supermix for qPCR reverse transcription kit as follows:
the first step is as follows: genomic DNA removal:
RNase free ddH2O To 16μL
4×gRNA wiper Mix 4μL
template RNA 1μg
Gently sucking and stirring the mixture by a pipette, and reacting the mixture for 2min at 42 ℃.
The second step is that: preparing a reverse transcription reaction system:
5×HiScriptⅡqRT SuperMixⅡ 4μL
first-step reaction solution 16μL
The PCR reaction procedure was as follows:
25℃ 10min
50℃ 30min
85℃ 5min
12℃ 30min
using cDNA as a template, and using Primer5 to design a CitPITP1 cDNA specific amplification Primer for PCR according to the obtained CitPITP1 gene sequence, wherein the amplification Primer sequence, a PCR system and a reaction program are as follows:
the sequence is as follows:
forward primer cittpitp 1 cDNA F: 5'-CATTCGGAGTATCTCGTTGC-3', respectively; reverse primer cittpitp 1 cDNA R: 5' -CATAAACTTCGCCTATCTGCTT-3.
The PCR system was as follows:
Figure BDA0002989873040000061
the PCR reaction procedure was as follows:
Figure BDA0002989873040000062
the PCR reaction product was separated by agarose Gel electrophoresis and purified and recovered from the DNA Gel/PCR Purification Miniprep Kit from Biomiga to obtain CitPITP1 cDNA fragment.
According to the sequence of CitPITP1 cDNA fragment, PCR is carried out by using Primer5 to design specific amplification Primer, CitPITP1 cDNA is taken as a template, PCR reaction product is separated by agarose Gel electrophoresis and purified and recovered by DNA Gel/PCR Purification Miniprep Kit of Biomiga, and TA cloning and sequencing are carried out on the PCR product, thus obtaining the CitPITP1CDS fragment (without stop codon) with the nucleotide sequence shown as SEQ ID NO: 2, and the coded amino acid sequence is shown as SEQ ID NO: 3, the sequence of the amplification primer, the PCR system and the reaction program are as follows:
forward primer cittpitp 1CDS F: 5' -CGAGCTCATGTCGAGAAAATCACGTGGATTTG-3' (the SacI cleavage site is underlined)
Reverse primer cittpitp 1CDS R: 5' -AGAGCCACCACCGCCAGAGCCACCACCGCCAGAGCCACCACC GCCTTGTACTTGTTTCGCCATTGCAGCTT-3' (Linker sequence underlined).
The PCR system was as follows:
Figure BDA0002989873040000071
the PCR reaction procedure was as follows:
Figure BDA0002989873040000072
the bioedit software was used to compare SEQ ID NO: 1 and SEQ ID NO: 2, carrying out alignment analysis to determine the CitPITP1 gene structure. Converting SEQ ID NO: 3, the sequence is submitted to a PFAM website for domain prediction, and the structure shows that the CitPITP1 contains two domains of CRA L _ TRIO _ N and CRA L _ TRIO, and the gene structure and the domain schematic diagram are shown in FIG. 1.
Example 2
Analysis of the promoter Activity of the CitPITP1CDS sequence in prokaryotes
Selecting eGFP as a reporter gene, firstly, in order to obtain a CDS sequence of the eGFP reporter gene, any carrier containing eGFP can be used as a template for amplifying eGFP CDS, according to a plasmid pHSE401-35S-eGFP sequence, a plasmid pHSE401-35S-e GFP is used as a template, a Primer5 is used for designing a specific amplification Primer to carry out PCR, and the sequence of the amplification Primer, a PCR system and a reaction program are as follows:
forward primer eGFP extension fragment F: 5'-GCACATACAAATGGACGAACG-3', respectively; reverse primer eGFP extension fragment R: 5'-GCCTGAATGGCGAATGCTA-3' are provided.
The PCR system was as follows:
Figure BDA0002989873040000081
the PCR reaction procedure was as follows:
Figure BDA0002989873040000082
the PCR reaction product was separated by agarose gel electrophoresis and purified and recovered from the DNA gel/PCR Purification Miniprep Kit from Biomiga to obtain the eGFP extension fragment.
Secondly, designing a specific amplification Primer by using Primer5 to carry out PCR according to the eGFP CDS sequence in the plasmid pHSE401-35S-eGFP, taking an eGFP expansion fragment as a template, carrying out agarose Gel electrophoresis separation on a PCR reaction product, and purifying and recovering a DNA Gel/PCR Purification Miniprep Kit of biomaga to obtain an eGFP CDS fragment, wherein the amplification Primer sequence, the PCR system and the reaction program are as follows:
forward primer eGFP CDS F: 5' -GGCGGTGGTGGCTCTGGCGGTGGTGGCT CTGGCGGTGGTGGCTCTATGGTGAGCAAGGGCGAGGAGCT-3' (bottom)Underlined is Linker sequence) reverse primer eGFP CDS R: 5' -CCCAAGCTTTTACAGCTCGTCCTTCTTG
TACAGCT-3' (underlined hindIII cleavage site).
The PCR system was as follows:
Figure BDA0002989873040000091
the PCR reaction procedure was as follows:
Figure BDA0002989873040000092
and finally, a CitPITP1 CDS-eGFP fragment is obtained by using a fusion PCR method by taking the CitPITP1CDS and eGFP CDS fragments as templates and taking a forward primer CitPITP1CDS F and a reverse primer eGFP CDS R as forward and reverse primers. The specific PCR system and reaction procedure were as follows:
the PCR system was as follows:
Figure BDA0002989873040000101
the PCR reaction procedure was as follows:
Figure BDA0002989873040000102
the recovered CitPITP1 CDS-eGFP fragment was ligated with Aidlab pTOPO-Blunt Simple Vector to transform DH 5. alpha. E.coli by the following procedures:
the first step is as follows: preparation of connecting system
ptopO-Blunt Simple Vector 1μL
10×Enhancer 1μL
CitPITP1-eGFP fragment 60ng
ddH2O To 10μL
Preparing the system, gently sucking and beating the mixture by a pipette, uniformly mixing the mixture, centrifuging the mixture at a low speed for a short time, and incubating the mixture for 20min at the temperature of 25 ℃.
The second step is that: transformation of DH5 alpha E.coli
Adding 5 mu L of the connecting system into 50 mu L of DH5 alpha escherichia coli competence, sucking and beating gently and mixing uniformly, performing ice bath for 30min, performing 42-degree hot shock for 90s, performing ice bath for 2min, adding 400 mu L of LB without antibiotics, culturing for 45min at 37 ℃ and 200rpm, taking 200 mu L of bacterial liquid coated plate (containing 50 mu g/mL ampicillin), culturing overnight at 37 ℃, picking positive single clone for shaking bacteria, sending bacterial liquid to Scophyton Biotech Limited for sequencing, and confirming the sequence of the CitPITP1CDS sequence in the insert fragment CitPITP1 CDS-eGFP and SEQ ID NO: 2, the eGFP CDS sequence is identical to the eGFP sequence in plasmid pHSE 401-35S-eGFP.
Inoculating the monoclonal bacterial liquid into a fresh culture medium according to the ratio of 1:1000, culturing for 8h in an incubator at 37 ℃ and 200rpm, centrifugally enriching 500 microliter of positive monoclonal bacterial liquid, observing the fluorescence of the bacterial body in an OLYMPUS SZX7 stereovision fluorescence microscope B excitation group (460-490 nm), wherein the observation result is shown as CitPITP1-eGFP in figure 2, and the result shows that the CitPITP1CDS sequence can drive eGFP expression and generate fluorescence in prokaryotic escherichia coli.
Example 3 mining and application of CitPITP1 promoter key sequence
The sequence of the CitPIP 1 gene and the CDS sequence thereof are submitted to BPROM (http:// www.softberry.com/berry. phtltropic & group. programs & subgroup. gfindb) and BDGP (http:// www.fruitfly.org/SEQ _ tools/promoter. html) websites for prokaryotic promoter prediction, and the results show that the sequence contains-10 element (TGCTATAAT) and-35 element (TTGGTG) which are respectively positioned in SEQ ID NO: 2 at 396-404 and 376-381. Further adopting a promoter truncation analysis method to obtain 5 nucleotide sequences with different lengths, which are respectively positioned in the nucleotide sequences shown in SEQ ID NO: 2, 1-1008 full length CitPITP1CDS, 6-1008 CitPIP 1NO, 357-1008 CitPIP 1Narrow1, 376-1008 CitPIP 1Narrow2 and 396-1008 CitPIP 1Narrow3, wherein the gene sequences are respectively shown as 2, 4, 5, 6 and 7, and Primer5 is used for designing corresponding specific amplification primers, and the Primer sequences are as follows (the underlining is the SacI digestion site):
CitPITP1NO_F:5’-CGAGCTCGAGAAAATCACGTGGATTTG-3’,
CitPITP1Narrow_F1:5’-CGAGCTCAGAGGGGCAGATCAAGTAC-3’,
CitPITP1Narrow_F2:5’-CGAGCTCTTGGTGTATTGCATGGAAAA-3’,
CitPITP1Narrow_F3:5’-CGAGCTCTGCTATAATGAATTTGAACCCT-3’;
taking CitPITP1 CDS-eGFP as a template, taking CitPITP1NO _ F or CitPITP1Narrow _ F1 or CitPIP 1Narrow _ F2 or CitPIP 1Narrow _ F3 as a forward primer and taking eGFP CDR as a reverse primer to obtain amplicons fused with the eGFP and CitPITP1 sequences with different truncation lengths, namely CitPIP 1NO-eGFP, CitPIP 1Narrow1-eGFP, CitPIP 1Narrow2-eGFP and CitPIP 1Narrow3-eGFP respectively, and the specific PCR system and the reaction program are as follows:
the PCR system was as follows:
Figure BDA0002989873040000121
the PCR reaction procedure was as follows:
Figure BDA0002989873040000122
the amplicon was ligated into Aidlab pTOPO-Blunt Simple Vector, heat-shocked to transform DH 5. alpha. E.coli, the procedure was as in example 2, the positive clones were subjected to fluorescence detection, the promoter activity corresponding to the different truncated sequences was detected in fluorescence as shown in FIG. 2, the exposure time was 199ms, and the results showed that the fluorescence intensity was slightly reduced when the sequence was truncated from CitPITP1Narrow1 to CitPITP1Narrow2, and significantly reduced when the sequence was truncated from CitPITP1Narrow2 to CitPIP 1Narrow 3. Combining with the analysis of promoter prediction results, identifying the 64bp sequence of 357 and 420 as a key sequence of CitPITP1_ key64, such as SEQ ID NO: as shown in 8, CitPITP1_ key64 is independently fused with eGFP, a reverse primer is a reverse primer eGFP CDS R, and a forward primer, a specific PCR system and a specific reaction program are as follows:
Figure BDA0002989873040000131
the PCR system was as follows:
Figure BDA0002989873040000132
the PCR reaction procedure was as follows:
Figure BDA0002989873040000141
the CitPITP1_ key64-GFP amplicon is obtained, Aidlab pTOPO-Blunt Simple Vector is connected, DH5 alpha escherichia coli is transformed by heat shock, the specific method is the same as that in example 2, the positive clone thallus is subjected to fluorescence detection, the promoter activity fluorescence detection is shown in figure 3, and the exposure time is 999 ms. The results show that CitPITP1_ key64 also has prokaryotic promoter activity.
The results of the above analysis are combined to show that the CitPITP1_ key64 can drive eGFP expression to generate fluorescence in Escherichia coli, and the fluorescent protein is a common essential sequence of a prokaryotic promoter of the CitPITP1. The fluorescence intensity of CitPITP1 CDS-eGFP, CitPITP1NO-eGFP, CitPITP1Narrow1-eGFP and CitPITP1Narrow2-eGFP is strong, and the intensity of CitPITP1 CDS-eGFP is strongest; thus, the CitPITP1CDS sequence acts as a prokaryotic promoter with the best promoter activity.
Other parts not described in detail are prior art. Although the present invention has been described in detail with reference to the above embodiments, it is only a part of the embodiments of the present invention, not all of the embodiments, and other embodiments can be obtained without inventive step according to the embodiments, and the embodiments are within the scope of the present invention.
Sequence listing
<110> university of agriculture in Huazhong
<120> citrus CitPITP1 gene and application of nucleotide sequence thereof in prokaryotic vector promoter modification
<160> 8
<170> SIPOSequenceListing 1.0
<210> 1
<211> 3596
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<213> orange (Citrus grandis)
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gccacgcatt cggagtatct cgttgcattc ctccatttcc cattttttca ctcaatatcc 60
aattccaaat aattcttcgg tatttttttt ttctcattcg atttttaaaa tttggtttca 120
tttttatttt ctacagaaat gagcaaaact cgttgaagaa agaggtaaat tactacttcc 180
cagaattttt ttttttaaga ttccgttttg ccaaaaaaaa aaaacaaaaa tgatgttttt 240
gattcaggtt tggttgaaat tttgattatt ggatcgatac ttgtttcaga tttatttcta 300
attcagaaac gaaataatgg gaaatttttt tttcttttac ttgattttga cgtaaataaa 360
acttgatcaa ttagatgaga attgtttgag attgaagaaa atctggttga tttttctatg 420
tcaatttggc attcccataa tttaaattta tttgtgtttt tttttcgtga ttaataataa 480
tttagtaatt atggtgtaat acttgaaaca atttagctga ttattggcaa atttgtttcc 540
ctattttgat gatatcagaa gctttttgta taatccgaaa cgatgtcgag aaaatcacgt 600
ggatttggag cagagaaatc tctgtcgcct gaagagcagc aagccaaagt atgcatcaaa 660
atattgatta agatgttgtt actgacattt tttttttttg gttagttatt tggtggagat 720
tcattctttt ccaatgaatt tttctatcta tttttagttg taatttcgtg ttagttttgc 780
gcatttgcat cttcattatg gtttttccat ctaaataatt tgatatagcc tgtttgcttg 840
gatgcccaga gagttctttg tttctaaaat ctgaaaaaag gtaaatacgc agggaaatgt 900
gtctggttaa gagtttacag taataatagt tttcaattgt gaccctgaac taagtaaata 960
tcagagaaaa ataaatagtt cgttttgttg ttttctaaga tattataacc agattatatg 1020
tttgaaaaaa tctgaactgt attctacgtt ttaaagaatt gtattggcct catgaacgaa 1080
acagtctggc gattatttgg ttgaggattc ttgccctcat tagagtttga agggaaattt 1140
ttattttagt ctgtggagtc aaatgtaaaa aactctttag gagatcaact gattgaattt 1200
gatttcattc agataaatga ggttagaaag attattggtc ctattgctga taaatatcca 1260
gtactttgtt cggacgaatc aatatcaagg tacctcagag caaggaactg gcatacaaag 1320
aaggcaagca aaatgttagt agaaagcgtg aagtggaggc tggaatacaa gccagagaag 1380
atcgtatggg tatgcatata ttctttccag tagttttttc ttttttcttt tttgggtaaa 1440
ttaatctagt tttctcgaat atgtaaaaac ctttaaacaa agggaaaatg gaaagagata 1500
cttggttttg tttgtgaaaa ttcatcctat ttctgctgtt ggattgcaac atgcaatgct 1560
tgtttggcga ctagtaatct attactacaa catggatgct tagtaagctt ttgcaccata 1620
ctctttagct gtgctcttct aaactctgat ctatcaacta tgaaggataa aacaataaca 1680
ttaaagcaac ttacaagata ataattttct tttagctgct ggtactatat ctgcatattg 1740
ctgctatgta taacattaaa atcacctttt gttattgctt taggaagatg ttgctcgaga 1800
agctgaaaca gggaaacttt acagagctaa tttctgtgac aaattaggaa gacctgttct 1860
tataatgagg ccaggtttcc aggtagatag atccatattt ccatttggtt ctttcctctg 1920
ctgttattcc tatactgagt tcgatgatga gggattttaa caagttactg tgtcagaatt 1980
caagctcaac agaggggcag atcaagtact tggtgtattg catggaaaat gctataatga 2040
atttgaaccc tgatagggag caaatggtgt ggctaattga ttttcaaggg tggacaatgg 2100
ggagtgtgtc agtaaaagtg actcgggaaa cagctaatgt gttgcaaaat cattaccctg 2160
agagattggg cctggcaatc ctctataatc ccccaaaagt attcgaatct ttttggacgg 2220
tatctcactg ttcctttctt ttatataatc tttgcttgtc gagttgcggc attgtggtta 2280
tactataaat cttaatagag tcctctggag atgctcattt gctgctgagg agaacatgat 2340
tcagaccatt actgagcact gaatttgttt ttctaatgaa tgtaatttct tgttttactt 2400
gtcctctcaa caattttggc tgctgattgg aggaccactt tttcaatacc tgtctggaaa 2460
ggagtgagga atctctggtt atttccaatg tcgttgtatt gtctcgttct tttgcttcat 2520
tgatttcccc accaactttt ggccacctgg tactttcatt gctttggctt agctctgatg 2580
tgagacattg tctaagaaca ctctttaagg gtttcatgtg aattccgtat ctagagcttc 2640
ttcctctctg ttcttttggg agcattttcc atcctttatt tttctttctt ttttcatttg 2700
tatgaatgtg aagactaagc agtaatattg taaaaagatg gttagccttt gaaaatataa 2760
aacagctgag atggaaaagt cgtgccttct gctctggcaa cattttgtgt taggccactt 2820
cctgtttaca gtatgatgta ctttaccata tttataatac gagaaaagtt taagagaatt 2880
tttctttcat gcaggtggtg aaaccattcc ttgagccaaa gacatacaag aaagtgaggt 2940
ttgcctattc taatgatcct cagagccaga aaataatgga agccctcttt gatattaata 3000
aattggattc ttcttttggg ggaagaaaca gagttgggtt tgattatgaa gcatttgggc 3060
agcttatgag ggctgatgat aagaaaaagt ctgatttaat gaactccgga tgctcagtac 3120
caactgacca tctattagtt gcatctcagt catcacaatc cgagtcattg acatcagacc 3180
actgttcgga tgactctgat aacgagttag atgaggcaac ttccaccttg gaggatgttg 3240
atgagaaagt accggggctg aaactcggct atgatgatgt tccaaagagt gaagctgcaa 3300
tggcgaaaca agtacaatga cttgggatga aatcatgggg ccggttctgg tttctatgat 3360
ccttctttac aaattctgat cataccttaa tgcaatctta ttcagttagt ttcttgaaag 3420
caagattttg accgaaatct tgctgctata ataatgagta tcccaaacta tttaagcaga 3480
taggcgaagt ttatgtttat gtacagatgt cagctgggaa atatgataat tttccagggt 3540
tgattttagt aatatcagga aatgagagga aaaaaataaa aaaaaattaa ataaaa 3596
<210> 2
<211> 1008
<212> DNA
<213> orange (Citrus grandis)
<400> 2
atgtcgagaa aatcacgtgg atttggagca gagaaatctc tgtcgcctga agagcagcaa 60
gccaaaataa atgaggttag aaagattatt ggtcctattg ctgataaata tccagtactt 120
tgttcggacg aatcaatatc aaggtacctc agagcaagga actggcatac aaagaaggca 180
agcaaaatgt tagtagaaag cgtgaagtgg aggctggaat acaagccaga gaagatcgta 240
tgggaagatg ttgctcgaga agctgaaaca gggaaacttt acagagctaa tttctgtgac 300
aaattaggaa gacctgttct tataatgagg ccaggtttcc agaattcaag ctcaacagag 360
gggcagatca agtacttggt gtattgcatg gaaaatgcta taatgaattt gaaccctgat 420
agggagcaaa tggtgtggct aattgatttt caagggtgga caatggggag tgtgtcagta 480
aaagtgactc gggaaacagc taatgtgttg caaaatcatt accctgagag attgggcctg 540
gcaatcctct ataatccccc aaaagtattc gaatcttttt ggacggtggt gaaaccattc 600
cttgagccaa agacatacaa gaaagtgagg tttgcctatt ctaatgatcc tcagagccag 660
aaaataatgg aagccctctt tgatattaat aaattggatt cttcttttgg gggaagaaac 720
agagttgggt ttgattatga agcatttggg cagcttatga gggctgatga taagaaaaag 780
tctgatttaa tgaactccgg atgctcagta ccaactgacc atctattagt tgcatctcag 840
tcatcacaat ccgagtcatt gacatcagac cactgttcgg atgactctga taacgagtta 900
gatgaggcaa cttccacctt ggaggatgtt gatgagaaag taccggggct gaaactcggc 960
tatgatgatg ttccaaagag tgaagctgca atggcgaaac aagtacaa 1008
<210> 3
<211> 336
<212> PRT
<213> orange (Citrus grandis)
<400> 3
Met Ser Arg Lys Ser Arg Gly Phe Gly Ala Glu Lys Ser Leu Ser Pro
1 5 10 15
Glu Glu Gln Gln Ala Lys Ile Asn Glu Val Arg Lys Ile Ile Gly Pro
20 25 30
Ile Ala Asp Lys Tyr Pro Val Leu Cys Ser Asp Glu Ser Ile Ser Arg
35 40 45
Tyr Leu Arg Ala Arg Asn Trp His Thr Lys Lys Ala Ser Lys Met Leu
50 55 60
Val Glu Ser Val Lys Trp Arg Leu Glu Tyr Lys Pro Glu Lys Ile Val
65 70 75 80
Trp Glu Asp Val Ala Arg Glu Ala Glu Thr Gly Lys Leu Tyr Arg Ala
85 90 95
Asn Phe Cys Asp Lys Leu Gly Arg Pro Val Leu Ile Met Arg Pro Gly
100 105 110
Phe Gln Asn Ser Ser Ser Thr Glu Gly Gln Ile Lys Tyr Leu Val Tyr
115 120 125
Cys Met Glu Asn Ala Ile Met Asn Leu Asn Pro Asp Arg Glu Gln Met
130 135 140
Val Trp Leu Ile Asp Phe Gln Gly Trp Thr Met Gly Ser Val Ser Val
145 150 155 160
Lys Val Thr Arg Glu Thr Ala Asn Val Leu Gln Asn His Tyr Pro Glu
165 170 175
Arg Leu Gly Leu Ala Ile Leu Tyr Asn Pro Pro Lys Val Phe Glu Ser
180 185 190
Phe Trp Thr Val Val Lys Pro Phe Leu Glu Pro Lys Thr Tyr Lys Lys
195 200 205
Val Arg Phe Ala Tyr Ser Asn Asp Pro Gln Ser Gln Lys Ile Met Glu
210 215 220
Ala Leu Phe Asp Ile Asn Lys Leu Asp Ser Ser Phe Gly Gly Arg Asn
225 230 235 240
Arg Val Gly Phe Asp Tyr Glu Ala Phe Gly Gln Leu Met Arg Ala Asp
245 250 255
Asp Lys Lys Lys Ser Asp Leu Met Asn Ser Gly Cys Ser Val Pro Thr
260 265 270
Asp His Leu Leu Val Ala Ser Gln Ser Ser Gln Ser Glu Ser Leu Thr
275 280 285
Ser Asp His Cys Ser Asp Asp Ser Asp Asn Glu Leu Asp Glu Ala Thr
290 295 300
Ser Thr Leu Glu Asp Val Asp Glu Lys Val Pro Gly Leu Lys Leu Gly
305 310 315 320
Tyr Asp Asp Val Pro Lys Ser Glu Ala Ala Met Ala Lys Gln Val Gln
325 330 335
<210> 4
<211> 1003
<212> DNA
<213> orange (Citrus grandis)
<400> 4
gagaaaatca cgtggatttg gagcagagaa atctctgtcg cctgaagagc agcaagccaa 60
aataaatgag gttagaaaga ttattggtcc tattgctgat aaatatccag tactttgttc 120
ggacgaatca atatcaaggt acctcagagc aaggaactgg catacaaaga aggcaagcaa 180
aatgttagta gaaagcgtga agtggaggct ggaatacaag ccagagaaga tcgtatggga 240
agatgttgct cgagaagctg aaacagggaa actttacaga gctaatttct gtgacaaatt 300
aggaagacct gttcttataa tgaggccagg tttccagaat tcaagctcaa cagaggggca 360
gatcaagtac ttggtgtatt gcatggaaaa tgctataatg aatttgaacc ctgataggga 420
gcaaatggtg tggctaattg attttcaagg gtggacaatg gggagtgtgt cagtaaaagt 480
gactcgggaa acagctaatg tgttgcaaaa tcattaccct gagagattgg gcctggcaat 540
cctctataat cccccaaaag tattcgaatc tttttggacg gtggtgaaac cattccttga 600
gccaaagaca tacaagaaag tgaggtttgc ctattctaat gatcctcaga gccagaaaat 660
aatggaagcc ctctttgata ttaataaatt ggattcttct tttgggggaa gaaacagagt 720
tgggtttgat tatgaagcat ttgggcagct tatgagggct gatgataaga aaaagtctga 780
tttaatgaac tccggatgct cagtaccaac tgaccatcta ttagttgcat ctcagtcatc 840
acaatccgag tcattgacat cagaccactg ttcggatgac tctgataacg agttagatga 900
ggcaacttcc accttggagg atgttgatga gaaagtaccg gggctgaaac tcggctatga 960
tgatgttcca aagagtgaag ctgcaatggc gaaacaagta caa 1003
<210> 5
<211> 652
<212> DNA
<213> orange (Citrus grandis)
<400> 5
agaggggcag atcaagtact tggtgtattg catggaaaat gctataatga atttgaaccc 60
tgatagggag caaatggtgt ggctaattga ttttcaaggg tggacaatgg ggagtgtgtc 120
agtaaaagtg actcgggaaa cagctaatgt gttgcaaaat cattaccctg agagattggg 180
cctggcaatc ctctataatc ccccaaaagt attcgaatct ttttggacgg tggtgaaacc 240
attccttgag ccaaagacat acaagaaagt gaggtttgcc tattctaatg atcctcagag 300
ccagaaaata atggaagccc tctttgatat taataaattg gattcttctt ttgggggaag 360
aaacagagtt gggtttgatt atgaagcatt tgggcagctt atgagggctg atgataagaa 420
aaagtctgat ttaatgaact ccggatgctc agtaccaact gaccatctat tagttgcatc 480
tcagtcatca caatccgagt cattgacatc agaccactgt tcggatgact ctgataacga 540
gttagatgag gcaacttcca ccttggagga tgttgatgag aaagtaccgg ggctgaaact 600
cggctatgat gatgttccaa agagtgaagc tgcaatggcg aaacaagtac aa 652
<210> 6
<211> 633
<212> DNA
<213> orange (Citrus grandis)
<400> 6
ttggtgtatt gcatggaaaa tgctataatg aatttgaacc ctgataggga gcaaatggtg 60
tggctaattg attttcaagg gtggacaatg gggagtgtgt cagtaaaagt gactcgggaa 120
acagctaatg tgttgcaaaa tcattaccct gagagattgg gcctggcaat cctctataat 180
cccccaaaag tattcgaatc tttttggacg gtggtgaaac cattccttga gccaaagaca 240
tacaagaaag tgaggtttgc ctattctaat gatcctcaga gccagaaaat aatggaagcc 300
ctctttgata ttaataaatt ggattcttct tttgggggaa gaaacagagt tgggtttgat 360
tatgaagcat ttgggcagct tatgagggct gatgataaga aaaagtctga tttaatgaac 420
tccggatgct cagtaccaac tgaccatcta ttagttgcat ctcagtcatc acaatccgag 480
tcattgacat cagaccactg ttcggatgac tctgataacg agttagatga ggcaacttcc 540
accttggagg atgttgatga gaaagtaccg gggctgaaac tcggctatga tgatgttcca 600
aagagtgaag ctgcaatggc gaaacaagta caa 633
<210> 7
<211> 613
<212> DNA
<213> orange (Citrus grandis)
<400> 7
tgctataatg aatttgaacc ctgataggga gcaaatggtg tggctaattg attttcaagg 60
gtggacaatg gggagtgtgt cagtaaaagt gactcgggaa acagctaatg tgttgcaaaa 120
tcattaccct gagagattgg gcctggcaat cctctataat cccccaaaag tattcgaatc 180
tttttggacg gtggtgaaac cattccttga gccaaagaca tacaagaaag tgaggtttgc 240
ctattctaat gatcctcaga gccagaaaat aatggaagcc ctctttgata ttaataaatt 300
ggattcttct tttgggggaa gaaacagagt tgggtttgat tatgaagcat ttgggcagct 360
tatgagggct gatgataaga aaaagtctga tttaatgaac tccggatgct cagtaccaac 420
tgaccatcta ttagttgcat ctcagtcatc acaatccgag tcattgacat cagaccactg 480
ttcggatgac tctgataacg agttagatga ggcaacttcc accttggagg atgttgatga 540
gaaagtaccg gggctgaaac tcggctatga tgatgttcca aagagtgaag ctgcaatggc 600
gaaacaagta caa 613
<210> 8
<211> 64
<212> DNA
<213> orange (Citrus grandis)
<400> 8
agaggggcag atcaagtact tggtgtattg catggaaaat gctataatga atttgaaccc 60
tgat 64

Claims (2)

1. The application of a vector promoter in driving gene expression in prokaryotes is characterized in that: the carrier promoter is any one of sequences CitPITP1CDS, CitPITP1NO, CitPITP1Narrow1 and CitPITP1.1_ key64, and the nucleotide sequences of the carrier promoter are shown in SEQ ID NO: 2. 4, 5 and 8.
2. Use according to claim 1, characterized in that: the carrier promoter is CitPITP1CDS, and the nucleotide sequence is shown in SEQ ID NO: 2, respectively.
CN202110311370.7A 2021-03-24 2021-03-24 Citrus CitPITP1 gene and application of nucleotide sequence thereof in prokaryotic vector promoter modification Active CN113186197B (en)

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Citations (2)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
CN103642821A (en) * 2013-12-02 2014-03-19 广东省农业科学院环境园艺研究所 Phalaenopsis PhEFP1 gene, protein coded by same and promoter thereof
CN107488659A (en) * 2017-09-08 2017-12-19 华中农业大学 A kind of sequence related to orange peel reddish yellow color trait and its application

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ES2814027T3 (en) * 2006-12-27 2021-03-25 Abion Inc Gene expression data processing and analysis procedure to identify endogenous reference genes
CN106749600B (en) * 2016-12-22 2020-11-17 杭州帕匹德科技有限公司 Casein phosphopeptide tag peptide and application thereof
CN106636099B (en) * 2017-02-08 2019-07-19 华中农业大学 A kind of citrusfruit specificity promoter and application

Patent Citations (2)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
CN103642821A (en) * 2013-12-02 2014-03-19 广东省农业科学院环境园艺研究所 Phalaenopsis PhEFP1 gene, protein coded by same and promoter thereof
CN107488659A (en) * 2017-09-08 2017-12-19 华中农业大学 A kind of sequence related to orange peel reddish yellow color trait and its application

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