CN112979804A - An isolated binding protein comprising a procalcitonin antigen binding domain - Google Patents

An isolated binding protein comprising a procalcitonin antigen binding domain Download PDF

Info

Publication number
CN112979804A
CN112979804A CN201911307723.5A CN201911307723A CN112979804A CN 112979804 A CN112979804 A CN 112979804A CN 201911307723 A CN201911307723 A CN 201911307723A CN 112979804 A CN112979804 A CN 112979804A
Authority
CN
China
Prior art keywords
complementarity determining
determining region
independently selected
region cdr
cdr
Prior art date
Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
Granted
Application number
CN201911307723.5A
Other languages
Chinese (zh)
Other versions
CN112979804B (en
Inventor
崔鹏
何志强
孟媛
钟冬梅
马秋燕
游辉
覃婷
Current Assignee (The listed assignees may be inaccurate. Google has not performed a legal analysis and makes no representation or warranty as to the accuracy of the list.)
Dongguan Pengzhi Biotechnology Co Ltd
Original Assignee
Dongguan Pengzhi Biotechnology Co Ltd
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Application filed by Dongguan Pengzhi Biotechnology Co Ltd filed Critical Dongguan Pengzhi Biotechnology Co Ltd
Priority to CN201911307723.5A priority Critical patent/CN112979804B/en
Publication of CN112979804A publication Critical patent/CN112979804A/en
Application granted granted Critical
Publication of CN112979804B publication Critical patent/CN112979804B/en
Active legal-status Critical Current
Anticipated expiration legal-status Critical

Links

Images

Classifications

    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07KPEPTIDES
    • C07K16/00Immunoglobulins [IGs], e.g. monoclonal or polyclonal antibodies
    • C07K16/18Immunoglobulins [IGs], e.g. monoclonal or polyclonal antibodies against material from animals or humans
    • C07K16/26Immunoglobulins [IGs], e.g. monoclonal or polyclonal antibodies against material from animals or humans against hormones ; against hormone releasing or inhibiting factors
    • GPHYSICS
    • G01MEASURING; TESTING
    • G01NINVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
    • G01N33/00Investigating or analysing materials by specific methods not covered by groups G01N1/00 - G01N31/00
    • G01N33/48Biological material, e.g. blood, urine; Haemocytometers
    • G01N33/50Chemical analysis of biological material, e.g. blood, urine; Testing involving biospecific ligand binding methods; Immunological testing
    • G01N33/74Chemical analysis of biological material, e.g. blood, urine; Testing involving biospecific ligand binding methods; Immunological testing involving hormones or other non-cytokine intercellular protein regulatory factors such as growth factors, including receptors to hormones and growth factors
    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07KPEPTIDES
    • C07K2317/00Immunoglobulins specific features
    • C07K2317/50Immunoglobulins specific features characterized by immunoglobulin fragments
    • C07K2317/56Immunoglobulins specific features characterized by immunoglobulin fragments variable (Fv) region, i.e. VH and/or VL
    • C07K2317/565Complementarity determining region [CDR]
    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07KPEPTIDES
    • C07K2317/00Immunoglobulins specific features
    • C07K2317/90Immunoglobulins specific features characterized by (pharmaco)kinetic aspects or by stability of the immunoglobulin
    • C07K2317/92Affinity (KD), association rate (Ka), dissociation rate (Kd) or EC50 value
    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07KPEPTIDES
    • C07K2317/00Immunoglobulins specific features
    • C07K2317/90Immunoglobulins specific features characterized by (pharmaco)kinetic aspects or by stability of the immunoglobulin
    • C07K2317/94Stability, e.g. half-life, pH, temperature or enzyme-resistance
    • GPHYSICS
    • G01MEASURING; TESTING
    • G01NINVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
    • G01N2333/00Assays involving biological materials from specific organisms or of a specific nature
    • G01N2333/435Assays involving biological materials from specific organisms or of a specific nature from animals; from humans
    • G01N2333/575Hormones
    • G01N2333/585Calcitonins
    • GPHYSICS
    • G01MEASURING; TESTING
    • G01NINVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
    • G01N2800/00Detection or diagnosis of diseases
    • G01N2800/26Infectious diseases, e.g. generalised sepsis
    • GPHYSICS
    • G01MEASURING; TESTING
    • G01NINVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
    • G01N2800/00Detection or diagnosis of diseases
    • G01N2800/70Mechanisms involved in disease identification
    • G01N2800/7095Inflammation

Landscapes

  • Health & Medical Sciences (AREA)
  • Life Sciences & Earth Sciences (AREA)
  • Chemical & Material Sciences (AREA)
  • Molecular Biology (AREA)
  • Immunology (AREA)
  • Engineering & Computer Science (AREA)
  • General Health & Medical Sciences (AREA)
  • Medicinal Chemistry (AREA)
  • Hematology (AREA)
  • Organic Chemistry (AREA)
  • Endocrinology (AREA)
  • Urology & Nephrology (AREA)
  • Biomedical Technology (AREA)
  • Biochemistry (AREA)
  • Physics & Mathematics (AREA)
  • Cell Biology (AREA)
  • Analytical Chemistry (AREA)
  • Food Science & Technology (AREA)
  • Microbiology (AREA)
  • General Physics & Mathematics (AREA)
  • Pathology (AREA)
  • Biophysics (AREA)
  • Genetics & Genomics (AREA)
  • Proteomics, Peptides & Aminoacids (AREA)
  • Biotechnology (AREA)
  • Peptides Or Proteins (AREA)

Abstract

The present invention relates to an isolated binding protein comprising a Procalcitonin (PCT) antigen binding domain, and studies on the preparation, use, etc. of the binding protein. The binding protein has strong activity and high affinity with human procalcitonin, and can be widely applied to the detection of procalcitonin.

Description

An isolated binding protein comprising a procalcitonin antigen binding domain
Technical Field
The present invention relates to the field of immunological techniques, and in particular, to an isolated binding protein comprising a procalcitonin antigen binding domain.
Background
The Procalcitonin (PCT) coding gene is positioned on the No. 11 human chromosome, consists of 6 exons and 5 introns, has the total length of 7600bp, has the length of 2800bp, is translated into procalcitonin precursors in the rough endoplasmic reticulum of cells beside thyroid follicles after being transcribed, and is further modified and processed under the action of endogenous polypeptide enzyme to generate a final product PCT of 116 amino acids.
PCT is mainly produced under the stimulation of bacterial toxin and inflammatory cell factors, serum PCT is not generally increased under a non-infectious inflammation state, the generation of PCT is very fast in the infectious inflammation process, the PCT is increased within 2-6 hours of an endotoxin stimulation reaction, and the blood PCT of a serious systemic infected person can be up to 1000 times within 24 hours. PCT is widely accepted as a new infectious inflammation marker at present, and not only can early identify whether bacterial infection exists, but also is an early warning and diagnostic index of sepsis. In addition, many studies have found that PCT can be ectopically produced and abnormally elevated levels in addition to severe bacterial infections, fungal and parasitic infections, and in the development of Multiple Organ Dysfunction Syndrome (MODS). PCT concentrations are usually positively correlated with the extent of infection and the correlation is high, and its rise or fall directly reflects the tendency of the disease to worsen or improve, providing a good prognostic indicator. Therefore, the detection of PCT has important reference values in the differential diagnosis, prognosis judgment, curative effect observation, reasonable guidance and application of antibacterial drugs and the like of infectious diseases, sepsis, MODS and the like.
In the early days, the detection of PCT mainly uses a gel chromatography method and a high performance liquid chromatography method, and the two methods are time-consuming, have high operation requirements, are difficult to automate and are expensive. In recent years, PCT is often detected by an immunological method having advantages of high specificity, high sensitivity, and easy handling, and the method includes a double antibody sandwich immunochemical method, a colloidal gold method, a radioimmunoassay, and the like. All immunological methods need to use specific monoclonal antibodies of PCT, the content of PCT in plasma of healthy people is extremely low and is below 0.2ng/mL, so that the requirements on parameters such as the affinity of the prepared antibodies are high, the PCT specific antibodies with good affinity are prepared, key raw materials are provided for immunodetection of PCT, and the method has important significance for expanding the clinical application of PCT and reducing the medical cost.
Disclosure of Invention
In view of the above, the present invention aims to provide an isolated binding protein comprising a Procalcitonin (PCT) antigen binding domain, which has good activity and high affinity, and a preparation method and use thereof.
The present invention provides an isolated binding protein comprising a procalcitonin antigen-binding domain, said antigen-binding domain comprising at least one complementarity determining region of an amino acid sequence; or conservative variants obtained by conservative mutation of one or more amino acid additions, deletions, substitutions or modifications to the following amino acid sequences, said conservative variants having at least 80% sequence identity with the following amino acid sequences:
CDR-VH1 is G-X1-S-X2-T-S-D-Y-X3-W-H, wherein,
x1 is F, V or L, X2 is L, V or I, X3 is S or T;
the CDR-VH2 is Y-X1-D-F-R-G-S-T-X2-Y-N-P-S-X3-X4-S,
x1 is L, V or I, X2 is D, K or N, X3 is I or L, X4 is K or R;
CDR-VH3 is A-X1-R-G-S-X2-D, wherein,
x1 is K or R, X2 is Y, V or F;
the CDR-VL1 is R-S-S-X1-S-X2-H-S-N-G-X3-T-Y-X4-F, wherein,
x1 is R or K, X2 is IL, II, LL or LI, X3 is L, V or I, X4 is I or L;
the complementarity determining region CDR-VL2 is X1-M-X2-N-X3-A-S, wherein,
x1 is N, Q or H, X2 is T or S, X3 is I, V or L;
the CDR-VL3 is A-X1-N-X2-E-X3-P-W-T, wherein,
x1 is Q or N, X2 is I or L, and X3 is L or I.
Further, the present invention provides an isolated binding protein comprising a procalcitonin antigen-binding domain, wherein:
in the complementarity determining region CDR-VH1, X3 is S;
in the complementarity determining region CDR-VH2, X4 is R;
in the complementarity determining region CDR-VH3, X1 is R;
in the complementarity determining region CDR-VL1, X1 is K;
in the complementarity determining region CDR-VL2, X2 is S;
in the complementarity determining region CDR-VL3, X1 is Q;
in some embodiments, in the complementarity determining regions CDR-VH1, X1 is independently selected from F;
in some embodiments, in the complementarity determining regions CDR-VH1, X1 is independently selected from V;
in some embodiments, in the complementarity determining region CDR-VH1, X1 is independently selected from L;
in some embodiments, in the complementarity determining region CDR-VH1, X2 is independently selected from L;
in some embodiments, in the complementarity determining regions CDR-VH1, X2 is independently selected from V;
in some embodiments, in the complementarity determining regions CDR-VH1, X2 is independently selected from I;
in some embodiments, in the complementarity determining region CDR-VH2, X1 is independently selected from L;
in some embodiments, in the complementarity determining regions CDR-VH2, X1 is independently selected from V;
in some embodiments, in the complementarity determining regions CDR-VH2, X1 is independently selected from I;
in some embodiments, in the complementarity determining regions CDR-VH2, X2 is independently selected from D;
in some embodiments, in the complementarity determining region CDR-VH2, X2 is independently selected from K;
in some embodiments, in the complementarity determining regions CDR-VH2, X2 is independently selected from N;
in some embodiments, in the complementarity determining regions CDR-VH2, X3 is independently selected from I;
in some embodiments, in the complementarity determining region CDR-VH2, X3 is independently selected from L;
in some embodiments, in the complementarity determining regions CDR-VH3, X2 is independently selected from Y;
in some embodiments, in the complementarity determining regions CDR-VH3, X2 is independently selected from V;
in some embodiments, in the complementarity determining regions CDR-VH3, X2 is independently selected from F;
in some embodiments, in the complementarity determining region CDR-VL1, X2 is independently selected from IL;
in some embodiments, in the complementarity determining region CDR-VL1, X2 is independently selected from II;
in some embodiments, in the complementarity determining region CDR-VL1, X2 is independently selected from LL;
in some embodiments, in the complementarity determining region CDR-VL1, X2 is independently selected from LI;
in some embodiments, in the complementarity determining region CDR-VL1, X3 is independently selected from L;
in some embodiments, in the complementarity determining region CDR-VL1, X3 is independently selected from V;
in some embodiments, in the complementarity determining region CDR-VL1, X3 is independently selected from I;
in some embodiments, in the complementarity determining region CDR-VL1, X4 is independently selected from I;
in some embodiments, in the complementarity determining region CDR-VL1, X4 is independently selected from L;
in some embodiments, in the complementarity determining region CDR-VL2, X1 is independently selected from N;
in some embodiments, in the complementarity determining region CDR-VL2, X1 is independently selected from Q;
in some embodiments, in the complementarity determining region CDR-VL2, X1 is independently selected from H;
in some embodiments, in the complementarity determining region CDR-VL2, X3 is independently selected from I;
in some embodiments, in the complementarity determining region CDR-VL2, X3 is independently selected from V;
in some embodiments, in the complementarity determining region CDR-VL2, X3 is independently selected from L;
in some embodiments, in the complementarity determining region CDR-VL3, X2 is independently selected from I;
in some embodiments, in the complementarity determining region CDR-VL3, X2 is independently selected from L;
in some embodiments, in the complementarity determining region CDR-VL3, X3 is independently selected from L;
in some embodiments, in the complementarity determining region CDR-VL3, X3 is independently selected from I.
In some embodiments, the mutation site of each complementarity determining region is selected from any one of the following sequences:
Figure BDA0002323615230000031
Figure BDA0002323615230000041
Figure BDA0002323615230000051
alternatively to this, the first and second parts may,
in the complementarity determining region CDR-VH1, X3 is T;
in the complementarity determining region CDR-VH2, X4 is K;
in the complementarity determining region CDR-VH3, X1 is K;
in the complementarity determining region CDR-VL1, X1 is R;
in the complementarity determining region CDR-VL2, X2 is T;
in the complementarity determining region CDR-VL3, X1 is N;
and the mutation site of each complementarity determining region is selected from any one of the following sequences:
Figure BDA0002323615230000052
in some embodiments, the binding protein has a K with PCTD≤8.72×10-10Affinity of mol/L.
In some embodiments, the binding protein comprises at least 3 CDRs, optionally 3 CDRs from a heavy chain, or 3 CDRs from a light chain.
In some embodiments, the binding protein comprises at least 6 CDRs.
In some embodiments, the binding protein is a monoclonal antibody, a nanobody, a F (ab')2Fab', Fab, Fv, scFv (sc ═ single chain), diabodies (diabodies), or minimal recognition units of antibodies.
In some embodiments, the binding protein comprises light chain framework regions FR-L1, FR-L2, FR-L3 and FR-L4 in the sequence shown in SEQ ID NOS: 1-4, and/or heavy chain framework regions FR-H1, FR-H2, FR-H3 and FR-H4 in the sequence shown in SEQ ID NOS: 5-8.
In some embodiments, the binding protein further comprises an antibody constant region sequence.
In some embodiments, the constant region sequence is selected from the group consisting of constant region sequences of one of IgG1, IgG2, IgG3, IgG4, IgA, IgM, IgE, IgD.
In some embodiments, the species of the constant region is derived from a cow, horse, dairy cow, pig, sheep, goat, mouse, dog, cat, rabbit, camel, donkey, deer, mink, chicken, duck, goose, turkey, chicken fighting, or human.
In some embodiments, the constant region is derived from a mouse.
In some embodiments, the light chain constant region sequence is set forth in SEQ ID NO 9 and the heavy chain constant region sequence is set forth in SEQ ID NO 10.
In some embodiments, the binding protein is a whole antibody comprising a variable region and a constant region.
In another aspect, the invention also relates to an isolated nucleic acid molecule, which is DNA or RNA, encoding a binding protein as described above.
In another aspect, the invention also relates to a vector comprising a nucleic acid molecule provided by the invention.
In another aspect, the invention also relates to a host cell transformed with a nucleic acid molecule or vector as described above.
In some embodiments, the host cell includes bacterial, eukaryotic, yeast and baculovirus systems.
In some embodiments, the host cell is a eukaryotic cell, further a mammalian cell.
Mammalian cell lines useful for expression in the art include: chinese Hamster Ovary (CHO) cells, HeLa cells, melengus mouse kidney cells, mouse myeloma cells.
In some embodiments, the host cell is a CHO cell.
According to one aspect of the invention, the invention also relates to a method for producing a binding protein as described above, said method comprising the steps of:
culturing the host cell as described above in suitable culture conditions and recovering the binding protein as described above from the culture medium or from the cultured host cell.
In another aspect, the invention also relates to the use of a binding protein as described above for the preparation of a product for the diagnosis of a disease associated with a change in PCT levels.
In some embodiments, the disease associated with a change in PCT levels is an infectious disease, sepsis, Systemic Inflammatory Response Syndrome (SIRS), multiple organ failure syndrome (MODS).
In some embodiments, the infectious disease comprises a bacterial infection, a fungal infection, or a parasitic infection.
In another aspect, the present invention also relates to a method of detecting PCT in a test sample, comprising:
a) contacting PCT antibody in the test sample with a binding protein of the invention under suitable reaction conditions to form an immune complex;
b) detecting the presence of the immune complex.
In the above embodiments, the presence of said immune complex in step b) is indicative of the presence of said PCT antigen in said test sample.
In the above embodiments, the binding protein may be labeled with an indicator showing signal intensity to allow the immune complex to be easily detected.
In some embodiments, in step a), a second antibody is further included in the immune complex, the second antibody binding to the binding protein;
in this embodiment, the binding protein is in the form of a first antibody that forms a partner antibody with the second antibody for binding to a different epitope of PCT;
the second antibody may be labeled with an indicator showing the intensity of the signal so that the complex is easily detected.
In some embodiments, in step a), a second antibody is further included in the immune complex, the second antibody binding to the PCT antigen;
in this embodiment, the binding protein serves as an antigen for the second antibody, which may be labeled with an indicator of signal intensity to allow the complex to be readily detected.
Further, another aspect of the present invention relates to a detection reagent or kit comprising the binding protein as described above.
In some embodiments, the reagent or kit further comprises one or more of a pharmaceutically acceptable excipient, buffer, stabilizer, diluent, or carrier.
The separated binding protein provided by the invention has strong activity, can specifically recognize and bind PCT protein, has high affinity, and has better affinity compared with the PCT antibody commonly used in the market at present.
Drawings
In order to more clearly illustrate the embodiments of the present invention or the technical solutions in the prior art, the drawings used in the description of the embodiments or the prior art will be briefly described below, and it is obvious that the drawings in the following description are some embodiments of the present invention, and other drawings can be obtained by those skilled in the art without creative efforts.
FIG. 1 is an electrophoretogram of a monoclonal antibody against human PCT in example 1 of the present invention.
Detailed Description
The present invention may be understood more readily by reference to the following description of certain embodiments of the invention and the detailed description of the examples included therein.
Before the present invention is further described, it is to be understood that this invention is not limited to particular embodiments described, as such embodiments are necessarily varied. It is also to be understood that the terminology used in the description is for the purpose of describing particular embodiments only, and is not intended to be limiting, since the scope of the present invention will be limited only by the appended claims.
Definition of terms
"isolated binding protein comprising an antibody binding domain", "isolated binding protein", "binding protein" broadly refer to any protein or protein fragment comprising at least one complementarity determining region, including Fab, F (ab') 2, Fd, Fv, scFv, diabodies, minimum recognition units for antibodies, antibodies themselves, and single chain derivatives of these antibodies and fragments. "antibody" broadly refers to any antigenic compound binding fragment or protein that includes an antigenic compound binding fragment, including polyclonal antibodies, monoclonal antibodies. The type of antibody may be selected from IgG1, IgG2, IgG3, IgG4, IgA1, IgA2, IgM, IgD and IgE. Furthermore, the term "antibody" includes naturally occurring antibodies as well as non-naturally occurring antibodies, including, for example, chimeric antibodies, humanized antibodies, and related synthetic isomeric forms. The term "antibody" is used interchangeably with "immunoglobulin".
"monoclonal antibody" refers to an antibody obtained from a substantially homogeneous population in which the individual antibodies contained are identical except for a few naturally occurring mutations that may be present. The modifier "monoclonal" indicates only the identity of the antibody and is obtained from a substantially homogeneous population of antibodies, and is not to be construed as requiring any particular method for producing the antibody.
An "antigen-binding portion" (or simply "antibody portion") refers to one or more fragments of an antibody that retain the ability to specifically bind to an antigen (e.g., PCT). Such "fragments" are, for example, between about 8 and about 1500 amino acids, suitably between about 8 and about 745 amino acids, suitably about 8 to about 300 amino acids, for example about 8 to about 200 amino acids, or about 10 to about 50 or 100 amino acids in length. It has been shown that the antigen binding function of an antibody can be performed by fragments of a full-length antibody.
By "variable region" or "variable domain" of an antibody is meant that certain portions of the variable region of the antibody differ in sequence, which results in the binding and specificity of each particular antibody for its particular antigen. The variable domain of the heavy chain may be referred to as "VH". The variable domain of the light chain may be referred to as "VL". Variability is concentrated in three segments called Complementarity Determining Regions (CDRs) or hypervariable regions in the light and heavy chain variable regions, i.e. the VL or VH consists of framework regions interrupted by three CDR hypervariable regions. The CDRs are primarily responsible for binding to antigen.
"backbone", "framework" or "FR" refers to highly conserved portions of variable domains. The variable domains of the unmodified heavy and light chains each contain 4 contiguous regions separated by CDRs (FR1, FR2, FR3 and FR 4). The FR regions are the more conserved portions of the variable regions, which mainly adopt a β -sheet configuration interspersed with 3 CDRs that form loops and, in some cases, join the β -sheet structural portions. The CDRs in each chain are held close together by the FRs and, together with the CDRs from the other chains, facilitate the formation of the antigen binding site of the antibody.
Typically, the variable domains VL/VH of the heavy and light chains are obtained by linking the CDRs and FRs numbered as follows in a combinatorial arrangement: FR1-CDR1-FR2-CDR2-FR3-CDR3-FR 4.
"conservative variants" refers to variants that substantially retain the characteristics of their parent, such as basic immunological biological, structural, regulatory, or biochemical characteristics. Generally, the amino acid sequence of a conservative variant of a polypeptide differs from the parent polypeptide, but the difference is limited so that the sequence with the parent polypeptide is very similar to the conservative variant overall and is identical in many regions. The difference in amino acid sequence between the conservative variant and the parent polypeptide can be, for example: substitutions, additions, and deletions of one or more amino acid residues and any combination thereof. The amino acid residue that is substituted or inserted may or may not be encoded by the genetic code. A conservative variant of a polypeptide may occur naturally, or it may be a non-naturally occurring variant. Non-naturally occurring conservative variants of the polypeptide may be generated by mutagenesis techniques or by direct synthesis.
"purified" or "isolated" means that the protein, polypeptide, or nucleic acid is not in its natural medium or in its natural form. Thus, the term "isolated" refers to a molecule that is substantially free from its natural environment. For example, an isolated protein is substantially free of cellular material or other proteins from the cell or tissue source from which it is derived. The term "isolated" also refers to a formulation wherein the isolated protein is sufficiently pure to be capable of being administered as a pharmaceutical composition, or at least 70-80% (w/w) pure, more preferably at least 80-90% (w/w) pure, even more preferably 90-95% pure, and most preferably at least 95%, 96%, 97%, 98%, 99% or 100% (w/w) pure. In connection with a nucleic acid, the term isolated or purified indicates, for example, that the nucleic acid is not in its natural genomic context (e.g., in a vector, as an expression cassette, linked to a promoter, or artificially introduced into a heterologous host cell).
"affinity" denotes the equilibrium constant for reversible binding of 2 reagents and is denoted as KD. The affinity of a binding protein for a ligand, such as the affinity of an antibody for an epitope, can be, for example, about 100 nanomolar (nM) to about 0.1nM, about 100nM to about 1 picomolar (pM), or about 100nM to about 1 femtomolar (fM). The term "affinity" as used herein means 2 or more reagentsThe complex of (a) is resistant to dissociation after dilution. Apparent affinity can be determined by methods such as enzyme-linked immunosorbent assay (ELISA) or any other technique familiar to those skilled in the art.
"identity" means that when optimally aligned and compared between two peptides or two nucleic acid molecules, at least about 80% of the nucleotides are identical, typically at least about 90% to 95%, and more preferably at least about 98% to 99.5% of the nucleotides are identical, although appropriate nucleotide insertions or deletions. Alternatively, substantial identity also exists when the fragments hybridize to the complement of the strand under selective hybridization conditions. The percent identity between two sequences is the proportion of sequences in which they are identical in nucleotide or amino acid residue at the same position (i.e.,% identity-the number of identical positions/total number of positions x 100), taking into account the number of gaps that need to be introduced to achieve optimal alignment of the two sequences and the length of each gap. Sequence comparison and determination of percent identity between two sequences can be accomplished using a mathematical algorithm.
Exemplary embodiments of the invention
In some embodiments, the antigen binding domain has at least 80%, 85%, or 90%, or 91%, or 92%, or 93%, or 94%, or 95%, or 96%, or 97%, or 98%, or 99% sequence identity to the complementarity determining region of an amino acid sequence described below.
In some embodiments, the binding protein has a K with PCTDThe value is less than or equal to 8.72 multiplied by 10-10mol/L; or KDThe value is less than or equal to 8 x 10-10mol/L; or KDThe value is less than or equal to 7 x 10-10mol/L; or KDThe value is less than or equal to 6 x 10-10mol/L;KDValue less than or equal to 5X 10-10mol/L; or KD≤4×10-10mol/L, or KDThe value is less than or equal to 3X 10-10mol/L; or KD≤2×10-10mol/L, or KD≤1×10- 10mol/L, or KD≤9×10-11mol/L, or KD≤8×10-11mol/L, or KD≤7×10-11mol/L, or KD≤6×10- 11mol/L, or KD≤5×10-11mol/L, or KD≤4×10-11mol/L, or KD≤3×10-11mol/L, or KD≤2×10- 11mol/L, or KD is less than or equal to 1 x 10-11mol/L; or 1.04X 10-11mol/L≤KD≤8.72×10-10Affinity of mol/L.
In some embodiments, the binding protein is a "functional fragment" of an antibody, which typically has the same specificity as the antibody from which it is derived. As those skilled in the art can surmise from the description of the present invention and the means of the related art, the antibody fragment of the present invention can be obtained by methods such as enzymatic digestion (including pepsin or papain) and/or by chemical reduction cleavage of disulfide bonds.
In some embodiments, the framework region sequence is a human framework sequence, such that a humanized antibody is formed.
In some embodiments, the constant region sequences of the present application include heavy chain constant regions, such as a μ chain, δ chain, γ chain, α chain, or ε chain constant regions of an IgG1, IgG2, IgG3, IgG4, IgA, IgE, IgM, or IgD. Light chain constant regions, kappa light chain constant regions or lambda light chain constant regions may also be included.
The constant regions are not directly involved in the binding of antibodies to antigens, but they exhibit different effector functions, such as participation in antibody-dependent cytotoxicity of antibodies.
Alternatively, in another embodiment, the constant region sequence may be substituted for at least one amino acid residue while maintaining the binding protein activity or affinity.
In some embodiments, the constant region sequences of the present application are human sequences to make up a humanized antibody.
In some embodiments, the nucleic acid sequences described herein are operably linked to an expression control sequence in a suitable expression vector and the expression vector is employed to transform a suitable host cell. "operably linked" means that the coding sequence is linked to the regulatory sequences in a manner that allows for expression of the coding sequence. Regulatory sequences are selected to direct the expression of the protein of interest in a suitable host cell, and include, but are not limited to, promoters, enhancers and other expression control elements.
By "host cell" is meant a cell into which a recombinant expression vector has been introduced. It is understood that such terms refer not only to the particular subject cell, but also to the progeny of such a cell. Because certain modifications may occur in succeeding generations due to either mutation or environmental influences, such progeny may not, in fact, be identical to the parent cell, but are still included within the scope of the term "host cell" as used herein.
In some embodiments, the nucleic acids of the invention or fragments thereof may be inserted into a suitable vector to form a cloning or expression vector carrying the nucleic acid fragments of the invention. Such novel vectors are also part of the present invention. By "vector" is meant a nucleic acid molecule capable of transporting another nucleic acid to which it is linked. One type of vector is a "plasmid," which refers to a circular double-stranded DNA loop into which additional DNA segments can be ligated. Another type of vector is a viral vector, wherein additional DNA segments can be ligated into the viral genome. Certain vectors are capable of autonomous replication in a host cell into which they are introduced (e.g., bacterial vectors having a bacterial origin of replication and episomal mammalian vectors). Other vectors (e.g., non-episomal mammalian vectors) can be integrated into the genome of a host cell upon introduction into the host cell, and thereby are replicated along with the host genome. In addition, certain vectors are capable of directing the expression of genes to which they are operatively linked.
The cloning and expression vectors of the invention are capable of autonomous replication and thus provide high copy numbers for high level expression or high level replication purposes for subsequent cloning. The expression vector may comprise a promoter for driving expression of the nucleic acid fragment of the invention, optionally a nucleic acid sequence encoding a signal peptide for secretion or integration of the peptide expression product into a membrane, a nucleic acid fragment of the invention, and optionally a nucleic acid sequence encoding a terminator. When the expression vector is manipulated in a production strain or cell line, the vector, when introduced into a host cell, may or may not be integrated into the genome of the host cell. Vectors typically carry a replication site, as well as a marker sequence capable of providing phenotypic selection in transformed cells.
In other embodiments, the invention further comprises the step of introducing the vector comprising the nucleic acid into a host cell, which may employ any available technique. For eukaryotic cells, suitable techniques may include, for example, calcium phosphate transfection, DEAE dextran, electroporation, liposome-mediated transfection, and transduction using retroviruses or other viruses (e.g., vaccinia, or for insect cells, baculovirus). For bacterial cells, suitable techniques may include, for example, calcium chloride transformation, electroporation, and transfection using bacteriophages. Preferred host cells of the invention are derived from mammalian cells, such as CHO cells. The transformed cells are capable of replicating the nucleic acid fragments of the invention.
In some embodiments, the indicator that shows signal intensity comprises any one of a fluorescent substance, a quantum dot, a digoxigenin-labeled probe, biotin, a radioisotope, a radiocontrast agent, a paramagnetic ion fluorescent microsphere, an electron-dense substance, a chemiluminescent label, an ultrasound contrast agent, a photosensitizer, colloidal gold, or an enzyme.
Many known nucleic acid manipulation techniques and methods, such as preparation of nucleic acid constructs, mutagenesis, sequencing, introduction of DNA into cells and gene expression, and analysis of proteins, are described in detail in: short Protocols in Molecular Biology, 2 nd edition, eds. Ausubel et al, John Wiley & Sons, 1992.
Embodiments of the present invention will be described in detail below with reference to examples, but it will be understood by those skilled in the art that the following examples are only illustrative of the present invention and should not be construed as limiting the scope of the present invention. The examples, in which specific conditions are not specified, were conducted under conventional conditions or conditions recommended by the manufacturer. The reagents or instruments used are not indicated by the manufacturer, and are all conventional products commercially available.
Example 1
This example provides an exemplary method for the preparation of procalcitonin antibodies.
S1, constructing an expression plasmid:
restriction enzyme, Prime Star DNA polymerase in this example was purchased from Takara;
the MagExtractor-RNA extraction kit was purchased from TOYOBO;
BD SMARTTMRACE cDNA Amplification Kit was purchased from Takara;
pMD-18T vector was purchased from Takara;
the plasmid extraction kit is purchased from Tiangen corporation;
primer synthesis and gene sequencing were done by Invitrogen;
the Anti-PCT monoclonal antibody is secreted as an existing hybridoma cell strain and is recovered for later use.
Design and synthesis of S11 primer:
5' RACE upstream primers for heavy and light chain amplification:
SMARTER II A Oligonucleotide:
5’>AAGCAGTGGTATCAACGCAGAGTACXXXXX<3’;
5'-RACE CDS Primer(5'-CDS):5’>(T)25VN<3’(N=A,C,G,orT;V=A,G,orC);
Universal Primer A Mix(UPM):
5’>CTAATACGACTCACTATAGGGCAAGCAGTGGTATCAACGCAGAGT<3’;
Nested Universal Primer A(NUP):
5’>AAGCAGTGGTATCAACGCAGAGT<3’;
mIgG CKR:5’>TTTTCCTTTTGAATTCCTAACACTCATTCCTGTTGAAGC<3’;
mIgG CHR:5’>TTTTCCTTTTGAATTCTCATTTACCAGGAGAGTGGGAGA<3’。
cloning and sequencing of variable region gene of S12 antibody:
extracting RNA from hybridoma cell strain secreting Anti-PCT monoclonal antibody, and extracting with SMARTERTMRACE cDNA Amplification Kit andSMARTER II A Oligonucleotide and 5' -CDS primer in the kit are used for first strand cDNA synthesis, and the obtained first strand cDNA product is used as PCR amplification template. The Light Chain gene was amplified with Universal Primer A Mix (UPM), Nested Universal Primer A (NUP) and mIgG CKR primers, and the Heavy Chain gene was amplified with Universal Primer A Mix (UPM), Nested Universal Primer A (NUP) and mIgG CHR primers. The primer pair of Light Chain can amplify target band about 0.75KB, and the primer pair of Heavy Chain can amplify target band about 1.4 KB. The product was purified and recovered by agarose gel electrophoresis, and the product was subjected to A addition reaction with rTaq DNA polymerase, inserted into pMD-18T vector, transformed into DH 5. alpha. competent cells, and after colonies were grown, 4 clones of the Heavy Chain and Light Chain genes were cloned, respectively, and sent to Invitrogen corporation for sequencing.
Sequence analysis of the S13Anti-PCT antibody variable region genes:
putting the gene sequence obtained by sequencing in an IMGT antibody database for analysis, and analyzing by using VNTI11.5 software to determine that the genes amplified by the heavy Chain primer pair and the Light Chain primer pair are correct, wherein in the gene fragment amplified by the Light Chain, the VL gene sequence is 336bp, belongs to VkII gene family, and a leader peptide sequence of 57bp is arranged in front of the VL gene sequence; in the gene fragment amplified by the Heavy Chain primer pair, the VH gene sequence is 357bp, belongs to a VH1 gene family, and has a leader peptide sequence of 57bp in front.
Construction of S14 recombinant antibody expression plasmid:
pcDNATM 3.4
Figure BDA0002323615230000131
vector is a constructed recombinant antibody eukaryotic expression vector, and multiple cloning enzyme cutting sites such as HindIII, BamHI, EcoRI and the like are introduced into the expression vector and named as pcDNA3.4A expression vector, and the vector is called as 3.4A expression vector for short in the following; according to the sequencing result of the antibody gene in the pMD-18T, the light chain and heavy chain gene specific primers of the Anti-PCT antibody are designed, two ends of the primers are respectively provided with HindIII and EcoRI enzyme cutting sites and protective bases, and the primers are as follows:
PCT-HF:
5’>CCCAAGCTTGCCACCATGGAATGGAGCTGGGTCTTTC<3’
PCT-HR:
5’>CCCGAATTCTCATTATTTACCAGGAGAGTGGGAGAGGCTCTTCTC<3’
PCT-LF:
5’>CCCAAGCTTGCCACCATGGATTCACAGGCCCAGGTTCTTA<3’
PCT-LR:
5’>CCCGAATTCTCATTAACACTCATTCCTGTTGAAGCTCTTGACAA<3’
a0.74 KB Light Chain gene fragment and a 1.42KB Heavy Chain gene fragment were amplified by PCR amplification. The gene fragments of the Heavy Chain and the Light Chain are subjected to double enzyme digestion by HindIII/EcoRI respectively, the 3.4A vector is subjected to double enzyme digestion by HindIII/EcoRI, the Heavy Chain gene and the Light Chain gene are respectively connected into the 3.4A expression vector after the fragments and the vector are purified and recovered, and recombinant expression plasmids of the Heavy Chain and the Light Chain are respectively obtained.
S2. Stable cell strain screening
Transient transfection of CHO cell with S21 recombinant antibody expression plasmid and determination of expression plasmid activity
Plasmid was diluted to 400ng/ml with ultrapure water and CHO cells were conditioned at 1.43X 107cells/ml are put into a centrifuge tube, 100 mul of plasmid is mixed with 700 mul of cells, the mixture is transferred into an electric rotating cup and is electrically rotated, the sampling counting is carried out on 3 rd, 5 th and 7 th days, and the sampling detection is carried out on 7 th day.
The coating solution diluted the recombinant PCT protein (self-produced, 141220) to the indicated concentration, 100. mu.l per well, overnight at 4 ℃; the next day, washing with the washing solution for 2 times, and patting dry; adding blocking solution (20% BSA + 80% PBS), beating to dry at 37 deg.C for 1 hr, and adding blocking solution (120 μ l per well); adding diluted cell supernatant at 100 μ l/well, 37 deg.C for 30min (partial supernatant for 1 h); washing with washing solution for 5 times, and drying; adding goat anti-mouse IgG-HRP (goat anti-mouse IgG-HRP) with the concentration of 100 mu l per well at 37 ℃ for 30 min; washing with washing solution for 5 times, and drying; adding a developing solution A (50 μ l/hole), adding a developing solution B (50 μ l/hole), and standing for 10 min; adding stop solution into the mixture, wherein the concentration of the stop solution is 50 mu l/hole; OD readings were taken at 450nm (reference 630nm) on the microplate reader. The results show that the OD of the reaction after the cell supernatant is diluted 1000 times is still larger than 1.0, and the OD of the reaction without the cell supernatant is smaller than 0.1, which indicates that the antibodies generated after the plasmid is transiently transformed are all active on the recombinant PCT protein.
Linearization of S22 recombinant antibody expression plasmid
The following reagents were prepared: 50 mul Buffer, 100 mul DNA/tube, 10 mul Puv I enzyme, and sterile water to 500 mul, water bath enzyme digestion overnight at 37 ℃; sequentially extracting with equal volume of phenol/chloroform/isoamyl alcohol (lower layer) 25:24:1 and then chloroform (water phase); precipitating with 0.1 volume (water phase) of 3M sodium acetate and 2 volumes of ethanol on ice, rinsing with 70% ethanol, removing organic solvent, re-melting with appropriate amount of sterilized water after ethanol is completely volatilized, and finally measuring concentration.
S23 recombinant antibody expression plasmid stable transfection, pressurized screening of stable cell strain
Plasmid was diluted to 400ng/ml with ultrapure water and CHO cells were conditioned at 1.43X 107cells/ml are put into a centrifuge tube, 100 mul of plasmid is mixed with 700 mul of cells, and the mixture is transferred into an electric rotating cup and is electrically rotated, and the next day is counted; 25 u mol/L MSX 96 hole pressure culture about 25 days.
Observing the marked clone holes with cells under a microscope, and recording the confluence degree; taking culture supernatant, and sending the culture supernatant to a sample for detection; selecting cell strains with high antibody concentration and relative concentration, transferring the cell strains into 24 holes, and transferring the cell strains into 6 holes after 3 days; after 3 days, the seeds were kept and cultured in batches, and the cell density was adjusted to 0.5X 106cells/ml, 2.2ml, cell density 0.3X 106cell/ml, 2ml for seed preservation; and (4) 7 days, carrying out batch culture supernatant sample sending detection in 6 holes, and selecting cell strains with small antibody concentration and cell diameter to transfer TPP for seed preservation and passage.
S3. recombinant antibody production
S31 cell expanding culture
After the cells are recovered, the cells are cultured in a shaking flask with the specification of 125ml, the inoculation volume is 30ml, the culture medium is 100% Dynamis culture medium, and the cells are placed in a shaking table with the rotation speed of 120r/min, the temperature of 37 ℃ and the carbon dioxide of 8%. Culturing for 72h, inoculating and expanding culture at an inoculation density of 50 ten thousand cells/ml, wherein the expanding culture volume is calculated according to production requirements, and the culture medium is 100% Dynamis culture medium. Then the culture is expanded every 72 h. When the cell amount meets the production requirement, the production is carried out by strictly controlling the inoculation density to be about 50 ten thousand cells/ml.
S32 shake flask production and purification
Shake flask parameters: the rotating speed is 120r/min, the temperature is 37 ℃, and the carbon dioxide is 8 percent. Feeding in a flowing mode: daily feeding was started when the culture was carried out for 72h in a shake flask, 3% of the initial culture volume was fed daily to HyCloneTM Cell BoostTM Feed 7a, and one thousandth of the initial culture volume was fed daily to Feed 7b, up to day 12 (day 12 feeding). Glucose was supplemented with 3g/L on the sixth day. Samples were collected on day 13. Affinity purification was performed using a proteinA affinity column. Mu.g of the purified antibody was subjected to reducing SDS-PAGE, and 4. mu.g of an external control antibody was used as a control, and the electrophoretogram was shown in FIG. 1. Two bands were shown after reducing SDS-PAGE, 1 with 50kD Mr and 28kD Mr (light chain).
Example 2
Antibody affinity analysis and activity identification
The antibody obtained in example 1 was analyzed to have a light chain having a sequence shown in SEQ ID NO. 11 and a heavy chain having a sequence shown in 12. The antibody has certain capacity of combining PCT and better affinity, and in order to further screen an antibody with better affinity, the applicant performs mutation on the light chain CDR and the heavy chain CDR of the antibody.
Upon analysis, the complementarity determining region (WT) of the heavy chain:
CDR-VH1 is G-F (X1) -S-V (X2) -T-S-D-Y-T (X3) -W-H;
CDR-VH2 is Y-V (X1) -D-F-R-G-S-T-N (X2) -Y-N-P-S-L (X3) -K (X4) -S;
CDR-VH3 is A-K (X1) -R-G-S-Y (X2) -D;
complementarity determining region (WT) of light chain:
CDR-VL1 is R-S-S-R (X1) -S-IL (X2) -H-S-N-G-V (X3) -T-Y-I (X4) -F;
CDR-VL2 is Q (X1) -M-T (X2) -N-I (X3) -A-S;
CDR-VL3 is A-N (X1) -N-L (X2) -E-I (X3) -P-W-T;
wherein, X1, X2, X3 and X4 are all the sites to be mutated.
TABLE 1 mutant sites associated with antibody Activity
Figure BDA0002323615230000161
Based on the CDR sequences of WT obtained by the above analysis, the above mutation was performed at the corresponding site in Table 1, and the activity of each antibody after mutation was determined.
Diluting the recombinant PCT protein (self-produced, 141220) to 1 mu g/ml by the coating solution for microplate coating, wherein each well is 100 mu l, and the temperature is 4 ℃ overnight; the next day, washing with the washing solution for 2 times, and patting dry; adding blocking solution (20% BSA + 80% PBS), beating to dry at 37 deg.C for 1 hr, and adding blocking solution (120 μ l per well); adding diluted PCT monoclonal antibody 100 μ l/well, 37 deg.C, 30min (partial supernatant for 1 h); washing with washing solution for 5 times, and drying; adding goat anti-mouse IgG-HRP (goat anti-mouse IgG-HRP) with the concentration of 100 mu l per well at 37 ℃ for 30 min; washing with washing solution for 5 times, and drying; adding a developing solution A (50 μ l/hole), adding a developing solution B (50 μ l/hole), and standing for 10 min; adding stop solution into the mixture, wherein the concentration of the stop solution is 50 mu l/hole; OD readings were taken at 450nm (reference 630nm) on the microplate reader.
TABLE 2 antibody Activity assay data
Figure BDA0002323615230000162
Figure BDA0002323615230000171
From the above table, the antibody activity after mutation is significantly improved, wherein the activity effect of mutation 1 is the best, so that mutation 1 is used as a framework sequence for further mutation and screening, and the affinity thereof is determined, the sites after partial mutation are shown in table 3, and the affinity analysis results of the corresponding binding proteins are shown in table 4.
TABLE 3 mutation sites related to antibody affinity
Figure BDA0002323615230000172
Figure BDA0002323615230000181
Affinity assay
Performing enzyme immunoassay in the same manner as activity identification, and performing four gradients of 0.5. mu.g/ml, 0.25. mu.g/ml, 0.125. mu.g/ml and 0.0625. mu.g/ml; the antibody was diluted in a 2-fold gradient starting at 100ng/ml to 0.195ng/ml loading. And obtaining the OD values corresponding to different antibody concentrations under the conditions of no coating concentration. Under the same coating concentration, the antibody concentration is used as an abscissa and the OD value is used as an ordinate, logarithmic mapping is carried out, and the antibody concentration at 50% of the maximum OD value is calculated according to a fitting equation; substitution into the formula: k ═ n-1)/(2 × (n × Ab '-Ab)) the reciprocal of the affinity constant was calculated, where Ab and Ab' respectively represent the antibody concentration at 50% of maximum OD value at the corresponding coating concentration (Ag, Ag '), and n ═ Ag/Ag'; every two coating concentrations can be combined to calculate a K value, finally, all K values are averaged, and the reciprocal value is calculated to be the affinity constant KD
Table 4 affinity assay data
Figure BDA0002323615230000182
Figure BDA0002323615230000191
Figure BDA0002323615230000201
As can be seen from Table 4, the mutant sequences corresponding to the mutation sites listed in Table 3 all have better affinity.
To verify the above results, the above experiment was repeated using WT as a backbone sequence, and affinity verification of the mutation site was performed, and some results are as follows.
TABLE 5 mutations with WT as backbone
Figure BDA0002323615230000202
Table 6 affinity assay data
Figure BDA0002323615230000203
Figure BDA0002323615230000211
From the analysis of tables 5 and 6, the mutant sequences corresponding to the above mutation sites all have certain affinity.
The applicant makes a paired antibody experiment between the above antibody in table 4 and another internal antibody (an antibody paired with an antibody of the original WT sequence), and verified by a double-antibody sandwich method paired experiment, the specificity of the above antibody can be maintained at an original high level without significant change, which indicates that the above antibody and the WT antibody before mutation recognize the same epitope. But showed higher sensitivity due to the increased activity and affinity of the mutant antibody.
Stability analysis
The antibodies in the above examples are respectively placed in 4 ℃ (refrigerator), -80 ℃ (refrigerator), 37 ℃ (incubator) for 21 days, samples for 7 days, 14 days, 21 days are taken for state observation, and activity detection is carried out on the samples for 21 days, the results show that no obvious protein state change is seen after the antibodies are placed in three conditions for 21 days, and the activity does not show the trend of decreasing with the increase of temperature, which indicates that the antibodies all have excellent stability, and the mutation of the sites has no influence on the stability of the antibodies.
Finally, it should be noted that: the above embodiments are only used to illustrate the technical solution of the present invention, and not to limit the same; while the invention has been described in detail and with reference to the foregoing embodiments, it will be understood by those skilled in the art that: the technical solutions described in the foregoing embodiments may still be modified, or some or all of the technical features may be equivalently replaced; and the modifications or the substitutions do not make the essence of the corresponding technical solutions depart from the scope of the technical solutions of the embodiments of the present invention.
SEQUENCE LISTING
<110> Dongguan City of Pengzhi Biotech Co., Ltd
<120> an isolated binding protein comprising a procalcitonin antigen binding domain
<130> 20191018
<160> 12
<170> PatentIn version 3.5
<210> 1
<211> 23
<212> PRT
<213> Artificial Synthesis
<400> 1
Asp Ile Val Met Thr Gln Ala Ala Phe Ser Asn Pro Val Thr Leu Gly
1 5 10 15
Thr Ser Ala Ser Ile Ser Cys
20
<210> 2
<211> 15
<212> PRT
<213> Artificial Synthesis
<400> 2
Trp Tyr Leu Gln Lys Pro Gly Gln Ser Pro His Leu Leu Ile Tyr
1 5 10 15
<210> 3
<211> 32
<212> PRT
<213> Artificial Synthesis
<400> 3
Gly Val Pro Asp Arg Phe Ser Ser Ser Gly Ser Gly Thr Asp Phe Ala
1 5 10 15
Leu Arg Ile Ser Arg Val Glu Ala Glu Asp Val Gly Val Tyr Tyr Cys
20 25 30
<210> 4
<211> 11
<212> PRT
<213> Artificial Synthesis
<400> 4
Phe Gly Gly Gly Thr Lys Leu Glu Ile Lys Arg
1 5 10
<210> 5
<211> 25
<212> PRT
<213> Artificial Synthesis
<400> 5
Asp Val Gln Leu Gln Glu Ser Gly Pro Asp Leu Val Lys Pro Ser Gln
1 5 10 15
Ser Leu Ser Leu Thr Cys Thr Val Thr
20 25
<210> 6
<211> 14
<212> PRT
<213> Artificial Synthesis
<400> 6
Trp Ile Arg Gln Phe Pro Gly Asn Lys Leu Glu Trp Met Gly
1 5 10
<210> 7
<211> 30
<212> PRT
<213> Artificial Synthesis
<400> 7
Arg Ile Ser Ile Thr Arg Asp Thr Ser Lys Asn Gln Phe Phe Leu Val
1 5 10 15
Leu Asn Ser Val Thr Thr Glu Asp Thr Ala Thr Tyr Phe Cys
20 25 30
<210> 8
<211> 12
<212> PRT
<213> Artificial Synthesis
<400> 8
Tyr Trp Gly Gln Gly Thr Thr Leu Thr Val Ser Ser
1 5 10
<210> 9
<211> 106
<212> PRT
<213> Artificial Synthesis
<400> 9
Ala Asp Ala Ala Pro Thr Val Ser Ile Phe Pro Pro Ser Ser Glu Gln
1 5 10 15
Leu Thr Ser Gly Gly Ala Ser Val Val Cys Phe Leu Asn Asn Phe Tyr
20 25 30
Pro Lys Asp Ile Asn Val Lys Trp Lys Ile Asp Gly Ser Glu Arg Gln
35 40 45
Asn Gly Val Leu Asn Ser Trp Thr Asp Gln Asp Ser Lys Asp Ser Thr
50 55 60
Tyr Ser Met Ser Ser Thr Leu Thr Leu Thr Lys Asp Glu Tyr Glu Arg
65 70 75 80
His Asn Ser Tyr Thr Cys Glu Ala Thr His Lys Thr Ser Thr Ser Pro
85 90 95
Ile Val Lys Ser Phe Asn Arg Asn Glu Cys
100 105
<210> 10
<211> 323
<212> PRT
<213> Artificial Synthesis
<400> 10
Ala Lys Thr Thr Pro Pro Ser Val Tyr Pro Leu Ala Pro Gly Ser Ala
1 5 10 15
Ala Gln Thr Asn Ser Met Val Thr Leu Gly Cys Leu Val Lys Gly Tyr
20 25 30
Phe Pro Glu Pro Val Thr Val Thr Trp Asn Ser Gly Ser Leu Ser Ser
35 40 45
Gly Val His Thr Phe Pro Ala Val Leu Gln Ser Asp Leu Tyr Thr Leu
50 55 60
Ser Ser Ser Val Thr Val Pro Ser Ser Thr Trp Pro Ser Gln Thr Val
65 70 75 80
Thr Cys Asn Val Ala His Pro Ala Ser Ser Thr Lys Val Asp Lys Lys
85 90 95
Ile Val Pro Arg Asp Cys Gly Cys Lys Pro Cys Ile Cys Thr Val Pro
100 105 110
Glu Val Ser Ser Val Phe Ile Phe Pro Pro Lys Pro Lys Asp Val Leu
115 120 125
Thr Ile Thr Leu Thr Pro Lys Val Thr Cys Val Val Val Asp Ile Ser
130 135 140
Lys Asp Asp Pro Glu Val Gln Phe Ser Trp Phe Val Asp Asp Val Glu
145 150 155 160
Val His Thr Ala Gln Thr Lys Pro Arg Glu Glu Gln Phe Asn Ser Thr
165 170 175
Phe Arg Ser Val Ser Glu Leu Pro Ile Met His Gln Asp Trp Leu Asn
180 185 190
Gly Lys Glu Phe Lys Cys Arg Val Asn Ser Ala Ala Phe Pro Ala Pro
195 200 205
Ile Glu Lys Thr Ile Ser Lys Thr Lys Gly Arg Pro Lys Ala Pro Gln
210 215 220
Val Tyr Thr Ile Pro Pro Pro Lys Glu Gln Met Ala Lys Asp Lys Val
225 230 235 240
Ser Leu Thr Cys Met Ile Thr Asp Phe Phe Pro Glu Asp Ile Thr Val
245 250 255
Glu Trp Gln Trp Asn Gly Gln Pro Ala Glu Asn Tyr Lys Asn Thr Gln
260 265 270
Pro Ile Met Asp Thr Asp Gly Ser Tyr Phe Val Tyr Ser Lys Leu Asn
275 280 285
Val Gln Lys Ser Asn Trp Glu Ala Gly Asn Thr Phe Thr Cys Ser Val
290 295 300
Leu His Glu Gly Leu His Asn His His Thr Glu Lys Ser Leu Ser His
305 310 315 320
Ser Pro Gly
<210> 11
<211> 219
<212> PRT
<213> Artificial Synthesis
<400> 11
Asp Ile Val Met Thr Gln Ala Ala Phe Ser Asn Pro Val Thr Leu Gly
1 5 10 15
Thr Ser Ala Ser Ile Ser Cys Arg Ser Ser Arg Ser Ile Leu His Ser
20 25 30
Asn Gly Val Thr Tyr Ile Phe Trp Tyr Leu Gln Lys Pro Gly Gln Ser
35 40 45
Pro His Leu Leu Ile Tyr Gln Met Thr Asn Ile Ala Ser Gly Val Pro
50 55 60
Asp Arg Phe Ser Ser Ser Gly Ser Gly Thr Asp Phe Ala Leu Arg Ile
65 70 75 80
Ser Arg Val Glu Ala Glu Asp Val Gly Val Tyr Tyr Cys Ala Asn Asn
85 90 95
Leu Glu Ile Pro Trp Thr Phe Gly Gly Gly Thr Lys Leu Glu Ile Lys
100 105 110
Arg Ala Asp Ala Ala Pro Thr Val Ser Ile Phe Pro Pro Ser Ser Glu
115 120 125
Gln Leu Thr Ser Gly Gly Ala Ser Val Val Cys Phe Leu Asn Asn Phe
130 135 140
Tyr Pro Lys Asp Ile Asn Val Lys Trp Lys Ile Asp Gly Ser Glu Arg
145 150 155 160
Gln Asn Gly Val Leu Asn Ser Trp Thr Asp Gln Asp Ser Lys Asp Ser
165 170 175
Thr Tyr Ser Met Ser Ser Thr Leu Thr Leu Thr Lys Asp Glu Tyr Glu
180 185 190
Arg His Asn Ser Tyr Thr Cys Glu Ala Thr His Lys Thr Ser Thr Ser
195 200 205
Pro Ile Val Lys Ser Phe Asn Arg Asn Glu Cys
210 215
<210> 12
<211> 438
<212> PRT
<213> Artificial Synthesis
<400> 12
Asp Val Gln Leu Gln Glu Ser Gly Pro Asp Leu Val Lys Pro Ser Gln
1 5 10 15
Ser Leu Ser Leu Thr Cys Thr Val Thr Gly Phe Ser Val Thr Ser Asp
20 25 30
Tyr Thr Trp His Trp Ile Arg Gln Phe Pro Gly Asn Lys Leu Glu Trp
35 40 45
Met Gly Tyr Val Asp Phe Arg Gly Ser Thr Asn Tyr Asn Pro Ser Leu
50 55 60
Lys Ser Arg Ile Ser Ile Thr Arg Asp Thr Ser Lys Asn Gln Phe Phe
65 70 75 80
Leu Val Leu Asn Ser Val Thr Thr Glu Asp Thr Ala Thr Tyr Phe Cys
85 90 95
Ala Lys Arg Gly Ser Tyr Asp Tyr Trp Gly Gln Gly Thr Thr Leu Thr
100 105 110
Val Ser Ser Ala Lys Thr Thr Pro Pro Ser Val Tyr Pro Leu Ala Pro
115 120 125
Gly Ser Ala Ala Gln Thr Asn Ser Met Val Thr Leu Gly Cys Leu Val
130 135 140
Lys Gly Tyr Phe Pro Glu Pro Val Thr Val Thr Trp Asn Ser Gly Ser
145 150 155 160
Leu Ser Ser Gly Val His Thr Phe Pro Ala Val Leu Gln Ser Asp Leu
165 170 175
Tyr Thr Leu Ser Ser Ser Val Thr Val Pro Ser Ser Thr Trp Pro Ser
180 185 190
Gln Thr Val Thr Cys Asn Val Ala His Pro Ala Ser Ser Thr Lys Val
195 200 205
Asp Lys Lys Ile Val Pro Arg Asp Cys Gly Cys Lys Pro Cys Ile Cys
210 215 220
Thr Val Pro Glu Val Ser Ser Val Phe Ile Phe Pro Pro Lys Pro Lys
225 230 235 240
Asp Val Leu Thr Ile Thr Leu Thr Pro Lys Val Thr Cys Val Val Val
245 250 255
Asp Ile Ser Lys Asp Asp Pro Glu Val Gln Phe Ser Trp Phe Val Asp
260 265 270
Asp Val Glu Val His Thr Ala Gln Thr Lys Pro Arg Glu Glu Gln Phe
275 280 285
Asn Ser Thr Phe Arg Ser Val Ser Glu Leu Pro Ile Met His Gln Asp
290 295 300
Trp Leu Asn Gly Lys Glu Phe Lys Cys Arg Val Asn Ser Ala Ala Phe
305 310 315 320
Pro Ala Pro Ile Glu Lys Thr Ile Ser Lys Thr Lys Gly Arg Pro Lys
325 330 335
Ala Pro Gln Val Tyr Thr Ile Pro Pro Pro Lys Glu Gln Met Ala Lys
340 345 350
Asp Lys Val Ser Leu Thr Cys Met Ile Thr Asp Phe Phe Pro Glu Asp
355 360 365
Ile Thr Val Glu Trp Gln Trp Asn Gly Gln Pro Ala Glu Asn Tyr Lys
370 375 380
Asn Thr Gln Pro Ile Met Asp Thr Asp Gly Ser Tyr Phe Val Tyr Ser
385 390 395 400
Lys Leu Asn Val Gln Lys Ser Asn Trp Glu Ala Gly Asn Thr Phe Thr
405 410 415
Cys Ser Val Leu His Glu Gly Leu His Asn His His Thr Glu Lys Ser
420 425 430
Leu Ser His Ser Pro Gly
435

Claims (10)

1. An isolated binding protein comprising a procalcitonin antigen-binding domain, wherein said antigen-binding domain comprises at least one complementarity determining region of an amino acid sequence; or conservative variants obtained by conservative mutation by one or more amino acid addition, deletion, substitution or modification to the following amino acid sequences, said conservative variants having at least 80% sequence identity with the complementarity determining regions of the following amino acid sequences:
CDR-VH1 is G-X1-S-X2-T-S-D-Y-X3-W-H, wherein,
x1 is F, V or L, X2 is L, V or I, X3 is S or T;
the CDR-VH2 is Y-X1-D-F-R-G-S-T-X2-Y-N-P-S-X3-X4-S,
x1 is L, V or I, X2 is D, K or N, X3 is I or L, X4 is K or R;
CDR-VH3 is A-X1-R-G-S-X2-D, wherein,
x1 is K or R, X2 is Y, V or F;
the CDR-VL1 is R-S-S-X1-S-X2-H-S-N-G-X3-T-Y-X4-F, wherein,
x1 is R or K, X2 is IL, II, LL or LI, X3 is L, V or I, X4 is I or L;
the complementarity determining region CDR-VL2 is X1-M-X2-N-X3-A-S, wherein,
x1 is N, Q or H, X2 is T or S, X3 is I, V or L;
the CDR-VL3 is A-X1-N-X2-E-X3-P-W-T, wherein,
x1 is Q or N, X2 is I or L, X3 is L or I;
preferably, the first and second liquid crystal materials are,
in the complementarity determining region CDR-VH1, X3 is S;
in the complementarity determining region CDR-VH2, X4 is R;
in the complementarity determining region CDR-VH3, X1 is R;
in the complementarity determining region CDR-VL1, X1 is K;
in the complementarity determining region CDR-VL2, X2 is S;
in the complementarity determining region CDR-VL3, X1 is Q;
preferably, in the complementarity determining region CDR-VH1, X1 is independently selected from F;
preferably, in the complementarity determining region CDR-VH1, X1 is independently selected from V;
preferably, in the complementarity determining region CDR-VH1, X1 is independently selected from L;
preferably, in the complementarity determining region CDR-VH1, X2 is independently selected from L;
preferably, in the complementarity determining region CDR-VH1, X2 is independently selected from V;
preferably, in the complementarity determining region CDR-VH1, X2 is independently selected from I;
preferably, in the complementarity determining region CDR-VH2, X1 is independently selected from L;
preferably, in the complementarity determining region CDR-VH2, X1 is independently selected from V;
preferably, in the complementarity determining region CDR-VH2, X1 is independently selected from I;
preferably, in the complementarity determining region CDR-VH2, X2 is independently selected from D;
preferably, in the complementarity determining region CDR-VH2, X2 is independently selected from K;
preferably, in the complementarity determining region CDR-VH2, X2 is independently selected from N;
preferably, in the complementarity determining region CDR-VH2, X3 is independently selected from I;
preferably, in the complementarity determining region CDR-VH2, X3 is independently selected from L;
preferably, in the complementarity determining region CDR-VH3, X2 is independently selected from Y;
preferably, in the complementarity determining region CDR-VH3, X2 is independently selected from V;
preferably, in the complementarity determining region CDR-VH3, X2 is independently selected from F;
preferably, in the complementarity determining region CDR-VL1, X2 is independently selected from IL;
preferably, in the complementarity determining region CDR-VL1, X2 is independently selected from II;
preferably, in the complementarity determining region CDR-VL1, X2 is independently selected from LL;
preferably, in the complementarity determining region CDR-VL1, X2 is independently selected from LI;
preferably, in the complementarity determining region CDR-VL1, X3 is independently selected from L;
preferably, in the complementarity determining region CDR-VL1, X3 is independently selected from V;
preferably, in the complementarity determining region CDR-VL1, X3 is independently selected from I;
preferably, in the complementarity determining region CDR-VL1, X4 is independently selected from I;
preferably, in the complementarity determining region CDR-VL1, X4 is independently selected from L;
preferably, in the complementarity determining region CDR-VL2, X1 is independently selected from N;
preferably, in the complementarity determining region CDR-VL2, X1 is independently selected from Q;
preferably, in the complementarity determining region CDR-VL2, X1 is independently selected from H;
preferably, in the complementarity determining region CDR-VL2, X3 is independently selected from I;
preferably, in the complementarity determining region CDR-VL2, X3 is independently selected from V;
preferably, in the complementarity determining region CDR-VL2, X3 is independently selected from L;
preferably, in the complementarity determining region CDR-VL3, X2 is independently selected from I;
preferably, in the complementarity determining region CDR-VL3, X2 is independently selected from L;
preferably, in the complementarity determining region CDR-VL3, X3 is independently selected from L;
preferably, in the complementarity determining region CDR-VL3, X3 is independently selected from I;
preferably, the mutation site of each complementarity determining region is selected from any one of the following sequences:
Figure FDA0002323615220000021
Figure FDA0002323615220000031
Figure FDA0002323615220000041
alternatively to this, the first and second parts may,
in the complementarity determining region CDR-VH1, X3 is T;
in the complementarity determining region CDR-VH2, X4 is K;
in the complementarity determining region CDR-VH3, X1 is K;
in the complementarity determining region CDR-VL1, X1 is R;
in the complementarity determining region CDR-VL2, X2 is T;
in the complementarity determining region CDR-VL3, X1 is N;
and the mutation site of each complementarity determining region is selected from any one of the following sequences:
Figure FDA0002323615220000042
preferably, the binding protein has a K with Procalcitonin (PCT)D≤8.72×10-10Affinity of mol/L.
2. The isolated binding protein comprising an antigen binding domain according to claim 1, wherein at least 3 CDRs are included in the binding protein; alternatively, the binding protein comprises at least 6 CDRs;
preferably, the binding protein is a monoclonal antibody, a nanobody, a F (ab')2One of, Fab', Fab, Fv, scFv, diabody, and antibody minimal recognition unit;
preferably, the binding protein comprises light chain framework regions FR-L1, FR-L2, FR-L3 and FR-L4 which have the sequences shown in SEQ ID NO. 1-4 in sequence, and/or heavy chain framework regions FR-H1, FR-H2, FR-H3 and FR-H4 which have the sequences shown in SEQ ID NO. 5-8 in sequence.
3. The isolated binding protein comprising an antigen binding domain according to claim 1 or 2, wherein the binding protein further comprises an antibody constant region sequence;
preferably, the constant region sequence is selected from the group consisting of constant region sequences of one of IgG1, IgG2, IgG3, IgG4, IgA, IgM, IgE, IgD;
preferably, the species of the constant region is from cattle, horses, cows, pigs, sheep, goats, mice, dogs, cats, rabbits, camels, donkeys, deer, mink, chickens, ducks, geese, turkeys or humans;
preferably, the constant region is of murine origin;
preferably, the first and second liquid crystal materials are,
the light chain constant region sequence is shown as SEQ ID NO. 9;
the heavy chain constant region sequence is shown as SEQ ID NO. 10.
4. An isolated nucleic acid molecule which is DNA or RNA encoding the binding protein of any one of claims 1 to 3.
5. A vector comprising the nucleic acid molecule of claim 4.
6. A host cell comprising the nucleic acid molecule of claim 4 or the vector of claim 5;
preferably, the host cell is a mammalian cell;
more preferably, the host cell is a Chinese Hamster Ovary (CHO) cell, a HeLa cell, a young hamster kidney cell, a mouse myeloma cell.
7. A method of producing the binding protein of any one of claims 1 to 3, comprising the steps of:
culturing the host cell of claim 6 under suitable culture conditions and recovering the produced binding protein from the culture medium or from the cultured host cell.
8. Use of a binding protein according to any one of claims 1 to 3 in the manufacture of a product for the diagnosis of a disease associated with a change in PCT levels.
Preferably, the disease associated with a change in PCT levels is an infectious disease, sepsis, multiple organ failure syndrome (MODS);
preferably, the infectious disease comprises a bacterial infection, a fungal infection or a parasitic infection.
9. A method of detecting PCT in a test sample, comprising:
a) contacting a PCT antigen in the test sample with the binding protein of claim 3 under conditions sufficient for an antibody/antigen binding reaction to occur to form an immune complex;
b) detecting the presence of the immune complex;
preferably, in step a), a second antibody is further included in the immune complex, the second antibody binding to the binding protein;
preferably, in step a), a second antibody is further included in the immune complex, said second antibody binding to the PCT antigen.
10. A reagent or kit comprising a binding protein according to any one of claims 1 to 3;
preferably, the reagent or kit further comprises one or more of a buffer, a stabilizer, a diluent or a carrier.
CN201911307723.5A 2019-12-18 2019-12-18 An isolated binding protein comprising a procalcitonin antigen-binding domain Active CN112979804B (en)

Priority Applications (1)

Application Number Priority Date Filing Date Title
CN201911307723.5A CN112979804B (en) 2019-12-18 2019-12-18 An isolated binding protein comprising a procalcitonin antigen-binding domain

Applications Claiming Priority (1)

Application Number Priority Date Filing Date Title
CN201911307723.5A CN112979804B (en) 2019-12-18 2019-12-18 An isolated binding protein comprising a procalcitonin antigen-binding domain

Publications (2)

Publication Number Publication Date
CN112979804A true CN112979804A (en) 2021-06-18
CN112979804B CN112979804B (en) 2022-11-04

Family

ID=76343797

Family Applications (1)

Application Number Title Priority Date Filing Date
CN201911307723.5A Active CN112979804B (en) 2019-12-18 2019-12-18 An isolated binding protein comprising a procalcitonin antigen-binding domain

Country Status (1)

Country Link
CN (1) CN112979804B (en)

Citations (2)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
CN105801697A (en) * 2015-07-09 2016-07-27 南京诺尔曼生物技术有限公司 Monoclonal antibody of human-derived procalcitonin, and preparation method and application thereof
CN108383907A (en) * 2018-03-21 2018-08-10 北京科卫临床诊断试剂有限公司 Nano antibody for Procalcitonin and its application

Patent Citations (2)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
CN105801697A (en) * 2015-07-09 2016-07-27 南京诺尔曼生物技术有限公司 Monoclonal antibody of human-derived procalcitonin, and preparation method and application thereof
CN108383907A (en) * 2018-03-21 2018-08-10 北京科卫临床诊断试剂有限公司 Nano antibody for Procalcitonin and its application

Also Published As

Publication number Publication date
CN112979804B (en) 2022-11-04

Similar Documents

Publication Publication Date Title
CN112920275B (en) Binding proteins, reagents and kits that specifically bind to sST2
CN112979788B (en) Binding protein specifically binding to HBeAg, and reagent and kit for diagnosing HBV infection
CN115785276A (en) Antibody for resisting Taq DNA polymerase and application thereof
JP7117088B2 (en) Antibody, method for producing same, and method for improving thermal stability of antibody
CN112898430B (en) Binding protein of CA242, application thereof, detection method and kit
CN111018983B (en) Anti-human cardiac troponin I antibody and application thereof
CN115819601A (en) Antibody for resisting Taq DNA polymerase and application thereof
CN112979804B (en) An isolated binding protein comprising a procalcitonin antigen-binding domain
CN112898429B (en) Binding protein for CYFRA21-1, application thereof, tumor diagnostic reagent and kit
CN112745390B (en) Binding protein containing NT-proBNP antigen binding structural domain
CN113004405B (en) Isolated binding protein comprising NT-proBNP antigen binding domain
CN112851818B (en) Binding protein for D-dimer, application thereof and method for detecting D-dimer
CN113603786A (en) Bispecific antibody specifically binding SARS-CoV-2S protein and N protein
CN112940130A (en) Binding protein capable of specifically binding to MPO, use thereof, reagent, kit and method for detecting MPO
CN113121694A (en) Isolated binding proteins having antigen binding domains that bind HPG I, methods of making, and uses thereof
CN112979787A (en) Binding protein for binding HBeAg and application thereof
CN112920272B (en) cTnI-resistant protein and method for detecting cTnI
CN112979798B (en) An isolated binding protein comprising a C-reactive protein antigen binding domain
CN113004404B (en) Binding proteins against PCT and methods for detecting PCT
CN112707964B (en) Recombinant antibody for resisting N-terminal brain natriuretic peptide precursor
CN113004402B (en) Binding protein containing hemoglobin antigen structural domain
CN113121693B (en) Isolated binding proteins having antigen binding domains that bind HPG I, primer compositions, methods of making, and uses
CN111018979B (en) Anti-human cardiac troponin I antibody and application thereof
CN113004411B (en) Binding protein capable of specifically binding to CKMB, application thereof and method for detecting CKMB
CN111018977B (en) Recombinant antibody of anti-human cardiac troponin I

Legal Events

Date Code Title Description
PB01 Publication
PB01 Publication
SE01 Entry into force of request for substantive examination
SE01 Entry into force of request for substantive examination
GR01 Patent grant
GR01 Patent grant