CN112125959A - Peptide for inhibiting EB virus, DNA for coding peptide and application thereof - Google Patents
Peptide for inhibiting EB virus, DNA for coding peptide and application thereof Download PDFInfo
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Abstract
The invention belongs to the field of biological medicine, and particularly relates to a peptide for inhibiting Epstein-Barr virus, DNA for coding the peptide and application of the peptide. By using the peptide of the present invention, replication of Epstein-Barr virus can be effectively inhibited, and thus diseases associated with Epstein-Barr virus can be prevented and/or treated.
Description
Technical Field
The invention belongs to the field of biological medicine, and particularly relates to a peptide for inhibiting Epstein-Barr virus, DNA for coding the peptide and application of the peptide.
Background
Epstein-Barr virus (EBV or EB virus) is a gamma-herpes virus, a double-stranded DNA virus, that is associated with a variety of human malignancies. Statistically, about 95% of the world's population carries the virus. EBV is an oncogenic virus that is closely associated with the development of a variety of specific human tumors, including nasopharyngeal carcinoma, hodgkin's lymphoma, burkitt's lymphoma, and gastric carcinoma. The world cancer report released by the international agency for cancer research (IARC)2008 indicates that EBV causes 1% of global cancers, accounting for 5.6% of all infectious cancers. EBV is listed in the first group of oncogens according to the IARC classification criteria for oncogens. Currently, there is no effective clinical method to prevent or eliminate EBV infection.
Therefore, there is a need in the art to find a solution that can prevent and/or eliminate EBV infection.
Disclosure of Invention
As described above, it is highly desirable to find a solution for preventing and/or eliminating EBV infection, thereby treating and/or preventing EBV infection and EBV-associated human diseases.
Accordingly, in a first aspect, the present invention provides a peptide comprising SEQ ID NO: 1.
In a second aspect, the present invention provides a nucleic acid sequence encoding a peptide of the first aspect of the invention.
In a third aspect, the present invention provides an expression vector comprising the nucleic acid sequence of the second aspect of the invention.
In a fourth aspect, the invention provides the use of a peptide of the first aspect of the invention, a nucleic acid sequence of the second aspect of the invention, or an expression vector of the third aspect of the invention, in the manufacture of a medicament for the treatment of an epstein-barr virus-related disease.
In a fifth aspect, the invention provides a method of inhibiting epstein-barr virus replication, the method comprising administering a peptide of the first aspect of the invention or an expression vector of the third aspect of the invention.
In a sixth aspect, the present invention provides a method of treating an epstein-barr virus related disease comprising administering to a patient a peptide of the first aspect of the invention or an expression vector of the third aspect of the invention.
In a seventh aspect, the invention provides a kit comprising a peptide of the first aspect of the invention, a nucleic acid sequence of the second aspect of the invention, or an expression vector of the third aspect of the invention.
The invention has the beneficial effects that:
the peptides of the invention can effectively reduce the copy number of the viral genome, so that designing small molecule inhibitors based on the peptides can potentially alleviate and treat Epstein-Barr virus infection or Epstein-Barr virus-related human diseases.
Drawings
In order to more clearly illustrate the embodiments of the present invention or the technical solutions in the prior art, the drawings will be briefly described below. It is to be understood that the drawings in the following description are directed to only some embodiments of the invention.
FIG. 1 shows details of the BBRF2 Δ -BSRF1 Δ interface, where: panel a schematically shows a comparison of identifiable residues (colored regions) of BBRF2 Δ (green) and BSRF1 Δ (blue) in the BBRF2 Δ -BSRF1 Δ crystal complex with full-length BBRF2 and BSRF 1; panel b shows two views of heterodimers, color labeled with the N-and C-terminal ends of BSRF1 Δ of panel a; panel c shows the hydrophobic interaction between two antiparallel alpha helices of BSRF1 Δ; FIGS. d-f show the hydrophobic interface (d), the polar interface (e), and the BSRF 1. delta. N-terminal loop mediated interface (f) at the BBRF 2. delta. -BSRF 1. delta. interface, respectively, with secondary structural elements labeled, and the amino acid residues involved colored to the color of the molecule to which they belong; panel g shows the surface conservation map for BBRF2 Δ (left) and BSRF1 Δ (right): for clarity, the combined BSRF1 Δ (left) and BBRF2 Δ (right) are shown as transparent, delineating the interface profile of the BBRF2 Δ -BSRF1 Δ heterodimer in yellow.
Fig. 2 shows BSRF1 Δ derived peptides and their binding to BBRF2 Δ, wherein: FIG. a shows a schematic representation of the amino acid lengths of five BSRF1 Δ derived peptides (P1-P5), where N represents the N-loop region in the solved structure; panel b shows binding to 10. mu.g ml-1His6BLI analysis of five peptides of BBRF 2. delta. Only P1 was shown to be able to interact with His6-BBRF2 Δ binding; panel c shows the binding affinity of peptide 1(P1) and BBRF2 Δ as measured by BLI: different concentrations of P1 were mixed with 10. mu.g ml-1His-tagged BBRF2 Δ binding; panel d shows that P1 competes with BSRF1 Δ for binding to BBRF2 Δ: 200nM BBRF 2. delta. was mixed with different concentrations of P1 and 10. mu.g ml-1Fixed BSRF1 Δ binding; panel e shows TAT-P1 reduces EBV genome copy number in a concentration-dependent manner, with error bars representing s.d. (n-3).
Detailed Description
The present invention will now be described more fully hereinafter. It is to be understood that the described embodiments are merely a subset of the present invention and not all embodiments. All other embodiments are available to the person skilled in the art based on the embodiments of the invention and are within the scope of protection of the invention.
The interaction between BBRF2 and BSRF1 (or homologs thereof) is considered critical for the life cycle of epstein-barr virus, while targeting the BBRF2 and BSRF1 junction surfaces is likely to be a potential clinical treatment strategy for EBV. Based on the structure of the BBRF2 Δ -BSRF1 Δ junction plane, the inventors designed 5 BSRF 1-derived peptides (P1-P5) as shown in FIG. 2a, covering the site of BBRF2 binding at the N-loop, α A, or α B of BSRF 1.
Accordingly, in a first aspect, the present invention provides a peptide comprising SEQ ID NO: 1.
As will be appreciated by those skilled in the art, the target peptide may be linked to other peptides having a particular function to achieve the corresponding function. For example, a target peptide may be linked to a cell-penetrating peptide, thereby allowing the target peptide to readily penetrate the cell membrane into the cell.
Thus, in one embodiment, the peptide further comprises a cell penetrating peptide such as a TAT sequence and a linker peptide.
In a second aspect, the present invention provides a nucleic acid sequence encoding a peptide of the first aspect of the invention.
The nucleotide sequence encoding the peptide will be known to those skilled in the art given the amino acid sequence of the peptide.
In one embodiment, the nucleic acid sequence is SEQ ID NO:2, or a pharmaceutically acceptable salt thereof.
The sequence of SEQ ID NO 2 is shown below:
GATCTGGGCCTGCCCCCTGGTGTGCAGGTGGGAGATTTGCTAAGAAATGAGCAGACGATGGGCTCACTGAGACAGGTTTATTTGCTCGCTGTTCAAGCCAATAGCATCACGGAT。
it will be appreciated that the nucleotide sequence shown in SEQ ID NO. 2 may encode a peptide of the invention, but that degenerate sequences thereof may also encode a peptide of the invention.
In a third aspect, the present invention provides an expression vector comprising the nucleic acid sequence of the second aspect of the invention.
In this context, the term "expression vector" refers to a vector in which an expression element (e.g., promoter, RBS, terminator, etc.) is added to the basic backbone of a cloning vector so that a desired gene can be expressed. The expression vector may be a plasmid vector, a phage vector, a viral vector, etc., and is not particularly limited as long as it can express the target protein.
In a fourth aspect, the invention provides the use of a peptide of the first aspect of the invention, a nucleic acid sequence of the second aspect of the invention, or an expression vector of the third aspect of the invention, in the manufacture of a medicament for the treatment of an epstein-barr virus-related disease.
In one embodiment, the Epstein-Barr virus-associated disease is selected from the group consisting of infectious mononucleosis, linked lymphoproliferative syndrome, viral hemophilus syndrome, oral mucoleukoplakia mucosae, viral meningitis, peripheral neuritis, viral pneumonia viral myocarditis, nasopharyngeal carcinoma, Hodgkin's lymphoma, Burkitt's lymphoma, gastric carcinoma, hepatocellular carcinoma, lymphoepithelioid sarcoma, salivary gland tumor, breast cancer, thymoma, primary effusion lymphoma, or B/T/NK cell lymphoma.
In a fifth aspect, the invention provides a method of inhibiting epstein-barr virus replication, the method comprising administering a peptide of the first aspect of the invention or an expression vector of the third aspect of the invention.
It is understood that the "inhibition of epstein-barr virus replication" described herein may be performed for various purposes, such as for therapeutic purposes, such as for research purposes, or for some commercial purpose.
In a sixth aspect, the present invention provides a method of treating an epstein-barr virus related disease comprising administering to a patient a peptide of the first aspect of the invention or an expression vector of the third aspect of the invention.
In one embodiment, the Epstein-Barr virus-associated disease is selected from the group consisting of infectious mononucleosis, linked lymphoproliferative syndrome, viral hemophilus syndrome, oral mucoleukoplakia mucosae, viral meningitis, peripheral neuritis, viral pneumonia viral myocarditis, nasopharyngeal carcinoma, Hodgkin's lymphoma, Burkitt's lymphoma, gastric carcinoma, hepatocellular carcinoma, lymphoepithelioid sarcoma, salivary gland tumor, breast cancer, thymoma, primary effusion lymphoma, or B/T/NK cell lymphoma.
In a seventh aspect, the invention provides a kit comprising a peptide of the first aspect of the invention, a nucleic acid sequence of the second aspect of the invention, or an expression vector of the third aspect of the invention.
The invention has the beneficial effects that:
the peptides of the invention can effectively reduce the viral genome copy number and thus can alleviate and treat epstein-barr virus infection and epstein-barr virus-related human diseases.
The following examples are provided for a better understanding of the present invention. The test methods in the following examples are conventional methods unless otherwise specified. The test materials used in the following examples were purchased from a conventional reagent store unless otherwise specified. It should be noted that the summary above and the detailed description below are merely intended to specifically illustrate the present invention and are not intended to limit the invention in any way. The scope of the invention is to be determined by the appended claims without departing from the spirit and scope of the invention.
Unless defined otherwise, all technical and scientific terms used herein have the same meaning as commonly understood by one of ordinary skill in the art to which this invention belongs. The terminology used in the description of the invention herein is for the purpose of describing particular embodiments only and is not intended to be limiting of the invention.
Examples
The first, experimental part:
protein expression and purification
The cDNAs of BBRF2 and BSRF1 were amplified from the genome of the M81 strain of human herpesvirus 4. The full-length BBRF2 and BBRF217-278The cDNA of (BBRF 2. delta.) was cloned into the engineered pET28 vector (pSKB) and a fusion protein with a 6 XHis-tag followed by a PreScission cleavage site at the N-terminus was expressed in E.coli Rosetta (DE3) cells. The transformed bacteria were cultured in Terrific Broth (TB) medium at 37 ℃ and induced with the addition of 100. mu.M isopropyl-1-thio-. beta. -D-thiogalactoside (IPTG) at an optical density of 0.6. After induction, cells were grown overnight (about 16-18 hours) at 18 ℃ and harvested by centrifugation.
The collected cells were lysed in ice-cold buffer (containing 20mM HEPES (pH7.0), 600mM NaCl, 10% glycerol, 30mM imidazole, 1. mu.M DNase I, 1mM phenylmethanesulfonyl fluoride (PMSF) and 2 mM. beta. -mercaptoethanol (. beta. -ME) using a cell disruptor (JNBIO) and centrifuged at 40,000g for 1 hour at 4 ℃, the supernatant was filtered and loaded onto the bound bufferWash A (containing 20mM HEPES (pH7.0), 600mM NaCl, 10% glycerol, 30mM imidazole, 2 mM. beta. -ME) after equilibration on a Ni-NTA (first Ni-NTA) column (GE Healthcare). After washing with binding buffer A, the proteins were eluted with elution buffer containing 20mM HEPES (pH7.0), 600mM NaCl, 10% glycerol, 300mM imidazole and 2mM β -ME. The eluted protein was incubated with 20. mu.g glutathione S-transferase (GST) -fused PreScission protease (PSP) to remove His6Tag and dialyzed overnight at 4 ℃ against binding buffer B containing 20mM HEPES (pH7.0), 600mM NaCl, 10% glycerol, 2mM β -ME. After dialysis, PSP was removed using a GST column. The protein was re-loaded onto a second Ni-NTA column equilibrated with binding buffer B and eluted with binding buffer a. Subsequently, the eluted proteins were applied to Size Exclusion Chromatography (SEC) using a HiLoad 16/60Superdex 75 column (GE Healthcare) equilibrated with buffer C (containing 20mM HEPES (pH7.0), 600mM NaCl, 10% glycerol and 1mM Dithiothreitol (DTT)). The protein was eluted with discrete peaks (discrete peak) and collected. BBRF217-278The selenomethionine (SeMet) derivative of (A) was expressed as described previously and purified as the native BBRF2 protein.
BSRF134-159(BBRF 1. delta.) cDNA was cloned into pGEX-6p-1 vector. The recombinant protein was expressed and collected in lysis buffer containing 50mM HEPES (pH7.0), 150mM NaCl, 1mM PMSF and 2mM β -ME as was BBRF2 protein. The collected proteins were loaded onto a GST column equilibrated with a binding buffer containing 20mM HEPES (pH7.0), 150mM NaCl and 2mM β -ME and eluted with a buffer containing 20mM HEPES (pH7.0), 150mM NaCl, 10mM glutathione and 2mM β -ME. After treatment with 20 μ g PSP, the protein was loaded onto a GST column to remove the GST tag and PSP. SEC was performed according to the same method as BBRF2 protein. BBRF2 was prepared by mixing purified BBRF2 Δ and BSRF1 Δ at a molar ratio of 1:1 and incubating overnight at 4 ℃17-278-BSRF134-159(BBRF 2. delta. -BSRF 1. delta.) the complex was then purified by SEC using a HiLoad 16/60Superdex 200 column (GE) in buffer C. BSRF120-218The cDNA of (3) was cloned into pSKB vector. Recombinant eggs were expressed, collected and purified as in the BBRF2 constructionWhite, wherein all buffers contained less NaCl (300mM) and no glycerol.
And (3) crystallization:
using hanging drop vapor diffusion, by equal volume of protein (about 7 mg.ml)-1) And the mixture of stock solutions were subjected to crystallization experiments. Crystals of SeMet BBRF 2. delta. were grown from 0.09M NPS (0.03M NaNO) at 4 deg.C3、0.03M Na2HPO4、0.03M(NH4)2SO4) 0.1M 2- (N-morphine) ethanesulfonic acid (MES)/imidazole (pH 6.5), 12.5% PEG1000, 12.5% PEG 3350, and 12.5% MPD. Crystals of the BBRF2 Δ -BSRF1 Δ complex were grown from 0.1M magnesium acetate, 0.05M MES (pH 5.6), and 20% MPD after 1:1000M/M α -chymotrypsin treatment overnight at 4 ℃. The crystals were snap frozen directly in liquid nitrogen.
Structure analysis:
the X-ray diffraction data set for BBRF2 Δ was collected at beam lines BL17U1 and BL19U1 of the shanghai synchrotron radiation apparatus (SSRF). A data set of BBRF2 Δ -BSRF1 Δ complex is collected at the SSRF beam line BL18U 1. The data set is processed using an XDS program suite. The initial phase of the BBRF2 Δ structure was obtained by a single wavelength anomalous dispersion (SAD) method and corrected from the diffraction data set of SeMet substituted BBRF2 Δ crystals using phenix. The BBRF2 Δ -BSRF1 Δ complex structure was resolved by molecular replacement using the structure of BBRF2 Δ as a search model by Phaser. The model for BSRF1 Δ was constructed manually using COOT. The AutoBuild program in the Phenix group was used to minimize model bias. Structure verification was performed using MolProbity. Using a PyMOL molecular graphics system (version 0.99,http: // www.pymol.org /) and CCP4mg generate the block diagrams. X-ray data collection and optimization statistics are listed in table 1.
Table 1: crystallography data acquisition and correction
The numbers in parentheses are the numbers from the highest resolution layer.
Cell culture
CNE2-EBV cells were donated by professor Zengzhi (college of Chinese medical sciences). Cells were cultured in RPMI 1640 medium (GIBCO) containing 10% FBS and penicillin/streptomycin. The cell line is mycoplasma free. CNE2-EBV cells were derived from a mother cell line that had been infected with recombinant EBV.
Biomembrane interference technique (BLI)
The BLI detection was performed using an eight-channel OctetRED biofilm interferometer system (Forte Bio). To determine the interaction between BBRF2 Δ and BSRF1 Δ or peptides P1-P5, His was attached6BBRF2 Δ (10 μ g ml) of the tag-1) Immobilized on the tip of an NTA biosensor (Forte Bio), which has been equilibrated beforehand with a reaction buffer containing 20mM HEPES (pH7.0)), 600mM NaCl, 10% glycerol and 1mM DTT. BSRF1 delta or peptide P1-P5 was diluted to 4-8 different concentrations and purified by conjugation with His6BBRF2 Δ coated tips of the tag were analyzed in turn at each concentration.
To monitor the competitive binding of BSRF1 Δ and P1 peptides to BBRF2 Δ, BSRF1 Δ was biotinylated using Biotinylation Kit (Genemore) at room temperature for 30 minutes, and then BSRF1 Δ was immobilized onto streptavidin-coated (SA) biosensor tips pre-equilibrated in reaction buffer. The P1 peptide was diluted to different concentrations (100. mu.M, 50. mu.M, 25. mu.M, 12.5. mu.M, 6.3. mu.M and 3.1. mu.M) in reaction buffer and mixed with 200nM of BBRF 2. delta. respectively. All experiments were performed at 25 ℃. Each measurement involved a 120s baseline (using reaction buffer), followed by a 180s (using protein) or (using peptide) binding phase, and a 180s dissociation phase (using reaction buffer). The raw Data was processed using Octet Data Analysis software 11.0 supplied by Fortebio to derive the dissociation constant (K)D). Results were plotted using Origin (2019 version, Origin lab).
Synthesis of peptides
Sangon Bio (Shanghai, China) was entrusted with the synthesis of the following peptides. The amino acid sequence of the peptide is shown in table 2 below:
TABLE 2 amino acid sequence of the peptides
Peptide transfection assay
The TAT-peptide was dissolved in RPMI 1640 medium. Peptides were added at different concentrations to 12-well plates pre-seeded with CNE2-EBV cells (human nasopharyngeal carcinoma cells with persistent EBV infection) and incubated at 37 ℃ for 2 hours. The cells were subsequently washed 3 times with PBS and then transferred to RPMI 1640 supplemented with 10% Fetal Bovine Serum (FBS), penicillin/streptomycin, sodium butyrate and phorbol 12-myristate 13-acetate (PMA). After 48 hours, the EBV genomic copy number of these cells was determined.
EBV Gene copy number assay
CNE2-EBV cells pre-transfected with TAT-peptide were treated with 2.5mM sodium butyrate and 20ng ml-1Phorbol 12-myristate 13-acetate (PMA) was treated for 12 hours to induce EB virion production. After 48 hours, cells were harvested and washed 3 times with PBS for measurement of virus replication, and then the remaining medium was filtered through a 0.45 μm filter and centrifuged at 1,000g for 10 minutes at 4 ℃ to remove cell debris. Copy number of the enveloped virus genomic DNA was determined by qPCR analysis of virus supernatants. Briefly, (QIAGEN) the enveloped viral genomic DNA is extracted from the induced cells. The supernatant was washed with DNase I (105U ml)-1) Digested at 37 ℃ for 1 hour, then mixed with lysis buffer and 0.1mg ml-1And mixing the protease K. Protease K was added to remove the viral envelope and capsid. The mixture was heated at 56 ℃ for 10 minutes and then at 75 ℃ for 20 minutes to inactivate the enzyme. The samples were diluted 1:10 with RNase free water and then qPCR was performed using primers for BALF5 DNA polymerase gene. The EBV-encoded gene was quantified by qPCR using gene-specific primers (table 3).
TABLE 3 primer List for qPCR
II, results and discussion:
based on the structural details of the validated BBRF2 Δ -BSRF1 Δ binding interface, the present inventors designed 5 BSRF 1-derived peptides (P1-P5) that cover the binding site of BBRF2 at the N-loop, α a or α B of BSRF1 (fig. 2 a). BLI analysis showed that only the longest P1 (covering the N loop and a) showed significant binding to BBRF2 Δ, KDAt 7.4. mu.M (FIG. 2c, FIG. 2 b). This means that a single structural element of BSRF1 is insufficient to form a stable bond between BSRF1 Δ and BBRF 2. The inventors then tested whether P1 could compete with wild-type BSRF1 Δ in the BBRF2 Δ -BSRF1 Δ complex. As shown by BLI analysis, addition of P1 disrupted the binding between BBRF2 Δ and immobilized BSRF1 Δ in a concentration-dependent manner (fig. 2d), indicating that P1 could compete with BSRF1 in binding to BBRF2 Δ. In view of this result, the present inventors investigated the potential cellular effects of P1 in CNE2-EBV cells, a human nasopharyngeal carcinoma cell with persistent EBV infection. To facilitate cellular uptake of P1, the inventors fused the TAT sequence and a tetraglycine linker to the N-terminus of P1 (TAT-P1). TAT-P1 reduces viral genome copy number in a concentration-dependent manner when transfected into CNE2-EBV cells. At a concentration of 5. mu.M, TAT-P1 was able to reduce EBV genome copy number by 75%, but this effect was not further enhanced at higher concentrations of TAT-P1 (FIG. 2 e). These results indicate that disrupting the BBRF2-BSRF1 interaction may be an effective method to control EBV production.
In the previous studies of the inventors, complex structures of EBV interlayer proteins BBRF2 and BSRF1 were reported, revealing a conserved pattern between EBV interlayer proteins. Based on biochemical and cellular experimental results and previous researches on BBRF2/BSRF1 homologues in other herpesviruses, the BBRF2-BSRF1 complex plays an important role in EBV assembly and has important significance on secondary envelope. The BBRF2-BSRF1 complex can create a permissive confinement environment that favors the EBV secondary envelope. On the other hand, the knockdown of BBRF2 or BSRF1 has been reported to reduce the viral genome copy number in EBV-infected cells, and the BBRF2-BSRF1 complex may carry out different key processes in EBV maturation and efflux. Finally, the unique folding of BBRF2 makes it a potential specific drug target against EBV. Given that the P1 peptide had inhibitory effect on EBV genome copy number at low molar levels (fig. 2e), targeting the BBRF2-BSRF1 complex by optimized BSRF1 derived peptides is expected to be a new strategy for treating EBV infection and EBV-related human diseases.
Sequence listing
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Claims (9)
1. A peptide comprising SEQ ID NO: 1.
2. The peptide of claim 1, wherein the peptide further comprises a cell penetrating peptide such as a TAT sequence and a linker peptide.
3. A nucleic acid sequence encoding the peptide of any one of claims 1-2.
4. The nucleic acid sequence of claim 3, wherein the nucleic acid sequence is SEQ ID NO:2, or a pharmaceutically acceptable salt thereof.
5. An expression vector comprising the nucleic acid sequence of claim 3 or 4.
6. Use of a peptide according to any one of claims 1 to 2, a nucleic acid sequence according to claim 3 or 4, or an expression vector according to claim 5 in the manufacture of a medicament for the treatment of an epstein-barr virus related disease.
7. The use of claim 6, wherein the Epstein-Barr virus-associated disease is selected from infectious mononucleosis, Linked lymphoproliferative syndrome, viral hemophilt syndrome, oral mucoleukoplakia mucosae, viral meningitis, peripheral neuritis, viral pneumonia viral myocarditis, nasopharyngeal carcinoma, Hodgkin's lymphoma, Burkitt's lymphoma, gastric cancer, hepatocellular carcinoma, lymphoepithelioid sarcoma, salivary gland tumor, breast cancer, thymoma, primary effusion lymphoma or B/T/NK cell lymphoma.
8. A method of inhibiting epstein-barr virus replication comprising administering a peptide of any of claims 1-2 or an expression vector of claim 5.
9. A kit comprising the peptide of any one of claims 1-2, the nucleic acid sequence of claim 3 or 4, or the expression vector of claim 5.
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