CN111424079A - Health aging diagnosis circRNA marker and application - Google Patents

Health aging diagnosis circRNA marker and application Download PDF

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CN111424079A
CN111424079A CN202010247925.1A CN202010247925A CN111424079A CN 111424079 A CN111424079 A CN 111424079A CN 202010247925 A CN202010247925 A CN 202010247925A CN 111424079 A CN111424079 A CN 111424079A
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孔庆鹏
葛明侠
李功华
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Kunming Institute of Zoology of CAS
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Abstract

The invention discloses a healthy aging diagnosis circRNA marker and application thereof, wherein the healthy aging diagnosis circRNA marker comprises 22 circRNAs, nucleotide sequences of the circRNAs are shown as SEQ ID NO.1-22, the circRNA markers have the characteristics of high accuracy and high sensitivity, and the area AUC under a prediction line reaches 0.914, so that the healthy aging diagnosis circRNA marker is prompted to have higher accuracy and sensitivity, and can be directly used as an index of healthy old people.

Description

Health aging diagnosis circRNA marker and application
Technical Field
The invention belongs to the technical field of biomedicine, and particularly relates to a healthy aging diagnosis circRNA marker and application thereof.
Background
Chinese walk into the aging society of the population is a visible trend, and the derived support problems and high medical care cost of the senile diseases are a disproportionate burden for individuals and countries. The social circles have also started active discussion and response to the problems caused by aging of the population, and research on the prevention and treatment of senile diseases and healthy aging is an important task. The health aging characteristics of the aged population are evaluated by exploring the health aging markers, and the method is an essential part in the scientific research of health aging.
At present, in the research on health aging and longevity, the mainstream research thought in the world is to search for longevity-related genetic variation starting from genome, but the information obtained by genetic research to date is very limited. Based on the existing research, the transcriptome information and epigenetic factors have important regulation and control functions on the healthy aging process. Therefore, the search of markers capable of indicating healthy aging characteristics from the perspective of transcriptomics has an important propulsion role for the whole healthy aging research work. The circRNA is a special RNA molecule with a closed ring structure in transcriptome information, and due to the special structure, the circRNA has strong stability and specificity and is an excellent choice as a molecular diagnostic marker. Notably, various studies have found that circRNA plays an important regulatory role in some senile diseases, such as alzheimer's disease, parkinson's disease, atherosclerosis, tumors, etc., and therefore, there is a need to develop new healthy aging markers based on circRNA.
Disclosure of Invention
In view of the above, the present invention provides a healthy aging diagnosis circRNA marker and applications thereof.
In order to solve the above technical problems, the present invention discloses a healthy aging diagnosis circRNA marker, which comprises one or more of hsa _ circ _0005838, hsa _ circ _0001788, hsa _ circ _0007883, hsa _ circ _0000396, hsa _ circ _0069399, hsa _ circ _0024193, hsa _ circ _0132409, hsa _ circ _0001392, hsa _ circ _0007132, hsa _ circ _0006037, hsa _ circ _0001317, hsa _ circ _0000267, hsa _ circ _0000497, hsa _ circ _0067716, hsa _ circ _0000311, hsa _ circ _0008234 a _ circ _ cihs _0001386, hsa _ circ _0000330, hsa _ circ _0001346, hsa _ circ _ 5 _0003496, and hsa _ circ _ 0000259.
Alternatively, the nucleotide sequence of the healthy aging diagnostic circRNA marker is shown in SEQ ID NO. 1-22.
The invention also discloses application of the healthy aging diagnosis circRNA marker in preparing a healthy aging early diagnosis product, wherein the diagnosis product comprises a reagent for detecting the one or more markers, and the reagent is used for judging whether the subject has the possibility of healthy aging by detecting the expression value of the one or more markers in the body of the subject.
Optionally, in particular detecting the expression value of one or more markers in the blood of the subject.
Optionally, the expression of the markers hsa _ circ _0005838, hsa _ circ _0007883, hsa _ circ _0069399, hsa _ circ _0001392, hsa _ circ _0007132, hsa _ circ _0000267, hsa _ circ _0000311, hsa _ circ _0001386, hsa _ circ _0000330 is significantly increased in healthy elderly.
Optionally, the markers hsa _ circ _0001788, hsa _ circ _0000396, hsa _ circ _0024193, hsa _ circ _0132409, hsa _ circ _0006037, hsa _ circ _0001317, hsa _ circ _0000497, hsa _ circ _0067716, hsa _ circ _0008234, hsa _ circ _0001346, hsa _ circ _0006965, hsa _ circ _0000259, and hsa _ circ _0003496 are significantly reduced in expression in the healthy elderly.
Optionally, the diagnostic product is a kit, chip or assay platform.
The invention also discloses an application of the healthy aging diagnosis circRNA marker in healthy aging diagnosis.
Optionally, the method comprises the following steps:
step 1, taking fresh anticoagulated blood of an old aged over 65 years old, and extracting total RNA of leucocytes;
step 2, removing rRNA from the obtained RNA sample, preparing the sample according to an Illumina RNA-seq library preparation manual, and performing sequencing on an Illumina Hiseq-2500 platform after the preparation is finished and the quality detection is qualified; identifying and quantifying circRNA according to the sequencing data by using a procedure of CIRCCexplor software, and finally obtaining expression data of all circRNA;
and 3, extracting expression value data of the 22 circRNA markers from the circRNA expression data, introducing the expression value data into a healthy aging diagnosis model, and analyzing the obtained score numerical value, wherein if the numerical value is more than 0.5 and is closer to 1, the characteristic tendency of healthy aging of the testee is higher, and conversely, the characteristic tendency of healthy aging is lower as the numerical value is closer to 0.
Alternatively, the healthy aging diagnostic model is: score is the sum of the coefficients for each circRNA marker plus 0.162271651 for the sample expression values.
Compared with the prior art, the invention can obtain the following technical effects:
the novel blood health aging diagnosis circRNA marker multiple linear regression model provided by the invention has the characteristics of high accuracy and high sensitivity, the area AUC under the prediction line reaches 0.914, and the prediction line has higher accuracy and sensitivity, so that the model can be directly used as an index of health aging.
Of course, it is not necessary for any one product in which the invention is practiced to achieve all of the above-described technical effects simultaneously.
Drawings
The accompanying drawings, which are included to provide a further understanding of the invention and are incorporated in and constitute a part of this specification, illustrate embodiments of the invention and together with the description serve to explain the invention and not to limit the invention. In the drawings:
FIG. 1 is a ROC curve of a healthy aging diagnostic model based on 22 circRNA markers according to the present invention;
FIG. 2 is the model accuracy judgment of healthy aging diagnosis based on 22 circRNA markers in the present invention.
Detailed Description
The following embodiments are described in detail with reference to the accompanying drawings, so that how to implement the technical features of the present invention to solve the technical problems and achieve the technical effects can be fully understood and implemented.
The invention further analyzes and compares the circRNA expression profiles of the centenarian and normal control population based on transcriptome data of China's family of centenarian, and searches for a key circRNA molecular marker capable of representing healthy aging.
Among them, the world health organization defines healthy aging as: in the elderly stage, the process of maintaining a series of functional abilities (including self-satisfying self-needs; learning and making decisions; acting, establishing and maintaining interpersonal relationships; contributing to society) to make self-life valuable (https:// www.who.int/serving/health-serving/en /)
To achieve healthy aging, it is essential that senile diseases (aged disease [ M ]. scientific press, 2011, 1/1) and serious diseases (defined in "standard for defining disease for insurance of serious diseases" started from 4/3/2007) be avoided during aging, and that the elderly stage is passed with little morbidity and extremely low hospitalization rate.
Example 1 healthy aging diagnosis circRNA marker
The invention discloses a healthy aging diagnosis circRNA marker, which can be used for carrying out healthy early diagnosis by single or combination of two or more than two, and comprises one or more of hsa _ circ _0005838, hsa _ circ _0001788, hsa _ circ _0007883, hsa _ circ _0000396hsa _ circ _0069399, hsa _ circ _0024193, hsa _ circ _0132409, hsa _ circ _0001392, hsa _ circ _0007132, hsa _ circ _0006037, hsa _ circ _0001317, hsa _ circ _0000267, hsa _ circ _0000497, hsa _ circ _0067716, hsa _ circ _0000311, hsa _ circ _0008234 _ circ _0001386, hsa _ circ _0000330, hsa _ circ _0001346, hsa _ circ _0003496 and hsa _ 0000259.
Through the analysis of the whole transcriptome data of 71 centuries (the age range is 93-111 years, the average age is 98.3 years) and 115 control groups (the age range is 23-86 years, the average age is 54.4 years) such as 21 healthy elderly people with long lives and 29 common people in Hainan Ming county (86 common people) and Hainan Lingshui county (50 healthy elderly with long lives) in China, a plurality of circrnas are subjected to variable screening and L ASSO regression modeling, a healthy aging diagnosis model fitted by 22 circRNA markers is obtained, the coefficients of the L O regression model of the 22 healthy aging diagnosis circRNA markers are shown in table 1, the expression quantity of the measured circrnas is calculated in the multivariate regression model according to the coefficients corresponding to the 22 circrnas in table 1, the finally obtained result value is compared with the value "1", and the result is closer to 1, so that the healthy aging state of the subject is better.
TABLE 1 coefficients of regression model for 22 healthy aging diagnosis circRNA markers L ASSO
Figure BDA0002434168960000051
Wherein, compared with a control group, the 22 blood health aging diagnosis circRNA markers have increased expression in healthy and long-lived elderly people as follows: hsa _ circ _0005838, hsa _ circ _0007883, hsa _ circ _0069399, hsa _ circ _0001392, hsa _ circ _0007132, hsa _ circ _0000267, hsa _ circ _0000311, hsa _ circ _0001386, hsa _ circ _0000330, 9 in total.
Compared with a control group, the 22 circRNA markers for diagnosing blood health aging have reduced expression in healthy and long-lived elderly: hsa _ circ _0001788, hsa _ circ _0000396, hsa _ circ _0024193, hsa _ circ _0132409, hsa _ circ _0006037, hsa _ circ _0001317, hsa _ circ _0000497, hsa _ circ _0067716, hsa _ circ _0008234, hsa _ circ _0001346, hsa _ circ _0006965, hsa _ circ _0000259, hsa _ circ _0003496, 13 in total.
The ROC curve and accuracy judgment of the healthy aging prediction by the 22 healthy aging diagnosis circRNA marker L ASSO regression model are shown in FIG. 1 and FIG. 2, wherein FIG. 1 is the ROC curve of the healthy aging prediction, the area AUC under the line reaches 0.914, which shows that the diagnosis of the healthy aging by the regression model is very high in indication, FIG. 2 is a judgment of the model prediction accuracy, based on the model, the score value of the centenarian is mostly greater than 0.5, but the score value of the non-centenarian is basically less than 0.5, and the two groups of data have statistical significance, and p is less than 2.2 e-16.
Example 2 diagnosis of healthy aging use of circRNA marker for diagnosis of healthy aging
Step 1, taking fresh anticoagulated blood of the old aged over 65 years old, and extracting total RNA of leucocytes.
And 2, removing rRNA from the obtained RNA sample, preparing the sample according to an Illumina RNA-seq library preparation manual, and performing sequencing on an Illumina Hiseq-2500 platform after the preparation is finished and the quality detection is qualified. And identifying and quantifying circRNA according to the sequencing data by using a procedure of CIRCCexplor software, and finally obtaining the expression quantity data of all circRNA.
And 3, extracting expression value data of the 22 circRNA markers from the circRNA expression data, introducing the expression value data into the healthy aging diagnosis model, and analyzing the obtained score numerical value, wherein if the numerical value is more than 0.5 and is closer to 1, the characteristic tendency of healthy aging of the testee is higher, and conversely, the characteristic tendency of healthy aging is lower as the numerical value is closer to 0.
Wherein, the health aging diagnosis model is as follows: score is the sum of the coefficients for each circRNA marker plus 0.162271651 for the sample expression values.
The following table 2 lists the expression values of the 22 circRNA markers in this example 2.
TABLE 2 expression values of 22 circRNA markers in example 2
Figure BDA0002434168960000061
Figure BDA0002434168960000071
The circRNA expression data listed in table 2 above were included in the prediction model and score values were calculated.
Score=0.004813506*-2.8893159+-0.00602057*-1.2924478+0.054268028*-1.0886325+-0.043346135*-2.0680898+0.182245403*-0.3867061+-0.076498721*-1.7936834+-0.007908873*-23.5163253+0.030864014*-4.1989216+0.004586626*-2.5476627+-0.033309414*-2.695194+-0.020810454*-2.479106+0.043764647*-2.0763841+-0.12122826*-2.4648689+-0.02394792*-3.3713666+0.034194114*-2.3551334+-0.052395858*-5.1824166+0.058133963*-2.7962934+0.021816504*-1.883381+-0.003974949*-1.4069132+-0.004109221*-3.1118399+-0.019001008*-2.2118892+-0.01426827*-2.8124718+s0(0.162271651)=0.816
From the above, the sample has a score of 0.816, which is greater than 0.5 and close to 1, indicating a healthy aging propensity of the sample.
While the foregoing description shows and describes several preferred embodiments of the invention, it is to be understood, as noted above, that the invention is not limited to the forms disclosed herein, but is not to be construed as excluding other embodiments and is capable of use in various other combinations, modifications, and environments and is capable of changes within the scope of the inventive concept as expressed herein, commensurate with the above teachings, or the skill or knowledge of the relevant art. And that modifications and variations may be effected by those skilled in the art without departing from the spirit and scope of the invention as defined by the appended claims.
SEQUENCE LISTING
<110> Kunming animal research institute of Chinese academy of sciences
<120> healthy aging diagnosis circRNA marker and application
<130>2020
<160>22
<170>PatentIn version 3.3
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<211>484
<212>DNA
<213> human (human)
<400>8
aaagaaagaa ctttcagcta ccaagaaaga ccgtgtgaat cattgtctga caatatgtga 60
aaacatagtg gcacagtctg tcagaaattc tccagaattt cagaaacttc tgggcatcgc 120
tatggaactt tttctgctgt gcagtgatga cgcagagtca gatgtcagga tggtggctga 180
cgaatgcctc aacaaagtta tcaaagcttt gatggattct aatcttccaa ggttacagct 240
cgagctctat aaggaaatta aaaagaatgg tgcccctcgg agtttgcgtg ctgccctgtg 300
gaggtttgct gagctggctc acctggttcg gcctcagaaa tgcaggcctt acctggtgaa 360
ccttctgccg tgcctgactc gaacaagcaa gagacccgaa gaatcagtcc aggagacctt 420
ggctgcagct gttcccaaaa ttatggcttc ttttggcaat tttgcaaatg acaatgaaat 480
taag 484
<210>9
<211>2077
<212>DNA
<213> human (human)
<400>9
catccagagc tgctgttggc ggattgtacc cacggggaga tgattcctca tgaagagcct 60
ggatccccta cagaaatcaa atgtgacttt ccgtttatca gactaaaatc agagccatcc 120
agacagtgaa acagtcaccg tggagggggg acggcgaaaa atgaaatcca accaagagcg 180
gagcaacgaa tgcctgcctc ccaagaagcg cgagatcccc gccaccagcc ggtcctccga 240
ggagaaggcc cctaccctgc ccagcgacaa ccaccgggtg gagggcacag catggctccc 300
gggcaaccct ggtggccggg gccacggggg cgggaggcat gggccggcag ggacctcggt 360
ggagcttggt ttacaacagg gaataggttt acacaaagca ttgtccacag ggctggacta 420
ctccccgccc agcgctccca ggtctgtccc cgtggccacc acgctgcctg ccgcgtacgc 480
caccccgcag ccagggaccc cggtgtcccc cgtgcagtac gctcacctgc cgcacacctt 540
ccagttcatt gggtcctccc aatacagtgg aacctatgcc agcttcatcc catcacagct 600
gatcccccca accgccaacc ccgtcaccag tgcagtggcc tcggccgcag gggccaccac 660
tccatcccag cgctcccagc tggaggccta ttccactctg ctggccaaca tgggcagtct 720
gagccagacg ccgggacaca aggctgagca gcagcagcag cagcagcagc agcagcagca 780
gcagcatcag catcagcagc agcagcagca gcagcagcag cagcagcagc agcagcacct 840
cagcagggct ccggggctca tcaccccggg gtccccccca ccagcccagc agaaccagta 900
cgtccacatt tccagttctc cgcagaacac cggccgcacc gcctctcctc cggccatccc 960
cgtccacctc cacccccacc agacgatgat cccacacacg ctcaccctgg ggcccccctc 1020
ccaggtcgtc atgcaatacg ccgactccgg cagccacttt gtccctcggg aggccaccaa 1080
gaaagctgag agcagccggc tgcagcaggc catccaggcc aaggaggtcc tgaacggtga 1140
gatggagaag agccggcggt acggggcccc gtcctcagcc gacctgggcc tgggcaaggc 1200
aggcggcaag tcggttcctc acccgtacga gtccaggcac gtggtggtcc acccgagccc 1260
ctcagactac agcagtcgtg atccttcggg ggtccgggcc tctgtgatgg tcctgcccaa 1320
cagcaacacg cccgcagctg acctggaggt gcaacaggcc actcatcgtg aagcctcccc 1380
ttctaccctc aacgacaaaa gtggcctgca tttagggaag cctggccacc ggtcctacgc 1440
gctctcaccc cacacggtca ttcagaccac acacagtgct tcagagccac tcccggtggg 1500
actgccagcc acggccttct acgcagggac tcaaccccct gtcatcggct acctgagcgg 1560
ccagcagcaa gcaatcacct acgccggcag cctgccccag cacctggtga tccccggcac 1620
acagcccctg ctcatcccgg tcggcagcac tgacatggaa gcgtcggggg cagccccggc 1680
catagtcacg tcatcccccc agtttgctgc agtgcctcac acgttcgtca ccaccgccct 1740
tcccaagagc gagaacttca accctgaggc cctggtcacc caggccgcct acccagccat 1800
ggtgcaggcc cagatccacc tgcctgtggt gcagtccgtg gcctccccgg cggcggctcc 1860
ccctacgctg cctccctact tcatgaaagg ctccatcatc cagttggcca acggggagct 1920
aaagaaggtg gaagacttaa aaacagaaga tttcatccag agtgcagaga taagcaacga 1980
cctgaagatc gactccagca ccgtagagag gattgaagac agccatagcc cgggcgtggc 2040
cgtgatacag ttcgccgtcg gggagcaccg agcccag 2077
<210>10
<211>392
<212>DNA
<213> human (human)
<400>10
ggtatgttag agcccaccaa ggaaccactg aaaccacttt ctgctgcaga aaaaatagct 60
tccatcggtc agacagccac catgtcacca gatatgaaca catgtacatc tgatcagttc 120
caggagtctc taccacccgt ccagtttgac tggagtagca gtggccttac taacccttta 180
gatgctagtg gaggttccac tcttctgaac cttgatttct ttgggcccgt ggatgacagt 240
agctctagca gcagcaccac aatcccaggt gtggatccgg agttgtatga gttaacaact 300
tctaagctgg aaatctccac ctcaagcctc aaagtgactg atgcatttgc aagactcatg 360
tctacagtagagaagacaag cacatctacc ag 392
<210>11
<211>448
<212>DNA
<213> human (human)
<400>11
atcatgatgc tgcgattaat agatatagcc gtttatcaaa aaaaagagaa aatgacaagg 60
tgaagtatga agtaacagaa gatgtgtaca catccagaaa gaaacaacac cagaccatga 120
tgcattattt ttgtgcatta aatactcttc agtacaagaa gaaaatagca ttgttagaac 180
ctctacttgg gtacatgcaa gctcagataa gtttctttaa gatgggttct gaaaatctta 240
atgaacaact ggaagaattt ttagctaata ttggaacaag cgttcagaat gttcgcaggg 300
aaatggacag tgatatagag accatgcaac agacaataga ggatttggaa gtagccagtg 360
atcccttata tgtgcctgac ccagacccca ccaaatttcc tgttaatcga aatttaaccc 420
gaaaggctgg ataccttaat gctaggaa 448
<210>12
<211>773
<212>DNA
<213> human (human)
<400>12
aaaatgacag atggcgagac ctggacagga aatgccctct tcagattgac caaccgagca 60
ccagcatctg ggaatgcctg cctgaaaagg acagctcact atggcaccgg gaggcagtga 120
ccgcctgcgc tgtgaccagt ctgatcaaag acctcagcat cagcgaccac aacgggaacc 180
cctcagcacc ccctagcaag cgccagtgcc gctcactgtc cttctccgat gagatgtcca 240
gttgccggac atcatggagg cccttgggct ccaaagtctg gactcccgtg gaaaagagac 300
gctgctacag cgggggcagc gtccagcgct attccaacgg cttcagcacc atgcagagga 360
gttccagctt cagcctccct tcccgggcca acgtgctctc ctcaccctgc gaccaggcag 420
gactccacca ccgatttgga gggcagccct gccaaggggt gccaggctca gccccgtgtg 480
gacaggcagg tgacacctgg agccctgacc tgcaccccgt gggaggaggc cggctggacc 540
tgcagcggtc cctctcttgc tcacatgagc agttttcctt tgtggaatac tgtcctccct 600
cagccaacag cacacctgcc tcaacaccag agctggcgag acgctccagc ggcctttccc 660
gcagccgctc ccagccgtgt gtccttaacg acaagaaggt cggtgttaaa aggcggcgcc 720
ctgaagaagt gcaagagcag aggccttctc tagaccttgc caagatggca cag 773
<210>13
<211>788
<212>DNA
<213> human (human)
<400>13
gttatacatt ggctcttcaa agacgttcac ctcatcagag aaatccctga ctcctttgca 60
gtggtgtaga catgtcctag ataacccaac tcctgagatg gaagcagcga gacgttccct 120
gtgctttaga ctggagcaag gttacacttc caggggctcc ccactcagtc cccagtcatc 180
tatcgacagt gagctgagta cttcagaatt ggaggatgat tctatctcca tgggatataa 240
attacaggac ctcactgatg ttcagatcat ggctcgtctg caagaagaaa gtctcaggca 300
agattatgct tctacttcag catctgtatc aagacatagt tccagtgtgt cattgagttc 360
aggaaaaaaa gggacatgta gtgatcaaga atatgaccaa tacagtctgg aggatgaaga 420
ggaatttgat catttgccac cacctcagcc tcgtcttcca agatgttccc ctttccaaag 480
aggaattccc cattcacaga ctttctccag cattcgggag tgtaggagga gccccagttc 540
ccagtatttt ccttcaaata attaccagca gcaacagtat tattcacctc aagcccaaac 600
tccagatcag caaccaaata ggaccaatgg agataagctc cgaagaagta tgcctaacct 660
agcccggatg ccaagtacaa ctgccattag tagcaacatt agttctccgg tcaccgtgcg 720
aaatagtcag agttttgact caagcttgca tggagctgga aatggaattt caagaataca 780
atcttgta 788
<210>14
<211>337
<212>DNA
<213> human (human)
<400>14
gtgattttac aacgagatgc tgctctccat agggatgctc atgctgtcag ccacacaagt 60
ctacaccatc ttgactgtcc agctctttgc attcttaaac ctactgcctg tagaagcaga 120
cattttagca tataactttg aaaatgcatc tcagacattt gatgacctcc ctgcaagatt 180
tggttataga cttccagctg aaggtttaaa gggttttttg attaactcaa aaccagagaa 240
tgcctgtgaa cccatagtgc ctccaccagt aaaagacaat tcatctggca ctttcatcgt 300
gttaattaga agacttgatt gtaattttga tataaag 337
<210>15
<211>334
<212>DNA
<213> human (human)
<400>15
atgcttgctc tgtcaaggca cagcctattg tctcctttgc tcagtgtgac atcattcaga 60
cgcttctaca gaggtgacag cccaacagat tcccaaaagg acatgattga aatccctttg 120
cctccatggc aggagagaac tgatgaatcc atagaaacca aaagagcccg cctgctctat 180
gagagcagaa agaggggaat gttggaaaac tgcattcttc ttagtctttt tgctaaagaa 240
catctgcagc acatgacaga aaagcagctg aacctctatg accgcctgat taacgagcct 300
agtaatgact gggatattta ctactgggcc acag 334
<210>16
<211>587
<212>DNA
<213> human (human)
<400>16
gttcccgtgt cagtggctat gatgacacct caagttatca ctccccagca aatgcagcag 60
atcctccagc aacaagtgct gagccctcag cagctccagg ttctcctcca gcagcagcag 120
gccctcatgc ttcaacagca gcagcttcaa gagttttata aaaaacaaca ggaacagttg 180
cagcttcaac ttttacaaca acaacatgct ggaaaacagc ctaaagagca acagcaggtg 240
gctacccagc agttggcttt tcagcagcag cttttacaga tgcagcagtt acagcagcag 300
cacctcctgt ctttgcagcg ccaaggcctt ctgacaattc agcccgggca gcctgccctt 360
ccccttcaac ctcttgctca aggcatgatt ccaacagaac tgcagcagct ctggaaagaa 420
gtgacaagtg ctcatactgc agaagaaacc acaggcaaca atcacagcag tttggatctg 480
accacgacat gtgtctcctc ctctgcacct tccaagacct ccttaataat gaacccacat 540
gcctctacca atggacagct ctcagtccac actcccaaaa gggaaag 587
<210>17
<211>702
<212>DNA
<213> human (human)
<400>17
taagactttg accccgacgc aggcttcagt gattgccgcg gatcagaagc ctgagcactt 60
tggctcgaga caattaagga cgtgggatga ggctccgaga caggacgcgg ttctgcctgg 120
ggatcctgaa gataaaaagc tttgaaaagt cgaattcatg gtcgtggaag ctgagcccat 180
attaagagat gtcaggcgtc cgacctccga tcatgaacgg gcccctgcac ccgcggcccc 240
tggtggcatt gctggatggc cgggactgca cagtggagat gcccatcctg aaggacgtgg 300
ccactgtggc cttctgcgac gcgcagtcca cgcaggagat ccatgagaag gtcctgaacg 360
aggctgtggg ggccctgatg taccacacca tcactctcac cagggaggac ctggagaagt 420
tcaaagccct ccgcatcatc gtccggattg gcagtggttt tgacaacatc gacatcaagt 480
cggccgggga tttaggcatt gccgtctgca acgtgcccgc ggcgtctgtg gaggagacgg 540
ccgactcgac gctgtgccac atcctgaacc tgtaccggcg ggccacctgg ctgcaccagg 600
cgctgcggga gggcacacga gtccagagcg tcgagcagat ccgcgaggtg gcgtccggcg 660
ctgccaggat ccgcggggag accttgggca tcatcggact tg 702
<210>18
<211>424
<212>DNA
<213> human (human)
<400>18
gctcttgtca ggatggtgaa gctgttcatc ggaaacctgc cccgggaggc tacagagcag 60
gagattcgct cactcttcga gcagtatggg aaggtgctgg aatgtgacat cattaagaat 120
tacggctttg tgcacataga agacaagacg gcagctgagg atgccatacg caacctgcac 180
cattacaagc ttcatggggt gaacatcaac gtggaagcca gcaagaataa gagcaaaacc 240
tcaacaaagt tgcatgtggg caacatcagt cccacctgca ccaataagga gcttcgagcc 300
aagtttgagg agtatggtcc ggtcatcgaa tgtgacatcg tgaaagatta tgccttcgta 360
cacatggagc gggcagagga tgcagtggag gccatcaggg gccttgataa cacagagttt 420
caag 424
<210>19
<211>716
<212>DNA
<213> human (human)
<400>19
gtgattttac aacgagatgc tgctctccat agggatgctc atgctgtcag ccacacaagt 60
ctacaccatc ttgactgtcc agctctttgc attcttaaac ctactgcctg tagaagcaga 120
cattttagca tataactttg aaaatgcatc tcagacattt gatgacctcc ctgcaagatt 180
tggttataga cttccagctg aaggtttaaa gggttttttg attaactcaa aaccagagaa 240
tgcctgtgaa cccatagtgc ctccaccagt aaaagacaat tcatctggca ctttcatcgt 300
gttaattaga agacttgatt gtaattttga tataaaggtt ttaaatgcac agagagcagg 360
atacaaggca gccatagttc acaatgttga ttctgatgac ctcattagca tgggatccaa 420
cgacattgag gtactaaaga aaattgacat tccatctgtc tttattggtg aatcatcagc 480
taattctctg aaagatgaat tcacatatga aaaagggggc caccttatct tagttccaga 540
atttagtctt cctttggaat actacctaat tcccttcctt atcatagtgg gcatctgtct 600
catcttgata gtcattttca tgatcacaaa atttgtccag gatagacata gagctagaag 660
aaacagactt cgtaaagatc aacttaagaa acttcctgta cataaattca agaaag 716
<210>20
<211>443
<212>DNA
<213> human (human)
<400>20
caaaagagaa gaaaaaacct gaagattctc cctcagatga tgatgttctc attgtatatg 60
aactaactcc aaccgctgag cagaaagccc ttgcaaccaa acttaaactt cctccaactt 120
tcttctgcta caagaataga ccagattatg ttagtgaaga agaggaggat gatgaagatt 180
tcgaaacagc tgtcaagaaa cttaatggaa aactatattt ggatggctca gaaaaatgta 240
gacccttgga agaaaataca gcagataatg agaaagaatg tattattgtt tgggaaaaga 300
aaccaacagt tgaagagaag gcaaaagcag atacgttaaa acttccacct acattttttt 360
gtggagtctg tagtgatact gatgaagaca atggaaatgg ggaggacttt caatcagagc 420
ttcaaaaagt tcaggaagct caa 443
<210>21
<211>528
<212>DNA
<213> human (human)
<400>21
agtaaaaagc gacaatatga ccaggaaatt gagaatctag aaaaacagca gaaacagact 60
atcgaacgcc tggaacaaga gcacacaaat cgcttgcgag atgaagccaa acgcatcaaa 120
ggagaacaag agaaagagtt gtccaaattt cagaatatgc tgaagaaccg aaagaaggag 180
gttataaatg aagtggagaa agcacccaaa gagctgagaa aagagctcat gaaacgcagg 240
aaagaggagc ttgcacaaag ccagcatgct caggaacaag agtttgttca gaaacaacag 300
caagaattag atggctctct gaaaaagatc atccagcagc agaaggcaga gttagctaat 360
attgagagag agtgcctgaa taacaagcaa cagctcatga gagctcgaga agctgcaatt 420
tgggagctcg aagaacgaca cttacaagaa aaacaccagc tgctcaaaca gcagcttaaa 480
gatcagtatt tcatgcaaag acatcagcta cttaagcgcc acgagaag 528
<210>22
<211>404
<212>DNA
<213> human (human)
<400>22
cattgatctg gtagccttgc tccagaagcc tgttcctcac agtcaagcct cagaagccaa 60
ctcctttgaa acttcccaac agcagggctt tggccaagcc cttgtcttca caaattcgca 120
acacaacaat cagatggcac cagggactgg cagctccact gccgtcaact cctgttctcc 180
tcagagcctg tcatccgtcc ttggctcagg atttggagag cttgcaccac caaaaatggc 240
aaacatcacc agctcccaga ttttggacca gttgaaagct ccgagtttgg gccagtttac 300
caccacccca agtacacagc agaatagtac aagtcaccct acaactacta cttcttggga 360
cctcaagccc ccaacatccc agtcctcagt cctcagtcat cttg 404

Claims (10)

1. A healthy aging diagnosis circRNA marker, which comprises one or more of hsa _ circ _0005838, hsa _ circ _0001788, hsa _ circ _0007883, hsa _ circ _0000396, hsa _ circ _0069399, hsa _ circ _0024193, hsa _ circ _0132409, hsa _ circ _0001392, hsa _ circ _0007132, hsa _ circ _0006037, hsa _ circ _0001317, hsa _ circ _0000267, hsa _ circ _0000497, hsa _ circ _0067716, hsa _ circ _ 84, hsa _ circ _0008234 a _ circ _0001386, hsa _ circ _0000330, hsa _ circ _0001346, hsa _ circ _ 5 _ circ _0000259, and hsa _ circ _ 0000259.
2. The healthy aging diagnostic circRNA marker of claim 1, wherein the sequence of hsa _ circ _0005838, hsa _ circ _0001788, hsa _ circ _0007883, hsa _ circ _0000396hsa _ circ _0069399, hsa _ circ _0024193, hsa _ circ _0132409, hsa _ circ _0001392, hsa _ circ _0007132, hsa _ circ _0006037, hsa _ circ _0001317, hsa _ circ _0000267, hsa _ circ _0000497, hsa _ circ _0067716, hsa _ circ _ 84, hsa _ circ _0008234, hsa _ circ _0001386, hsa _ circ _0000330, hsa _ circ _0001346, hsa _ circ _ 5 _ circ _0000259, and SEQ id No. 22-5822.
3. Use of the healthy aging diagnostic circRNA marker in the preparation of a healthy aging early diagnosis product according to claim 1, wherein the diagnosis product comprises a reagent for detecting the one or more markers, and the reagent judges whether the subject has a healthy aging possibility by detecting the expression value of the one or more markers in the subject.
4. Use according to claim 3, in particular for detecting the expression value of one or more markers in the blood of a subject.
5. Use according to claim 3, wherein the expression of the markers hsa _ circ _0005838, hsa _ circ _0007883, hsa _ circ _0069399, hsa _ circ _0001392, hsa _ circ _0007132, hsa _ circ _0000267, hsa _ circ _0000311, hsa _ circ _0001386, hsa _ circ _0000330 is significantly increased in healthy elderly.
6. Use according to claim 3, wherein the markers hsa _ circ _0001788, hsa _ circ _0000396, hsa _ circ _0024193, hsa _ circ _0132409, hsa _ circ _0006037, hsa _ circ _0001317, hsa _ circ _0000497, hsa _ circ _0067716, hsa _ circ _0008234, hsa _ circ _0001346, hsa _ circ _0006965, hsa _ circ _0000259, hsa _ circ _0003496 are expressed significantly in the elderly of healthy aging.
7. The use according to any one of claims 3 to 6, wherein the diagnostic product is a kit, chip or assay platform.
8. Use of the healthy aging diagnostic circRNA marker of claim 1 for diagnosing healthy aging.
9. Use according to claim 8, characterized in that it comprises the following steps:
step 1, taking fresh anticoagulated blood of an old aged over 65 years old, and extracting total RNA of leucocytes;
step 2, removing rRNA from the obtained RNA sample, preparing the sample according to an Illumina RNA-seq library preparation manual, and performing sequencing on an Illumina Hiseq-2500 platform after the preparation is finished and the quality detection is qualified; identifying and quantifying circRNA according to the sequencing data by using a procedure of CIRCCexplor software, and finally obtaining expression data of all circRNA;
and 3, extracting expression value data of the 22 circRNA markers from the circRNA expression data, introducing the expression value data into a healthy aging diagnosis model, and analyzing the obtained score numerical value, wherein if the numerical value is more than 0.5 and is closer to 1, the characteristic tendency of healthy aging of the testee is higher, and conversely, the characteristic tendency of healthy aging is lower as the numerical value is closer to 0.
10. The use according to claim 9, wherein the healthy aging diagnostic model is: score is the sum of the coefficients for each circRNA marker plus 0.162271651 for the sample expression values.
CN202010247925.1A 2020-03-31 2020-03-31 Health aging diagnosis circRNA marker and application Pending CN111424079A (en)

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CN112011620B (en) * 2020-09-23 2021-04-27 山东大学第二医院 Application of circ-SLC38A1 as target in medicine for inhibiting bladder cancer cells
CN114410770A (en) * 2021-12-28 2022-04-29 核工业总医院 Detection method for diagnosing staphylococcus aureus bloodstream infection and kit thereof
CN114317750A (en) * 2021-12-29 2022-04-12 上海市第十人民医院 Ovarian cancer biomarker and application thereof in preparation of drugs or kits for treating ovarian cancer ascites metastasis diseases

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Application publication date: 20200717