CN110029183A - A kind of primer, detection method and kit for identifying tobacco PVY resistance - Google Patents

A kind of primer, detection method and kit for identifying tobacco PVY resistance Download PDF

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Publication number
CN110029183A
CN110029183A CN201810026574.4A CN201810026574A CN110029183A CN 110029183 A CN110029183 A CN 110029183A CN 201810026574 A CN201810026574 A CN 201810026574A CN 110029183 A CN110029183 A CN 110029183A
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primer
tobacco
pvy
pvy resistance
detection method
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刘旦
龚敏
杨爱国
程立锐
蒋彩虹
冯全福
王元英
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Tobacco Research Institute of CAAS
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    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12QMEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6876Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes
    • C12Q1/6888Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for detection or identification of organisms
    • C12Q1/6895Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for detection or identification of organisms for plants, fungi or algae
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12QMEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q2600/00Oligonucleotides characterized by their use
    • C12Q2600/13Plant traits

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Abstract

The invention belongs to biological gene detection fields, and in particular to a kind of primer, detection method and kit for identifying tobacco PVY resistance, the sequence of the primer pair is as shown in SEQ ID NO:1 and SEQ ID NO:2, the method for inspection are as follows: is directed to tobaccoeIF4E1A pair of of specific primer is designed in gene order specific regions, using tobacco bred DNA to be detected as template, is translated and is detected by PCR amplificationeIF4E1Gene;Primer and its detection method of the invention has many advantages, such as that easy to operate, result is reliable, detection speed is fast, flux is high, the Breeding Process of anti-PVY breeding material can be significantly speeded up, shorten breeding cycle, improves breeding efficiency, apply also for tobacco germplasm and kind PVY Resistance Identification.

Description

A kind of primer, detection method and kit for identifying tobacco PVY resistance
Technical field
Biological gene detection field, and in particular to a kind of primer, detection method and reagent for identifying tobacco PVY resistance Box.
Background technique
PVY virus belongs to systematicness dip dyeing virus, and main parasitic is on plant of Solanaceae such as tobacco, tomato, capsicum, eggplant etc. Crop.According to statistics according to imperfect number, -2015 years 2012 China tobaccos are 1,160,000 mu accumulative by the harm of PVY virus, yield of tobacco More than 17000 tons, economic loss is more than 2.75 hundred million yuan for loss.There is no the means of effective treatment PVY, the anti-PVY of breeding at present Kind be most economical, most effective measure.
In the anti-PVY breeding process of tradition, PVY Resistance Identification method is mainly crop field inoculated identification and greenhouse inoculated identification. The two methods are cumbersome, heavy workload, and qualification cycle is long, is influenced by planting environment, and uncontrollable factor is more, and are inoculated with The success or not of virus also directly affects qualification result, and then influences the judgement to tobacco bred PVY resistance.
At present in production the anti-source of PVY virosis that mainly utilizes from burley tobaccos VAM (Virgin A Mutant), Resistance controls (va) by single recessive gene.For the resistance locus, develop both at home and abroad relevant molecular labeling (RAPD, SCAR).But these labels and the genetic distance of PVY resistance are farther out, judge that resistance error is larger using flag data.2015, The va assignment of genes gene mapping in No. 21 linkage group of tobacco and is obtained gene order by the method for map based cloning by Julio etc..It should Gene is a susceptible gene, is eukaryotic translation initiation factor eIF4E1, and potato Y disease can be limited after loss of function Poison belongs to the intercellular movement of virus, and then increases the PVY resistance of plant.
Summary of the invention
In view of the defects existing in the prior art, the present invention provide it is a kind of identify the primer of tobacco PVY resistance, detection method and Kit detects different tobacco bred PVY resistances using the susceptible gene eIF4E1 sequence design specific primer of PVY;The present invention Resistance Identification method do not influenced by growth conditions and developmental stage, can detection rapidly and efficiently be based on the control of eIF4E1 gene The PVY resistance of system accelerates breeding process, improves breeding efficiency.
An object of the present invention is to provide a kind of primer for identifying tobacco PVY resistance, and the second purpose, which is to provide to utilize, is somebody's turn to do Primer carries out amplification purpose nucleotide sequence, the detection method then identified, the third purpose is that one kind is drawn containing this altogether The kit of object, primer of the invention and its detection method have easy to operate, result is reliable, detection speed is fast, flux is high etc. Advantage can significantly speed up the Breeding Process of anti-PVY breeding material, shorten breeding cycle, improve breeding efficiency, can also apply In tobacco germplasm and kind PVY Resistance Identification.
An object of the present invention is to be achieved through the following technical solutions:
The primer of the identification tobacco PVY resistance, the primer are for detecting the susceptible gene eIF4E1 sequence of tobacco PVY It is designed specific primer, including upstream primer PVY1F and downstream primer PVY1R;
Wherein, the upstream primer PVY1F nucleotide sequence is as shown in SEQ ID NO:1;
Are as follows: 5 '-AACCACCCAAGCAAGTTAGT-3 ';
The downstream primer PVY1R nucleotide sequence is as shown in SEQ ID NO:2:
Are as follows: 5 '-ATTTTATCCCCCTTATTTCG-3 '.
The sequence of eIF4E1 gene order of the present invention specific regions is as follows:
AACCACCCAAGCAAGTTAGTTGTGGGAGCAGACTTTCATTGTTTTAAGCATAAAATTGAGCCAAAGTGG GAAGATCCTGTATGTGCGAATGGAGGGAATTGGACAATGAGCTTTAGTAAGGGTAAATCTGATACCAGCTGGCTATA CACGGTATGCTGAGGATATTTTAATCCAGTTCTTAATGTTAGGGCGCAGTCTCGTAAAGTTATTTTCCCCTTTGATA TTATTTCAACTCTTATTTTCTCATTTGGGATTATTGTAGCTGCTGGCAATGATTGGACATCAATTCGATCATGGAGA GGAAATTTGTGGAGCAGTAGTTAGCGTCCGAAATAAGGGGGATAAAAT
In above-mentioned eIF4E1 gene order specific regions, before draw underscore sequence be upstream primer PVY1F;Afterwards The reverse complementary sequence that underlined sequences are drawn in face is downstream primer PVY1R.
The second object of the present invention is to be achieved through the following technical solutions:
A kind of detection method for identifying tobacco PVY resistance, comprising the following steps:
S1, the DNA for being detected tobacco-containing material is extracted;
S2, by the DNA of detected tobacco-containing material described in step S1 be template, using specific primer to DNA profiling PCR amplification is carried out, DNA cloning product is obtained;
S3, DNA cloning product is detected using agarose gel electrophoresis, when 348bp occurs in gel in pcr amplification product When corresponding electrophoretic band, the detected tobacco-containing material is free of eIF4E1 gene, has PVY resistance;When pcr amplification product exists When not occurring the corresponding electrophoretic band of 348bp in gel, the detected tobacco-containing material, which does not have, is based on the control of eIF4E1 gene The PVY resistance of system;
Wherein specific primer described in step S2 uses above-mentioned primer i.e.: drawing including upstream primer PVY1F and downstream Object PVY1R;
Wherein, the upstream primer PVY1F nucleotide sequence is as shown in SEQ ID NO:1;
Are as follows: 5 '-AACCACCCAAGCAAGTTAGT-3 ';
The downstream primer PVY1R nucleotide sequence is as shown in SEQ ID NO:2:
Are as follows: 5 '-ATTTTATCCCCCTTATTTCG-3 '.
The second object of the present invention can also be achieved through the following technical solutions:
In the detection method of above-mentioned identification tobacco PVY resistance, the reaction system of PCR amplification described in step S2 is as follows:
2×Power Taq PCR MasterMix 10μl;
10 μM of 1 μ l of upstream primer;
10 μM of 1 μ l of downstream primer;
Distilled water is mended to 20 μ l.
Further, the reaction condition of PCR amplification described in step S2 is as follows:
95 DEG C of initial denaturation 2min;
95 DEG C of denaturation 30s, 52 DEG C of annealing 30s, 72 DEG C of extension 30s, 30 recycle;
Last 72 DEG C of extensions 7min.
Further, the template of DNA described in step S2 is 50-100ng in the dosage of the reaction system of PCR amplification.
The third object of the present invention is achieved through the following technical solutions:
A kind of kit for identifying tobacco PVY resistance, the kit includes: PCR reaction reagent and primer;The primer For the primer of identification tobacco PVY resistance described above, it may be assumed that including upstream primer PVY1F and downstream primer PVY1R;
Wherein, the upstream primer PVY1F nucleotide sequence is as shown in SEQ ID NO:1;
Are as follows: 5 '-AACCACCCAAGCAAGTTAGT-3 ';
The downstream primer PVY1R nucleotide sequence is as shown in SEQ ID NO:2:
Are as follows: 5 '-ATTTTATCCCCCTTATTTCG-3 '.
Compared with prior art, the primer of identification tobacco PVY resistance provided by the present invention and its detection method and reagent Box has the advantages that
The primer of identification tobacco PVY resistance provided by the present invention is designed based on eIF4E1 gene specific sequence, by straight The PVY resistance for detecting the presence or absence of susceptible gene eIF4E1 to judge tobacco bred is connect, with the reported related molecular marker of document It compares, testing result is more accurate reliable.The primer and its detection method and reagent of identification tobacco PVY resistance provided by the invention Box can shorten breeding process, improve breeding efficiency, while quick, high throughput applied to tobacco germplasm and kind PVY Resistance Identification.
Detailed description of the invention
Fig. 1 is the amplification in the 30 parts of tobacco breds to be measured identified using detection method, wherein swimming Road M is DL500DNA Ladder;
The first row, are as follows: after swimming lane M be 1-15 parts of tobacco breds to be measured detection track, swim from left to right Road be followed successively by CV88, CV87, FC8, VAM, anti-88, CV91, C151, CV58, middle cigarette 103, build wave 1, NC55, cloud and mist 87, in Cigarette 100, NC82, Hongda tobacco;
Second row, are as follows: after swimming lane M be 16-30 parts of tobacco breds to be measured detection track, swim from left to right Road be followed successively by K326, TN86, TN90, V2, small gold 1025, Speight-G28, great Bai muscle 599, middle cigarette 15,9201, NC567, K346, Coker176, Yun yan85, No. 1 dark green, middle cigarette 98.
Specific embodiment
Below by specific embodiment and in conjunction with attached drawing, invention is further described in detail.Following case study on implementation is only The present invention is further detailed, should not be construed as limiting the invention.
A kind of primer for identifying tobacco PVY resistance of embodiment 1
The primer of the identification tobacco PVY resistance, including upstream primer PVY1F and downstream primer PVY1R;
Wherein, the upstream primer PVY1F nucleotide sequence is as shown in SEQ ID NO:1;
Are as follows: 5 '-AACCACCCAAGCAAGTTAGT-3 ';
The downstream primer PVY1R nucleotide sequence is as shown in SEQ ID NO:2:
Are as follows: 5 '-ATTTTATCCCCCTTATTTCG-3 '.
A kind of detection method for identifying tobacco PVY resistance of embodiment 2
The following steps are included:
S1, the DNA for being detected tobacco-containing material is extracted;
S2, by the DNA of detected tobacco-containing material described in step S1 be template, using specific primer to DNA profiling PCR amplification is carried out, the template consumption of DNA is 50-100ng, obtains DNA cloning product;Wherein the specific primer uses The primer for the identification tobacco PVY resistance that embodiment 1 provides;
S3, DNA cloning product is detected using agarose gel electrophoresis, when 348bp occurs in gel in pcr amplification product When corresponding electrophoretic band, the detected tobacco-containing material is free of eIF4E1 gene, has PVY resistance;When pcr amplification product exists When not occurring the corresponding electrophoretic band of 348bp in gel, the detected tobacco-containing material, which does not have, is based on the control of eIF4E1 gene The PVY resistance of system;
Wherein, specific primer described in step S2 uses primer described in embodiment 1.
Wherein, the reaction system of PCR amplification described in step S2 is as follows:
2×Power Taq PCR MasterMix 10μl;
10 μM of 1 μ l of upstream primer;
10 μM of 1 μ l of downstream primer;
Distilled water is mended to 20 μ l.
The reaction condition of PCR amplification described in step S2 is as follows:
95 DEG C of initial denaturation 2min;
95 DEG C of denaturation 30s, 52 DEG C of annealing 30s, 72 DEG C of extension 30s, 30 recycle;
Last 72 DEG C of extensions 7min.
A kind of kit for identifying tobacco PVY resistance of embodiment 3
The kit includes the primer and PCR reaction reagent of identification tobacco PVY resistance described in embodiment 1;The examination The detection method of agent box such as embodiment 2.
Test example 1 verifies identification result
Subjects: the artificial group of F2, source are as follows: with disease-resistant variety VAM be male parent, susceptible variety K326 is hybridization of female parent The seed of F1 generation is obtained, then is selfed to obtain F2 group by F1.
The phenotypic evaluation of tobacco F2 generation individual:
F2 seed is sowed, is placed in artificial climate room, 25 DEG C of cultures carry out being transplanted in small flower after seedling grows up Face, obtains F2 for 282 plants of single plant, seedling it is long to the 5-6 leaf phase when take blade 0.1g, with liquid nitrogen flash freezer, -80 DEG C of preservations, for mentioning Take DNA.It after sampling, carries out manually connecing poison using the method for frictional inoculation, PVY virus is the downright bad strain 9703-5 (public Can be obtained from Tobacco Institute, Chinese Academy of Agricultural Science), Disease investigation is carried out after being inoculated with 21d.Without floral leaf, arteries and veins band and leaf when investigation The PVY symptom such as arteries and veins necrosis is denoted as disease-resistant (R);The PVY symptoms such as floral leaf, arteries and veins band and vein necrosis are showed when investigation, are denoted as susceptible (S);Obtain the phenotypic data of 282 single plants of F2.
Test result: identifying that the detection method of tobacco PVY resistance identifies 282 single plants of F2 by embodiment 2, right PCR product carries out agarose gel electrophoresis, and testing result is 79 plants of anti-PVY plant pcr amplification products without 348bp size Band, 203 plants of sense PVY plant pcr amplification products have the band of 348bp size.Testing result and Resistance Identification result are complete It is consistent, illustrates that primer designed by the present invention can be used for the identification of PVY resistance in artificial constructed tobacco group, do not amplify 348bp band is anti-PVY material.Found by test example 1, primer of the invention and its detection method have it is easy to operate, As a result reliable, the Breeding Process of anti-PVY breeding material can be significantly speeded up, breeding cycle is shortened, breeding efficiency is improved, may be used also Applied to tobacco germplasm and kind PVY Resistance Identification.
2 qualification test of test example
Resistance Identification is carried out to 30 tobacco breds to be measured using kit described in embodiment 3.
Subjects: material source: tobacco bred saves that (public can be from from Tobacco Institute, Chinese Academy of Agricultural Science Tobacco Institute, Chinese Academy of Agricultural Science obtains).Tobacco bred to be measured is seeded in seedlings nursing plate, is placed in artificial climate room, 25 DEG C of cultures take blade 0.1g when seedling seedling length to the 5-6 leaf phase, and with liquid nitrogen flash freezer, -80 DEG C are saved, for extracting DNA, The extraction of tobacco sample DNA is carried out using routine CTAB method.
PCR amplification is carried out to the DNA of kind to be detected using kit of the invention, the reaction system of PCR amplification and anti- Answer program with embodiment 2.Agarose gel electrophoresis is carried out to PCR product, amplification is as shown in Figure 1, for using present invention inspection The amplification in 30 parts of tobacco breds to be measured that survey method is identified, wherein swimming lane negative control is water, and swimming lane M is DL500DNA Ladder;
The first row in Fig. 1, DNA profiling dosage are 50ng, and swimming lane is followed successively by CV88, CV87, FC8, VAM, resists from left to right 88, CV91, C151, CV58, middle cigarette 103, build wave 1, NC55, cloud and mist 87, Zhongyan-100, NC82, Hongda tobacco;
Second row in Fig. 1, DNA profiling dosage are 100ng, and swimming lane is followed successively by K326, TN86, TN90, V2, small from left to right Gold 1025, Speight-G28, great Bai muscle 599, middle cigarette 15,9201, NC567, K346, Coker176, Yun yan85, dark green 1 Number, middle cigarette 98.
According to the testing result of Fig. 1, arranged into table 1, as a result see Table 1 for details;
Table 1
From table 1 it follows that the advantages that kit detection speed disclosed by the invention is fast, flux is high, it can be greatly Accelerate the Breeding Process of anti-PVY breeding material, shorten breeding cycle, improves breeding efficiency, apply also for tobacco germplasm With kind PVY Resistance Identification.
Sequence table
<110>Tobacco Institute, Chinese Academy of Agricultural Science
<120>a kind of primer, detection method and kit for identifying tobacco PVY resistance
<160> 2
<170> SIPOSequenceListing 1.0
<210> 1
<211> 20
<212> DNA
<213>artificial sequence (Artificial Sequence)
<400> 1
aaccacccaa gcaagttagt 20
<210> 2
<211> 20
<212> DNA
<213>artificial sequence (Artificial Sequence)
<400> 2
attttatccc ccttatttcg 20

Claims (6)

1. a kind of primer for identifying tobacco PVY resistance, which is characterized in that the primer is for detecting the susceptible base of tobacco PVY Because eIF4E1 sequence design obtains specific primer, including upstream primer PVY1F and downstream primer PVY1R;
Wherein, the upstream primer PVY1F nucleotide sequence is as shown in SEQ ID NO:1;
The downstream primer PVY1R nucleotide sequence is as shown in SEQ ID NO:2.
2. a kind of detection method for identifying tobacco PVY resistance, which comprises the following steps:
S1, the DNA for being detected tobacco-containing material is extracted;
S2, by the DNA of detected tobacco-containing material described in step S1 be template, using specific primer to DNA profiling carry out PCR amplification obtains DNA cloning product;
S3, DNA cloning product is detected using agarose gel electrophoresis, is corresponded to when 348bp occurs in gel in pcr amplification product Electrophoretic band when, the detected tobacco-containing material be free of eIF4E1 gene, have PVY resistance;When pcr amplification product is in gel In when there is not the corresponding electrophoretic band of 348bp, the detected tobacco-containing material does not have to be controlled based on eIF4E1 gene PVY resistance;
Specific primer described in step S2 is the primer of identification tobacco PVY resistance described in claim 1.
3. the detection method of identification tobacco PVY resistance according to claim 2, which is characterized in that described in step S2 The reaction system of PCR amplification is as follows:
2×Power Taq PCR MasterMix 10μl;
10 μM of 1 μ l of upstream primer;
10 μM of 1 μ l of downstream primer;
Distilled water is mended to 20 μ l.
4. the detection method of identification tobacco PVY resistance according to claim 2, which is characterized in that described in step S2 The reaction condition of PCR amplification is as follows:
95 DEG C of initial denaturation 2min;
95 DEG C of denaturation 30s, 52 DEG C of annealing 30s, 72 DEG C of extension 30s, 30 recycle;
Last 72 DEG C of extensions 7min.
5. the detection method of identification tobacco PVY resistance according to claim 2, which is characterized in that described in step S2 The template of DNA is 50-100ng in the dosage of the reaction system of PCR amplification.
6. a kind of kit for identifying tobacco PVY resistance, which is characterized in that the kit includes: PCR reaction reagent and draws Object;The primer is the primer of identification tobacco PVY resistance described in claim 1.
CN201810026574.4A 2018-01-12 2018-01-12 A kind of primer, detection method and kit for identifying tobacco PVY resistance Pending CN110029183A (en)

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Cited By (1)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
CN111996277A (en) * 2020-08-31 2020-11-27 中国烟草总公司郑州烟草研究院 Tobacco PVY early warning gene Ntab0691000 and application thereof

Citations (2)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
CN103820465A (en) * 2013-12-16 2014-05-28 云南省烟草农业科学研究院 Tobacco recessive PVY (Potato Virus Y) resistance gene eIF4E-1 and application thereof
CN103898228A (en) * 2014-04-15 2014-07-02 云南省烟草农业科学研究院 Molecular marker for identifying potato virus Y (PVY) resistance of tobacco

Patent Citations (2)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
CN103820465A (en) * 2013-12-16 2014-05-28 云南省烟草农业科学研究院 Tobacco recessive PVY (Potato Virus Y) resistance gene eIF4E-1 and application thereof
CN103898228A (en) * 2014-04-15 2014-07-02 云南省烟草农业科学研究院 Molecular marker for identifying potato virus Y (PVY) resistance of tobacco

Cited By (2)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
CN111996277A (en) * 2020-08-31 2020-11-27 中国烟草总公司郑州烟草研究院 Tobacco PVY early warning gene Ntab0691000 and application thereof
CN111996277B (en) * 2020-08-31 2022-06-03 中国烟草总公司郑州烟草研究院 Tobacco PVY early warning gene Ntab0691000 and application thereof

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