CN109913524B - Use of Prevotella for identifying and/or differentiating individuals of different ethnic groups - Google Patents
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Abstract
The invention provides application of a microbial marker in identifying and/or distinguishing different ethnic groups of individuals, wherein the microbial marker is Prevotella.
Description
Technical Field
The invention belongs to the field of biological identification and/or differentiation, and particularly relates to application of Prevotella in identification and/or differentiation of different ethnic individuals.
Background
There is a large number of commensal flora in the human intestinal tract, which number exceeds 1000 trillion and is about 10 times of the total number of human cells. Meanwhile, the number of microbial genes in the intestinal tract is about 300 ten thousand, which is about 100 times of the number of human genome genes, so that the mass of genes can help the microbes to adapt to changeable environments, and an inseparable symbiotic relationship with a human body is formed. Residents with different genetic backgrounds and living habits have large differences in the composition of intestinal flora, for example, bacteroides is the bacterial genus with the highest relative content in intestinal tracts of western residents and the largest difference among individuals, and korean residents are copromorphus. At present, the research data of the structural difference comparison of intestinal flora of different nationalities in China is insufficient.
Prevotella genus Bacteroides phylum, anaerobic, has been previously found to be an opportunistic pathogen.
The patent CN107002021A discloses a biomarker of rheumatoid arthritis and its application, and the prior art discloses that microorganisms such as Prevotella copri CB7 are used for predicting diseases related to microbiota of subjects.
A method and system for the diagnosis and treatment of microbiome origin is disclosed in patent CN107075588A, which prior art discloses the characterization of the genus Prevotella for the diagnosis of crohn's disease.
Guzhuang has been studied in doctor's academic paper, research on the structure of intestinal microflora of different populations by pyrosequencing technology, and has shown that lifestyle and genotype have significant influence on the formation of intestinal microflora of people, and meanwhile, research has shown that the specific OUTs of Han and Tibetan residents are mainly Lautersia (Blautia) and Prevotella (Prevotella) bacteria.
The use of Prevotella in identifying and/or differentiating ethnic groups of a population is not disclosed in the prior art.
Disclosure of Invention
In a first aspect, the invention provides an application of a microbial marker in identifying and/or distinguishing Tibetan individuals and Han individuals on plateaus, wherein the microbial marker is Prevotella.
The Prevotella includes Prevotella melanogenes, Prevotella intermedia, Prevotella anthropogonis, Prevotella denticola, Prevotella lodest, Prevotella melanogaster, Prevotella chevalis, Prevotella pallidum, Prevotella bucca, Prevotella oralis, Prevotella bikurina, Prevotella saccharicola and Prevotella gingivalis.
The plateau is above the altitude of 2000m and has the conditions of low pressure and oxygen deficiency.
Further preferably, the plateau environment is above an altitude of 2700m and has low pressure and oxygen deficiency.
In one embodiment of the present invention, the plateau environment is above 3500m in altitude, and has low pressure and oxygen-deficient conditions.
In one embodiment of the present invention, the plateau environment is above 5500m in altitude, and has low pressure and oxygen-deficient conditions.
In a second aspect, the present invention provides a method for identifying and/or distinguishing Tibetan and Han individuals on plateau, said method comprising the steps of:
(1) determining the abundance of a microbial marker in the stool or intestinal contents of said individual;
(2) comparing the abundance value of the microbial marker with a threshold value to know the ethnicity of the individual.
Preferably, the abundance of the microbial marker is determined by a sequencing method in the step (1).
More preferably, the step (1) comprises:
1) collecting the excrement or intestinal contents of an individual to be detected, and extracting the DNA of microorganisms in the excrement or the intestinal contents;
2) amplifying a target fragment;
3) sequencing;
4) and (4) calculating the abundance of the microbial marker.
The method for extracting the DNA of the microorganism in the excrement or intestinal contents in the step 1) is selected from the following steps: the CTAB method, the GITC method or the method using a commercial kit.
Preferably, the DNA of the microorganisms in the stool or intestinal contents is extracted using the CTAB method.
Specifically, collected excrement or intestinal contents are treated by CTAB, lysozyme and a lysis solution, then treated by phenol, chloroform and isoamylol to dissociate DNA and remove foreign proteins, the DNA is precipitated by isopropanol, and the DNA is purified by ethanol to obtain the DNA of microorganisms in the excrement or the intestinal contents.
More specifically, collecting the feces of the individual to be detected, sucking 500-: chloroform: isoamyl alcohol (20-30: 18-28: 1), reversing and mixing evenly, and centrifuging for 10-15min at 10000-12000 rpm. Taking the supernatant, adding chloroform: isoamyl alcohol (20-30: 1), reversing and mixing evenly, and centrifuging for 10-15min at 10000-. The supernatant was taken, added with isopropanol, shaken up and down and precipitated at-20 ℃. 10000-12000rpm for 10-15min, washing the precipitate with ethanol for 2-5 times, drying the precipitate, adding water to dissolve the precipitate, adding RNase A to digest RNA to obtain the DNA of the microorganism in the feces or intestinal contents.
And (2) amplifying the DNA obtained in the step (1) by using specific primers 515F and 806R with Barcode, wherein the sequence of the 515F is 5 '-GTGCCAGCMGCCGCGGTAA-3' (SEQ ID NO: 1) and 806R has a sequence of 5 '-GGACTACHVGGGTWTCTAAT-3' (SEQ ID NO: 2).
In the step 3), sequencing is carried out on the product obtained in the step (2) by using a high-throughput sequencing method.
And 4) clustering the data obtained by sequencing into OTUs (operational Taxonomic units), and calculating the abundance of the microbial markers after annotation analysis of the species.
Specifically, in the step 4), the data obtained by sequencing in the step 3) is processed, effective data is clustered into OTUs (operational Taxomic units) by using Upase software (Upase v7.0.1001, http:// www.drive5.com/uppase /), species annotation analysis is carried out on OTUs sequences by using a Mothur method and a SSURRNA database of SILVA (http:// www.arb-SILVA. de /), and the relative abundance of the microbial markers is expressed by (the OTU value of the microbial markers)/(the OTU values of all the genera detected by the detection sample).
And (2) comparing the measured abundance of the microbial marker with a threshold value, wherein one ethnic group is greater than the threshold value and the other ethnic group is smaller than the threshold value.
The threshold is the abundance of the microbial marker obtained when the john index of a working characteristic curve of the subject established after the detection of the abundance of the microbial marker is carried out on the population of the known ethnic group is the maximum value.
Preferably, the present invention provides a method for identifying and/or distinguishing an individual as a Tibetan and a Han on plateau, the method comprising the steps of:
(1) determining the abundance of Prevotella in the stool or intestinal contents of said individual;
(2) comparing the abundance of Prevotella to a threshold of 1.43X 10-1When the abundance of Prevotella in the feces or intestinal contents of an individual is greater than 1.43X 10-1The individual is a Tibetan population, when the abundance of Prevotella in the individual's stool or intestinal contents is less than 1.43X 10-1Then the individual is Han nationality.
The step (1) comprises the following steps:
1) collecting the excrement or intestinal contents of an individual to be detected, and extracting the DNA of microorganisms in the excrement or the intestinal contents;
2) amplifying a target fragment;
3) sequencing;
4) and calculating the abundance of Prevotella.
The method for extracting the DNA of the microorganism in the excrement or intestinal contents in the step 1) is selected from the following steps: the CTAB method, the GITC method or the method using a commercial kit.
Preferably, the DNA of the microorganisms in the stool or intestinal contents is extracted using the CTAB method.
Specifically, collected excrement or intestinal contents are treated by CTAB, lysozyme and a lysis solution, then treated by phenol, chloroform and isoamylol to dissociate DNA and remove foreign proteins, the DNA is precipitated by isopropanol, and the DNA is purified by ethanol to obtain the DNA of microorganisms in the excrement or the intestinal contents.
More specifically, collecting the feces of the individual to be detected, sucking 500-: chloroform: isoamyl alcohol (20-30: 18-28: 1), reversing and mixing evenly, and centrifuging for 10-15min at 10000-12000 rpm. Taking the supernatant, adding chloroform: isoamyl alcohol (20-30: 1), reversing and mixing evenly, and centrifuging for 10-15min at 10000-. The supernatant was taken, added with isopropanol, shaken up and down and precipitated at-20 ℃. 10000-12000rpm for 10-15min, washing the precipitate with ethanol for 2-5 times, drying the precipitate, adding water to dissolve the precipitate, adding RNase A to digest RNA to obtain the DNA of the microorganism in the feces or intestinal contents.
And (2) amplifying the DNA obtained in the step (1) by using specific primers 515F and 806R with Barcode, wherein the sequence of the 515F is 5 '-GTGCCAGCMGCCGCGGTAA-3' (SEQ ID NO: 1) and 806R has a sequence of 5 '-GGACTACHVGGGTWTCTAAT-3' (SEQ ID NO: 2).
In the step 3), sequencing is carried out on the product obtained in the step (2) by using a high-throughput sequencing method.
And 4) clustering the data obtained by sequencing into OTUs (operational Taxonomic units) in the step 4), and calculating the abundance of the Prevotella after annotation analysis of species.
Specifically, in the step 4), the data obtained by sequencing in the step 3) is processed, effective data is clustered into OTUs (operational Taxomic units) by using Upearse software (Upearse v7.0.1001, http:// www.drive5.com/Uparse /), and species annotation analysis is performed on OTUs sequences by using a Mothur method and a SSURRNA database of SILVA (http:// www.arb-silva.de /), so that the relative abundance of Prevotella is represented by (Prevotella OTU value)/(all the genus OTU values detected by the detection sample).
The Prevotella includes Prevotella melanogenes, Prevotella intermedia, Prevotella anthropogonis, Prevotella denticola, Prevotella lodest, Prevotella melanogaster, Prevotella chevalis, Prevotella pallidum, Prevotella bucca, Prevotella oralis, Prevotella bikurina, Prevotella saccharicola and Prevotella gingivalis.
In a third aspect, the invention provides the use of a product for detecting the abundance of a microbial marker for identifying and/or distinguishing Tibetan and Han individuals on plateaus.
The product for detecting the abundance of the microbial marker comprises a reagent, an apparatus or a device for detecting the abundance of the microbial marker.
Preferably, the product for detecting the abundance of the microbial marker is a product for detecting the abundance of Prevotella.
The Prevotella includes Prevotella melanogenes, Prevotella intermedia, Prevotella anthropogonis, Prevotella denticola, Prevotella lodest, Prevotella melanogaster, Prevotella chevalis, Prevotella pallidum, Prevotella bucca, Prevotella oralis, Prevotella bikurina, Prevotella saccharicola and Prevotella gingivalis.
In a fourth aspect, the present invention provides a product for identifying and/or differentiating Tibetan and Han individuals on plateau, said product comprising a reagent, an apparatus or a device for detecting abundance of a microbial marker.
Preferably, the product contains a reagent, an apparatus or a device for detecting the abundance of Prevotella.
The Prevotella includes Prevotella melanogenes, Prevotella intermedia, Prevotella anthropogonis, Prevotella denticola, Prevotella lodest, Prevotella melanogaster, Prevotella chevalis, Prevotella pallidum, Prevotella bucca, Prevotella oralis, Prevotella bikurina, Prevotella saccharicola and Prevotella gingivalis.
The abundance of a microorganism in the present invention refers to the abundance of that microorganism in a population of microorganisms, for example, the abundance of that microorganism in a population of intestinal microorganisms, and can be expressed as the amount of that microorganism in that population.
Drawings
FIG. 1 is a graph showing the difference in relative abundance of Prevotella in the Hanzang gut group in a boxplot;
FIG. 2 is a graph showing ROC curves showing the relative abundance of Prevotella to differentially diagnose the sensitivity and specificity of Hanzang origin in plateau populations.
FIG. 3: is formed by the colony in the excrement of the Tibetan soldier group (Zang).
FIG. 4: colony composition in feces of Han group of soldiers (Han).
Detailed Description
Example 1 identification of subjects as Tibetan or Han Using the relative abundance of Prevotella in the feces of individuals
(1) Determining the abundance of said microbial marker in a fecal sample of said individual:
1) collecting the excrement of the individual to be detected, and extracting the DNA of microorganisms in the excrement:
collecting feces of an individual to be detected, sucking 1000ul CTAB lysate into a 2.0ml EP tube, adding lysozyme, adding about 500ul of sample into the lysate, carrying out water bath at 65 ℃, and reversing and mixing uniformly for several times during the period so as to fully crack the sample. The supernatant was centrifuged and phenol (pH 8.0) was added: chloroform: isoamyl alcohol (25: 24: 1), reverse mixing, and centrifuging at 12000rpm for 10 min. Taking the supernatant, adding chloroform: isoamyl alcohol (24: 1), reverse mixing, and centrifuging at 12000rpm for 10 min. The supernatant was aspirated into a 1.5mL centrifuge tube, isopropanol was added, shaken up and down, and precipitated at-20 ℃. Centrifuge at 12000rpm for 10 minutes and pour out the liquid, taking care not to pour out the pellet. The column was washed 2 times with 1ml of 75% ethanol, and the remaining small amount of liquid was collected by centrifugation again and then aspirated out with a pipette tip. And drying the clean bench or airing the clean bench at room temperature. Addition of ddH2O dissolving the DNA sample, adding RNase A1 ul to digest the RNA, and standing at 37 ℃ for 15 min. Then, the purity and concentration of the DNA are detected by agarose gel electrophoresis, an appropriate amount of sample DNA is taken out to a centrifuge tube, and the sample is diluted to 1 ng/mu l by using sterile water.
2) Amplification of the fragment of interest:
using the diluted genomic DNA as a template, specific primers with Barcode were selected according to the sequencing region 16S V3-V4:
515F：5’-GTGCCAGCMGCCGCGGTAA-3’ （SEQ ID NO：1），
806R：5’-GGACTACHVGGGTWTCTAAT-3’ （SEQ ID NO：2），
phusion High-Fidelity PCR Master Mix with GC Buffer from New England Biolabs company and High-efficiency High-Fidelity enzyme (TransFast Taq DNA Polymerase) to perform PCR, thereby ensuring the amplification efficiency and accuracy.
The PCR product is detected by electrophoresis by using agarose gel with 2 percent concentration; the PCR products were mixed in equal amounts according to the concentration of the PCR products, and after mixing well, the PCR products were purified by agarose gel electrophoresis using 1 XTAE 2%, and the target band was recovered by shearing. The product purification kit uses a recovery kit of GeneJET gel from Thermo Scientific company.
3) Sequencing:
construction of the Library is carried out by using Ion Plus Fragment Library Kit 48 rxns Library construction Kit of Thermofeisher company, and after the constructed Library is qualified by Qubit quantification and Library detection, on-machine sequencing is carried out by using Ion S5TMXL of Thermofeisher.
4) Calculating abundance of Prevotella:
processing sequencing data: cutadapt (V1.9.1, http:// cutapt. readthetadocs. io/en/stable /) is used for carrying out low-quality partial shearing on Reads, then each sample data is split from the obtained Reads according to Barcode, the Barcode and primer sequence are cut off for preliminary quality control to obtain original data, the Reads obtained after the treatment needs to be treated for removing a chimera sequence, the Reads sequence is compared with a species annotation database to detect the chimera sequence, and finally the chimera sequence is removed, so that the final effective data are obtained.
OTU clustering and species annotation: all effective data of all samples are clustered by using Upearse software (Upearse v7.0.1001, http:// www.drive5.com/Uparse /), sequences are clustered into OTUs (operational Taxonomic units) by default with 97% consistency, representative sequences of the OTUs are selected at the same time, and the sequences with the highest frequency of occurrence in the OTUs are selected as the representative sequences of the OTUs according to the algorithm principle. Species annotation is carried out on OTUS sequences, species annotation analysis is carried out by a Mothur method and an SSUrRNA database of SILVA (http:// www.arb-SILVA. de /) (the threshold value is set to be 0.8-1), taxonomic information is obtained, and the community composition of Han soldiers and Tibetan soldiers is counted at the genus level respectively (see figures 3 and 4). The relative abundance of Prevotella is expressed as (Prevotella OTU value)/(all the genus OTU values detected in the test sample).
(2) The abundance of Prevotella in the excrement of the individual to be detected is compared with 1.43 multiplied by 10-1By comparison, when the abundance of Prevotella in the feces or intestinal contents of an individual is greater than 1.43X 10-1When the individual is the Tibetan, the fecal or intestinal contents of the individualThe abundance of Prevotella in (A) is less than 1.43X 10-1Then the individual is Han nationality.
Example 2 feasibility test for identifying ethnic groups of subjects Using the relative abundance of Prevotella
The study population is as follows:
the subject is a Chinese service male soldier, the experimental group is 128 Tibetan male soldiers with altitude higher than 3500m, and the comparison group is 128 plain Han soldiers age-matched with the Tibetan soldiers. Strictly controlling two groups of people to perform the same mixed diet of Chinese troops, keeping the same training environment and training intensity at the altitude of 3500m, and stopping smoking and drinking for 3 months. Soldiers with chronic inflammatory disease, oral antibiotics, acute infection and gastrointestinal disease were excluded.
The method comprises the following steps:
(1) determining the abundance of said microbial marker in a fecal sample of said individual:
1) collecting the excrement of the individual to be detected, and extracting the DNA of microorganisms in the excrement:
collecting feces of an individual to be detected, sucking 1000ul CTAB lysate into a 2.0ml EP tube, adding lysozyme, adding about 500ul of sample into the lysate, carrying out water bath at 65 ℃, and reversing and mixing uniformly for several times during the period so as to fully crack the sample. The supernatant was centrifuged and phenol (pH 8.0) was added: chloroform: isoamyl alcohol (25: 24: 1), reverse mixing, and centrifuging at 12000rpm for 10 min. Taking the supernatant, adding chloroform: isoamyl alcohol (24: 1), reverse mixing, and centrifuging at 12000rpm for 10 min. The supernatant was aspirated into a 1.5mL centrifuge tube, isopropanol was added, shaken up and down, and precipitated at-20 ℃. Centrifuge at 12000rpm for 10 minutes and pour out the liquid, taking care not to pour out the pellet. The column was washed 2 times with 1ml of 75% ethanol, and the remaining small amount of liquid was collected by centrifugation again and then aspirated out with a pipette tip. And drying the clean bench or airing the clean bench at room temperature. Addition of ddH2O dissolving the DNA sample, adding RNase A1 ul to digest the RNA, and standing at 37 ℃ for 15 min. Then, the purity and concentration of the DNA are detected by agarose gel electrophoresis, an appropriate amount of sample DNA is taken out to a centrifuge tube, and the sample is diluted to 1 ng/mu l by using sterile water.
2) Amplification of the fragment of interest:
using the diluted genomic DNA as a template, specific primers with Barcode were selected according to the sequencing region 16S V3-V4:
515F：5’-GTGCCAGCMGCCGCGGTAA-3’（SEQ ID NO：1），
806R：5’-GGACTACHVGGGTWTCTAAT-3’（SEQ ID NO：2），
phusion High-Fidelity PCR Master Mix with GC Buffer from New England Biolabs, and High-efficiency High-Fidelity enzyme to ensure the amplification efficiency and accuracy.
The PCR product is detected by electrophoresis by using agarose gel with 2 percent concentration; the PCR products were mixed in equal amounts according to the concentration of the PCR products, and after mixing well, the PCR products were purified by agarose gel electrophoresis using 1 XTAE 2%, and the target band was recovered by shearing. The product purification kit uses a recovery kit of GeneJET gel from Thermo Scientific company.
3) Sequencing:
construction of the Library is carried out by using Ion Plus Fragment Library Kit 48 rxns Library construction Kit of Thermofeisher company, and after the constructed Library is qualified by Qubit quantification and Library detection, on-machine sequencing is carried out by using Ion S5TMXL of Thermofeisher.
4) Calculating abundance of Prevotella:
processing sequencing data: cutadapt (V1.9.1, http:// cutapt. readthetadocs. io/en/stable /) is used for carrying out low-quality partial shearing on Reads, then each sample data is split from the obtained Reads according to Barcode, the Barcode and primer sequence are cut off for preliminary quality control to obtain original data, the Reads obtained after the treatment needs to be treated for removing a chimera sequence, the Reads sequence is compared with a species annotation database to detect the chimera sequence, and finally the chimera sequence is removed, so that the final effective data are obtained.
OTU clustering and species annotation: all effective data of all samples are clustered by using Upearse software (Upearse v7.0.1001, http:// www.drive5.com/Uparse /), sequences are clustered into OTUs (operational Taxonomic units) by default with 97% consistency, representative sequences of the OTUs are selected at the same time, and the sequences with the highest frequency of occurrence in the OTUs are selected as the representative sequences of the OTUs according to the algorithm principle. Species annotation is carried out on OTUS sequences, species annotation analysis is carried out by a Mothur method and an SSUrRNA database of SILVA (http:// www.arb-SILVA. de /) (the threshold value is set to be 0.8-1), taxonomic information is obtained, and the community composition of Han soldiers and Tibetan soldiers is counted at the genus level respectively (see figures 3 and 4). The relative abundance of Prevotella is expressed as (Prevotella OTU value)/(all the genus OTU values detected in the test sample).
As a result:
FIG. 1 is a box diagram showing the difference in relative abundance of Prevotella in Hanzan intestinal group, as shown in FIG. 1, the relative abundance of Prevotella in plateau Han population is 2.93X 10-3The relative abundance of Prevotella in the population of Tibetan plateau was 3.56X 10-1The relative abundance of Prevotella in Tibetan population is obviously higher than that of Han population.
The above verification tests show that the relative abundance of Prevotella in the feces of an individual provided by the present invention can be used to identify the ethnicity of the individual.
Example 3 construction of ROC Curve comparative evaluation of the ability of the relative abundance of strains to discriminate plateau Han and Tibetan populations
The capacity of identifying plateau Han people and Tibetan people is judged by verifying through a receiver working curve (ROC) method and judging the relative abundance of Prevotella in excrement of a receiver. Comparison of differences because the samples were non-normally distributed, Mann-Whitney test was used. And drawing an ROC curve to evaluate the sensitivity and specificity of relative abundance of the bacteria to differential diagnosis of plateau Han population and Tibetan population, calculating a threshold value, wherein P is less than 0.05, having statistical significance, and performing statistical processing by adopting an SPSS22.0 software package.
The results are shown in FIG. 2, and the results in FIG. 2 show that the ROC curve shows that the AUC (area under ROC curve) value of the Hanzang source of the plateau population is 0.816 for the differential diagnosis of the relative abundance of Prevotella, which is used for identifying the plateau Han population and the Tibetan population, and the relative abundance of the Prevotella is 1.43 × 10-1Then, the maximum jotans index of 0.662, the sensitivity and the specificity of 0.895 and 0.767 respectively, the accuracy of 0.832 and the F1 score of 0.846 are obtained, which indicates that the plateau population source can be distinguished from Tibetan or Han when the relative abundance of Prevotella is more than 1.43 multiplied by 10 by detecting the relative abundance of Prevotella in a stool sample by using 16SrRNA sequencing-1Can be judged as Tibetan.
Sequence listing
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<120> use of Prevotella for identifying and/or differentiating individuals of different ethnic groups
<130> 1
<160> 2
<170> PatentIn version 3.5
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<213> Artificial Sequence (Artificial Sequence)
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Claims (5)
1. The application of a microbial marker in identifying and/or distinguishing Tibetan on plateau and Han individuals on plateau is characterized in that the microbial marker is Prevotella, the Prevotella comprises melanin-producing Prevotella, intermediate Prevotella, human Prevotella, Prevotella denticola, Prevotella lorella Lowense, Prevotella nigrescens, Prevotella margariepibacter asiaticus, Prevotella pallidum, Prevotella bivalens, Prevotella buccaldarius, Prevotella oralis, Prevotella bigelovii, Prevotella sacchari and Prevotella gingivalis, the plateau is above 3500m, wherein the relative abundance of the Prevotella is compared with a threshold value, and the threshold value is 1.43 x 10-1When the relative abundance of Prevotella in the feces or intestinal contents of an individual is greater than 1.43X 10-1The individual is a Tibetan individual on the plateau, when the relative abundance of Prevotella in the feces or intestinal contents of the individual is less than 1.43 x 10-1And if the individual is a Han nationality individual on the plateau, the relative abundance is represented by 'Prevotella OTU (operational Taxonomic Unit)' value/'all the bacteria OTU values detected by the detection sample'.
2. A method of identifying and/or differentiating individuals as tibetan on plateau or han on plateau, said method comprising the steps of:
(1) determining the relative abundance of Prevotella in the stool or intestinal contents of said individual, wherein said Prevotella comprises melanin-producing Prevotella, intermediate Prevotella, human Prevotella, Prevotella denticola, Prevotella lohde, Prevotella nigrescens, Prevotella chebrueckii, Prevotella pallida, Prevotella pallidum, Prevotella buccae, Prevotella oralis, Prevotella bifidus, Prevotella saccharolytica and Prevotella gingivalis;
(2) comparing the relative abundance of Prevotella to a threshold of 1.43X 10-1When the relative abundance of Prevotella in the feces or intestinal contents of an individual is greater than 1.43X 10-1The individual is a Tibetan individual on the plateau, when the relative abundance of Prevotella in the feces or intestinal contents of the individual is less than 1.43 x 10-1Then the individual is a Han individual on the plateau;
wherein the plateau is an altitude of 3500m or more, and the relative abundance is represented by "prevotella OTU (operational taxomic unit) value"/"all the bacterial OTU values detected by the detection sample".
3. The method of claim 2, wherein the step (1) comprises:
1) collecting the excrement or intestinal contents of an individual to be detected, and extracting the DNA of microorganisms in the excrement or the intestinal contents;
2) amplifying a target fragment;
3) sequencing;
4) the relative abundance of Prevotella was calculated.
4. Application of product for detecting relative abundance of microbial marker in identifying and/or distinguishing Tibetan on plateau and Han individual on plateau, wherein the microbial marker is Prevotella, the Prevotella comprises melanin-producing Prevotella, intermediate Prevotella, human Prevotella, Prevotella denticola, Prevotella lohdea, Prevotella melanogaster, Prevotella tanaka, Prevotella pallidum, Prevotella buccae, Prevotella oralis, Prevotella bidrenchi, Prevotella saccharolytica and Prevotella gingivalis, the plateau is above 3500m, wherein the relative abundance of Prevotella is compared with a threshold value, and the threshold value is 1.43X 10-1When the relative abundance of Prevotella in the feces or intestinal contents of an individual is greater than 1.43X 10-1The individual is a Tibetan individual on the plateau, when the relative abundance of Prevotella in the feces or intestinal contents of the individual is less than 1.43 x 10-1And if the individual is a Han nationality individual on the plateau, the relative abundance is represented by 'Prevotella OTU (operational Taxonomic Unit)' value/'all the bacteria OTU values detected by the detection sample'.
5. The use of the product for detecting the relative abundance of a biomarker for identifying and/or distinguishing Tibetan on plateau from Han nationality on plateau as claimed in claim 4, wherein the product for detecting the relative abundance of a biomarker comprises a reagent, an apparatus or a device for detecting the relative abundance of a biomarker.
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| CN101956006A (en) * | 2010-08-27 | 2011-01-26 | 公安部物证鉴定中心 | Method for obtaining race specific loci and race inference system and application thereof |
| CN106446599A (en) * | 2015-08-11 | 2017-02-22 | 中国科学院青岛生物能源与过程研究所 | Method for screening oral pathogenic biomarkers of infant caries |
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2019
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Patent Citations (2)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| CN101956006A (en) * | 2010-08-27 | 2011-01-26 | 公安部物证鉴定中心 | Method for obtaining race specific loci and race inference system and application thereof |
| CN106446599A (en) * | 2015-08-11 | 2017-02-22 | 中国科学院青岛生物能源与过程研究所 | Method for screening oral pathogenic biomarkers of infant caries |
Non-Patent Citations (1)
| Title |
|---|
| Comparative analyses of fecal microbiota in Tibetan and Chinese Han living at low or high altitude by barcoded 454 pyrosequencing;Long Li等;《Scientific RepoRts》;20151007;第5卷(第14682期);摘要，第4页第1段，第6页最后1段，第7页第4段 * |
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