CN109750039B - Plant touch response promoter and application thereof - Google Patents
Plant touch response promoter and application thereof Download PDFInfo
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- CN109750039B CN109750039B CN201910052428.3A CN201910052428A CN109750039B CN 109750039 B CN109750039 B CN 109750039B CN 201910052428 A CN201910052428 A CN 201910052428A CN 109750039 B CN109750039 B CN 109750039B
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Abstract
Description
技术领域technical field
本发明属于生物技术领域,具体涉及一种植物碰触响应启动子及其应用。The invention belongs to the field of biotechnology, in particular to a plant touch response promoter and its application.
背景技术Background technique
启动子是位于基因起始密码子(ATG)上游的一段DNA序列,能够与RNA聚合酶结合并启动基因的转录,相当于基因转录的“开关”。启动子主要包含两个区域:核心启动区和非核心启动区。核心启动区形成普遍性转录结构,通常由一些短的保守序列(如转录起始位点、TATA-box、CAAT-box等)组成。这些序列的结构特征决定着启动子同RNA聚合酶的识别、结合及起始转录过程。非核心启动区包括近端调控区和远端调控区,往往存在一些特异性的转录因子结合的位点,调控基因转录的时间和空间特异性。根据启动子的转录模式不同将其分为组成型、诱导型和组织特异性启动子三类。组成型启动子能在不同类型的细胞及细胞发育的不同阶段,持续高效地驱动基因转录,并且转录活性相对恒定,受组成型启动子驱动的基因往往被称作管家基因(housekeeping gene)。组织特异型启动子是仅在某些特定类型的细胞(组织)或细胞(组织)发育的某一特定阶段高效地转录,其含有决定启动子的特异性的顺式调控元件,要与该组织特异性存在的转录因子相结合,才表现出启动子活性,组织特异性启动子驱动的基因往往与该种类型的细胞(组织)功能密切相关。诱导型启动子则需要诱导信号刺激,才能启动基因的转录,诱导型启动子在植物中更为常见,它所驱动的基因通常在植物生长发育调节和不良环境应对过程中发挥重要作用。A promoter is a DNA sequence located upstream of the gene initiation codon (ATG), which can bind to RNA polymerase and initiate gene transcription, which is equivalent to a "switch" for gene transcription. The promoter mainly contains two regions: the core promoter region and the non-core promoter region. The core promoter region forms a universal transcription structure, usually composed of some short conserved sequences (such as transcription initiation site, TATA-box, CAAT-box, etc.). The structural features of these sequences determine the recognition and binding of the promoter to RNA polymerase and the initiation of transcription. The non-core promoter region includes the proximal regulatory region and the distal regulatory region, and there are often some specific transcription factor binding sites to regulate the temporal and spatial specificity of gene transcription. Promoters are classified into three categories: constitutive, inducible, and tissue-specific promoters according to their transcriptional patterns. Constitutive promoters can continuously and efficiently drive gene transcription in different types of cells and at different stages of cell development, and the transcriptional activity is relatively constant. Genes driven by constitutive promoters are often called housekeeping genes. Tissue-specific promoters are efficiently transcribed only in certain types of cells (tissues) or at a certain stage of cell (tissue) development, and contain cis-regulatory elements that determine the specificity of the promoter, which is related to the tissue. The promoter activity can be exhibited only when the specific transcription factor is combined, and the gene driven by the tissue-specific promoter is often closely related to the function of this type of cell (tissue). Inducible promoters require inducible signal stimulation to initiate gene transcription. Inducible promoters are more common in plants, and the genes they drive usually play an important role in the regulation of plant growth and development and in response to adverse environments.
植物在其生命周期中面临着许多复杂多变的环境因子,如维持植物正常生长发育的温度、光照和水分等基本条件变化,除此之外碰触(如重力、风吹、雨雪、障碍物的触碰)所引起的刺激也是外界环境中的一个重要信号,广泛影响着植物的生长发育过程。植物响应机械刺激进而在形态发育上发生改变的过程称为触发形态发生,其主要体现在机械刺激会使植物叶片面积减少,茎干的径向伸长受到抑制,从而形成矮小粗壮的植物。人们对植物响应机械刺激的兴趣由来已久,最为人熟知的如含羞草叶子的感触性合拢、藤蔓植物卷须的向触性卷曲等。然而,目前对于植物响应机械刺激的研究,主要体现在形态建成、发育模式和生理状态方面的研究,除了组织和器官水平的研究,植物的机械响应也表现在细胞和细胞器水平。然而,关于对植物如何响应并传递机械刺激信号,以及植物响应机械刺激的分子机制研究较少。Plants face many complex and changeable environmental factors in their life cycle, such as changes in basic conditions such as temperature, light, and water to maintain normal plant growth and development. The stimulation caused by the touch of objects) is also an important signal in the external environment, which widely affects the growth and development of plants. The process in which plants respond to mechanical stimuli and change their morphological development is called triggered morphogenesis, which is mainly reflected in the reduction of the leaf area of plants and the inhibition of the radial elongation of stems by mechanical stimulation, resulting in the formation of short and stout plants. There is a long-standing interest in plant responses to mechanical stimuli, the most well-known examples being the tactile folding of the leaves of Mimosa and the tactile curling of tendrils of vines. However, the current research on plant response to mechanical stimuli is mainly reflected in the research on morphogenesis, developmental patterns and physiological states. In addition to the research at the tissue and organ level, the mechanical response of plants is also manifested at the cell and organelle level. However, little research has been done on how plants respond to and transmit mechanical stimuli and the molecular mechanisms by which plants respond to mechanical stimuli.
荧光素酶(Luciferase)是自然界中能够产生生物荧光的酶的统称,它能够在生物体内催化荧光素(luciferin)或脂肪醛(firefly aldehyde)氧化发光。自然界存在的荧光素酶来自萤火虫、发光细菌、发光海星、发光节虫、发光鱼、发光甲虫等,其中最有代表性的是一种学名为Photinus pyralis的萤火虫体内的荧光素酶,该基因可编码550个氨基酸的荧光素酶蛋白,是一个61kDa的单体酶,无需表达后修饰,直接具有完全酶活。荧光素酶可以用基因工程的方法生成并已被用于不同实验。编码荧光素酶的基因序列已经鉴定,并且已广泛应用到生物的诸多领域,用于研究基因的调控和表达水平的检测。作为一种荧光标记物,编码荧光素酶的基因可以被合成并插入到生物体或转染到细胞中,用做标记目标蛋白,追踪蛋白的定位及动态过程。常见的为将编码荧光素酶的基因插入待研究基因的启动子下游,并在特定的时空条件下检测编码荧光素酶的基因的表达水平,以此研究目标蛋白的作用模式。荧光素酶标记具有很强的特异性,以酶和底物特异性作用而发光。另外,荧光素酶还具有灵敏度高和稳定性好的特点。因此,荧光素酶在生物学领域研究中具有重要的意义。Luciferase is a general term for enzymes that can produce bioluminescence in nature. It can catalyze the oxidation of luciferin or firefly aldehyde to emit light in vivo. The luciferase that exists in nature comes from fireflies, luminous bacteria, luminous starfish, luminous beetles, luminous fish, luminous beetles, etc. Among them, the most representative one is the luciferase in a firefly named Photinus pyralis. The 550-amino acid luciferase protein is a monomeric enzyme of 61kDa, which directly has complete enzymatic activity without post-expression modification. Luciferase can be genetically engineered and has been used in various experiments. The gene sequence encoding luciferase has been identified and has been widely used in many fields of biology to study the regulation of genes and the detection of expression levels. As a fluorescent marker, the gene encoding luciferase can be synthesized and inserted into organisms or transfected into cells, used to label target proteins, and track the localization and dynamic process of proteins. It is common to insert the gene encoding luciferase into the downstream of the promoter of the gene to be studied, and detect the expression level of the gene encoding luciferase under specific spatiotemporal conditions, so as to study the mode of action of the target protein. The luciferase label has strong specificity and emits light due to enzyme and substrate specificity. In addition, luciferase also has the characteristics of high sensitivity and good stability. Therefore, luciferase is of great significance in biological research.
发明内容SUMMARY OF THE INVENTION
本发明的目的是通过碰触(如机械压力)启动目的基因的表达。The purpose of the present invention is to initiate the expression of a gene of interest by touching (eg, mechanical pressure).
本发明首先保护一种特异DNA分子,可为如下(a1)或(a2)或(a3):The present invention first protects a specific DNA molecule, which can be as follows (a1) or (a2) or (a3):
(a1)序列表序列4所示的DNA分子;(a1) the DNA molecule shown in Sequence 4 of the Sequence Listing;
(a2)与(a1)限定的核苷酸序列具有75%或75%以上同一性,且具有启动子功能的DNA分子;(a2) A DNA molecule having 75% or more identity with the nucleotide sequence defined in (a1) and having a promoter function;
(a3)在严格条件下与(a1)或(a2)限定的核苷酸序列杂交,且具有启动子功能的DNA分子。(a3) A DNA molecule that hybridizes to the nucleotide sequence defined in (a1) or (a2) under stringent conditions and has a promoter function.
本领域普通技术人员可以很容易地采用已知的方法,例如定向进化和点突变的方法,对本发明的特异DNA分子的核苷酸序列进行突变。那些经过人工修饰的,具有与本发明提供的特异DNA分子的核苷酸序列75%或者更高同一性的核苷酸,只要具有启动子功能,均是衍生于本发明的核苷酸序列并且等同于本发明的序列。One of ordinary skill in the art can readily mutate the nucleotide sequence of the specific DNA molecule of the present invention using known methods, such as directed evolution and point mutation. Those artificially modified nucleotides with 75% or higher identity to the nucleotide sequence of the specific DNA molecule provided by the present invention, as long as they have a promoter function, are derived from the nucleotide sequence of the present invention and Equivalent to the sequences of the present invention.
这里使用的术语“同一性”指与天然核酸序列的序列相似性。“同一性”包括与本发明的特异DNA分子的核苷酸序列具有75%或更高,80%或更高,或85%或更高,或90%或更高,或95%或更高同一性的核苷酸序列。同一性可以用肉眼或计算机软件进行评价。使用计算机软件,两个或多个序列之间的同一性可以用百分比(%)表示,其可以用来评价相关序列之间的同一性。The term "identity" as used herein refers to sequence similarity to a native nucleic acid sequence. "Identity" includes 75% or higher, 80% or higher, or 85% or higher, or 90% or higher, or 95% or higher to the nucleotide sequence of a specific DNA molecule of the invention Nucleotide sequences of identity. Identity can be assessed with the naked eye or with computer software. Using computer software, the identity between two or more sequences can be expressed in percent (%), which can be used to assess the identity between related sequences.
含有上述任一所述特异DNA分子的表达盒也属于本发明的保护范围。An expression cassette containing any of the above-mentioned specific DNA molecules also belongs to the protection scope of the present invention.
所述表达盒(从5’至3’)可包括启动子区(由所述特异DNA分子组成)、转录起始区、目的基因区、转录终止区和任选的翻译终止区。所述启动子区和目的基因区对宿主细胞而言可为天然的/类似的,或者,所述启动子区和目的基因区相互之间可为天然的/类似的,或者,所述启动子区和/或目的基因区对宿主而言或者其相互之间为异源的。“异源的”指序列为源自外来物种的序列,或,如果来自相同物种,则通过刻意的人为干预在组分和/或基因组位点方面对天然形式进行了实质性修饰。任选含有的转录终止区可与转录起始区同源,与可操作地连接的目的基因区同源,与宿主同源;或;目的基因区、宿主为外源或异源。The expression cassette (from 5' to 3') may include a promoter region (consisting of the specific DNA molecule), a transcription initiation region, a gene of interest region, a transcription termination region and optionally a translation termination region. The promoter region and the target gene region can be natural/similar to the host cell, or the promoter region and the target gene region can be natural/similar to each other, or the promoter The regions and/or gene regions of interest are heterologous to the host or to each other. "Heterologous" refers to a sequence that is derived from a foreign species, or, if from the same species, substantially modified in composition and/or genomic locus from the native form by deliberate human intervention. The optionally included transcription termination region can be homologous to the transcription initiation region, homologous to the operably linked target gene region, and homologous to the host; or; the target gene region and host are foreign or heterologous.
所述表达盒还可包括5’引导序列。5’引导序列可增强翻译。The expression cassette may also include a 5' leader sequence. The 5' leader sequence enhances translation.
在制备表达盒时,可应用衔接头或联结子连接DNA片段、或、可涉及其它操作以提供适当的限制酶切位点、去除多余的DNA、去除限制酶切位点等。为达到这一目的,可进行体外突变、引物修复、限制性酶切、退火、重新替换,例如转换和颠换。In preparing the expression cassette, adaptors or linkers may be used to join DNA fragments, or, other manipulations may be involved to provide appropriate restriction sites, remove excess DNA, remove restriction sites, and the like. To this end, in vitro mutagenesis, primer repair, restriction enzyme digestion, annealing, re-substitutions such as transitions and transversions can be performed.
所述表达盒还可包括用于筛选已转化细胞的选择性标记基因。选择性标记基因可用于筛选已转化细胞或组织。标记基因包括编码抗生素抗性的基因。其它选择性标记包括表型标记例如荧光蛋白。以上列出的选择性标记不具有限制性。本发明可使用任何选择性标记基因。The expression cassette may also include a selectable marker gene for screening transformed cells. Selectable marker genes can be used to screen transformed cells or tissues. Marker genes include genes encoding antibiotic resistance. Other selectable markers include phenotypic markers such as fluorescent proteins. The selectable markers listed above are not limiting. Any selectable marker gene can be used in the present invention.
含有上述任一所述特异DNA分子的重组质粒也属于本发明的保护范围。Recombinant plasmids containing any of the above-mentioned specific DNA molecules also belong to the protection scope of the present invention.
所述重组质粒可为将上述任一所述特异DNA分子插入出发质粒,得到的重组质粒。所述重组质粒具体可为将上述任一所述特异DNA分子插入出发质粒的多克隆位点,得到的重组质粒。The recombinant plasmid can be a recombinant plasmid obtained by inserting any of the above-mentioned specific DNA molecules into the starting plasmid. Specifically, the recombinant plasmid can be a recombinant plasmid obtained by inserting any of the above-mentioned specific DNA molecules into the multiple cloning site of the starting plasmid.
所述重组质粒可包括上述任一所述含有所述特异DNA分子的表达盒。The recombinant plasmid may include any of the above-mentioned expression cassettes containing the specific DNA molecule.
所述重组质粒具体可为实施例提及的重组质粒pLUC-TCH3p。所述重组质粒pLUC-TCH3p为将重组质粒pLUC的限制性内切酶HindIII和BamHI之间的DNA小片段替换为序列表中序列4所示的DNA分子,得到的重组质粒。The recombinant plasmid may specifically be the recombinant plasmid pLUC-TCH3p mentioned in the Examples. The recombinant plasmid pLUC-TCH3p is a recombinant plasmid obtained by replacing the small DNA fragment between the restriction enzymes HindIII and BamHI of the recombinant plasmid pLUC with the DNA molecule shown in sequence 4 in the sequence table.
含有上述任一所述特异DNA分子的转基因细胞系也属于本发明的保护范围。Transgenic cell lines containing any of the above-mentioned specific DNA molecules also belong to the protection scope of the present invention.
所述转基因细胞系可为转基因植物细胞系。The transgenic cell line may be a transgenic plant cell line.
所述转基因植物细胞系均不包括繁殖材料。所述转基因植物理解为不仅包含将所述特异DNA分子转化受体植物得到的第一代转基因植物,也包括其子代。对于转基因植物,可以在该物种中繁殖所述特异DNA分子,也可用常规育种技术将所述特异DNA分子转移进入相同物种的其它品种,特别包括商业品种中。所述转基因植物包括种子、愈伤组织、完整植株和细胞。None of the transgenic plant cell lines included propagation material. The transgenic plant is understood to include not only the first generation of transgenic plants obtained by transforming the recipient plant with the specific DNA molecule, but also the progeny thereof. For transgenic plants, the specific DNA molecule can be propagated in that species, or conventional breeding techniques can be used to transfer the specific DNA molecule into other varieties of the same species, including in particular commercial varieties. The transgenic plants include seeds, callus, whole plants and cells.
在本发明的一个实施例中,所述植物可为十字花科植物。所述十字花科植物具体可为拟南芥。所述拟南芥具体可为野生型拟南芥(Arabidopsis thaliana)Columbia-0亚型。In one embodiment of the present invention, the plant may be a cruciferous plant. The cruciferous plant can specifically be Arabidopsis thaliana. The Arabidopsis thaliana may specifically be the wild-type Arabidopsis thaliana Columbia-0 subtype.
上述任一所述特异DNA分子作为启动子或碰触响应启动子的应用也属于本发明的保护范围。The application of any of the above-mentioned specific DNA molecules as a promoter or a touch-responsive promoter also falls within the protection scope of the present invention.
上述任一所述特异DNA分子、上述任一所述表达盒或上述任一所述重组质粒在启动目的基因的表达中的应用也属于本发明的保护范围。The application of any of the above-mentioned specific DNA molecules, any of the above-mentioned expression cassettes or any of the above-mentioned recombinant plasmids in initiating the expression of a target gene also belongs to the protection scope of the present invention.
本发明还保护表达目的基因的方法。The present invention also protects methods for expressing a gene of interest.
本发明所保护的表达目的基因的方法,具体可为方法一,所述方法一可为以上述任一所述特异DNA分子作为启动子或碰触响应启动子来启动目的基因的表达。The method for expressing a target gene protected by the present invention is specifically method one, and the method one can use any of the specific DNA molecules described above as a promoter or a touch-responsive promoter to initiate the expression of the target gene.
本发明所保护的表达目的基因的方法,具体可为方法二,所述方法二可包括如下步骤:将上述任一所述特异DNA分子插入到任何目的基因或增强子的上游,以此来启动目的基因的表达。The method for expressing a target gene protected by the present invention may specifically be a second method, and the second method may include the following steps: inserting any of the above-mentioned specific DNA molecules into the upstream of any target gene or enhancer to activate expression of the gene of interest.
本发明所保护的表达目的基因的方法,具体可为方法三,所述方法三可包括如下步骤:将目的基因插入上述任一所述表达盒中的所述特异DNA分子的下游,由所述特异DNA分子启动所述目的基因的表达。The method for expressing a target gene protected by the present invention may specifically be method three, and the method three may include the following steps: inserting the target gene into the downstream of the specific DNA molecule in any of the above-mentioned expression cassettes, and using the Specific DNA molecules initiate the expression of the gene of interest.
本发明所保护的表达目的基因的方法,具体可为方法四,所述方法四可包括如下步骤:将目的基因插入上述任一所述重组质粒中的所述特异DNA分子的下游,由所述特异DNA分子启动所述目的基因的表达。The method for expressing a target gene protected by the present invention is specifically method 4, and the method 4 may include the following steps: inserting the target gene into the downstream of the specific DNA molecule in any of the above-mentioned recombinant plasmids, and using the Specific DNA molecules initiate the expression of the gene of interest.
上述任一所述目的基因的表达具体可为碰触(如机械压力)时目的基因的表达。The expression of any of the above-mentioned target genes may specifically be the expression of the target gene when touched (eg, mechanical pressure).
上述任一所述特异DNA分子可以作为启动子(具体可为碰触响应启动子)可在植物中表达基因(如外源基因)。所述植物可为十字花科植物。所述十字花科植物具体可为拟南芥。所述拟南芥具体可为野生型拟南芥(Arabidopsis thaliana)Columbia-0亚型。Any of the above-mentioned specific DNA molecules can be used as a promoter (specifically, a touch-responsive promoter) to express genes (eg, exogenous genes) in plants. The plant may be a cruciferous plant. The cruciferous plant can specifically be Arabidopsis thaliana. The Arabidopsis thaliana may specifically be the wild-type Arabidopsis thaliana Columbia-0 subtype.
上述任一所述目的基因可为荧光素酶的编码基因。所述荧光素酶的氨基酸序列可如序列表中序列2所示。所述荧光素酶的编码基因可如序列表中序列1所示。Any of the above-mentioned gene of interest may be a gene encoding luciferase. The amino acid sequence of the luciferase can be shown as
上述任一所述碰触可为机械压力。在本发明的一个实施例中,所述机械压力可由在植物(具体可为拟南芥)表面覆盖一定厚度(如5mm)的石英砂形成。在本发明的另一个实施例中,所述机械压力可由在植物(具体可为拟南芥)表面覆盖一定厚度(如5mm)的玻璃板形成。覆盖时间可为20min以上(如30min)。Any of the above mentioned touching may be mechanical pressure. In one embodiment of the present invention, the mechanical pressure can be formed by covering the surface of plants (specifically, Arabidopsis) with quartz sand with a certain thickness (eg, 5 mm). In another embodiment of the present invention, the mechanical pressure can be formed by a glass plate covering a certain thickness (eg, 5 mm) on the surface of the plant (specifically, Arabidopsis thaliana). The covering time can be more than 20min (eg 30min).
实验证明,本发明提供的特异DNA分子可以在碰触(如机械压力)时启动目的基因(如荧光素酶的编码基因)的表达,说明该特异DNA分子是一个碰触响应启动子。本发明具有重要的应用价值。Experiments show that the specific DNA molecule provided by the present invention can initiate the expression of the target gene (such as the gene encoding luciferase) when touched (such as mechanical pressure), indicating that the specific DNA molecule is a touch-responsive promoter. The invention has important application value.
附图说明Description of drawings
图1为TCH1p和TCH3p驱动荧光素酶的发光检测结果。Figure 1 shows the luminescence detection results of TCH1p and TCH3p-driven luciferase.
图2为CaMV 35S启动子驱动荧光素酶的发光检测结果。Figure 2 shows the results of luminescence detection of luciferase driven by the
图3为野生型拟南芥碰触刺激前后TCH1基因和TCH3基因的转录水平的检测结果。Figure 3 shows the detection results of the transcription levels of TCH1 gene and TCH3 gene before and after touch stimulation in wild-type Arabidopsis thaliana.
具体实施方式Detailed ways
以下的实施例便于更好地理解本发明,但并不限定本发明。The following examples facilitate a better understanding of the present invention, but do not limit the present invention.
下述实施例中的实验方法,如无特殊说明,均为常规方法。The experimental methods in the following examples are conventional methods unless otherwise specified.
下述实施例中所用的试验材料,如无特殊说明,均为自常规生化试剂商店购买得到的。The test materials used in the following examples were purchased from conventional biochemical reagent stores unless otherwise specified.
以下实施例中的定量试验,均设置三次重复实验,结果取平均值。The quantitative tests in the following examples are all set to repeat the experiments three times, and the results are averaged.
野生型拟南芥(Arabidopsis thaliana)Columbia-0亚型记载于如下文献中:KimH,Hyun Y,Park J,Park M,Kim M,Kim H,Lee M,Moon J,Lee I,Kim J.A genetic linkbetween cold responses and flowering time through FVE in Arabidopsisthaliana.Nature Genetics.2004,36:167-171。野生型拟南芥(Arabidopsis thaliana)Columbia-0亚型在下文中简称野生型拟南芥或拟南芥。The wild-type Arabidopsis thaliana Columbia-0 subtype is described in: Kim H, Hyun Y, Park J, Park M, Kim M, Kim H, Lee M, Moon J, Lee I, Kim J. A genetic linkbetween cold responses and flowering time through FVE in Arabidopsisthaliana. Nature Genetics. 2004, 36:167-171. Wild-type Arabidopsis thaliana Columbia-0 subtype is hereinafter referred to as wild-type Arabidopsis or Arabidopsis thaliana.
下述实施例中,光暗交替培养(即光培养和暗培养交替)条件为:22±2℃;16h光照培养/8h黑暗培养;光照培养时的光照强度为80~100μE/m2/s。In the following examples, the conditions of light-dark alternate cultivation (ie, light and dark cultivation alternate) are: 22±2°C; 16h light cultivation/8h dark cultivation; the light intensity during light cultivation is 80-100 μE/m 2 /s .
下述实施例中,石英砂的砂粒直径均为1-2mm。In the following examples, the diameter of the sand grains of the quartz sand is 1-2 mm.
实施例1、拟南芥碰触响应基因的筛选Example 1. Screening of Arabidopsis touch-responsive genes
本发明的发明人采用RNA-seq方法检测拟南芥在碰触刺激后的差异表达基因,进而筛选获得拟南芥的碰触响应基因。具体步骤如下:The inventors of the present invention use the RNA-seq method to detect the differentially expressed genes of Arabidopsis thaliana after touch stimulation, and then screen to obtain the touch-responsive genes of Arabidopsis thaliana. Specific steps are as follows:
1、取拟南芥种子,用含0.05%(v/v)triton X-100的75%(v/v)乙醇水溶液灭菌15min,然后用灭菌水清洗3-5次。1. Take Arabidopsis thaliana seeds, sterilize with 75% (v/v) ethanol aqueous solution containing 0.05% (v/v) triton X-100 for 15 minutes, and then wash with sterilized water for 3-5 times.
2、完成步骤1后,将拟南芥种子播种于1/2MS固体培养基,4℃春化3d。2. After completing
3、将完成步骤2的1/2MS固体培养基置于培养箱,光暗交替培养5d,得到拟南芥幼苗。3. Place the 1/2 MS solid medium obtained in
将部分拟南芥幼苗(即未处理的拟南芥幼苗)(全株)用液氮快速冷冻,-80℃保存。Part of Arabidopsis thaliana seedlings (ie untreated Arabidopsis seedlings) (whole plants) were snap-frozen in liquid nitrogen and stored at -80°C.
4、完成步骤3后,向其余拟南芥幼苗表面覆盖(厚度为5mm)石英砂30min,得到机械刺激的拟南芥幼苗。去除机械刺激的拟南芥幼苗上的石英砂,然后将机械刺激的拟南芥幼苗(全株)用液氮快速冷冻,-80℃保存。4. After completing
5、提取未处理的拟南芥幼苗或机械刺激的拟南芥幼苗的总RNA,然后用偶联oligo(dT)的柱(安诺优达公司的产品)纯化分离含有poly(A)的mRNA。5. Extract total RNA from untreated Arabidopsis seedlings or mechanically stimulated Arabidopsis seedlings, and then purify and isolate poly(A)-containing mRNA with a column coupled with oligo(dT) (product of Annoroad Company). .
6、完成步骤5后,取所述含有poly(A)的mRNA,加入mRNA片段化缓冲液(安诺优达公司的产品),94℃处理2min,得到片段化的RNA片段。6. After completing
7、完成步骤6后,以所述片段化的RNA片段为模板,先采用随机引物反转录合成第一链cDNA;然后用DNA聚合酶I合成双链DNA,同时加入RNaseH消化RNA模板。反转录的cDNA产物用QiaQuick PCR纯化试剂盒(Qiagen公司的产品)回收纯化。最后将cDNA片段加上接头引物进行PCR扩增,用Illumina公司的HiSeq2500进行测序。7. After completing step 6, using the fragmented RNA fragments as templates, firstly use random primers to reverse-transcribe to synthesize first-strand cDNA; then use DNA polymerase I to synthesize double-stranded DNA, and add RNaseH to digest the RNA template at the same time. The reverse transcribed cDNA product was recovered and purified with QiaQuick PCR purification kit (product of Qiagen Company). Finally, the cDNA fragment was amplified by PCR with adapter primers, and sequenced by HiSeq2500 of Illumina.
8、完成步骤7后,对未处理的拟南芥幼苗或机械刺激的拟南芥幼苗进行RNA-seq分析,获得机械刺激处理后明显上调的差异表达基因(即拟南芥碰触响应基因)。8. After completing step 7, RNA-seq analysis was performed on untreated Arabidopsis seedlings or mechanically stimulated Arabidopsis seedlings to obtain differentially expressed genes (ie, Arabidopsis touch-responsive genes) that were significantly up-regulated after mechanical stimulation treatment. .
结果表明,TCH1基因(gene ID为AT5G37780)和TCH3基因(gene ID为AT2G41100)为拟南芥碰触响应基因。The results showed that TCH1 gene (gene ID: AT5G37780) and TCH3 gene (gene ID: AT2G41100) were Arabidopsis touch-responsive genes.
9、以未处理的拟南芥幼苗中拟南芥碰触响应基因(TCH1基因或TCH3基因)的表达量作为1,检测机械刺激的拟南芥幼苗中拟南芥碰触响应基因的相对表达量。9. Taking the expression level of the Arabidopsis touch-responsive gene (TCH1 gene or TCH3 gene) in the untreated Arabidopsis seedlings as 1, detect the relative expression of the Arabidopsis touch-responsive genes in the mechanically stimulated Arabidopsis thaliana seedlings quantity.
结果表明,与未处理的拟南芥幼苗相比,机械刺激的拟南芥幼苗中拟南芥碰触响应基因的表达量均显著提高。The results showed that the expression levels of Arabidopsis touch-responsive genes were significantly increased in mechanically stimulated Arabidopsis seedlings compared with untreated Arabidopsis seedlings.
实施例2、拟南芥碰触响应基因的启动子的克隆和发光检测Example 2. Cloning and luminescence detection of the promoter of the Arabidopsis touch-responsive gene
一、重组质粒的构建1. Construction of recombinant plasmids
1、重组质粒pLUC的构建1. Construction of recombinant plasmid pLUC
(1)以pGreenII 0800-LUC质粒(BioVector公司的产品)为模板,采用引物F:5’-CGGGATCCATGGAAGACGCCAAAAACATAAAG-3’(下划线为限制性内切酶BamHI的识别位点)和引物R:5’-GGGGTACCTTACAATTTGGACTTTCCGCC-3’(下划线为限制性内切酶KpnI的识别位点)组成的引物对进行PCR扩增,回收大小约1700bp的PCR扩增产物。(1) Using pGreenII 0800-LUC plasmid (product of BioVector Company) as template, primer F: 5'-CG GGATCC ATGGAAGACGCCAAAAACATAAAG-3' (underlined is the recognition site of restriction endonuclease BamHI) and primer R: 5 PCR amplification was performed with a primer pair consisting of '-GG GGTACC TTACAATTTGGACTTTCCGCC-3' (underlined as the recognition site of the restriction endonuclease KpnI), and a PCR amplification product with a size of about 1700 bp was recovered.
反应程序:94℃3min;94℃15秒,57℃30秒,68℃2min,35个循环;68℃10min。Reaction program: 94°C for 3 min; 94°C for 15 seconds, 57°C for 30 seconds, 68°C for 2 min, 35 cycles; 68°C for 10 min.
(2)完成步骤(1)后,将PCR扩增产物进行测序。(2) After step (1) is completed, the PCR amplification product is sequenced.
测序结果表明,PCR扩增产物中含有序列表中的序列1所示的DNA片段。序列表中的序列1所示的DNA片段编码序列表中序列2所示的蛋白质(即荧光素酶)。The sequencing results showed that the PCR amplification product contained the DNA fragment shown in SEQ ID NO: 1 in the sequence listing. The DNA fragment shown in
(3)完成步骤(1)后,取PCR扩增产物,用限制性内切酶BamHI和KpnI酶切,回收约1.7kb的酶切产物。(3) After step (1) is completed, the PCR amplification product is taken and digested with restriction endonucleases BamHI and KpnI, and the digested product of about 1.7 kb is recovered.
(4)取质粒pBI121(北京拜尔迪生物技术有限公司的产品,产品目录号为MP-091),用限制性内切酶SacI和EcoRI酶切,回收约277bp的DNA片段。该DNA片段即为Noster poly A终止序列。(4) Take plasmid pBI121 (product of Beijing Biotech Co., Ltd., product catalog number is MP-091), digest with restriction enzymes SacI and EcoRI, and recover a DNA fragment of about 277 bp. This DNA fragment is the Noster poly A termination sequence.
(5)取载体pUC19(北京百泰克生物技术有限公司的产品,产品目录号为DP7801),用限制性内切酶SacI和EcoRI酶切,回收约2686bp的载体骨架。(5) Take the vector pUC19 (product of Beijing Biotech Biotechnology Co., Ltd., product catalog number DP7801), digest it with restriction enzymes SacI and EcoRI, and recover the vector backbone of about 2686 bp.
(6)将步骤(4)得到的DNA片段和步骤(5)得到的载体骨架进行连接,得到重组质粒pUC19-Noster。(6) Connect the DNA fragment obtained in step (4) with the vector backbone obtained in step (5) to obtain a recombinant plasmid pUC19-Noster.
(7)取重组质粒pUC19-Noster,用限制性内切酶BamHI和KpnI酶切,回收约2950bp的酶切产物。(7) The recombinant plasmid pUC19-Noster was taken, digested with restriction enzymes BamHI and KpnI, and the digested product of about 2950 bp was recovered.
(8)将步骤(3)得到的酶切产物和步骤(7)得到的酶切产物进行连接,得到中间质粒。(8) linking the digested product obtained in step (3) and the digested product obtained in step (7) to obtain an intermediate plasmid.
(9)取中间质粒,用限制性内切酶BamHI和EcoRI酶切,回收约2kb的DNA片段。(9) The intermediate plasmid was taken, digested with restriction enzymes BamHI and EcoRI, and a DNA fragment of about 2 kb was recovered.
(10)取质粒pCAMBIA1301(Biovector Co.的产品),用限制性内切酶BamHI和EcoRI酶切,回收约10kb的载体骨架。(10) The plasmid pCAMBIA1301 (product of Biovector Co.) was taken and digested with restriction enzymes BamHI and EcoRI to recover a vector backbone of about 10 kb.
(11)将步骤(9)得到的DNA片段和步骤(10)得到的载体骨架进行连接,得到重组质粒pLUC。(11) Connect the DNA fragment obtained in step (9) with the vector backbone obtained in step (10) to obtain a recombinant plasmid pLUC.
2、拟南芥碰触响应基因的启动子的克隆2. Cloning of Arabidopsis touch-responsive gene promoters
(1)TCH1基因的启动子(以下简称为TCH1p)的克隆(1) Cloning of the promoter of the TCH1 gene (hereinafter abbreviated as TCH1p)
a、提取拟南芥的基因组DNA并以其作为模板,采用上游引物:5’-CCAAGCTTagcttattactctcttccttggttttg-3’(下划线为限制性内切酶HindIII的识别位点)和下游引物:5’-CGGGATCCagcttcttcgagaaatcgtctttc-3’(下划线为限制性内切酶BamHI的识别位点)组成的引物对进行PCR扩增,回收大小约1374bp的PCR扩增产物。该PCR扩增产物即含有TCH1p。a. Extract the genomic DNA of Arabidopsis thaliana and use it as a template, using upstream primer: 5'-CC AAGCTT agcttattactctcttccttggttttg-3' (underlined is the recognition site of restriction endonuclease HindIII) and downstream primer: 5'-CG A primer pair consisting of GGATCC agcttcttcgagaaatcgtctttc-3' (underlined is the recognition site of the restriction endonuclease BamHI) was used for PCR amplification, and the PCR amplification product with a size of about 1374 bp was recovered. The PCR amplification product contains TCH1p.
反应体系为30μL,由0.6μL KOD(浓度为5U/μL)(KOD为TOYOBO公司的产品)、3μL10×buffer(10×buffer为KOD的组件)、3μL dNTPs(dATP、dTTP、dGTP和dCTP的浓度均为2.0mM)、2.4μL MgSO4溶液(浓度为25mM)、0.9μL上游引物(浓度为10μM)、0.9μL下游引物(浓度为10μM)、3μL拟南芥的基因组DNA和16.2μLddH2O组成。The reaction system is 30 μL, consisting of 0.6 μL KOD (concentration of 5U/μL) (KOD is a product of TOYOBO Company), 3 μL 10×buffer (10×buffer is a component of KOD), 3 μL dNTPs (concentrations of dATP, dTTP, dGTP and dCTP) 2.0 mM), 2.4 μL MgSO4 solution (25 mM concentration), 0.9 μL upstream primer (10 μM concentration), 0.9 μL downstream primer (10 μM concentration), 3 μL Arabidopsis genomic DNA and 16.2 μL ddH 2 O.
反应程序:94℃2min;94℃15秒,56℃30秒,68℃2min,35个循环;68℃10min。Reaction program: 94°C for 2 min; 94°C for 15 seconds, 56°C for 30 seconds, 68°C for 2 min, 35 cycles; 68°C for 10 min.
b、完成步骤a后,取所述PCR扩增产物,测序。b. After step a is completed, the PCR amplification product is taken and sequenced.
测序结果表明,TCH1p的核苷酸序列如序列表中序列3所示。The sequencing results show that the nucleotide sequence of TCH1p is shown in
(2)TCH3基因的启动子(以下简称为TCH3p)的克隆(2) Cloning of the promoter of the TCH3 gene (hereinafter abbreviated as TCH3p)
a、提取拟南芥的基因组DNA并以其作为模板,采用上游引物:5’-CCAAGCTTCATTAGGGTCTGGCTGGTATG-3’(下划线为限制性内切酶HindIII的识别位点)和下游引物:5’-CGGGATCCACCCGAATTATTTGAAATGACG-3’(下划线为限制性内切酶BamHI的识别位点)组成的引物对进行PCR扩增,回收大小约1400bp的PCR扩增产物。该PCR扩增产物即含有TCH3p。a. Extract the genomic DNA of Arabidopsis thaliana and use it as a template, using the upstream primer: 5'-CC AAGCTT CATTAGGGTCTGGCTTGTATG-3' (underlined is the recognition site of the restriction endonuclease HindIII) and the downstream primer: 5'-CG PCR amplification was performed with a primer pair consisting of GGATCC ACCCGAATTATTTGAAATGACG-3' (underlined as the recognition site of the restriction endonuclease BamHI), and a PCR amplification product with a size of about 1400 bp was recovered. The PCR amplification product contains TCH3p.
反应体系同步骤(1)中a的反应体系。The reaction system is the same as the reaction system of a in step (1).
反应程序同步骤(1)中a的反应程序。The reaction procedure is the same as the reaction procedure of a in step (1).
b、完成步骤a后,取所述PCR扩增产物,测序。b. After step a is completed, the PCR amplification product is taken and sequenced.
测序结果表明,TCH3p的核苷酸序列如序列表中序列4所示。The sequencing results show that the nucleotide sequence of TCH3p is shown in sequence 4 in the sequence listing.
3、CaMV 35S启动子(以下简称为35Sp)的克隆3. Cloning of
a、以pGreenII 0800-LUC质粒为模板,采用上游引物:5’-CCAAGCTTTGAGACTTTTCAACAAAGGGTAATTTC-3’(下划线为限制性内切酶HindIII的识别位点)和下游引物:5’-CGGGA TCCTGTCCTCTCCAAATGAAATGAACTTC-3’(下划线为限制性内切酶BamHI的识别位点)组成的引物对进行PCR扩增,回收大小约346bp的PCR扩增产物。该PCR扩增产物即含有35Sp。a. Using the pGreenII 0800-LUC plasmid as the template, the upstream primer: 5'-CC AAGCTT TGAGACTTTTCAACAAAGGGTAATTTC-3' (underlined is the recognition site of the restriction endonuclease HindIII) and the downstream primer: 5'-CG GGA TCC TGTCCTCTCCAAATGAAATGAACTTC- The primer pair consisting of 3' (underlined is the recognition site of the restriction endonuclease BamHI) was PCR amplified, and the PCR amplification product with a size of about 346 bp was recovered. The PCR amplification product contains 35Sp.
反应体系同步骤(1)中a的反应体系。The reaction system is the same as the reaction system of a in step (1).
反应程序同步骤(1)中a的反应程序。The reaction procedure is the same as the reaction procedure of a in step (1).
b、完成步骤a后,取所述PCR扩增产物,测序。b. After step a is completed, the PCR amplification product is taken and sequenced.
测序结果表明,35Sp的核苷酸序列如序列表中序列5所示。The sequencing results show that the nucleotide sequence of 35Sp is shown in
4、重组质粒pLUC-TCH1p、重组质粒pLUC-TCH3p和重组质粒pLUC-35Sp的构建4. Construction of recombinant plasmid pLUC-TCH1p, recombinant plasmid pLUC-TCH3p and recombinant plasmid pLUC-35Sp
(1)重组质粒pLUC-TCH1p的构建(1) Construction of recombinant plasmid pLUC-TCH1p
(1-1)取步骤1构建的重组质粒pLUC,用限制性内切酶HindIII和BamHI酶切,回收约10kb的载体骨架。(1-1) Take the recombinant plasmid pLUC constructed in
(1-2)取步骤2中(1)扩增的PCR扩增产物,用限制性内切酶HindIII和BamHI酶切,回收约1374bp的酶切片段。(1-2) Take the PCR amplification product amplified in step 2 (1), digest with restriction endonucleases HindIII and BamHI, and recover a digested fragment of about 1374 bp.
(1-3)将步骤(1-1)得到的载体骨架和步骤(1-2)得到的酶切片段进行连接,得到重组质粒pLUC-TCH1p。(1-3) Connect the vector backbone obtained in step (1-1) with the restriction fragment obtained in step (1-2) to obtain a recombinant plasmid pLUC-TCH1p.
将重组质粒pLUC-TCH1p进行测序。根据测序结果,对重组质粒pLUC-TCH1p进行结构描述如下:将重组质粒pLUC的限制性内切酶HindIII和BamHI之间的DNA小片段替换为序列表中序列3所示的DNA分子,得到的重组质粒。重组质粒pLUC-TCH1p中,由TCH1p启动荧光素酶的表达。The recombinant plasmid pLUC-TCH1p was sequenced. According to the sequencing results, the structure of the recombinant plasmid pLUC-TCH1p is described as follows: the small DNA fragment between the restriction enzymes HindIII and BamHI of the recombinant plasmid pLUC is replaced with the DNA molecule shown in
(2)重组质粒pLUC-TCH3p的构建(2) Construction of recombinant plasmid pLUC-TCH3p
按照步骤(1)的方法,将步骤(1-2)中“步骤2中(1)扩增的PCR扩增产物”替换为“步骤2中(2)扩增的PCR扩增产物”,其它步骤均不变,得到重组质粒pLUC-TCH3p。According to the method of step (1), in step (1-2), replace "PCR amplification product amplified in (1) in
将重组质粒pLUC-TCH3p进行测序。根据测序结果,对重组质粒pLUC-TCH3p进行结构描述如下:将重组质粒pLUC的限制性内切酶HindIII和BamHI之间的DNA小片段替换为序列表中序列4所示的DNA分子,得到的重组质粒。重组质粒pLUC-TCH3p中,由TCH3p启动荧光素酶的表达。The recombinant plasmid pLUC-TCH3p was sequenced. According to the sequencing results, the structure of the recombinant plasmid pLUC-TCH3p is described as follows: the small DNA fragment between the restriction enzymes HindIII and BamHI of the recombinant plasmid pLUC is replaced with the DNA molecule shown in sequence 4 in the sequence table, and the resulting recombinant plasmid. In the recombinant plasmid pLUC-TCH3p, the expression of luciferase is initiated by TCH3p.
(3)重组质粒pLUC-35Sp的构建(3) Construction of recombinant plasmid pLUC-35Sp
按照步骤(1)的方法,将步骤(1-2)中“步骤2中(1)扩增的PCR扩增产物”替换为“步骤3扩增的PCR扩增产物”,其它步骤均不变,得到重组质粒pLUC-35Sp。According to the method of step (1), in step (1-2), replace "PCR amplification product amplified in step 2 (1)" with "PCR amplification product amplified in
将重组质粒pLUC-35Sp进行测序。根据测序结果,对重组质粒pLUC-35Sp进行结构描述如下:将重组质粒pLUC的限制性内切酶HindIII和BamHI之间的DNA小片段替换为序列表中序列5所示的DNA分子,得到的重组质粒。重组质粒pLUC-35Sp中,由35Sp启动荧光素酶的表达。The recombinant plasmid pLUC-35Sp was sequenced. According to the sequencing results, the structure of the recombinant plasmid pLUC-35Sp is described as follows: the small DNA fragment between the restriction enzymes HindIII and BamHI of the recombinant plasmid pLUC is replaced with the DNA molecule shown in
二、重组农杆菌的获得Second, the acquisition of recombinant Agrobacterium
将重组质粒pLUC-TCH1p导入根癌农杆菌GV3101,得到重组农杆菌,命名为GV3101/pLUC-TCH1p。The recombinant plasmid pLUC-TCH1p was introduced into Agrobacterium tumefaciens GV3101 to obtain a recombinant Agrobacterium, which was named GV3101/pLUC-TCH1p.
将重组质粒pLUC-TCH3p导入根癌农杆菌GV3101,得到重组农杆菌,命名为GV3101/pLUC-TCH3p。The recombinant plasmid pLUC-TCH3p was introduced into Agrobacterium tumefaciens GV3101 to obtain a recombinant Agrobacterium, which was named GV3101/pLUC-TCH3p.
将重组质粒pLUC-35Sp导入根癌农杆菌GV3101,得到重组农杆菌,命名为GV3101/pLUC-35Sp。The recombinant plasmid pLUC-35Sp was introduced into Agrobacterium tumefaciens GV3101 to obtain a recombinant Agrobacterium, which was named GV3101/pLUC-35Sp.
三、转基因拟南芥的获得Third, the acquisition of transgenic Arabidopsis
1、采用拟南芥花序浸花转化法(记载于如下文献中Clough,S.J.,and Bent,A.F..Floraldip:asimplified method for Agrobacterium-mediated transformationof Arabidopsis thaliana.Plant J.(1998)16,735-743.),将GV3101/pLUC-TCH1p转至野生型拟南芥中,获得T1代转TCH1p拟南芥种子。1. Adopt the Arabidopsis thaliana inflorescence soaking transformation method (described in the following documents Clough, SJ, and Bent, AF. Floraldip: asmplified method for Agrobacterium-mediated transformation of Arabidopsis thaliana. Plant J. (1998) 16, 735-743. ), GV3101/pLUC-TCH1p was transfected into wild-type Arabidopsis thaliana to obtain T 1 generation transgenic TCH1p Arabidopsis thaliana seeds.
2、将步骤1获得的T1代转TCH1p拟南芥种子播种于含有30mg/L的潮霉素的1/2MS培养基上,能够正常生长的拟南芥(抗性苗)即为T1代转TCH1p阳性苗,T1代转TCH1p阳性苗收到的种子即为T2代转TCH1p拟南芥种子。2. Sow the TCH1p transgenic Arabidopsis seeds obtained in step 1 on the 1/2 MS medium containing 30 mg/L hygromycin, and the Arabidopsis that can grow normally (resistant seedlings) is T1 The seeds received from the TCH1p-positive seedlings of the T 1 generation and the TCH1p-positive seedlings of the
3、将步骤2筛选出的不同株系的T2代转TCH1p拟南芥种子播种于含有30mg/L的潮霉素的1/2MS培养基上进行筛选,如果某株系中能够正常生长的拟南芥(抗性苗)的数目与不能够正常生长的拟南芥(非抗性苗)的数目比例为3:1,则该株系为TCH1p插入一个拷贝的株系,该株系中的抗性苗收到的种子即为T3代转TCH1p拟南芥种子。3. Sow the TCH1p Arabidopsis thaliana seeds from different strains screened in step 2 on 1/2MS medium containing 30 mg/L hygromycin for screening. The ratio of the number of Arabidopsis thaliana (resistant seedlings) to the number of Arabidopsis thaliana that cannot grow normally (non-resistant seedlings) is 3:1, then this line is a line with one copy of TCH1p inserted. The seeds received by the resistant seedlings are the T 3 generation transgenic TCH1p Arabidopsis seeds.
4、将步骤3筛选出的T3代转TCH1p拟南芥种子再次播种于含有30mg/L的潮霉素的1/2MS培养基上进行筛选,均为抗性苗的即为T3代纯合转TCH1p拟南芥。将其中2个T3代纯合转TCH1p拟南芥株系分别命名为TCH1p-1和TCH1p-2,并进行后续实验。4. The T 3 generation transgenic Arabidopsis thaliana seeds screened in
按照上述方法,将GV3101/pLUC-TCH1p替换为GV3101/pLUC-TCH3p,其它步骤均相同,得到T3代纯合转TCH3p拟南芥。将其中2个T3代纯合转TCH3p拟南芥株系分别命名为TCH3p-1和TCH3p-2,并进行后续实验。According to the above method, GV3101/pLUC-TCH1p was replaced with GV3101/pLUC-TCH3p, and other steps were the same to obtain T 3 generation homozygous trans-TCH3p Arabidopsis thaliana. Two of the T 3 generation homozygous transgenic TCH3p Arabidopsis lines were named TCH3p-1 and TCH3p-2, respectively, and subsequent experiments were carried out.
按照上述方法,将GV3101/pLUC-TCH1p替换为GV3101/pLUC-35Sp,其它步骤均相同,得到T3代纯合转35Sp拟南芥。将其中1个T3代纯合转35Sp拟南芥株系命名为35S:LUC,并进行后续实验。According to the above method, GV3101/pLUC-TCH1p was replaced by GV3101/pLUC-35Sp, and other steps were the same to obtain T 3 generation homozygous trans-35Sp Arabidopsis. One of the T 3 generation homozygous transgenic 35Sp Arabidopsis lines was named 35S:LUC, and follow-up experiments were carried out.
四、发光检测4. Luminescence detection
D-Luciferin母液:将1g D-Luciferin粉末(MW=318.42g/mol)溶于62.8mL水中,得到浓度为50mM的D-Luciferin母液,-80℃分装避光保存。D-Luciferin stock solution: Dissolve 1 g of D-Luciferin powder (MW=318.42 g/mol) in 62.8 mL of water to obtain D-Luciferin stock solution with a concentration of 50 mM, which is stored in aliquots at -80°C and protected from light.
D-Luciferin工作液:用水稀释D-Luciferin母液至浓度为1mM。D-Luciferin working solution: Dilute D-Luciferin stock solution with water to a concentration of 1 mM.
待测拟南芥种子为TCH1p-1的T3代种子、TCH1p-2的T3代种子、TCH3p-1的T3代种子、TCH3p-2的T3代种子、35S:LUC的T3代种子或野生型拟南芥种子。The Arabidopsis seeds to be tested are the
1、取待测拟南芥种子,用含0.05%(v/v)triton X-100的75%(v/v)乙醇水溶液灭菌15min,然后用灭菌水清洗3-5次。1. Take the Arabidopsis thaliana seeds to be tested, sterilize them with a 75% (v/v) ethanol aqueous solution containing 0.05% (v/v) triton X-100 for 15 minutes, and then wash with sterilized water for 3-5 times.
2、完成步骤1后,将待测拟南芥种子播种于1/2MS固体培养基,4℃春化3d。2. After completing
3、将完成步骤2的1/2MS固体培养基置于培养箱,光暗交替培养5d,得到待测拟南芥幼苗。3. Place the 1/2 MS solid medium obtained in
4、完成步骤3后,取所述待测拟南芥幼苗,用D-Luciferin工作液喷施,然后静置处理24h,用植物活体成像仪拍照(Berthold LB985)。4. After completing
5、完成步骤4后,部分待测拟南芥幼苗的表面覆盖玻璃板(厚度为5mm),30min后去掉玻璃板,用植物活体成像仪拍照(Berthold LB985)。5. After completing step 4, the surface of part of the Arabidopsis thaliana seedlings to be tested was covered with a glass plate (thickness of 5 mm). After 30 minutes, the glass plate was removed and photographed with a plant in vivo imager (Berthold LB985).
6、完成步骤4后,部分待测拟南芥幼苗不做任何处理,30min后用植物活体成像仪拍照(Berthold LB985)。作为对照。6. After completing step 4, some of the Arabidopsis thaliana seedlings to be tested were not treated, and were photographed with a plant in vivo imager (Berthold LB985) 30 minutes later. as comparison.
部分实验结果见图1(A为对照,其中左上的1#为TCH1p-1的T3代种子,右上的1#为TCH1p-2的T3代种子,左下的2#为TCH3p-1的T3代种子,右下的2#为TCH3p-2的T3代种子;B为覆盖玻璃板处理30min,其中左上的1#为TCH1p-1的T3代种子,右上的1#为TCH1p-2的T3代种子,左下的2#为TCH3p-1的T3代种子,右下的2#为TCH3p-2的T3代种子)和图2(左图为对照,右图为覆盖玻璃板处理30min,Col为野生型拟南芥的种子,35S:LUC为35S:LUC的T3代种子)。结果表明,碰触刺激前(即未覆盖玻璃板),TCH1p-1、TCH1p-2、TCH3p-1和TCH3p-2基本没有荧光;碰触刺激(覆盖玻璃板处理30min)后,TCH1p-1和TCH1p-2的荧光强度均较弱,TCH3p-1和TCH3p-2的荧光强度则较强;碰触刺激前和碰触刺激后,35S:LUC的荧光强度均较强且无显著变化;碰触刺激前和碰触刺激后,野生型拟南芥均无荧光信号。Part of the experimental results are shown in Figure 1 (A is the control, in which the 1# in the upper left is the T 3 generation seed of TCH1p-1, the 1# in the upper right is the T 3 generation seed of TCH1p-2, and the 2# in the lower left is the
由此可见,TCH1p和TCH3p均能够响应碰触刺激(如机械压力)。在碰触刺激(如机械压力)下,TCH3p和TCH1p均可以驱动荧光素酶产生荧光。Thus, both TCH1p and TCH3p can respond to touch stimuli (eg, mechanical pressure). Both TCH3p and TCH1p can drive luciferase to produce fluorescence under touch stimuli such as mechanical pressure.
五、检测TCH1基因和TCH3基因的转录水平5. Detection of transcription levels of TCH1 and TCH3 genes
待测拟南芥幼苗为完成步骤四中6中表面未覆盖玻璃板的野生型拟南芥幼苗或完成步骤四中5中表面覆盖玻璃板处理的野生型拟南芥幼苗。The Arabidopsis thaliana seedling to be tested is the wild-type Arabidopsis seedling whose surface is not covered with glass plate in step 6 of step 4 or the wild-type Arabidopsis thaliana seedling whose surface is covered with glass plate in
1、取待测拟南芥幼苗,采用植物总RNA试剂盒(SIGMA-ALDRICH公司的产品)提取总RNA,得到待测拟南芥总RNA。1. Take the Arabidopsis thaliana seedling to be tested, and extract the total RNA by using a plant total RNA kit (product of SIGMA-ALDRICH company) to obtain the total RNA of the Arabidopsis thaliana to be tested.
2、取待测拟南芥总RNA,参照RT-PCR试剂盒(天根生化科技(北京)有限公司的产品)说明书的操作步骤,合成待测拟南芥的cDNA。2. Take the total RNA of the Arabidopsis to be tested, and synthesize the cDNA of the Arabidopsis to be tested by referring to the operation steps of the RT-PCR kit (product of Tiangen Biochemical Technology (Beijing) Co., Ltd.).
(1)取2μg待测拟南芥总RNA,加入2μL 5×gDNA Buffer,然后用RNase-Free ddH2O补齐至10μL,混匀短暂离心后,42℃静置3min。(1) Take 2 μg of total RNA of Arabidopsis to be tested, add 2 μL of 5×gDNA Buffer, then make up to 10 μL with RNase-Free ddH 2 O, mix well, centrifuge briefly, and let stand at 42°C for 3 min.
(2)取完成步骤(1)的体系,加入10μL反转录混合物(由2μL 10×King RT Buffer、1μLFastKing RT Enzyme Mix、2μL FQ-RT Primer Mix和RNase-Free ddH2O组成),混匀;先42℃孵育15min,然后95℃孵育3min后置于冰上,得到待测拟南芥的cDNA。(2) Take the system that has completed step (1), add 10 μL of reverse transcription mixture (consisting of 2 μL 10×King RT Buffer, 1 μL FastKing RT Enzyme Mix, 2 μL FQ-RT Primer Mix and RNase-Free ddH2O), mix well; Incubate at 42°C for 15 minutes, then at 95°C for 3 minutes and place on ice to obtain the cDNA of Arabidopsis to be tested.
5×gDNA Buffer、RNase-Free ddH2O、10×King RT Buffer、FastKing RT EnzymeMix和FQ-RT Primer Mix均为RT-PCR试剂盒中的组件。5×gDNA Buffer, RNase-Free ddH 2 O, 10×King RT Buffer, FastKing RT EnzymeMix and FQ-RT Primer Mix are all components of RT-PCR kit.
3、完成步骤2后,采用TB GreenTMFast qPCR Mix试剂盒(Takara公司的产品)进行Real Time PCR(qPCR)检测。3. After completing
(1)取待测拟南芥的cDNA,用ddH2O稀释20倍,得到模板溶液。(1) Take the cDNA of Arabidopsis to be tested and dilute it 20 times with ddH 2 O to obtain a template solution.
(2)配制反应体系。反应体系为20μL,由5μL模板溶液、10μL TB Green Fast qPCRMix(2×)、0.8μL上游引物(浓度为10μM)、0.8μL下游引物(浓度为10μM)、0.4μL ROXReference Dye(50×)和ddH2O组成。(2) Prepare a reaction system. The reaction system was 20 μL, consisting of 5 μL template solution, 10 μL TB Green Fast qPCRMix (2×), 0.8 μL upstream primer (10 μM concentration), 0.8 μL downstream primer (10 μM concentration), 0.4 μL ROXReference Dye (50×) and ddH 2 O composition.
TB Green Fast qPCR Mix(2×)和ROX Reference Dye(50×)均为TB GreenTMFastqPCR Mix试剂盒中的组件。TB Green Fast qPCR Mix (2×) and ROX Reference Dye (50×) are both components in the TB Green ™ Fast qPCR Mix kit.
检测TCH1基因的上游引物的核苷酸序列为5’-CCCGAGTTCCTGAACCTGAT-3’,下游引物的核苷酸序列为5’-CAGCCTCACGGATCATCTCT-3’。The nucleotide sequence of the upstream primer for detecting the TCH1 gene is 5'-CCCGAGTTCCTGAACCTGAT-3', and the nucleotide sequence of the downstream primer is 5'-CAGCCTCACGGATCATCTCT-3'.
检测TCH3基因的上游引物的核苷酸序列为5’-ATGGTGACGGAACCATCAGT-3’,下游引物的核苷酸序列为5’-CGCTATGTCCCTCTCCCAAT-3’。The nucleotide sequence of the upstream primer for detecting the TCH3 gene is 5'-ATGGTGACGGAACCATCAGT-3', and the nucleotide sequence of the downstream primer is 5'-CGCTATGTCCCTCTCCCAAT-3'.
(3)完成步骤(2)后,取所述反应体系,进行Real-time PCR检测。(3) After completing step (2), take the reaction system and carry out Real-time PCR detection.
反应程序为:95℃20s;95℃3s,60℃30s,40个循环;95℃15s;60℃1min;95℃15s;60℃15s。The reaction program was: 95°C for 20s; 95°C for 3s, 60°C for 30s, 40 cycles; 95°C for 15s; 60°C for 1 min; 95°C for 15s; 60°C for 15s.
Real-time PCR检测结果见图3(0h为表面未覆盖玻璃板,0.5h为表面覆盖玻璃板30min)。结果表明,碰触刺激前(即未覆盖玻璃板),以TCH1基因和TCH3基因的表达量为1;在碰触刺激后,TCH1基因和TCH3基因的表达量显著上调(TCH1基因的表达量上调2倍,TCH3基因的表达量上调31倍)。由此可见,TCH1基因和TCH3基因对碰触刺激(如机械压力)均有明显的响应,进而说明TCH1基因的启动子和TCH3基因的启动子对碰触刺激(如机械压力)均有明显的响应。The real-time PCR detection results are shown in Figure 3 (0h means the surface is not covered with a glass plate, and 0.5h means the surface is covered with a glass plate for 30 minutes). The results showed that before the touch stimulation (ie, the glass plate was not covered), the expression levels of TCH1 and TCH3 genes were taken as 1; 2 times, the expression of TCH3 gene was up-regulated 31 times). It can be seen that both the TCH1 gene and the TCH3 gene have obvious responses to touch stimuli (such as mechanical pressure), which further indicates that both the TCH1 gene promoter and the TCH3 gene promoter have obvious responses to touch stimuli (such as mechanical pressure). response.
<110> 北京大学<110> Peking University
<120> 一种植物碰触响应启动子及其应用<120> A plant touch response promoter and its application
<160> 5<160> 5
<170> PatentIn version 3.5<170> PatentIn version 3.5
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atggaagacg ccaaaaacat aaagaaaggc ccggcgccat tctatcctct agaggatgga 60atggaagacg ccaaaaacat aaagaaaggc ccggcgccat tctatcctct agaggatgga 60
accgctggag agcaactgca taaggctatg aagagatacg ccctggttcc tggaacaatt 120accgctggag agcaactgca taaggctatg aagagatacg ccctggttcc tggaacaatt 120
gcttttacag atgcacatat cgaggtgaac atcacgtacg cggaatactt cgaaatgtcc 180gcttttacag atgcacatat cgaggtgaac atcacgtacg cggaatactt cgaaatgtcc 180
gttcggttgg cagaagctat gaaacgatat gggctgaata caaatcacag aatcgtcgta 240gttcggttgg cagaagctat gaaacgatat gggctgaata caaatcacag aatcgtcgta 240
tgcagtgaaa actctcttca attctttatg ccggtgttgg gcgcgttatt tatcggagtt 300tgcagtgaaa actctcttca attctttatg ccggtgttgg gcgcgttatt tatcggagtt 300
gcagttgcgc ccgcgaacga catttataat gaacgtgaat tgctcaacag tatgaacatt 360gcagttgcgc ccgcgaacga catttataat gaacgtgaat tgctcaacag tatgaacatt 360
tcgcagccta ccgtagtgtt tgtttccaaa aaggggttgc aaaaaatttt gaacgtgcaa 420tcgcagccta ccgtagtgtt tgtttccaaa aaggggttgc aaaaaatttt gaacgtgcaa 420
aaaaaattac caataatcca gaaaattatt atcatggatt ctaaaacgga ttaccaggga 480aaaaaattac caataatcca gaaaattatt atcatggatt ctaaaacgga ttaccaggga 480
tttcagtcga tgtacacgtt cgtcacatct catctacctc ccggttttaa tgaatacgat 540tttcagtcga tgtacacgtt cgtcacatct catctacctc ccggttttaa tgaatacgat 540
tttgtaccag agtcctttga tcgtgacaaa acaattgcac tgataatgaa ttcctctgga 600tttgtaccag agtcctttga tcgtgacaaa acaattgcac tgataatgaa ttcctctgga 600
tctactgggt tacctaaggg tgtggccctt ccgcatagaa ctgcctgcgt cagattctcg 660tctactgggt tacctaaggg tgtggccctt ccgcatagaa ctgcctgcgt cagattctcg 660
catgccagag atcctatttt tggcaatcaa atcattccgg atactgcgat tttaagtgtt 720catgccagag atcctatttt tggcaatcaa atcattccgg atactgcgat tttaagtgtt 720
gttccattcc atcacggttt tggaatgttt actacactcg gatatttgat atgtggattt 780gttccattcc atcacggttt tggaatgttt actacactcg gatatttgat atgtggattt 780
cgagtcgtct taatgtatag atttgaagaa gagctgtttt tacgatccct tcaggattac 840cgagtcgtct taatgtatag atttgaagaa gagctgtttt tacgatccct tcaggattac 840
aaaattcaaa gtgcgttgct agtaccaacc ctattttcat tcttcgccaa aagcactctg 900aaaattcaaa gtgcgttgct agtaccaacc ctattttcat tcttcgccaa aagcactctg 900
attgacaaat acgatttatc taatttacac gaaattgctt ctgggggcgc acctctttcg 960attgacaaat acgatttatc taatttacac gaaattgctt ctgggggcgc acctctttcg 960
aaagaagtcg gggaagcggt tgcaaaacgc ttccatcttc cagggatacg acaaggatat 1020aaagaagtcg gggaagcggt tgcaaaacgc ttccatcttc cagggatacg acaaggatat 1020
gggctcactg agactacatc agctattctg attacacccg agggggatga taaaccgggc 1080gggctcactg agactacatc agctattctg attacacccg agggggatga taaaccgggc 1080
gcggtcggta aagttgttcc attttttgaa gcgaaggttg tggatctgga taccgggaaa 1140gcggtcggta aagttgttcc attttttgaa gcgaaggttg tggatctgga taccgggaaa 1140
acgctgggcg ttaatcagag aggcgaatta tgtgtcagag gacctatgat tatgtccggt 1200acgctgggcg ttaatcagag aggcgaatta tgtgtcagag gacctatgat tatgtccggt 1200
tatgtaaaca atccggaagc gaccaacgcc ttgattgaca aggatggatg gctacattct 1260tatgtaaaca atccggaagc gaccaacgcc ttgattgaca aggatggatg gctacattct 1260
ggagacatag cttactggga cgaagacgaa cacttcttca tagttgaccg cttgaagtct 1320ggagacatag cttactggga cgaagacgaa cacttcttca tagttgaccg cttgaagtct 1320
ttaattaaat acaaaggata tcaggtggcc cccgctgaat tggaatcgat attgttacaa 1380ttaattaaat acaaaggata tcaggtggcc cccgctgaat tggaatcgat attgttacaa 1380
caccccaaca tcttcgacgc gggcgtggca ggtcttcccg acgatgacgc cggtgaactt 1440caccccaaca tcttcgacgc gggcgtggca ggtcttcccg acgatgacgc cggtgaactt 1440
cccgccgccg ttgttgtttt ggagcacgga aagacgatga cggaaaaaga gatcgtggat 1500cccgccgccg ttgttgtttt ggagcacgga aagacgatga cggaaaaaga gatcgtggat 1500
tacgtcgcca gtcaagtaac aaccgcgaaa aagttgcgcg gaggagttgt gtttgtggac 1560tacgtcgcca gtcaagtaac aaccgcgaaa aagttgcgcg gaggagttgt gtttgtggac 1560
gaagtaccga aaggtcttac cggaaaactc gacgcaagaa aaatcagaga gatcctcata 1620gaagtaccga aaggtcttac cggaaaactc gacgcaagaa aaatcagaga gatcctcata 1620
aaggccaaga agggcggaaa gtccaaattg taa 1653aaggccaaga agggcggaaa gtccaaattg taa 1653
<210> 2<210> 2
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Met Glu Asp Ala Lys Asn Ile Lys Lys Gly Pro Ala Pro Phe Tyr ProMet Glu Asp Ala Lys Asn Ile Lys Lys Gly Pro Ala Pro Phe Tyr Pro
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Leu Glu Asp Gly Thr Ala Gly Glu Gln Leu His Lys Ala Met Lys ArgLeu Glu Asp Gly Thr Ala Gly Glu Gln Leu His Lys Ala Met Lys Arg
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Tyr Ala Leu Val Pro Gly Thr Ile Ala Phe Thr Asp Ala His Ile GluTyr Ala Leu Val Pro Gly Thr Ile Ala Phe Thr Asp Ala His Ile Glu
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Val Asn Ile Thr Tyr Ala Glu Tyr Phe Glu Met Ser Val Arg Leu AlaVal Asn Ile Thr Tyr Ala Glu Tyr Phe Glu Met Ser Val Arg Leu Ala
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Glu Ala Met Lys Arg Tyr Gly Leu Asn Thr Asn His Arg Ile Val ValGlu Ala Met Lys Arg Tyr Gly Leu Asn Thr Asn His Arg Ile Val Val
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Cys Ser Glu Asn Ser Leu Gln Phe Phe Met Pro Val Leu Gly Ala LeuCys Ser Glu Asn Ser Leu Gln Phe Phe Met Pro Val Leu Gly Ala Leu
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Phe Ile Gly Val Ala Val Ala Pro Ala Asn Asp Ile Tyr Asn Glu ArgPhe Ile Gly Val Ala Val Ala Pro Ala Asn Asp Ile Tyr Asn Glu Arg
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Glu Leu Leu Asn Ser Met Asn Ile Ser Gln Pro Thr Val Val Phe ValGlu Leu Leu Asn Ser Met Asn Ile Ser Gln Pro Thr Val Val Phe Val
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Ser Lys Lys Gly Leu Gln Lys Ile Leu Asn Val Gln Lys Lys Leu ProSer Lys Lys Gly Leu Gln Lys Ile Leu Asn Val Gln Lys Lys Leu Pro
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Ile Ile Gln Lys Ile Ile Ile Met Asp Ser Lys Thr Asp Tyr Gln GlyIle Ile Gln Lys Ile Ile Ile Met Asp Ser Lys Thr Asp Tyr Gln Gly
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Phe Gln Ser Met Tyr Thr Phe Val Thr Ser His Leu Pro Pro Gly PhePhe Gln Ser Met Tyr Thr Phe Val Thr Ser His Leu Pro Pro Gly Phe
165 170 175 165 170 175
Asn Glu Tyr Asp Phe Val Pro Glu Ser Phe Asp Arg Asp Lys Thr IleAsn Glu Tyr Asp Phe Val Pro Glu Ser Phe Asp Arg Asp Lys Thr Ile
180 185 190 180 185 190
Ala Leu Ile Met Asn Ser Ser Gly Ser Thr Gly Leu Pro Lys Gly ValAla Leu Ile Met Asn Ser Ser Gly Ser Thr Gly Leu Pro Lys Gly Val
195 200 205 195 200 205
Ala Leu Pro His Arg Thr Ala Cys Val Arg Phe Ser His Ala Arg AspAla Leu Pro His Arg Thr Ala Cys Val Arg Phe Ser His Ala Arg Asp
210 215 220 210 215 220
Pro Ile Phe Gly Asn Gln Ile Ile Pro Asp Thr Ala Ile Leu Ser ValPro Ile Phe Gly Asn Gln Ile Ile Pro Asp Thr Ala Ile Leu Ser Val
225 230 235 240225 230 235 240
Val Pro Phe His His Gly Phe Gly Met Phe Thr Thr Leu Gly Tyr LeuVal Pro Phe His His Gly Phe Gly Met Phe Thr Thr Leu Gly Tyr Leu
245 250 255 245 250 255
Ile Cys Gly Phe Arg Val Val Leu Met Tyr Arg Phe Glu Glu Glu LeuIle Cys Gly Phe Arg Val Val Leu Met Tyr Arg Phe Glu Glu Glu Leu
260 265 270 260 265 270
Phe Leu Arg Ser Leu Gln Asp Tyr Lys Ile Gln Ser Ala Leu Leu ValPhe Leu Arg Ser Leu Gln Asp Tyr Lys Ile Gln Ser Ala Leu Leu Val
275 280 285 275 280 285
Pro Thr Leu Phe Ser Phe Phe Ala Lys Ser Thr Leu Ile Asp Lys TyrPro Thr Leu Phe Ser Phe Phe Ala Lys Ser Thr Leu Ile Asp Lys Tyr
290 295 300 290 295 300
Asp Leu Ser Asn Leu His Glu Ile Ala Ser Gly Gly Ala Pro Leu SerAsp Leu Ser Asn Leu His Glu Ile Ala Ser Gly Gly Ala Pro Leu Ser
305 310 315 320305 310 315 320
Lys Glu Val Gly Glu Ala Val Ala Lys Arg Phe His Leu Pro Gly IleLys Glu Val Gly Glu Ala Val Ala Lys Arg Phe His Leu Pro Gly Ile
325 330 335 325 330 335
Arg Gln Gly Tyr Gly Leu Thr Glu Thr Thr Ser Ala Ile Leu Ile ThrArg Gln Gly Tyr Gly Leu Thr Glu Thr Thr Ser Ala Ile Leu Ile Thr
340 345 350 340 345 350
Pro Glu Gly Asp Asp Lys Pro Gly Ala Val Gly Lys Val Val Pro PhePro Glu Gly Asp Asp Lys Pro Gly Ala Val Gly Lys Val Val Pro Phe
355 360 365 355 360 365
Phe Glu Ala Lys Val Val Asp Leu Asp Thr Gly Lys Thr Leu Gly ValPhe Glu Ala Lys Val Val Asp Leu Asp Thr Gly Lys Thr Leu Gly Val
370 375 380 370 375 380
Asn Gln Arg Gly Glu Leu Cys Val Arg Gly Pro Met Ile Met Ser GlyAsn Gln Arg Gly Glu Leu Cys Val Arg Gly Pro Met Ile Met Ser Gly
385 390 395 400385 390 395 400
Tyr Val Asn Asn Pro Glu Ala Thr Asn Ala Leu Ile Asp Lys Asp GlyTyr Val Asn Asn Pro Glu Ala Thr Asn Ala Leu Ile Asp Lys Asp Gly
405 410 415 405 410 415
Trp Leu His Ser Gly Asp Ile Ala Tyr Trp Asp Glu Asp Glu His PheTrp Leu His Ser Gly Asp Ile Ala Tyr Trp Asp Glu Asp Glu His Phe
420 425 430 420 425 430
Phe Ile Val Asp Arg Leu Lys Ser Leu Ile Lys Tyr Lys Gly Tyr GlnPhe Ile Val Asp Arg Leu Lys Ser Leu Ile Lys Tyr Lys Gly Tyr Gln
435 440 445 435 440 445
Val Ala Pro Ala Glu Leu Glu Ser Ile Leu Leu Gln His Pro Asn IleVal Ala Pro Ala Glu Leu Glu Ser Ile Leu Leu Gln His Pro Asn Ile
450 455 460 450 455 460
Phe Asp Ala Gly Val Ala Gly Leu Pro Asp Asp Asp Ala Gly Glu LeuPhe Asp Ala Gly Val Ala Gly Leu Pro Asp Asp Asp Ala Gly Glu Leu
465 470 475 480465 470 475 480
Pro Ala Ala Val Val Val Leu Glu His Gly Lys Thr Met Thr Glu LysPro Ala Ala Val Val Val Leu Glu His Gly Lys Thr Met Thr Glu Lys
485 490 495 485 490 495
Glu Ile Val Asp Tyr Val Ala Ser Gln Val Thr Thr Ala Lys Lys LeuGlu Ile Val Asp Tyr Val Ala Ser Gln Val Thr Thr Ala Lys Lys Leu
500 505 510 500 505 510
Arg Gly Gly Val Val Phe Val Asp Glu Val Pro Lys Gly Leu Thr GlyArg Gly Gly Val Val Phe Val Asp Glu Val Pro Lys Gly Leu Thr Gly
515 520 525 515 520 525
Lys Leu Asp Ala Arg Lys Ile Arg Glu Ile Leu Ile Lys Ala Lys LysLys Leu Asp Ala Arg Lys Ile Arg Glu Ile Leu Ile Lys Ala Lys Lys
530 535 540 530 535 540
Gly Gly Lys Ser Lys LeuGly Gly Lys Ser Lys Leu
545 550545 550
<210> 3<210> 3
<211> 1374<211> 1374
<212> DNA<212> DNA
<213> 拟南芥 (Arabidopsis thaliana)<213> Arabidopsis thaliana
<400> 3<400> 3
agcttattac tctcttcctt ggttttgttt tatttttatc tagttttagt tttgaaattt 60agcttattac tctcttcctt ggttttgttt tatttttatc tagttttagt tttgaaattt 60
atttttttta ttatgaattt taaaaattta atttttattt gtgttggaat ttttttattt 120attttttttta ttatgaattt taaaaattta atttttattt gtgttggaat ttttttattt 120
tctttgtaac ctatatgaac ttggatattt tttttctttc ttacattaat taagtacgta 180tctttgtaac ctatatgaac ttggatattt ttttttctttc ttacattaat taagtacgta 180
agtttcgaca atcaagaata gggttttgtt gattccaatc gtgttaccca aaaattagaa 240agtttcgaca atcaagaata gggttttgtt gattccaatc gtgttaccca aaaattagaa 240
taaggtttgt ccaacaattt attaaatttg gtcttagagt tgtatacgag cctacgaggt 300taaggtttgt ccaacaattt attaaatttg gtcttagagt tgtatacgag cctacgaggt 300
atcttttaga tatgccgaag agatggtagt gcgaagaaga aaagaaacct cattttccat 360atcttttaga tatgccgaag agatggtagt gcgaagaaga aaagaaacct cattttccat 360
ggtattaagg atttcaagct attcaaactt ttgtagtgac ccaaatacgt gtagaactgg 420ggtattaagg atttcaagct attcaaactt ttgtagtgac ccaaatacgt gtagaactgg 420
cccaaagaca aatagcttaa ttaagattat cacctaatct taggtattgg tgataggtga 480cccaaagaca aatagcttaa ttaagattat cacctaatct taggtattgg tgataggtga 480
ttcgctcaag ccttatgatc aatattagct ccatattatg gagagtgagc agcacatact 540ttcgctcaag ccttatgatc aatattagct ccatattatg gagagtgagc agcacatact 540
cgtagataga aaagtattgt tgctcgagta atatttttct gatgataatt gtgtttcgac 600cgtagataga aaagtattgt tgctcgagta atatttttct gatgataatt gtgtttcgac 600
cactgttggc atctttcaca catgaataca tgatgtacat gtacgacatg caatctttct 660cactgttggc atctttcaca catgaataca tgatgtacat gtacgacatg caatctttct 660
cttaacgctc gactgctgtc tgctgtgatg gatcatcaca agtaaacttt gtgaagcata 720cttaacgctc gactgctgtc tgctgtgatg gatcatcaca agtaaacttt gtgaagcata 720
tttcgtgagc caaatgatgt tagaaaacaa tcgtgtgagc caaaggcgtg agagcgcttg 780tttcgtgagc caaatgatgt tagaaaacaa tcgtgtgagc caaaggcgtg agagcgcttg 780
tagaaagtgg tttatgttgt agttaaaata atccgaatat tcatcttccg gaaaaaagtg 840tagaaagtgg tttatgttgt agttaaaata atccgaatat tcatcttccg gaaaaaagtg 840
aagttcaacc tctcaacggt acgtttttat acctcaacta agttacattg tgtatatcaa 900aagttcaacc tctcaacggt acgtttttat acctcaacta agttacattg tgtatatcaa 900
catcagctaa ctttttatta atatttcggt tcacaatatc attatctttt tcaaaattta 960catcagctaa ctttttatta atatttcggt tcacaatatc attatctttt tcaaaattta 960
ttaagatttc ttttgctcat tttatttatg tgaattttaa aaataaaata atttttataa 1020ttaagatttc ttttgctcat tttatttatg tgaattttaa aaataaaata atttttataa 1020
tatagaaaca aaatattact aaaagtaatt tttaaaaaat aaataaaatt aatgtcatat 1080tatagaaaca aaatattact aaaagtaatt tttaaaaaat aaataaaatt aatgtcatat 1080
caacgaaaaa ttcatagttt attaaagtag taaatataaa agtaataata ttttaattat 1140caacgaaaaa ttcatagttt attaaagtag taaatataaa agtaataata ttttaattat 1140
tttggtatta aattatacac ttttattaat atatgtattt tcttctaaaa attaaaaatt 1200tttggtatta aattatacac ttttattaat atatgtattt tcttctaaaa attaaaaatt 1200
aattgggttt ttgtttggaa tttttccgac ttaccttttc tccttctttt tgtcgttttg 1260aattgggttt ttgtttggaa ttttttccgac ttaccttttc tccttctttt tgtcgttttg 1260
cttagatatt tgtttgcatc attttcaaag agagacgact ctgaatccaa aaaaaaaaaa 1320cttagatatt tgtttgcatc attttcaaag agagacgact ctgaatccaa aaaaaaaaaa 1320
aactcattaa gtaaagacaa aggaagagaa gaaagacgat ttctcgaaga agct 1374aactcattaa gtaaagacaa aggaagagaa gaaagacgat ttctcgaaga agct 1374
<210> 4<210> 4
<211> 1400<211> 1400
<212> DNA<212> DNA
<213> 拟南芥 (Arabidopsis thaliana)<213> Arabidopsis thaliana
<400> 4<400> 4
cattagggtc tggctggtat gttagatctc tctaaaaagg cgtttgatct ttgaaaataa 60cattagggtc tggctggtat gttagatctc tctaaaaagg cgtttgatct ttgaaaataa 60
tttctatgta ataaatttat tgtgttacca tcttttcttg catgcaattt attaaaatga 120tttctatgta ataaatttat tgtgttacca tcttttcttg catgcaattt attaaaatga 120
gtttgtaata tggtttcagt atcgaatata attggggtat caatgtatct tttgagaaaa 180gtttgtaata tggtttcagt atcgaatata attggggtat caatgtatct tttgagaaaa 180
acatttaaaa cgtagcagaa ctaattattg aaaactggta gcattactaa aaattgatct 240acatttaaaa cgtagcagaa ctaattattg aaaactggta gcattactaa aaattgatct 240
aaatcggtta atgatttggc acatacagtg atcaaatcag ctaagcctca tatctcaccg 300aaatcggtta atgatttggc acatacagtg atcaaatcag ctaagcctca tatctcaccg 300
tcccagagtt cttcaagact cttataagga ctcatctaat gaataatgac atgcctcgca 360tcccagagtt cttcaagact cttataagga ctcatctaat gaataatgac atgcctcgca 360
ccaacctgcc ctgcaacatt gaaaacacac gtctacaatt tcgataaccc aagtgttttg 420ccaacctgcc ctgcaacatt gaaaacacac gtctacaatt tcgataaccc aagtgttttg 420
agcaaaacaa aggacgccct ttgacccatt tggactacaa tgtgtggaaa attactgcat 480agcaaaacaa aggacgccct ttgacccatt tggactacaa tgtgtggaaa attactgcat 480
gttcaatatc agaaaacttg gataacatgt cttcgatatg ggcttttctt attttgtacc 540gttcaatatc agaaaacttg gataacatgt cttcgatatg ggcttttctt attttgtacc 540
cgtgtaattt cgctggccca aaatccaaag caacaagggt aaatttgtat gcagtacatg 600cgtgtaattt cgctggccca aaatccaaag caacaagggt aaatttgtat gcagtacatg 600
tggcatgttg ggtcatatgg aaacaggtca caagactcag attctttaca ttgcggcggg 660tggcatgttg ggtcatatgg aaacaggtca caagactcag attctttaca ttgcggcggg 660
tagtagtagc tttctagtct accttgagat tgcccctgcc cgtgattctt gagtcgggca 720tagtagtagc tttctagtct accttgagat tgcccctgcc cgtgattctt gagtcgggca 720
caggaagtgg ttttctgtca actttacttg ctcaagccat ccccgcaagg tagaaacttc 780caggaagtgg ttttctgtca actttacttg ctcaagccat ccccgcaagg tagaaacttc 780
tgtggtcttt ctcgttattt cttatgtacc atgtttttgg tcgtttgtgt agtttcttct 840tgtggtcttt ctcgttattt cttatgtacc atgtttttgg tcgtttgtgt agtttcttct 840
aaccttccac acacttgtct tgcgaattcc ttccacagca gagatgttaa atcaggaata 900aaccttccac acacttgtct tgcgaattcc ttccacagca gagatgttaa atcaggaata 900
ttcaggatgt agaaacttct ctgctctttc tcaagtagaa tgcacttgtg gaatccctca 960ttcaggatgt agaaacttct ctgctctttc tcaagtagaa tgcacttgtg gaatccctca 960
gatcagattt cattggtaac gttcgttaac ttcaacaaca acactttact aaacatgtgc 1020gatcagattt cattggtaac gttcgttaac ttcaacaaca acactttact aaacatgtgc 1020
taatcaattg tcatacgctt gtatttcttc gattcatttt tatcttatgc aagtgttttc 1080taatcaattg tcatacgctt gtatttcttc gattcatttt tatcttatgc aagtgttttc 1080
tctattatga tttatttagt tttgcataaa taaggacact ccttcggagt cagtataaga 1140tctattatga tttatttagt tttgcataaa taaggacact ccttcggagt cagtataaga 1140
aaactataac ctaaaatata aattaggcaa atgtccactc acccatccaa aattccattg 1200aaactataac ctaaaatata aattaggcaa atgtccactc acccatccaa aattccattg 1200
taaataaatg tttctttcaa ataaatgaaa aaaaaaaaaa aaaacaagtt ggaagaagga 1260taaataaatg tttctttcaa ataaatgaaa aaaaaaaaaa aaaacaagtt ggaagaagga 1260
accaaccaag taattgccag tcaaaggagg cgactcacac ttgaaaggat aagctgacat 1320accaaccaag taattgccag tcaaaggagg cgactcacac ttgaaaggat aagctgacat 1320
ggcagacaac gatcctgcgt agaaattgcg tgaacgtgga aaagtttgag gatatagccg 1380ggcagacaac gatcctgcgt agaaattgcg tgaacgtgga aaagtttgag gatatagccg 1380
tcatttcaaa taattcgggt 1400tcatttcaaa taattcgggt 1400
<210> 5<210> 5
<211> 346<211> 346
<212> DNA<212> DNA
<213> 人工序列<213> Artificial sequences
<220><220>
<223><223>
<400> 5<400> 5
tgagactttt caacaaaggg taatttcggg aaacctcctc ggattccatt gcccagctat 60tgagactttt caacaaaggg taatttcggg aaacctcctc ggattccatt gcccagctat 60
ctgtcacttc atcgaaagga cagtagaaaa ggaaggtggc tcctacaaat gccatcattg 120ctgtcacttc atcgaaagga cagtagaaaa ggaaggtggc tcctacaaat gccatcattg 120
cgataaagga aaggctatca ttcaagatgc ctctgccgac agtggtccca aagatggacc 180cgataaagga aaggctatca ttcaagatgc ctctgccgac agtggtccca aagatggacc 180
cccacccacg aggagcatcg tggaaaaaga agacgttcca accacgtctt caaagcaagt 240cccacccacg aggagcatcg tggaaaaaga agacgttcca accacgtctt caaagcaagt 240
ggattgatgt gacatctcca ctgacgtaag ggatgacgca caatcccact atccttcgca 300ggattgatgt gacatctcca ctgacgtaag ggatgacgca caatcccact atccttcgca 300
agacccttcc tctatataag gaagttcatt tcatttggag aggaca 346agacccttcc tctatataag gaagttcatt tcatttggag aggaca 346
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