CN107287320A - The LAMP detections of GAPDH genes are combined and kit with primer - Google Patents

The LAMP detections of GAPDH genes are combined and kit with primer Download PDF

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Publication number
CN107287320A
CN107287320A CN201710567594.8A CN201710567594A CN107287320A CN 107287320 A CN107287320 A CN 107287320A CN 201710567594 A CN201710567594 A CN 201710567594A CN 107287320 A CN107287320 A CN 107287320A
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primer
sequence
seq
lamp
gapdh
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邢志芳
曹国君
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    • C12Q1/00Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
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    • C12Q1/6844Nucleic acid amplification reactions
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    • C12Q1/68Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6876Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes
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    • C12QMEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
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    • C12Q2600/166Oligonucleotides used as internal standards, controls or normalisation probes

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Abstract

Combined the invention provides a kind of GAPDH genetic tests with primer and kit, using sequence shown in SEQ ID No.1 as target sequence, design primer combination, the primer combination includes F3, B3, FIP, BIP, LF, LB.The primer sets are shared in LAMP detection kit, as a result show that primer combination does not occur non-specific amplification and primer inside primer and the non-specific binding amplification of template, the internal reference system of quality control of humanization sample LAMP methods amplification has been successfully established, preliminary basis is established in clinical extensive use for LAMP methods in future.

Description

The LAMP detections of GAPDH genes are combined and kit with primer
Technical field
Combined the present invention relates to a kind of GAPDH genetic tests with primer and kit, belong to biological technical field.
Background technology
GAPDH or G3PDH are glyceraldehyde-3-phosphate dehydrogenase (glyceraldehyde-3-phosphate Dehydrogenase english abbreviation).The enzyme is an enzyme in glycolysis reaction, is made up of 4 30-40kDa subunit, Molecular weight 146kDa.The enzyme gene is house keeper (house keeping) gene, almost in a organized way in all high level expressions, Protein expression amount in allogenic cell or tissue is usually constant, and not by containing part recognition site, Buddhist ripple The influence of the inducing substance of fat etc. and keep constant, therefore be widely used as PCR, extracting total RNA, poly (A)+RNA, The internal reference of the standardization of the experimental implementations such as Western blot.
With the development of laboratory medicine, some Protocols in Molecular Biologies, such as PCR, strand displacement amplification, medical test with It played an important role in terms of diagnosis.However, due to Protocols in Molecular Biology detect nucleic acid to instrument, equipment requirement compared with Height, operation sequence is complicated, limits it as the development and popularization of fast diagnosis method, loop-mediated isothermal amplification technique (loop Mediated isothermal amplification, LAMP) solve the difficulty such as equipment costliness, program complexity in diagnostic nucleic acid Topic.
LAMP reactions only need a kind of archaeal dna polymerase (such as Bst, Gsp) for having strand-displacement activity and individual for target gene 6-8 The 4-6 bars primer (F3/B3 and FIP/BIP are required, and LF/LB is optional) of region design just can be under 60 DEG C~66 DEG C of steady temperature Realize that the target gene for being more than 109 times in dozens of minutes is expanded, its lower bound detected up to 10 copies/microlitre, by high expansion Increasing Efficiency and relatively low instrument requirements, the technology are gradually applied to pathogen identification, biological marker analyte detection, sex identification Deng, it should be noted that:The laboratories detection field of LAMP technology quick detection, field detection and resource-constrained by bed There is spacious wealthy prospect.
Limit to however, the in vitro practical application of LAMP technology is relative in recent years, be in progress relatively slow, this seminar Find that limiting its wide variety of major reason there are two according to the research of early stage, be specially:(1) current lamp systems are difficult To realize high-throughout detection truly, await further perfect;(2) although nothing in LAMP systems, detection process Heating and cooling are needed, reaction speed can be greatly speeded up, efficient, quick detection is realized, but compared with traditional real-time PCR methodology, The less stable of LAMP systems, often occurs and contains excessive PCR inhibitor in failure or sample because sample nucleic acid is extracted Caused amplification failure, so as to cause the appearance of false negative result, therefore, in order to avoid false negative, improves testing result credible Degree is, it is necessary to introduce internal reference amplification system, to sample process and the progress effective monitoring of the process of detection.
The content of the invention
The technical problem to be solved in the present invention is, in view of the shortcomings of the prior art, proposing a kind of GAPDH genetic tests primer Combination and kit.For people source biological specimen, with one section of highly conserved target sequence on people's GAPDH genes, primer is designed, Establish GAPDH-LAMP detection architectures and optimize, be successfully established the internal reference Quality Control body of humanization sample LAMP methods amplification System, preliminary basis is established for LAMP methods in future in clinical extensive use.
The purpose of the present invention is achieved through the following technical solutions:
In a first aspect, the invention provides a kind of target sequence for people's GAPDH genetic tests, the sequence such as SEQ ID Shown in No.1.
Second aspect, the invention provides a kind of primer combination designed according to foregoing target sequence, the primer combination bag Include F3, B3, FIP, BIP, LF, LB;The sequence of the primers F 3 is as shown in SEQ ID No.2, primer B3 sequence such as SEQ ID Shown in No.3, primers F IP sequence is as shown in SEQ ID No.4, and primer BIP sequence is as shown in SEQ ID No.5, primer LF Sequence as shown in SEQ ID No.6, primer LB sequence is as shown in SEQ ID No.7.
The third aspect, the invention provides a kind of application of primer combination in detection GAPDH genes.
Fourth aspect, the invention provides a kind of LAMP kit for people's GAPDH genetic tests, including amplified reaction System, the cumulative volume of the amplification reaction system is 25 μ L, including:The μ L of 2 × reaction buffer 12.5, primers F 3:1 μ L, primer B3:1 μ L, primers F IP:0.5 μ L, primer BIP:1 μ L, primer LF:1 μ L, primer LB:The μ L of 1 μ L, Bst archaeal dna polymerase 1, calcium is yellow Green plain 1 μ L, the μ L of deionized water 3.0, the μ L of human gene group DNA's template 2.
Preferably, the primers F 3 and primer B3 final concentration of 0.2 μm of ol/L, primers F IP and primer BIP final concentration For 1.6 μm of ol/L, primer LF and primer LB final concentration of 0.8 μm of ol/L.
Preferably, the concentration of the Bst archaeal dna polymerases is 8U.
5th aspect, the invention provides a kind of method for detecting people's GAPDH genes, comprises the following steps:Using foregoing LAMP kit carry out LAMP reactions, reaction terminate after, judged by the color change of reaction solution, the color of reaction solution From it is original it is faint yellow be changed into green, that is, be determined as reacting positive.
Preferably, the condition of the LAMP reactions is:65 DEG C of reaction temperature, reaction time 60min.
Compared with prior art, the present invention has following beneficial effect:
With one section of highly conserved target sequence on people's GAPDH genes, primer is designed, the primer sets are shared in LAMP detections In kit, as a result show that primer combination does not occur non-specific amplification and primer inside primer and the non-specific knot of template Amplification is closed, GAPDH-LAMP detection architectures is thereby establish and optimizes, the amplification of humanization sample LAMP methods has been successfully established Internal reference system of quality control, establish preliminary basis in clinical extensive use for LAMP methods in future.
Brief description of the drawings
By reading the detailed description made with reference to the following drawings to non-limiting example, further feature of the invention, Objects and advantages will become more apparent upon:
Fig. 1, the testing result schematic diagram for the embodiment of the present invention;Wherein, A1:Clinical wildtype genomic DNA is template, A2:108Copies/ml plasmid sample, A3:107Copies/ml plasmid sample, A4:106Copies/ml plasmid sample, A5:105Copies/ml plasmid sample, A6:104Copies/ml plasmid sample, A7:103Copies/ml plasmid sample, A8:Negative control sample.
Embodiment
With reference to specific embodiment, the present invention is described in detail.Following examples will be helpful to the technology of this area Personnel further understand the present invention, but the invention is not limited in any way.It should be pointed out that to the ordinary skill of this area For personnel, without departing from the inventive concept of the premise, some changes and improvements can also be made.These belong to the present invention Protection domain.
The GAPDH-LAMP detection architectures of embodiment 1 are set up
(1) with one section of highly conserved target sequence on people's GAPDH genes, design primer, the long 185bp of target sequence, Specially:
GAACCAGCACCGATCACCTCCCATCGGGCCAATCTCAGTCCCTTCCCCCCTACGTCGGGGCCCACACGCTCGGTGCG TGCCCAGTTGAACCAGGCGGCTGCGGAAAAAAAAAAGCGGGGAGAAAGTAGGGCCCGGCTACTAGCGGTTTTACGGG CGCACGTAGCTCAGGCCTCAAGACCTTGGGC(SEQ ID No.1)
The primer sequence is as shown in table 1.
Table 1
(2) kit used includes amplification reaction system, and the cumulative volume of the amplification reaction system is 25 μ L, and it includes The μ L of 2 × reaction buffer (RM) 12.5, primers F 3:1 μ L (0.2 μm of ol/L of final concentration), primer B3:1 μ L (0.2 μm of ol/ of final concentration L), primers F IP:0.5 μ L (1.6 μm of ol/L of final concentration), primer BIP:1 μ L (1.6 μm of ol/L of final concentration), primer LF:1 μ L are (eventually 0.8 μm of ol/L of concentration), primer LB:1 μ L (0.8 μm of ol/L of final concentration), the μ L (8U) of Bst archaeal dna polymerases 1, calcein (FD) 1 μ L, the μ L of deionized water 3.0, the μ L of DNA profiling 2.
LAMP reactions are carried out using mentioned reagent box, LAMP reaction conditions are:65 DEG C, 60min;Equipment used is common PCR instrument or constant-temperature metal bath etc. can stablize the equipment for providing 65 DEG C of constant temperature;Then carry out visualization interpretation is to identify sample No is the positive, and as a result judgement is specially:After reaction terminates, the color of reaction solution from it is original it is faint yellow be changed into green, that is, judge For reacting positive.
The LAMP detections of the GAPDH genes of embodiment 2
The TA cloned plasmids containing target sequence (SEQ ID No.1) are built, the double sample of gradient concentration, specific concentration is prepared For 103copies/ml、104copies/ml、105copies/ml、106copies/ml、107copies/ml、108copies/ Ml, the GAPDH-LAMP reaction systems set up with embodiment 1 are detected, can be detected, as a result as shown in Figure 1.Wherein, A1:Human peripheral genomic DNA is template, A2:108Copies/ml plasmid sample, A3:107Copies/ml plasmid sample This, A4:106Copies/ml plasmid sample, A5:105Copies/ml plasmid sample, A6:104Copies/ml plasmid sample This, A7:103Copies/ml plasmid sample, A8:Negative control sample.After the system of A1-A7 samples is expanded through 60min, Greening becomes cloudy, and positive findings is presented;A8 is negative control, after being expanded through 60min, is not any change, still faint yellow clarification, Negative findings is presented.
In summary, the present invention has following beneficial effect:
With one section of highly conserved target sequence on people's GAPDH genes, primer is designed, the primer sets are shared in LAMP detections In kit, as a result show that primer combination does not occur non-specific amplification and primer inside primer and the non-specific knot of template Amplification is closed, GAPDH-LAMP detection architectures is thereby establish and optimizes, the amplification of humanization sample LAMP methods has been successfully established Internal reference system of quality control, establish preliminary basis in clinical extensive use for LAMP methods in future.
The specific embodiment of the present invention is described above.It is to be appreciated that the invention is not limited in above-mentioned Particular implementation, those skilled in the art can make a variety of changes or change within the scope of the claims, this not shadow Ring the substantive content of the present invention.In the case where not conflicting, feature in embodiments herein and embodiment can any phase Mutually combination.
SEQUENCE LISTING
<110>Cao monarch
<120>The LAMP detections of GAPDH genes are combined and kit with primer
<130> DAG29909
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<170> PatentIn version 3.3
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gaaccagcac cgatcacctc ccatcgggcc aatctcagtc ccttcccccc tacgtcgggg 60
cccacacgct cggtgcgtgc ccagttgaac caggcggctg cggaaaaaaa aaagcgggga 120
gaaagtaggg cccggctact agcggtttta cgggcgcacg tagctcaggc ctcaagacct 180
tgggc 185
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gaaccagcac cgatcacc 18
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gcccaaggtc ttgaggc 17
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Claims (8)

1. a kind of target sequence for people's GAPDH genetic tests, it is characterised in that the sequence is as shown in SEQ ID No.1.
2. a kind of primer combination of the design of the target sequence according to claim 1, it is characterised in that the primer combination includes F3、B3、FIP、BIP、LF、LB;The sequence of the primers F 3 is as shown in SEQ ID No.2, primer B3 sequence such as SEQ ID Shown in No.3, primers F IP sequence is as shown in SEQ ID No.4, and primer BIP sequence is as shown in SEQ ID No.5, primer LF Sequence as shown in SEQ ID No.6, primer LB sequence is as shown in SEQ ID No.7.
3. a kind of application of primer combination according to claim 2 in detection GAPDH genes.
4. a kind of LAMP kit for people's GAPDH genetic tests, it is characterised in that including amplification reaction system, the expansion The cumulative volume for increasing reaction system is 25 μ L, including:The μ L of 2 × reaction buffer 12.5, primers F 3:1 μ L, primer B3:1 μ L, primer FIP:0.5 μ L, primer BIP:1 μ L, primer LF:1 μ L, primer LB:1 μ L, BstDNA polymerase 1 μ L, the μ L of calcein 1, go from The sub- μ L of water 3.0, the μ L of human gene group DNA's template 2.
5. the LAMP kit according to claim 4 for people's GAPDH genetic tests, it is characterised in that the primer F3 and primer B3 final concentration of 0.2 μm of ol/L, primers F IP and primer BIP final concentration of 1.6 μm of ol/L, primer LF and draw Thing LB final concentration of 0.8 μm of ol/L.
6. the LAMP kit according to claim 4 for people's GAPDH genetic tests, it is characterised in that the Bst The concentration of archaeal dna polymerase is 8U.
7. a kind of method for detecting people's GAPDH genes, it is characterised in that comprise the following steps:Using described in claim 4 LAMP kit carries out LAMP reactions, after reaction terminates, is judged by the color change of reaction solution, the color of reaction solution by Originally faint yellow is changed into green, that is, is determined as reacting positive.
8. the method for detection people's GAPDH genes according to claim 7, it is characterised in that the condition of the LAMP reactions For:65 DEG C of reaction temperature, reaction time 60min.
CN201710567594.8A 2017-07-12 2017-07-12 The LAMP detections of GAPDH genes are combined and kit with primer Pending CN107287320A (en)

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Cited By (4)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
CN107988358A (en) * 2017-12-28 2018-05-04 湖北工业大学 A kind of the internal reference amplimer composition and its amplification system of detection NPPA gene mutations c.T413C
CN110863051A (en) * 2019-12-13 2020-03-06 广州迈景基因医学科技有限公司 Primer, system and kit for MET gene amplification detection
CN112266986A (en) * 2020-12-22 2021-01-26 博奥生物集团有限公司 Virus nucleic acid extraction or preservation reagent, primer probe combination, virus amplification reagent, kit and application thereof
US11788129B2 (en) 2021-02-23 2023-10-17 Industrial Technology Research Institute Nucleic acid detection kit and nucleic acid detection method

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CN1633500A (en) * 2002-02-20 2005-06-29 希森美康株式会社 Primers for nucleic acid amplification in detecting housekeeping gene mRNA and test method using these primers
WO2014060604A2 (en) * 2012-10-20 2014-04-24 Selfdiagnostics OÜ Method and its compositions for detection of nucleic acid target from biological samples and body fluids
EP3098326A1 (en) * 2015-05-27 2016-11-30 Institut Pasteur Isothermal amplification assay for rapid and accurate detection of hemorrhagic fever viruses in clinical samples

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Cited By (5)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
CN107988358A (en) * 2017-12-28 2018-05-04 湖北工业大学 A kind of the internal reference amplimer composition and its amplification system of detection NPPA gene mutations c.T413C
CN110863051A (en) * 2019-12-13 2020-03-06 广州迈景基因医学科技有限公司 Primer, system and kit for MET gene amplification detection
CN110863051B (en) * 2019-12-13 2020-10-23 广州迈景基因医学科技有限公司 Primer, system and kit for MET gene amplification detection
CN112266986A (en) * 2020-12-22 2021-01-26 博奥生物集团有限公司 Virus nucleic acid extraction or preservation reagent, primer probe combination, virus amplification reagent, kit and application thereof
US11788129B2 (en) 2021-02-23 2023-10-17 Industrial Technology Research Institute Nucleic acid detection kit and nucleic acid detection method

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Application publication date: 20171024