CN106317211A - Rape grain weight related gene ARF 18 and application thereof - Google Patents
Rape grain weight related gene ARF 18 and application thereof Download PDFInfo
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Abstract
The invention provides a rape grain weight related gene ARF 18 and an application thereof. The rape grain weight can be controlled by virtue of the ARF18 gene by map-based cloning, and the ARF gene sequence is shown as SEQ ID NO.2. The ARF gene has great promotion effect on the molecular mechanism research on plant grain weight regulation and control. The cloned rape ARF18 gene has an obvious effect of regulating and controlling the grain weight of rape, this is of great significance in clarifying the biological function of the ARF18 gene. By adopting the gene engineering technology, the expression quantity of the ARF18 gene can be increased or weakened, so as to regulate and control the rape seed, so that the balance between the three factors of the yield is facilitated, and therefore the purpose of increasing the yield is achieved.
Description
Technical field
The invention belongs to plant genetic engineering field.Specifically, the present invention relates to a kind of and rape grain heavy phase correlation gene ARF18 and application thereof.
Background technology
Along with the quick growth of population, global food shortage problem becomes increasingly severe.Therefore, it is badly in need of breaking through in terms of crop yield.As one of three factors affecting crop yield, grain weight has been widely regarded as the complicated quantitative trait of controlled by multiple genes.Extremely important for improving crop breeding efficiency to the heredity of grain principal characteristic shape and the parsing of molecular mechanism.
Seed size is affected by a series of cell processes.This impact derives from parents' effect and parent/zygote tissue (Fang et al., 2012).In model plant arabidopsis, some mutants such as ap2, arf2, da1, eod3, ttg2, klu etc. mainly extended by the cell of regulation and control seed coat control seed size (Fang et al., 2012;Ohto et al.,2005;Schruff et al.,2006;Garcia et al.,2005;Adamski et al., 2009), and in mini3, iku1, iku2 and shb1 mutant, endosperm seed development premature cell or increment in early days have impact on seed size (Garcia et al., 2003;Luo et al.,2005;Wang et al.,2010;Zhou et al.,2009;Kang et al., 2013) .met1 gene due in CG background the methylated disappearance of cytosine residues cause that seed size is had parents' effect (Feng et al., 2010).In Oryza sativa L., identified 47 seed length QTLs and 48 Kernel-Width QTLs (Bao, 2014), some regulation and control seed sizes gene such as GW2, GIF1, qSW5, GS3, GS5, GW8 and qGL3 be positioned (Song et al., 2007;Wang et al.,2008;Shomura et al.,2008;Weng et al.,2008;Mao et al.,2010;Li et al.,2011;Wang et al.,2012;Zhang et al.,2012).Wherein, GW2 and qSW5 affects grain weight by regulating coetonium hülle cell number, and other gene is then directly to regulate seed cell number or cell size to affect grain weight.Although grain heavily research obtains good progress, at present still without the new gene finding regulation and control grain weight in polyploid Brassica campestris L.
Polyploid is by monoploid polyploidization or the combination of two or more diversity gene groups, and the latter generally exists (Masterson, 1994) in flowering plant includes many important crops.Polyploid genome due on coloured differently body the existence of homologous sequence and homogenic interaction make QTL location more difficult.Such as cabbage type rape (AACC), the in the world second largest oil crop after Semen sojae atricolor, it is to be planted natural hybridization by Chinese cabbage and two ancestors of Caulis et Folium Brassicae capitatae.Chinese cabbage is A genome.A genome and the C genome similarity the highest (Rana et al., 2004) of Caulis et Folium Brassicae capitatae.Recent years, as the agricultural crops that the whole world is important, Brassica campestris L receives more and more attention.So far, the QTL closed despite more than 80 grain heavy phases is identified out, there is not been reported for concrete controlling gene (Quijada et al., 2006;Udall et al.,2006;Fan et al.,2010;Yang et al.,2012).
In the research of our early stage, the F2 segregating population utilizing zy72360 and R1 to build detects a grain weight main effect QTL being positioned on A9 chromosome, and its contribution rate is more than 30%.In the present invention, we are by building the grain weight controlling gene in NIL and sources group association analysis map based cloning A9 site.Wherein, ARF18 is as the candidate gene of regulation and control grain weight, and Land use models plant Arabidopsis thaliana and Brassica campestris L have made further functional analysis.
Summary of the invention
It is an object of the invention to there are provided a kind of and rape grain heavy phase correlation gene ARF18, its sequence is shown in SEQ ID NO:2.The protein of coding is shown in SEQ ID NO.3.
Another object of the present invention is to there are provided a kind of application with rape grain heavy phase correlation gene ARF18 in improving plant grain principal characteristic shape.
In order to realize foregoing invention purpose, the present invention uses techniques below measure:
One and rape grain heavy phase correlation gene ARF18, obtain in the following manner:
1. the NIL in a weight main effect QTL site builds
Parent zy72360 and R1 has significant difference in terms of grain principal characteristic shape.Carry out just positioning to grain principal characteristic shape QTL by F2 colony.Utilize Hybrids F1 and parent's continuous backcross 4 times, period utilize QTL linked marker combine phenotype carry out heredity prospect selection, utilize non-linked marker to carry out the assessment of genetic background simultaneously, from BC4F1 colony, obtain target QTL heterozygosis and the high QTL-NIL individual plant of genetic background response rate;BC4F1 is utilized to obtain BC4F2 for QTL-NIL segregating population for heterozygosis target QTL-NIL individual plant selfing.
2. the fine location in a weight main effect QTL site
Based on the primer that this interval is newly developed, we utilize NIL BC4F2 colony's shortening interval.According to the SNP information in interval, continue to shorten interval by PCR amplification. the distance interval in order to shorten QTL further, utilize 380 parts of sources group, develop and screen the labeled primer obtained in interval and carry out the association analysis between grain weight phenotype and genotype.According to linkage analysis and association analysis, we the most at last this deciding field to finding 7 genes within 50kb and in this region.
3. determine mutational site, it is thus achieved that candidate gene
According to rapeseed gene group sequence, we utilize zy72360 and R1 material to clone coding region and the upstream regulatory region of above-mentioned 7 genes, and alignment finds that wherein 4 genes exist SNP and In/Del.Wherein the variation of ARF18 gene is maximum, is classified as the candidate gene in regulation and control grain weight main effect QTL site.
The functional verification of 4.ARF18 gene
Land use models plant Arabidopsis thaliana is receptor, and overexpression ARF18 and allele thereof verify its function.Building overexpression vector, use the genetic transforming method of Agrobacterium EHA105 mediation, imported by overexpression vector in arabidopsis, last each gene obtains transgenic line about 30 strain of overexpression.Obtain the homozygous lines of transgenic line, investigate grain weight phenotype, finally found that the overexpression of ARF18 (shown in SEQ ID NO.2) can reduce seed weight.By the investigation of the arabidopsis homologous genes mutation type surface to this gene, find that the seed grain of mutant material heavily increases.This shows that the expression height of ARF18 can regulate and control the weight of plant seed.
Being finally obtained a kind of and rape grain heavy phase correlation gene ARF18, its sequence is shown in SEQ ID NO.2.
A kind of application with rape grain heavy phase correlation gene ARF18 in improving rape grain principal characteristic shape, including by biotechnology, suppresses the expression of ARF18 gene in Brassica campestris L, it is thus achieved that the seed grain of transgenic plant heavily increase.
The protection content of the present invention also includes; with the application in improving plant grain principal characteristic shape of the phytoprotein of protein homology shown in SEQ ID NO.3; plant will be suppressed in expression with the phytoprotein of protein homology shown in SEQ ID NO.3, it is thus achieved that the seed grain of transgenic plant heavily increase.
Term " transgenic plant " used in the present invention refers to the gene containing importing and gene expression that stably enhancer or inhibitor is imported generation can have the plant of specific biological character.The plant being previously mentioned in the present invention includes the cereal crops such as Oryza sativa L., Semen Tritici aestivi, Semen Maydis, also includes the industrial crops such as Brassica campestris L, Semen sojae atricolor, Cotton Gossypii, also includes the vegetable crops such as the Fructus Cucumidis sativi, the Fructus Lycopersici esculenti that grow summer, also includes arabidopsis.
Compared with prior art, the invention have the advantages that
Not yet navigating to grain readjustment control related gene at present in Brassica campestris L, the present invention can control rape grain weight by the ARF18 gene of map based cloning, and this molecular mechanism research that plant grain is resetted control will have great impetus.Although the gene order of ARF18 is disclosed in arabidopsis, but and do not know its concrete biological function, the Brassica campestris L ARF18 gene pairs rape grain of present invention clone heavily has significant regulating and controlling effect, and this is significant to the biological function illustrating ARF18 gene.The expression being improved or weakening ARF18 gene by technique for gene engineering can regulate and control the size of Semen Brassicae campestris, thus beneficially balance between yield three factor and then reach the purpose of volume increase.
Accompanying drawing explanation
The grain weight phenotype analytical of Fig. 1 two parent zy72360 and R1.
Grain weight QTL interval is foreshortened to 120kb by Fig. 2 NIL linkage analysis.
Fig. 3 sources group association analysis finds this QTL segment part labelling and grain principal characteristic shape pole significant correlation.
In Fig. 4 zy72360 and R1 material, the sequence difference of ARF18 gene compares.
Fig. 5 reduces seed weight from the overexpression in arabidopsis of the ARF18 in R1 material, and significantly changes from the gene overexpression in zy72360 without result in seed.
Fig. 6 arabidopsis ARF18 mutant seeds weight increases.
The expression vector of Fig. 7 ARF18RNAi converts R1 and causes the seed grain of transgenic line heavily to increase.
Detailed description of the invention
Generally according to normal condition such as Sambrook et al., molecular cloning: laboratory manual (New York:Cold Spring Harbor Laboratory Press, 1989), or Draper et al. (Blackwell Science Press, 1988) condition described in, or according to the condition proposed by agents useful for same manufacturer.
Embodiment 1:
The NIL in grain weight main effect QTL site builds
Parent cabbage type rape zy72360 and R1 (Hu Z, Hua W, Huang S, Yang H, Zhan G, Wang X, et al. (2012) Discovery of Pod Shatter-Resistant Associated SNPs by Deep Sequen cing of a Representative Library Followed by Bulk Segregant Analysis in Rapesee
D.PLoS ONE 7 (4): e34253.) there is in terms of grain principal characteristic shape significant difference (zy72360 be 5.53 ± 0.43g, R1 are 3.98 ± 0.51g) (Fig. 1).First, SW QTL is navigated between W236 and W239 by we by F2 colony.Utilize Hybrids F1 and parent's continuous backcross 4 times, period utilize QTL linked marker combine phenotype carry out heredity prospect selection, utilize non-linked marker to carry out the assessment of genetic background simultaneously, from BC4F1 colony, obtain target QTL heterozygosis and the high QTL-NIL individual plant of genetic background response rate;BC4F1 is utilized to obtain BC4F2 for QTL-NIL segregating population for heterozygosis target QTL-NIL individual plant selfing.This colony of field planting, 3800 individual plants of final acquisition.
Embodiment 2: the fine location in grain weight main effect QTL site
Based on the primer that this interval is newly developed, we utilize NIL BC4F2 colony, and this interval is foreshortened to the 147kb between W024 and W004.Utilize the SNP information within 147kb, continue to foreshorten to 120kb (Fig. 2) by interval by PCR amplification. the distance interval in order to shorten QTL further, utilize 380 parts of sources group, develop and screen the labeled primer obtained in 11 QTL intervals and carry out the association analysis between grain weight phenotype and genotype.Result shows that the labelling between SSR-72and SSR-89 shows significant relatedness (Fig. 3).According to linkage analysis and association analysis, we the most at last this deciding field within 50kb.
Embodiment 3:
Determine mutational site, it is thus achieved that candidate gene
According to rapeseed gene group sequence, design the both sides primer across upstream region of gene control region and gene regions and the gene coding region primer of amplifiable cDNA library, for expanding the corresponding sequence of candidate gene from Brassica campestris L.
3.1 rapeseed gene groups DNA and the extraction of total serum IgE
The extraction of DNA:
A.70% blade cleaned by (volume ratio) ethanol, weighs about 100mg
B. adding 600ul extraction buffer (0.2M Tris-Cl, 0.25NaCl, 25mM EDTA, 0.5%SDS, pH 7.5), room temperature is quickly ground.
C.1.5ml Ependorff pipe mesoscale eddies mixing 5-10s.
D.12000rpm, 25min, room temperature.Take supernatant, add equal-volume isopropanol ,-20 degrees Celsius of precipitates overnight.
E.12000rpm, 15min, room temperature.Add 70% ethanol 200ul foam washing DNA precipitation.
F.12000rpm, 15min, room temperature.Remove ethanol.It is inverted on napkin, treats that ethanol volatilization is clean.
G. add sterilized water 100ul dissolving and slightly put forward DNA precipitation.Its concentration is estimated with spectrophotometric determination or electrophoresis.
The extraction (TRIZOL TM Kit extracts RNA) of RNA
Liquid nitrogen grinding 100mg material
A. adding 1mlTRIZOL, room temperature (20-25 DEG C, lower same) places 5min.
B. adding 200ul chloroform, acutely vibrate 30s, and room temperature places 2min.
C.12000g, 15min, 4 DEG C, take supernatant in new pipe, add 500ul isopropanol, after mixing, room temperature places 15min.
D.12000g, 15min, 4 DEG C, removes supernatant, adds 1ml70% (anhydrous alcohol and the volume ratio of H2O) ethanol.
E.7500g, 7min, goes supernatant, air to be dried by 4 DEG C.
F.DEPC-H2O dissolves.
3.2 the amplification of genome sequence
With the genomic DNA of zy72360 and R1 as template, the upstream promoter control region of 7 genes of amplification and genome sequence.PCR response time and temperature are made as follows: 94 DEG C of 3min, 94 DEG C of 45s, 59 DEG C of 45s, 72 DEG C of 2min 30s, 30cycles, 72 DEG C 5min.
The amplification of 3.3 gene coding regions
For the amplification of coding region, first, the total serum IgE utilizing zy72360 and R1 carries out reverse transcription.The reverse transcription of cDNA the first chain uses RevertAid H Minus First Strand cDNA Synthesis Kit (Fermentas), operates and carries out with reference to used kit explanation.Carry out PCR amplification, PCR response time and temperature with cDNA for template and make as follows: 94 DEG C of 3min, 94 DEG C of 45s, 59 DEG C of 45s, 72 DEG C of 2min 30s, 30cycles, 72 DEG C 5min.
The extension increasing sequence of 3.4 above-mentioned acquisitions is compared between two parents, finds that the coding region of ARF18 exists larger difference (lost an exon in zy72360) (Fig. 4), is therefore classified as candidate gene and carries out transgenic functional verification.
Embodiment 4: the functional verification of candidate gene
The structure of 4.1 expression vectors and the conversion of arabidopsis
After the coding region sequence of ARF18 (shown in SEQ ID NO.2) and allele (shown in SEQ ID NO.1) thereof is connected with TOPO entry vector (invitrogen company), it is transformed in competent cell DH5 α (invitrogen company), grand enzyme element screens, with gene primer (upstream region of gene primer) amplification, vector primer (T7 primer) identifies that forward inserts clone, plasmid is recombinated with Pearleygate100 (invitrogen company) after preparation in a small amount, and be transformed in competent cell DH5 α, kanamycin screens, its Insert Fragment is identified with gene primer (downstream of gene primer) PCR through vector primer (35S starts word aligning primer).
The conversion process of arabidopsis:
Preparation of reagents
Osmotic medium (1L): 1/2xMurashige-Skoog;5% (mass ratio) sucrose;0.5 gram of MES;It is adjusted to pH5.7 with KOH;Add again: the 6-BA mother solution of 10 microlitre 1mg/ml;200 microlitre Silwet L-77
Step of converting
(1) prepare Agrobacterium (Agrobacterium tumefaciems GV3101) bacterium solution 10ml having converted corresponding plasmid, converting evening before that day, proceed to big bottle overnight incubation, within second day, take out agrobacterium liquid O.D600 when using and work as between 1.2 to 1.6.
(2) room temperature 5000rpm is centrifuged 15 minutes.
(3) abandon supernatant, Agrobacterium precipitation is suspended in the osmotic medium of respective volume, makes O.D600 about 0.8.
(4) whole plant is directly dipped to agrobacterium suspension 30s.
(5) lucifuge overnight incubation, then normally cultivates to knot.
The screening of 4.2 transgenic arabidopsis and checking
The screening of transformant
By the arabidopsis seed of vernalization in the Artificial Soil watering supersaturation PNS nutritional solution, and with on preservative film cover.Manual simulation natural conditions illumination two days later (illumination 16 hours, dark 8 hours), took off film after three days.
Artificial culture room condition: relative humidity 80%, constant temperature 20-240C, intensity of illumination 80-200umol/M2/S, periodicity of illumination is 8h dark 16h illumination cultivation.About one week, spray herbicide screening positive plant.
PCR identifies
(1) extraction of the transformed plant STb gene of PCR it is used for
A.70% blade cleaned by (volume ratio) ethanol, weighs about 100mg
B. adding 600ul extraction buffer (0.2M Tris-Cl, 0.25NaCl, 25mM EDTA, 0.5%SDS, pH 7.5), room temperature is quickly ground.
C.1.5ml Ependorff pipe mesoscale eddies mixing 5-10s.
D.12000rpm, 25min, room temperature.Take supernatant, add equal-volume isopropanol ,-20 degrees Celsius of precipitates overnight.
E.12000rpm, 15min, room temperature.Add 70% ethanol 200ul foam washing DNA precipitation.
F.12000rpm, 15min, room temperature.Remove ethanol.It is inverted on napkin, treats that ethanol volatilization is clean.
G. add sterilized water 100ul dissolving and slightly put forward DNA precipitation.Its concentration is estimated with spectrophotometric determination or electrophoresis.
H. with STb gene as template, PCR is carried out.
(2) PCR program
PCR reaction utilizes 35S promoter sequence and downstream of gene primer in plant expression vector [5 '-TCAGCCAGAGATCTGGATAG-3 '], and the time of reaction and temperature are made as follows:
94℃3min
94 DEG C of 45s,
59℃45s
72 DEG C of 2min 30s, 30cycles
72℃5min
Testing result shows, most of transformed plants all can amplify the electrophoretic band of expection size, and negative control does not then have, and shows to have contained in transgenic arabidopsis genome exogenous gene DNA fragmentation.
4.3 the phenotype of transgenic line is investigated
Homozygous lines to transgenic line carries out the investigation of grain weight phenotype, find that overexpression reduces the seed weight of partial transgenic strain from the ARF18 in R1 material, reduction amplitude is at about 10% (Fig. 5), overexpression is then the most consistent with wild type control from the ARF18 in zy72360 material, and seed weight does not has significant change.
By the investigation of arabidopsis homologous genes deletion mutation strain (commercial source: https: the //www.arabidopsis.org/) phenotype to this gene, find that the seed grain of mutant material heavily increases (Fig. 6).This shows that the expression height of ARF18 can regulate and control the weight of plant seed.
Embodiment 5:
The structure of Brassica campestris L ARF18 suppression expression vector and the conversion in Brassica campestris L
The vector construction that 5.1CaMV promoters driven ARF18 antisense RNA is expressed
ARF18 coding region sequence according to R1 material, design primer amplification partial coding region fragment (300bp) primer sequence is: ARF18RNAiF:5 '-atggcgaatgtagatggagatga-3 ', ARF18RNAiR:5 '-tgaagtctacgctcagatcacat/atgtgatctgagcgtagacttca-3 '.It is reversely connected on topo carrier and is recombinated in pEarleyGate100.Brassica campestris L is converted by vector to LBA4404 prepares.
5.2 the Agrobacterium LBA4404 of Brassica campestris L converts
A. the preparation of aseptic seedling: seed, through 70% ethanol 1min, after mercuric chloride (HgCl2) immersion 13-15min, ddH2O wash 5 times, is laid in MS culture medium (PH 5.8), agar concentration 0.8%.Brassica campestris L aseptic seedling is standby.
B. coleseed petiole converts: inoculation agrobacterium tumefaciens lba4404 is on solid medium LB, and picking list bacterium colony is cultivated in 50ml YEP fluid medium (tryptone 10g+ yeast extract 10g+NaCl5g+MgSO40.5g) two days later.Take 4-5 days aseptic seedling cotyledon petioles, in bacterium solution, soak 5-8min, therebetween jog, then go bacterium solution, suck residual bacterium solution in outer implant with aseptic filter paper.It is placed in and co-cultures base (MS+0.2mg/L 6-benzyladenine (6-BA)+1mg/L 2,4-dichlorphenoxyacetic acid (2,4-D)+200um acetosyringone (AS), PH5.8), upper cultivate 2-3 days.
C. the outer implant after co-culturing proceeds to containing only in the penicillin (Car) division culture medium without Kan, carries out de-bacterium and differentiation culture 5-7 days in the greenhouse of dark condition.Followed by generation at Selective agar medium (MS+3mg/L6-BA+0.1mg/L α-naphthaleneacetic acid (NAA)+5mg/L silver nitrate (the AgNO3)+400mg/L Car+15mg/L Kan adding Kan screening pressure;PH5.8) in, screen, regenerated green bud to be differentiated.
Cut budlet when bud length the most to be regenerated is to 1cm and move to root media (MS+0.2mg/L NAA+10mg/L Kan+400mg/L Car;PH5.8) on, with the solidified MS media screening adding Car Yu Kan.
E., after seedling rooting, it is transplanted into outdoor.Lower soil alms bowl is transplanted after 10 days.
Embodiment 6: the qualification of transformed plant
(1) extraction of the transformed plant STb gene of PCR it is used for
A.70% blade cleaned by ethanol, weighs about 100mg
B. adding 600ul extraction buffer (0.2M Tris-Cl, 0.25NaCl, 25mM EDTA, 0.5%SDS, pH 7.5), room temperature is quickly ground.
C.1.5ml Ependorff pipe mesoscale eddies mixing 5-10s.
D.12000rpm, 25min, room temperature.Take supernatant, add equal-volume isopropanol ,-20 degrees Celsius of precipitates overnight.
E.12000rpm, 15min, room temperature.Add 70% ethanol 200ul foam washing DNA precipitation.
F.12000rpm, 15min, room temperature.Remove ethanol.It is inverted on napkin, treats that ethanol volatilization is clean.
G. add sterilized water 100ul dissolving and slightly put forward DNA precipitation.Its concentration is estimated with spectrophotometric determination or electrophoresis.
H. with STb gene as template, PCR is carried out.
(2) PCR program
The cumulative volume of PCR reaction system is 20 μ l, genomic DNA template 1ul (about 50ng), 1 × Taq enzyme reaction buffer, 25mM MgCL2 1.2ul, each 0.2ul of 2mM dNTP 1.5ul, 10uM primer, 50% glycerol 2ul, 0.3 unit rTaq enzyme (Takara company), add ddH2O to 20 μ l.The PCR primer across intron is designed and synthesized according to genes of interest in plant expression vector.(forward primer: [5 '-CACGTCTTCAAAGCAAGTGGA-3 '] and reverse primer [5 '-atcagaaatatggtcagtcac-3 '], the time of reaction and temperature are made as follows: 94 DEG C of 3min, 94 DEG C of 45s, 59 DEG C of 45s, 72 DEG C of 2min 30s, 30cycles, 72 DEG C 5min.
Testing result shows, positive control and most of transformed plant all can amplify the electrophoretic band of expection size, and negative control does not then have, and shows to have contained in transgene rape genome exogenous gene DNA fragmentation.
Embodiment 7: T1 is carried out phenotype analytical for transgenic line
Gathering in the crops after Brassica campestris L ARF18RNAi transgenic line and comparison full maturity, Semen Brassicae campestris threshing is also fully dried and is weighed mass of 1000 kernel.Final result shows, compared with non-transgenic strain, partial transgenic strain seed weight increases, and maximum amplification is more than 15% (Fig. 7).
SEQUENCE LISTING
<110>Inst. of Oil Crops, Chinese Academy of Agriculture
<120>one and rape grain heavy phase correlation gene ARF18 and application thereof
<130>one and rape grain heavy phase correlation gene ARF18 and application thereof
<160> 3
<170> PatentIn version 3.1
<210> 1
<211> 1521
<212> DNA
<213>artificial sequence
<400> 1
atggcgaatg tagatggaga tgattccaga agttctttcc caagttgtta
tcaggatcag 60
ctgtacacag agctatggaa agcctgtgca ggtccattag tggaggttcc
tcttgttgga 120
gagagagttt tctacttccc tcagggtcac atggaacaac ttgtggcctc
aactaatcaa 180
ggaattgaat cagagaaaat acctgatttt aaacttcctc ccaagatact
ctgtcaagtt 240
cttagtgtga tgctaaaggc agagcatgac acagatgaag tctacgctca
gatcacatta 300
aaaccagagg aagatcaaag tgaaccaaca agtcttgatc caccaattgt
tgaaccaaca 360
aagcaaatgt tccactcttt tgtaaagatt ctaacagctt cagacacaag
cactcatgga 420
gggttctctg ttcttcgtaa acacgccact gaatgcttgc ctgccttgga
catgacacaa 480
gctactccta ctcaagaact tgtgactaga gatcttcatg ggtttgagtg
gaggtttaag 540
catattttca gaggacaacc taggaggcat ttgcttacta caggctggag
tacctttgtt 600
tcctcaaaaa gacttgtagc tggagatgct tttgtgttct tgaggataag
ccaattcata 660
gtaggtgtga acaagtatat ggaagctatg aagcatggtt tctctcttgg
tacaagattc 720
aggatgaagt ttgaaggaga agagtctcct gagagaatat ttaccggtac
tattgtggga 780
attggagatt tatcttcaca atggccagct tctacatgga gatcattgca ggtccaatgg
840
gatgagccaa caacagttca gagaccagac aaagtctcac catgggagat
tgagcctttc 900
ttgccatctt ccccagcttc aacaccttct caacaatcac aacccaaaag
caaaaggtca 960
aaacctgttg aatcatcaag tttgagtcca ggtcaagcta gtttcttagg
cgtccaagct 1020
gagcctcctc ctcctcctcc tcctgcgagt agttgctata ggttgtttgg
atttgatctc 1080
acaagcaatc ctccagctcc aatacctcca gacaagcaac cgatggatac
ttctgaagct 1140
gccaagtgtc aagaccccat cactccaagc tcagttaatg agccaaagaa
gcaacaaaca 1200
tcaaggactc gaaccaaagt gcaaatgcaa gggatagctg ttggtcgtgc
ggtagattta 1260
acgctgttga aatcatatga tgaactgatt aaggagcttg aggagatgtt
tgagatccaa 1320
ggacagcttc ttccccgaga taaatggatc gttgtcttca ctgatgatga
aggtgacatg 1380
atgcttgctg gagatgatcc atggaatgag ttttgtaaga tggcgaagaa
gatatttata 1440
tattcaagcg atgaggttaa gaaaatgaca aggagaatga agagttcttc
ttcgttagag 1500
aatgaagcaa gcatggatta
a
1521
<210> 2
<211> 1680
<212> DNA
<213>artificial sequence
<400> 2
atggcgaatg tagatggaga tgattccaga agttctttcc caagttgtta
tcaggatcag 60
ctgtacacag agctatggaa agcctgtgca ggtccattag tggaggttcc
tcttgttgga 120
gaaagagttt tctacttccc tcagggtcac atggaacaac ttgtggcctc
aactaatcaa 180
ggaattgaat cagagaaaat acctgatttt aaacttcctc ccaagatact
ctgtcaagtt 240
cttagtgtga tgttaaaggc agagcatgac acagatgaag tctacgctca
gatcacatta 300
aaaccagagg aagatcaaag tgaacctaca agtcttgatc caccaattgt
tgaaccaaca 360
aagcaaatgt tccactcctt tgtaaagatt ctaaccgctt cagacacaag
cactcatggt 420
ggattctctg ttcttcgtaa acacgccact gaatgcttgc ctgccttgga
catgacacaa 480
gctattccta ctcaagaact tgtgactaga gatcttcatg ggtttgagtg
gaggtttaag 540
catattttca gaggacaacc taggaggcat ttgcttacta caggctggag
tacatttgtt 600
tcctcaaaaa gacttgtagc tggagatgct tttgtgttct tgaggggtga
gaatggagat 660
ttaagagttg gagtgaggcg tttagctagg catcagaaca ccatgcctgc
ttcagttatc 720
tctagtcaga gcatgcattt aggagtcctt gctacagctt ctcatgctgt
gaacacccaa 780
actatgtttc ttgtgcttta caagcctagg ataagccaat tcatagtaag
tgtgaacaag 840
tatatggaag ctatgaagca tggtttctct cttggtacaa gattcaggat
gaggtttgaa 900
ggagaagagt ctcctgagag aatatttacc ggtactattg tgggaattgg
agatttatct 960
tcacaatggc cagcttctac atggagatca ttgcaggtcc aatgggatga
gccaacaaca 1020
gttcagagac cagacaaagt ctcaccatgg gagattgagc ctttcttgcc
atcttcccca 1080
gcttcaacac cttctcaaca atcacaaccc aaaagcaaaa ggtcaaaacc
cattgaatca 1140
tcaagtttga gtccaggtca agctagtttc ttaggcgtcc aagctgagcc
tcctcctcct 1200
cctgcgagta gttgctatag gttgtttgga tttgatctca caagcaatcc
tccagctcca 1260
atacctccag acaagcaacc gatggatact tctgaagctg ccaagtgtca
agaccccatc 1320
actccaagct cagttaatga gccaaagaag caacaaacat caaggactcg
aaccaaagtg 1380
caaatgcaag ggatagctgt tggtcgtgcg gtagatttaa cgctgttgaa
atcatatgat 1440
gaactgatta aggagcttga ggagatgttt gagatccaag gacagcttct
tccccgagat 1500
aaatggatcg ttgtcttcac tgatgatgaa ggtgacatga tgcttgctgg
agatgatcca 1560
tggaatgagt tttgtaagat ggcgaagaag atatttatat attcaagcga tgaggttaag
1620
aaaatgacaa ggagaatgaa gagttcttct tcgttagaga atgaagcaag
catggattaa 1680
<210> 3
<211> 559
<212> PRT
<213>artificial sequence
<400> 3
Met Ala Asn Val Asp Gly Asp Asp Ser Arg Ser Ser Phe Pro Ser Cys
1
5
10
15
Tyr Gln Asp Gln Leu Tyr Thr Glu Leu Trp Lys Ala Cys Ala Gly Pro
20
25
30
Leu Val Glu Val Pro Leu Val Gly Glu Arg Val Phe Tyr Phe Pro Gln
35
40
45
Gly His Met Glu Gln Leu Val Ala Ser Thr Asn Gln Gly Ile Glu Ser
50
55
60
Glu Lys Ile Pro Asp Phe Lys Leu Pro Pro Lys Ile Leu Cys Gln Val
65
70
75
80
Leu Ser Val Met Leu Lys Ala Glu His Asp Thr Asp Glu Val Tyr Ala
85
90
95
Gln Ile Thr Leu Lys Pro Glu Glu Asp Gln Ser Glu Pro Thr Ser Leu
100
105
110
Asp Pro Pro Ile Val Glu Pro Thr Lys Gln Met Phe His Ser Phe Val
115
120
125
Lys Ile Leu Thr Ala Ser Asp Thr Ser Thr His Gly Gly Phe Ser Val
130
135
140
Leu Arg Lys His Ala Thr Glu Cys Leu Pro Ala Leu Asp Met Thr Gln
145
150
155
160
Ala Ile Pro Thr Gln Glu Leu Val Thr Arg Asp Leu His Gly Phe Glu
165
170
175
Trp Arg Phe Lys His Ile Phe Arg Gly Gln Pro Arg Arg His Leu Leu
180
185
190
Thr Thr Gly Trp Ser Thr Phe Val Ser Ser Lys Arg Leu Val Ala Gly
195
200
205
Asp Ala Phe Val Phe Leu Arg Gly Glu Asn Gly Asp Leu Arg Val Gly
210
215
220
Val Arg Arg Leu Ala Arg His Gln Asn Thr Met Pro Ala Ser Val Ile
225
230
235
240
Ser Ser Gln Ser Met His Leu Gly Val Leu Ala Thr Ala Ser His Ala
245
250
255
Val Asn Thr Gln Thr Met Phe Leu Val Leu Tyr Lys Pro Arg Ile Ser
260
265
270
Gln Phe Ile Val Ser Val Asn Lys Tyr Met Glu Ala Met Lys His Gly
275
280
285
Phe Ser Leu Gly Thr Arg Phe Arg Met Arg Phe Glu Gly Glu Glu Ser
290
295
300
Pro Glu Arg Ile Phe Thr Gly Thr Ile Val Gly Ile Gly Asp Leu Ser
305
310
315
320
Ser Gln Trp Pro Ala Ser Thr Trp Arg Ser Leu Gln Val Gln Trp Asp
325
330
335
Glu Pro Thr Thr Val Gln Arg Pro Asp Lys Val Ser Pro Trp Glu Ile
340
345
350
Glu Pro Phe Leu Pro Ser Ser Pro Ala Ser Thr Pro Ser Gln Gln Ser
355
360
365
Gln Pro Lys Ser Lys Arg Ser Lys Pro Ile Glu Ser Ser Ser Leu Ser
370
375
380
Pro Gly Gln Ala Ser Phe Leu Gly Val Gln Ala Glu Pro Pro Pro Pro
385
390
395
400
Pro Ala Ser Ser Cys Tyr Arg Leu Phe Gly Phe Asp Leu Thr Ser Asn
405
410
415
Pro Pro Ala Pro Ile Pro Pro Asp Lys Gln Pro Met Asp Thr Ser Glu
420
425
430
Ala Ala Lys Cys Gln Asp Pro Ile Thr Pro Ser Ser Val Asn Glu Pro
435
440
445
Lys Lys Gln Gln Thr Ser Arg Thr Arg Thr Lys Val Gln Met Gln Gly
450
455
460
Ile Ala Val Gly Arg Ala Val Asp Leu Thr Leu Leu Lys Ser Tyr Asp
465
470
475
480
Glu Leu Ile Lys Glu Leu Glu Glu Met Phe Glu Ile Gln Gly Gln Leu
485
490
495
Leu Pro Arg Asp Lys Trp Ile Val Val Phe Thr Asp Asp Glu Gly Asp
500
505
510
Met Met Leu Ala Gly Asp Asp Pro Trp Asn Glu Phe Cys Lys Met Ala
515
520
525
Lys Lys Ile Phe Ile Tyr Ser Ser Asp Glu Val Lys Lys Met Thr Arg
530
535
540
Arg Met Lys Ser Ser Ser Ser Leu Glu Asn Glu Ala Ser Met Asp
545
550
555
Claims (6)
1. the protein separated, its sequence is shown in SEQ ID NO.3.
2. the nucleotide sequence of protein described in coding claim 1.
Nucleotide sequence the most according to claim 2, described sequence is shown in SEQ ID NO.2.
4. the protein described in claim 1 or the nucleotides sequence described in claim 2 are listed in the application improved in rape grain principal characteristic shape.
5. with the phytoprotein sequence of protein homology described in claim 1 in the application improved in plant principal characteristic shape.
Application the most according to claim 5, described plant is arabidopsis.
Priority Applications (1)
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CN201510381235.4A CN106317211A (en) | 2015-07-02 | 2015-07-02 | Rape grain weight related gene ARF 18 and application thereof |
Applications Claiming Priority (1)
Application Number | Priority Date | Filing Date | Title |
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CN201510381235.4A CN106317211A (en) | 2015-07-02 | 2015-07-02 | Rape grain weight related gene ARF 18 and application thereof |
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Publication Number | Publication Date |
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CN106317211A true CN106317211A (en) | 2017-01-11 |
Family
ID=57726939
Family Applications (1)
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CN201510381235.4A Pending CN106317211A (en) | 2015-07-02 | 2015-07-02 | Rape grain weight related gene ARF 18 and application thereof |
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CN (1) | CN106317211A (en) |
Cited By (5)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
CN108300801A (en) * | 2018-04-25 | 2018-07-20 | 西南大学 | The molecular labeling and application that a kind of and rape grain weight and Pod length are closely related |
CN111394362A (en) * | 2020-02-18 | 2020-07-10 | 杭州师范大学 | Gene for regulating and controlling seed development of solanaceae plant and application thereof |
CN114106129A (en) * | 2021-12-14 | 2022-03-01 | 中国农业科学院油料作物研究所 | Application of rape SWEET15 sugar transporter gene in improving rape yield |
CN114196660A (en) * | 2021-12-15 | 2022-03-18 | 中国农业科学院油料作物研究所 | Application of rape FC2 ferrous chelate enzyme gene in improving rape yield |
CN118324889A (en) * | 2024-06-13 | 2024-07-12 | 国际竹藤中心 | PheARF1.5 protein related to high regulation and control of phyllostachys pubescens stalk, coding gene and application |
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CN101962640A (en) * | 2010-05-04 | 2011-02-02 | 华中农业大学 | Specific molecular markers of related genes of brassica napus grain weight and application thereof |
CN102344927A (en) * | 2010-07-28 | 2012-02-08 | 中国科学院遗传与发育生物学研究所 | Gene BC14 for controlling mechanical strength and grain weight of rice stem, and application thereof |
CN104805179A (en) * | 2014-10-13 | 2015-07-29 | 中国农业科学院油料作物研究所 | Cabbage type rape grain weight-associated molecular marker and preparation method and application thereof |
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CN101962640A (en) * | 2010-05-04 | 2011-02-02 | 华中农业大学 | Specific molecular markers of related genes of brassica napus grain weight and application thereof |
CN102344927A (en) * | 2010-07-28 | 2012-02-08 | 中国科学院遗传与发育生物学研究所 | Gene BC14 for controlling mechanical strength and grain weight of rice stem, and application thereof |
CN104805179A (en) * | 2014-10-13 | 2015-07-29 | 中国农业科学院油料作物研究所 | Cabbage type rape grain weight-associated molecular marker and preparation method and application thereof |
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LIU,J等: "auxin response factor 18 [Brassica napus]", 《GENBANK数据库》 * |
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Cited By (8)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
CN108300801A (en) * | 2018-04-25 | 2018-07-20 | 西南大学 | The molecular labeling and application that a kind of and rape grain weight and Pod length are closely related |
CN108300801B (en) * | 2018-04-25 | 2021-11-16 | 西南大学 | Molecular marker closely related to rape grain weight and silique length and application |
CN111394362A (en) * | 2020-02-18 | 2020-07-10 | 杭州师范大学 | Gene for regulating and controlling seed development of solanaceae plant and application thereof |
CN114106129A (en) * | 2021-12-14 | 2022-03-01 | 中国农业科学院油料作物研究所 | Application of rape SWEET15 sugar transporter gene in improving rape yield |
CN114196660A (en) * | 2021-12-15 | 2022-03-18 | 中国农业科学院油料作物研究所 | Application of rape FC2 ferrous chelate enzyme gene in improving rape yield |
CN114196660B (en) * | 2021-12-15 | 2022-11-08 | 中国农业科学院油料作物研究所 | Application of rape FC2 ferrous chelate enzyme gene in improving rape yield |
CN118324889A (en) * | 2024-06-13 | 2024-07-12 | 国际竹藤中心 | PheARF1.5 protein related to high regulation and control of phyllostachys pubescens stalk, coding gene and application |
CN118324889B (en) * | 2024-06-13 | 2024-08-27 | 国际竹藤中心 | PheARF1.5 protein related to high regulation and control of phyllostachys pubescens stalk, coding gene and application |
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