CN106053848A - Kit for oculopathy detection and detection method - Google Patents

Kit for oculopathy detection and detection method Download PDF

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Publication number
CN106053848A
CN106053848A CN201610629367.9A CN201610629367A CN106053848A CN 106053848 A CN106053848 A CN 106053848A CN 201610629367 A CN201610629367 A CN 201610629367A CN 106053848 A CN106053848 A CN 106053848A
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sicam
aptamer
dna
seq
oculopathy
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李倩
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    • GPHYSICS
    • G01MEASURING; TESTING
    • G01NINVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
    • G01N33/00Investigating or analysing materials by specific methods not covered by groups G01N1/00 - G01N31/00
    • G01N33/48Biological material, e.g. blood, urine; Haemocytometers
    • G01N33/50Chemical analysis of biological material, e.g. blood, urine; Testing involving biospecific ligand binding methods; Immunological testing
    • G01N33/68Chemical analysis of biological material, e.g. blood, urine; Testing involving biospecific ligand binding methods; Immunological testing involving proteins, peptides or amino acids
    • GPHYSICS
    • G01MEASURING; TESTING
    • G01NINVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
    • G01N33/00Investigating or analysing materials by specific methods not covered by groups G01N1/00 - G01N31/00
    • G01N33/48Biological material, e.g. blood, urine; Haemocytometers
    • G01N33/50Chemical analysis of biological material, e.g. blood, urine; Testing involving biospecific ligand binding methods; Immunological testing
    • G01N33/68Chemical analysis of biological material, e.g. blood, urine; Testing involving biospecific ligand binding methods; Immunological testing involving proteins, peptides or amino acids
    • G01N33/6893Chemical analysis of biological material, e.g. blood, urine; Testing involving biospecific ligand binding methods; Immunological testing involving proteins, peptides or amino acids related to diseases not provided for elsewhere
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12NMICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
    • C12N15/00Mutation or genetic engineering; DNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purification; Use of hosts therefor
    • C12N15/09Recombinant DNA-technology
    • C12N15/11DNA or RNA fragments; Modified forms thereof; Non-coding nucleic acids having a biological activity
    • C12N15/115Aptamers, i.e. nucleic acids binding a target molecule specifically and with high affinity without hybridising therewith ; Nucleic acids binding to non-nucleic acids, e.g. aptamers
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12NMICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
    • C12N2310/00Structure or type of the nucleic acid
    • C12N2310/10Type of nucleic acid
    • C12N2310/16Aptamers
    • GPHYSICS
    • G01MEASURING; TESTING
    • G01NINVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
    • G01N2333/00Assays involving biological materials from specific organisms or of a specific nature
    • G01N2333/435Assays involving biological materials from specific organisms or of a specific nature from animals; from humans
    • G01N2333/46Assays involving biological materials from specific organisms or of a specific nature from animals; from humans from vertebrates
    • G01N2333/47Assays involving proteins of known structure or function as defined in the subgroups
    • GPHYSICS
    • G01MEASURING; TESTING
    • G01NINVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
    • G01N2333/00Assays involving biological materials from specific organisms or of a specific nature
    • G01N2333/435Assays involving biological materials from specific organisms or of a specific nature from animals; from humans
    • G01N2333/705Assays involving receptors, cell surface antigens or cell surface determinants
    • G01N2333/70503Immunoglobulin superfamily, e.g. VCAMs, PECAM, LFA-3
    • G01N2333/70525ICAM molecules, e.g. CD50, CD54, CD102
    • GPHYSICS
    • G01MEASURING; TESTING
    • G01NINVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
    • G01N2800/00Detection or diagnosis of diseases
    • G01N2800/04Endocrine or metabolic disorders
    • G01N2800/046Thyroid disorders
    • GPHYSICS
    • G01MEASURING; TESTING
    • G01NINVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
    • G01N2800/00Detection or diagnosis of diseases
    • G01N2800/16Ophthalmology

Abstract

The invention discloses an aptamer specially bonded with sICAM-1 and a kit. The provided aptamer has preferable affinity for sICAM-1 and can capture sICAM-1 in a solution. A kit prepared from the aptamer is used for screening oculopathy. The kit has characteristics of high sensitivity and low cost and is suitable for large-scale screening.

Description

A kind of test kit for detecting oculopathy and detection method thereof
Technical field
The present invention relates to a kind of test kit for detecting oculopathy and detection method thereof.
Background technology
Thyroid-associated ophthalmopathy (thyroid associated ophthalmopathy, TAO) is the common disease of department of endocrinology One of sick, also it is to treat one of disease the most difficult at present in the world.The TAO course of disease is longer, and each age group all can occur, with female Property is multiple.The lighter can affect life, work quality, damages appearance, and severe one may result in visual deterioration, the most blind, carries to patient Heavy economy and psychological burden are come.In recent years, due to living-pattern preservation, the increase of operating pressure, social environment shape The factors such as the change of condition, popularizing of edible iodized salt, and irregular medication, the sickness rate of TAO substantially rises, and admission rate is high. The brightest due to primary disease reason at present, clinical main with hormone, immunosuppressant, growth hormone analogs, antithyroid drug, socket of the eye The Comprehensive Treatments such as interior radiation, orbital decompression are main, but for various reasons, effect is the most unsatisfactory, there is no up to now and appoint TAO can effectively be treated by what a kind of medicine, and obtains long-term remission.Therefore, the medicine of research treatment thyroid-associated ophthalmopathy is urgently Solve the technical problem that.And detect the direction that described disease this area especially is actively studied.
Recent studies indicate that, the expression of intercellular adhesion molecule-1 and Autoimmune thyroid disease immunopathology Closely related.SICAM-1 and the sICAM-1 table of lymphocyte infiltration, endotheliocyte in the parathyroid tissue of thyroiditis patient Reach Showed Very Brisk.Additionally, it was found that increase with patients serum's sICAM-1 horizontal abnormality of expophthalmos, this is because after patient's eyeball Tissue strong expression sICAM-1, so the level that serum sICAM-1 raises is how closely related with socket of the eye week inflammatory infiltration degree.This Outward, research also finds, in the therapeutic process of medicine, and thyroid function and the improvement of clinical symptoms and Serum sICAM-1 Decline asynchronous, often the recovery of thyroid function to a great extent will be early than the recovery of sICAM-1.In sum, The concentration change of Soluble ICAM-1 is possibly for judging that the autoimmune disorder level of GD, drug withdrawal whether and are No recurrences etc. are significant.The expression of intercellular adhesion molecule-1 and thyroid-associated ophthalmopathy have direct correlation, therefore, and inspection Survey the expression of intercellular adhesion molecule-1, be used directly for identifying thyroid-associated ophthalmopathy.But traditional detection is thin The expression of ICAM-1 has operation complexity, time-consuming shortcoming.
Aptamer (Aptamer, also known as aptamers, aptamer) is can high-affinity, certain life of combination of high specific Thing leather El target strand widow's nucleic acid molecules (ssDNA or ssRNA).Aptamer is by index concentration Fas lignand system evolution technology (Systemat1c Evolut1on of L1gands by Exponent1al enr1chment, SELEX) is from synthetic What in DNA/RNA library, screening obtained can combine the single stranded DNA/RNA of target molecules by high degree of specificity.Report aptamer Target include metal ion, organic molecule, polypeptide, protein, cell even tissue etc..The molecular recognition merit of aptamer Can be similar with antibody, there is the target identification ability the most higher with antibody molecule, but have the most excellent compared with antibody Good characteristic, as molecular weight is little, can manufacture, not easy in inactivation, non-immunogenicity, be readily synthesized with labelling, quickly penetrate Between tissue, good dynamic metabolism, different batches, product does not haves difference and has fine chemical stability, at biology The fields such as detection, medical diagnosis on disease treatment have important application prospect.
Summary of the invention
It is an object of the invention to provide aptamer and the test kit thereof of a kind of specific bond sICAM-1.
The aptamer that the present invention provides, is the single stranded DNA shown in sequence 1-15 of sequence table.
Described aptamer and sICAM-1 albumen have preferable affinity.
Also described aptamer can be modified or transformed, obtain the derivant of described aptamer.
The derivant of described aptamer can be following any one:
A) described aptamer being deleted part or increases the nucleotide of partial complementarity, obtain has with described aptamer There is the derivant of the aptamer of identical function;
B) described aptamer carrying out nucleotide replacement or part is modified, obtain has identical with described aptamer The derivant of the aptamer of function;
C) transforming the skeleton of described aptamer as phosphorothioate backbone, obtain has phase with described aptamer The derivant of the aptamer of congenerous;
D) aptamer transform peptide nucleic acid(PNA) as, obtain has the aptamer of identical function with described aptamer Derivant;
E) after described aptamer being connected upper fluorescence, radioactivity and therapeutic substance, that obtain with described aptamer There is the derivant of the aptamer of identical function.
Described aptamer can be used for the test kit of preparation detection sICAM-1.
Utilize the aptamer of the present invention, the sICAM-1 in blood can be captured, thus sieve for thyroid-associated ophthalmopathy Look into.Utilize the aptamer of the present invention, part to replace monoclonal antibody capture sICAM-1 to detect, there is highly sensitive, cost Preparation low, easy, the advantage easily preserved.The present invention has the highest using value.
Detailed description of the invention
Below example facilitates a better understanding of the present invention, but does not limit the present invention.Experiment in following embodiment Method, if no special instructions, is conventional method.
Embodiment 1, the screening of aptamer and preparation
Two ends comprise about 20 nucleotide, centre includes that the random nucleic acid library of 39 nucleotide is as follows in design:
5’-ACGACTAACGTGTAACAG(N39)CAGTGCATGATGCTACGAA-3’;N39 represents 39 random nucleoside Acid.
Being double-stranded DNA by single-stranded DNA banks amplification, product is through 2% agarose gel electrophoresis and cuts glue recovery purification;To return The double-stranded DNA received is template, and in vitro transcription goes out single stranded RNA random library, and transcription product is through PAGE purification.75 μ g RNA library warps The anti-sieve of nitrocellulose filter removes the RNA molecule being combined with film, and then (by Chen Zhihong etc., people is thin with 2ug sICAM-1 albumen The eukaryotic cell expression of intercellular adhesion molecule-1 and the method disclosed in qualification, express the destination protein obtained), hatch for 37 DEG C 30min, reactant liquor filters through nitrocellulose filter, washs filter membrane;Then filter membrane is shredded, be placed in elution buffer (6mol/L Carbamide, 0.55mol/L ammonium acetate, l.5mmol/L EDTA, 0.15%SDS) in boil 5min, centrifugal, take supernatant, dehydrated alcohol Precipitation RNA, and be redissolved in 20 μ 1DEPC water;With RNA for template RT-PCR amplifying doulbe-chain DNA, in vitro transcription goes out RNA literary composition Storehouse is screened for next round;Often wheel screening process in RT-PCR obtain double-stranded DNA library, with this double-stranded DNA as template body outside turn Recording out RNA aptamer storehouse, screening carries out 10 altogether and takes turns.Having obtained 15 aptamers, its sequence is respectively SEQ ID NO:1-15 institute Show.Particular sequence is as follows:
SICAM-1-1:
ACGACTAACGTGTAACAGTCCAAGTATTCATACATACCATAAATTCATTGTCATTAACAGTGCATGATGCTACGAA (SEQ ID NO:1)
SICAM-1-2:
ACGACTAACGTGTAACAGCAGACACCATATATACTATCTACTACCACATACCTCTACCAGTGCATGATGCTACGAA (SEQ ID NO:2)
SICAM-1-3:
ACGACTAACGTGTAACAGCTAACTTCTTATAACTTAAGATACTTCTTCCAAACAACACAGTGCATGATGCTACGAA (SEQ ID NO:3)
SICAM-1-4:
ACGACTAACGTGTAACAGTACATCACTCTAATCTTCACGCCTCAGTTACATTCCCTTCAGTGCATGATGCTACGAA (SEQ ID NO:4)
SICAM-1-5:
ACGACTAACGTGTAACAGATGTATATTCCTTATATGACTATAATTCTTACCTATAAACAGTGCATGATGCTACGAA (SEQ ID NO:5)
SICAM-1-6:
ACGACTAACGTGTAACAGACCTCTATCTCACTCTTCCCTTTCGCCTACACATCCGAACAGTGCATGATGCTACGAA (SEQ ID NO:6)
SICAM-1-7:
ACGACTAACGTGTAACAGAGATTCACTAATATTTCTTCGCCTCGCCATACTTAAGATCAGTGCATGATGCTACGAA (SEQ ID NO:7)
SICAM-1-8:
ACGACTAACGTGTAACAGTACCCATCCACCTTCTTACTACTGCTCTCTCAATCTACACAGTGCATGATGCTACGAA (SEQ ID NO:8)
SICAM-1-9:
ACGACTAACGTGTAACAGACAGATACATTCATATCAAGTTACACATCTCCATGTTAACAGTGCATGATGCTACGAA (SEQ ID NO:9)
SICAM-1-10:
ACGACTAACGTGTAACAGCAGAACACAAATCTATACAAATCAGCATCACACTCATACCAGTGCATGATGCTACGAA (SEQ ID NO:10)
SICAM-1-11:
ACGACTAACGTGTAACAGATACCAATCGCCACCTACACTTACATCTAGACACTCTATCAGTGCATGATGCTACGAA (SEQ ID NO:11)
SICAM-1-12:
ACGACTAACGTGTAACAGTATCTACACATAGATCCTCCACTTAATAACAATCTGTCACAGTGCATGATGCTACGAA (SEQ ID NO:12)
SICAM-1-13:
ACGACTAACGTGTAACAGATACCTCATCAGATATTACATTCGCCAATATTTCTCTATCAGTGCATGATGCTACGAA (SEQ ID NO:13)
SICAM-1-14:
ACGACTAACGTGTAACAGTCTATAACGCCTAACTACACCACTCCACTCATTATAATACAGTGCATGATGCTACGAA (SEQ ID NO:14)
SICAM-1-15:
ACGACTAACGTGTAACAGATCTATTTCACCATTAAGAACCATATCGCATCACCCTTCCAGTGCATGATGCTACGAA (SEQ ID NO:15)
The performance measurement of embodiment 2 sICAM-1 protein binding aptamer
RNA aptamer taking 2.0 μ g respectively, digests lh with calf intestinal alkaline phosphatase (CIP) 37 DEG C, purification reclaims dephosphorization The RNA of acidifying;By T4 polynucleotide kinase labelling [γ-32P] ATP in dephosphorylized RNA molecule end.10nmol radiates Property labelling RNA aptamer sICAM-1 37 DEG C with variable concentrations (1-200nM) respectively hatch 30min, each group reactant liquor warp Nitrocellulose filter filters, and washs filter membrane, is dried filter membrane, and liquid scintillation counter measures the exit dose of residual, same sample on filter membrane Parallel do twice mensuration.Calculate the dissociation constant of each aptamer and sICAM-1.Result is as follows:
Title Dissociation constant Kd (unit nM)
sICAM-1-1 8.8
sICAM-1-2 8.9
sICAM-1-3 9.0
sICAM-1-4 7.9
sICAM-1-5 8.3
sICAM-1-6 8.2
sICAM-1-7 8.9
sICAM-1-8 9.3
sICAM-1-9 8.7
sICAM-1-10 8.1
sICAM-1-11 8.0
sICAM-1-12 9.4
sICAM-1-13 7.8
sICAM-1-14 8.6
sICAM-1-15 8.9
PBS blank Without binding ability
Aptamer specificity analyses and stability analysis described in embodiment 3
It is respectively adopted human albumin, immune globulin, vibrio cholera VgrG3C albumen, escherichia coli outer membrane protein A, Lp-PLA2 albumen, carries out specific detection with 15 aptamers, through binding tests find, these aptamers the most not with this A little albumen combine, and are only combined the specificity keeping higher with sICAM-1.
By described aptamer, take 0.2ug, be respectively placed in the serum of room temperature, aqueous solution, place two weeks.Pass through RT- PCR detects, and finds its Stability Analysis of Structures of placement of two weeks, is not degraded.
The diagnosis of aptamer disease described in embodiment 4
By 15 aptamers respectively with the blood mixing 30min of 10 Patients with Thyroid Associated Ophthalmopathies and normal person, logical Cross biotin to separate, the content of quantitative analysis sICAM-1 therein albumen, found by analysis, 10 thyroid-associated ophthalmopathies In patient, the content of sICAM-1 albumen dramatically increases relative to normal person.
These are only the preferred embodiments of the present invention, be not limited to the present invention, for those skilled in the art For Yuan, all any modification, equivalent substitution and improvement etc. done within the spirit and principles in the present invention, should be included in this Within the protection domain of invention.
Sequence table
< 110 > Li Qian
< 120 > mono-kind is for detecting test kit and the detection method thereof of oculopathy
〈160〉14
〈210〉1
〈211〉76
〈212〉DNA
< 213 > artificial sequence
< 400 > sICAM-1-1:
ACGACTAACGTGTAACAGTCCAAGTATTCATACATACCATAAATTCATTGTCATTAA CAGTGCATGATGCTACGAA
〈210〉2
〈211〉76
〈212〉DNA
< 213 > artificial sequence
< 400 > sICAM-1-2:
ACGACTAACGTGTAACAGCAGACACCATATATACTATCTACTACCACATACCTCTAC CAGTGCATGATGCTACGAA
〈210〉3
〈211〉76
〈212〉DNA
< 213 > artificial sequence
< 400 > sICAM-1-3:
ACGACTAACGTGTAACAGCTAACTTCTTATAACTTAAGATACTTCTTCCAAACAACA CAGTGCATGATGCTACGAA
〈210〉4
〈211〉76
〈212〉DNA
< 213 > artificial sequence
< 400 > sICAM-1-4:
ACGACTAACGTGTAACAGTACATCACTCTAATCTTCACGCCTCAGTTACATTCCCTT CAGTGCATGATGCTACGAA
〈210〉5
〈211〉76
〈212〉DNA
< 213 > artificial sequence
< 400 > sICAM-1-5:
ACGACTAACGTGTAACAGATGTATATTCCTTATATGACTATAATTCTTACCTATAAA CAGTGCATGATGCTACGAA
〈210〉6
〈211〉76
〈212〉DNA
< 213 > artificial sequence
< 400 > sICAM-1-6:
ACGACTAACGTGTAACAGACCTCTATCTCACTCTTCCCTTTCGCCTACACATCCGAA CAGTGCATGATGCTACGAA
〈210〉7
〈211〉76
〈212〉DNA
< 213 > artificial sequence
< 400 > sICAM-1-7:
ACGACTAACGTGTAACAGAGATTCACTAATATTTCTTCGCCTCGCCATACTTAAGAT CAGTGCATGATGCTACGAA
〈210〉8
〈211〉76
〈212〉DNA
< 213 > artificial sequence
< 400 > sICAM-1-8:
ACGACTAACGTGTAACAGTACCCATCCACCTTCTTACTACTGCTCTCTCAATCTACA CAGTGCATGATGCTACGAA
〈210〉9
〈211〉76
〈212〉DNA
< 213 > artificial sequence
< 400 > sICAM-1-9:
ACGACTAACGTGTAACAGACAGATACATTCATATCAAGTTACACATCTCCATGTTAA CAGTGCATGATGCTACGAA
〈210〉10
〈211〉76
〈212〉DNA
< 213 > artificial sequence
< 400 > sICAM-1-10:
ACGACTAACGTGTAACAGCAGAACACAAATCTATACAAATCAGCATCACACTCATAC CAGTGCATGATGCTACGAA
〈210〉11
〈211〉76
〈212〉DNA
< 213 > artificial sequence
< 400 > sICAM-1-11:
ACGACTAACGTGTAACAGATACCAATCGCCACCTACACTTACATCTAGACACTCTAT CAGTGCATGATGCTACGAA
〈210〉12
〈211〉76
〈212〉DNA
< 213 > artificial sequence
< 400 > sICAM-1-12:
ACGACTAACGTGTAACAGTATCTACACATAGATCCTCCACTTAATAACAATCTGTCA CAGTGCATGATGCTACGAA
〈210〉13
〈211〉76
〈212〉DNA
< 213 > artificial sequence
< 400 > sICAM-1-13:
ACGACTAACGTGTAACAGATACCTCATCAGATATTACATTCGCCAATATTTCTCTAT CAGTGCATGATGCTACGAA
〈210〉14
〈211〉76
〈212〉DNA
< 213 > artificial sequence
< 400 > sICAM-1-14:
ACGACTAACGTGTAACAGTCTATAACGCCTAACTACACCACTCCACTCATTATAATA CAGTGCATGATGCTACGAA
〈210〉15
〈211〉76
〈212〉DNA
< 213 > artificial sequence
< 400 > sICAM-1-15:
ACGACTAACGTGTAACAGATCTATTTCACCATTAAGAACCATATCGCATCACCCTTC CAGTGCATGATGCTACGAA

Claims (5)

1. the test kit for oculopathy detection, it is characterised in that: comprise aptamer.
2. test kit as claimed in claim 1, it is characterised in that: described aptamer is described in SEQ ID No:7.
3. the fit application in the test kit of preparation detection oculopathy described in SEQ ID No:7.
4. the test kit as described in claim 1-2, it is characterised in that: described oculopathy is thyroid-associated ophthalmopathy.
Apply the most as claimed in claim 3, it is characterised in that: described oculopathy is thyroid-associated ophthalmopathy.
CN201610629367.9A 2015-11-01 2015-11-01 Kit for oculopathy detection and detection method Withdrawn CN106053848A (en)

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CN201610628761.0A Withdrawn CN106199008A (en) 2015-11-01 2015-11-01 A kind of test kit for detecting oculopathy and detection method thereof
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CN201610628761.0A Withdrawn CN106199008A (en) 2015-11-01 2015-11-01 A kind of test kit for detecting oculopathy and detection method thereof
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Application publication date: 20161026