CN105158894A - Lens-free phase micro-tomography device based on color LED array illumination and image reconstruction method - Google Patents

Lens-free phase micro-tomography device based on color LED array illumination and image reconstruction method Download PDF

Info

Publication number
CN105158894A
CN105158894A CN201510631832.8A CN201510631832A CN105158894A CN 105158894 A CN105158894 A CN 105158894A CN 201510631832 A CN201510631832 A CN 201510631832A CN 105158894 A CN105158894 A CN 105158894A
Authority
CN
China
Prior art keywords
dimensional
led
plane
lens
tomography device
Prior art date
Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
Pending
Application number
CN201510631832.8A
Other languages
Chinese (zh)
Inventor
左超
陈钱
孙佳嵩
张佳琳
顾国华
张玉珍
冯世杰
胡岩
陶天阳
李加基
张良
孔富城
张敏亮
范瑶
林飞
Current Assignee (The listed assignees may be inaccurate. Google has not performed a legal analysis and makes no representation or warranty as to the accuracy of the list.)
Nanjing University of Science and Technology
Original Assignee
Nanjing University of Science and Technology
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Application filed by Nanjing University of Science and Technology filed Critical Nanjing University of Science and Technology
Priority to CN201510631832.8A priority Critical patent/CN105158894A/en
Publication of CN105158894A publication Critical patent/CN105158894A/en
Pending legal-status Critical Current

Links

Classifications

    • GPHYSICS
    • G02OPTICS
    • G02BOPTICAL ELEMENTS, SYSTEMS OR APPARATUS
    • G02B21/00Microscopes
    • G02B21/36Microscopes arranged for photographic purposes or projection purposes or digital imaging or video purposes including associated control and data processing arrangements
    • G02B21/365Control or image processing arrangements for digital or video microscopes
    • G02B21/367Control or image processing arrangements for digital or video microscopes providing an output produced by processing a plurality of individual source images, e.g. image tiling, montage, composite images, depth sectioning, image comparison
    • GPHYSICS
    • G02OPTICS
    • G02BOPTICAL ELEMENTS, SYSTEMS OR APPARATUS
    • G02B21/00Microscopes
    • G02B21/06Means for illuminating specimens
    • GPHYSICS
    • G02OPTICS
    • G02BOPTICAL ELEMENTS, SYSTEMS OR APPARATUS
    • G02B21/00Microscopes
    • G02B21/36Microscopes arranged for photographic purposes or projection purposes or digital imaging or video purposes including associated control and data processing arrangements
    • G02B21/361Optical details, e.g. image relay to the camera or image sensor
    • GPHYSICS
    • G06COMPUTING; CALCULATING OR COUNTING
    • G06TIMAGE DATA PROCESSING OR GENERATION, IN GENERAL
    • G06T11/002D [Two Dimensional] image generation
    • G06T11/003Reconstruction from projections, e.g. tomography
    • G06T11/005Specific pre-processing for tomographic reconstruction, e.g. calibration, source positioning, rebinning, scatter correction, retrospective gating

Abstract

The invention discloses a lens-free phase micro-tomography device based on color LED array illumination and an image reconstruction method thereof. The lens-free phase micro-tomography device comprises an LED array, a sample stage and a camera which are sequentially arranged to form an imaging system, wherein the LED array is placed at the bottom of the whole imaging system, a photosensitive surface of a central LED pixel of the LED array is placed on an optical axis of the whole imaging system, and image reconstruction is achieved by using the lens-free phase micro-tomography device. Without the aid of any imaging optical elements, the lens-free phase micro-tomography device simplifies system structure, reduces microscope size, and greatly reduces cost; the lens-free phase micro-tomography device can obtain refractive index tomography images of samples, thereby achieving marker-free ''true three-dimensional imaging'' of biological cell samples, and significantly improving flexibility and versatility of the microscope.

Description

Based on color LED matrix lamp without lens phase micro tomography device and image reconstructing method
Technical field
The invention belongs to optical microphotograph imaging technique, particularly a kind of based on color LED matrix lamp without lens phase micro tomography device and image reconstructing method.
Background technology
Optical microscope, since sixties the 17th century is used to biomedical observation, has been the core instrument of biomedical examination and analysb always.The appearance of phasecontrast microscope, differential interference phase-contrast microscope, fluorescent microscope, laser confocal microscope greatly facilitates the raising of life science level, they with higher resolution and image quality for medical diagnosis on disease, the early diagnosis of especially great malignant disease provides strong imaging evidence, becomes important tool indispensable in current clinical medicine.But these microscopic systems still based on the imaging mode of " being gained as seen ", do not make full use of the power of the modern signal processing equipment such as computing machine.What constantly reform along with function and performance in addition is that microscopic system itself is also increasingly expensive, heavy, complicated and be difficult to safeguard.Can under the prerequisite ensureing its image quality if just think, realize the volume miniaturization of microscopy apparatus, with low costization, easy and simple to handleization, greatly must reduce the threshold that medical treatment detects, for the area that resources supplIes is limited provides quick, cheap care diagnostic (point-of-caretest, POCT) instrument, early diagnosis that is anxious for poverty-stricken area, critically ill patient provides advantage with timely treatment.
Realize the volume miniaturization of microscopy apparatus, with low costization, easy and simple to handleization critical path be " without lens " (lens-free) and " unmarked " (label-free)." without lens " are as the term suggests be exactly do not adopt traditional optical lens to imaging of samples.As everyone knows, the most expensive in microscope parts are exactly take microcobjective as the optical element of representative.If illumination and imaging optical path can be simplified, abandon expensive heavy optical lens and realize without lens micro-imaging, must greatly reduce microscopical cost, simultaneously for the miniaturization of total system, lightweight provide more possibilities." unmarked " refers to and does not adopt any dyeing pre-service to sample, and relies on itself absorbed inside or refractive index difference (phase shift caused) to carry out imaging, and this can simplify the preparation process of sample greatly.Unmarked imaging is otherwise known as noninvasive imaging or non-intrusion type (invasive) imaging, because which obviating adverse effect that conventional fluorescent probe produces cytoactive (as the specificity of fluorescence probe, the photobleaching that strong exciting light causes and phototoxicity, and gene Pignus pignoris infects).For the undyed biological cell sample of major part, because of its weak absorbing at visible light wave range (water white transparency), so must by means of Phase imaging.Ze Nike phase contrast microtechnic and differential interference phase-contrast microtechnic are unmarked (qualitative) phase imaging method the most classical, but they cannot provide quantitative phase information, thus be not suitable for standardized analysis and diagnosis (not bright pine. phasecontrast microscope and interference microscope [M] Science Press, 1966.).By contrast, quantitative phase imaging technique can provide the quantitative phase determined by sample physical thickness and specific refractivity information due to it, has become unmarked micro imaging method ideal at present.Information optics, holography and to calculate the fast development of image optics be provide a feasible solution without lens and unmarked imaging in recent years: once the quantitative phase information of light field can be obtained, just can carry out the anti-diffraction of numerical value to light wave fields in a computer, realize " digital refocusing ", and without the need to any imaging len.In order to obtain quantitative phase information, method the most classical is exactly interference effect (as interfered micro-and the Digital holographic microscopy) (Ma Lihong by means of light wave, Wang Hui, Jin Hongzhen, Deng. the experimental study [J] of Digital holographic microscopy quantitative phase imaging. Chinese laser, 2012,39 (3): 209-215.).Though this mode eliminates imaging len, additionally introduce costliness, heavy LASER Light Source, thus do not have volume and the cost of effective reduction system.In addition interferometric method itself is to the rigors of measurement environment, and the speckle noise that high coherence light source is introduced also shows that it is not realize the ideal style without lens micro-imaging.
Summary of the invention
The object of the present invention is to provide a kind of based on color LED matrix lamp without lens phase micro tomography device and image reconstructing method thereof, not by means of any optical element, and carried out the three-dimensional chromatography micro-image of reconstruction of objects by the mode of post-processed.
The technical solution realizing the object of the invention is: a kind of based on color LED matrix lamp without lens phase micro tomography device, comprise the LED array, sample stage, the camera formation imaging system that set gradually, this LED array is placed in the bottom of whole imaging system, and the photosurface of the most central LED pixel of LED array is positioned on the optical axis of whole imaging system.
Based on the image reconstructing method realized without lens phase micro tomography device of color LED matrix lamp, step is as follows:
Step one: image acquisition, LED array, as the light source without lens microscope, lights wherein each LED pixel in turn, and the illuminating color of each LED pixel is respectively red/green/indigo plant lights successively, irradiates the image that collected by camera after sample is corresponding;
Step 2: for each LED pixel or each light angle, employing solves light intensity transmission equation and realizes phase recovery;
Step 3: by the plane of delineation COMPLEX AMPLITUDE U obtained under each LED pixel obtained in step 2 or each light angle zm(x, y), m=1,2 ..., M is mapped in the three-dimensional frequency spectrum of thing function;
Step 4: adopt the method for positive constraint iteration to recover the frequency spectrum of disappearance, after iteration completes, the three-dimensional article function f finally obtained n(x, y, z) is the refractive index tomographic map into object under test.
The present invention compared with prior art, its remarkable advantage: (1) is not such as, by means of any imaging optic element, microcobjective, tube lens etc.; Thus simplied system structure, reduce microscope volume, greatly reduce costs.(2) digital focus of sample can be realized flexibly, namely " first take pictures and focus on afterwards ", without the need to the mechanical condition function of complexity.(3) the refractive index tomographic map of sample can be obtained, thus realize unmarked " the true three-dimensional imaging " of biological cell sample, thus significantly improve microscopical dirigibility with multi-functional.Due to this three large advantage, this micro imaging method is expected to be used widely in various fields such as botany, zoology, cell biology, semiconductor, material science, nanometer technology, life science, medical diagnosiss.
Below in conjunction with accompanying drawing, the present invention is described in further detail.
Accompanying drawing explanation
Fig. 1 be the present invention is based on color LED matrix lamp without lens phase micro tomography schematic diagram of device.
Fig. 2 be the present invention is based on color LED matrix lamp without lens phase micro tomography image reconstructing method process flow diagram.
Fig. 3 is the refractive index tomographic map (x, y plane) obtained Parascaris equorum embryonated egg section reconstruct without lens phase micro tomography device that the present invention is based on color LED matrix lamp.
Fig. 4 is the refractive index tomographic map (x, z-plane) obtained Parascaris equorum embryonated egg section reconstruct without lens phase micro tomography device that the present invention is based on color LED matrix lamp
Fig. 5 is the refractive index chromatography three-dimensional visualization result obtained Parascaris equorum embryonated egg section reconstruct without lens phase micro tomography device that the present invention is based on color LED matrix lamp.
Embodiment
Composition graphs 1, the present invention is based on comprising without lens phase micro tomography device the LED array 1, sample stage 2, the camera 3 that set gradually and forming imaging system of color LED matrix lamp, this LED array 1 is placed in the bottom of whole imaging system, and the photosurface of the most central LED pixel of LED array 1 is positioned on the optical axis of whole imaging system.The axial distance L of sample stage 2 and LED array 1 is generally between 20mm-100mm.The distance z of camera 3 and sample stage 2 generally should much smaller than L, between 5 μm of-2mm.
LED array 1 is as microscopical lighting source, and it is redgreenblue LED array, and its typical wavelengths is ruddiness λ r=635nm, green glow λ g=525nm and blue light λ b=475nm.And the center of LED array 1 is on the optical axis of whole imaging system.In general, the LED number comprised in LED array 1 should more than 8 × 8, and between each LED pixel, center distance representative value is 3-10mm, the photosurface typical sizes 50-200 μm of each LED pixel.These parameters, the center distance comprised between the size of LED pixel and brightness, the wavelength of illumination and LED pixel can be known from producer's handbook or be obtained by measurement.In LED array 1, each LED pixel is all by realizing lighting separately, and its color must controlled (it be red/green/blue for namely can switching illuminating color at any time, and three illumination intensity will be controlled to strict conformance).This need adopt the hardware driving circuit matched, the specific implementation of hardware driving circuit has had many mature technologies, master controller can adopt (but being not limited to) single-chip microcomputer, ARM or programmable logic device (PLD) etc., concrete methods of realizing can reference: (Guo Baozeng, Deng Chun seedling. the LED display control system based on FPGA designs [J]. liquid crystal and display, 2010,25 (3): 424-428.)
The effect of sample stage 2 is carrying samples, and the axial distance L of itself and LED array 1 is generally between 20mm-100mm.Its best lateral orientation is adjustable, to make microscope can observe the zones of different of sample.The effect of camera 3 is taken through the image formed after sample light diffraction, and it can be colored or gray scale camera.The distance z of itself and sample stage 2 generally should much smaller than L, between 5 μm of-2mm (after parameter z, extended meeting is used here: the photosurface of z and camera 3 and the distance of sample stage 2).
Composition graphs 2, the present invention is based on color LED matrix lamp without lens phase micro tomography image reconstructing method, its step is as follows:
Step one: image acquisition.LED array 1, as the light source without lens microscope, lights wherein each LED pixel in turn, and the illuminating color of each LED pixel is respectively red/green/indigo plant lights successively, and after irradiating sample, camera 3 gathers corresponding image.If comprise M LED in whole LED array altogether, take M × 3 width image so altogether, be denoted as I zRm(x, y), I zGm(x, y), I zBm(x, y), m=1,2 ..., M, the wherein two-dimensional coordinate of (x, y) representative image plane, the image of subscript R, corresponding red/green/blue illumination wavelengths of G, B difference, subscript m represents the sequence number m=1 of LED pixel, and 2 ..., M.Wherein descend target z to represent this physical quantity and be positioned at the plane of delineation.It claims I below zRm(x, y), I zGm(x, y), I zBmthe plane of delineation R, G, B component light distribution that (x, y) is corresponding m LED pixel.Because the locus of each LED pixel is different, the light angle corresponding to it is also different.
Step 2: for each LED pixel (or each light angle), employing solves light intensity transmission equation and realizes phase recovery.In this step, for each LED pixel in LED array 1, by the plane of delineation R, G, B component light distribution I of LED pixel zRm(x, y), I zGm(x, y), I zBm(x, y) reconstructs corresponding PHASE DISTRIBUTION.Owing to comprising M LED in whole LED array altogether, this step will be carried out for M LED in fact respectively, namely (for each LED pixel, employing solves light intensity transmission equation, and to realize Phase Retrieve Algorithm completely the same, only has input picture to adopt corresponding I to amount to M time zRm(x, y), I zGm(x, y), I zBm(x, y), m=1,2 ..., M).
The detailed process of this step is:
The first step: by I zRm(x, y), I zGm(x, y), I zBm(x, y) three width image carry out registration, namely ensure their perfect alignment and measure-alike.Concrete registration Algorithm is not the key content of this patent, can adopt as cross-correlation, the existing techniques in realizing such as Fourier phase correlation method, here subscript m represents that this operation is carried out respectively for M LED, m=1,2 ... namely M amounts to M time, the image of subscript R, corresponding red/green/blue illumination wavelengths of G, B difference.
Second step: converse I zRm(x, y), I zGm(x, y), I zBmthe plane of delineation corresponding to (x, y) and the equivalent distances between object plane:
z G=z
z R = λ R λ G z G
z B = λ B λ G z G
Wherein z is the axial distance on sample range sensor surface.
3rd step: by the I after second step registration zRm(x, y), I zGm(x, y), I zBm(x, y) three width image carry out diff, obtain the axial differential of light intensity
[ ∂ I ∂ z ] m = ( Δz B ) 2 ( I z R m - I z G m ) - ( Δz R ) 2 ( I z B m - I z G m ) Δz R Δz B ( Δz B - Δz R ) ,
Wherein Δ z r=z r-z g, Δ z b=z b-z g
4th step: by the axial differential of light intensity with plot of light intensity as I (x, y)=I zGm(x, y), by solving light intensity transmission equation, obtains plane of delineation phase zm(x, y),
φ z m ( x , y ) = - k ▿ - 2 ▿ · [ I - 1 ( x , y ) ▿ ▿ - 2 [ ∂ I ( x , y ) ∂ z ] m ]
In formula inverse Laplace's operation symbol, for gradient operator, be vector dot, k is wave number, with operational symbol is all realized by Fourier transform, namely
▿ - 2 { · } = F - 1 { F { · } 1 - 4 π 2 ( u 2 + v 2 ) }
▿ { · } = F - 1 { j 2 π u F { · } , j 2 π v F { · } }
Wherein F represents Fourier transform, and (u, v) is the frequency domain coordinates corresponding with volume coordinate (x, y), and j is imaginary unit.Known image plane phase distribution phi m(x, y), plane of delineation COMPLEX AMPLITUDE U zm(x, y) just can obtain by down
U z m ( x , y ) = I z G m ( x , y ) exp [ jφ z m ( x , y ) ]
5th step: plane of delineation COMPLEX AMPLITUDE U zmthe distance of (x, y) " anti-spread "-z, thus just got back on the object plane at the place of object own, obtain the COMPLEX AMPLITUDE U on object plane m(x, y)
U zm(x,y)=F -1{F{U zm(x,y)}H -z(u,v)},
In formula, Fourier transform and inverse transformation are referred to as F and F respectively -1, (u, v) representative is relative to the frequency domain coordinates of (x, y); H -z(u, v) is angular spectrum transition function, and its form is
H - z ( u , v ) = exp [ - j 2 π z λ B 1 - ( λ u ) 2 - ( λ v ) 2 ]
λ in formula bfor the blue optical wavelength that throws light on, j is imaginary unit, here H -z-z in subscript represents the object plane at the distance arrival place of object of anti-spread-z own.
Step 3: by the plane of delineation COMPLEX AMPLITUDE U obtained under each LED pixel (or each light angle) obtained in step 2 zm(x, y), m=1,2 ..., M is mapped in the three-dimensional frequency spectrum of thing function.This step also can be subdivided into:
The first step: under Rytov is approximate, by the plane of delineation COMPLEX AMPLITUDE U obtained under each LED pixel (or each light angle) obtained in step 2 zm(x, y), m=1,2 ..., M is expressed as the approximate lower scattered field of Rytov
U s z m ( x , y ) = U z m ( x , y ) l n ( U z m ( x , y ) m e a n 2 { | U z m ( x , y ) | } )
Wherein the mean value of image is got in mean2{} representative, the approximate lower scattered field U of Rytov zmits two-dimensional Fourier transform of (x, y) is denoted as { U s zm(x, y) }
Second step: the approximate lower scattered field two-dimensional Fourier transform of the Rytov obtained under each LED pixel (or each light angle) obtained in the first step be mapped in the three-dimensional frequency spectrum of thing function according to the following rules:
F ~ ( K x , K y , K z ) = ik z π j U ~ z m s ( u , v , z = 0 )
In formula the three-dimensional Fourier transform (three-dimensional frequency spectrum) of thing function F, (K x, K y, K z) be the spatial frequency of object; The spatial frequency (u, v) of itself and scattered field and k zbetween pass be
K x=u-u x0,
K y=v-u y0,
K z=k z
Wherein u x0with u y0for the spatial frequency of illumination light.After this step, the three-dimensional frequency spectrum of thing function be filled, but due to LED number of pixels (light angle number) limited, still have subregion to lack.
Step 4: adopt positive constraint iteration method recover disappearance frequency spectrum: according to priori, when known sample refractive index be greater than around medium refractive index, thing function should f (x, y, z) should perseverance just be.Therefore adopt the method for following positive constraint iteration to recover the frequency spectrum of disappearance:
The first step: the three-dimensional frequency spectrum of thing function in initialization step three middle absent region is 0, is denoted by here the n comprised in subscript represents iterations, here initialization procedure n=0, is referred to as the three-dimensional frequency spectrum of revised thing function.
Second step: by the three-dimensional frequency spectrum of revised thing function ask three-dimensional inverse Fourier transform, obtain three-dimensional article function f n(x, y, z)
f n ( x , y , z ) = F - 1 { F ~ n ′ ( K x , K y , K z ) }
3rd step: by three-dimensional article function f nthe element assignment being less than 0 in (x, y, z) is 0, obtain revised three-dimensional article function f ' n(x, y, z).
4th step: by revised three-dimensional article function f ' n(x, y, z) remaps to frequency domain after carrying out three-dimensional Fourier transform, obtains the three-dimensional frequency spectrum of thing function
F ~ n ( K x , K y , K z ) = F { f n ( x , y , z ) }
5th step: by the three-dimensional frequency spectrum of original function the three-dimensional frequency spectrum of the thing function that middle absent region obtains by the 4th step corresponding region replaces.This completes the iterative process of one bout, and make n ← n+1, and get back to second step continue execution go down.Generally speaking, iteration is performed 20 times to 50 times by the second to the five step.
After iteration completes, the three-dimensional article function f finally obtained n(x, y, z) is the refractive index tomographic map of object under test.
In order to verify the imaging capability without lens microscope that the present invention is based on LED light source, we carry out without lens imaging to the section of Parascaris equorum embryonated egg.Fig. 3 reconstructs the refractive index tomographic map (x, y plane) obtained.The details of sample is high-visible, and its index distribution is between 1.34 to 1.42.Fig. 4 is the x of refractive index tomographic map, z-plane, can find out because sample is one deck slice, so cell is almost distributed between skim.Phase place chromatography lateral resolution is about about 3um, and axial resolution is at about 5um.Fig. 5 is refractive index chromatography three-dimensional visualization result.This result indicates the present invention can not realize high-quality refractive index tomographic map by any optical imaging lens, thus realizes unmarked " true three-dimensional imaging " micro-imaging of biological cell sample.

Claims (8)

1. one kind based on color LED matrix lamp without lens phase micro tomography device, it is characterized in that comprising the LED array (1), sample stage (2), camera (3) the formation imaging system that set gradually, this LED array (1) is placed in the bottom of whole imaging system, and the photosurface of the most central LED pixel of LED array (1) is positioned on the optical axis of whole imaging system.
2. according to claim 1 based on color LED matrix lamp without lens phase micro tomography device, it is characterized in that sample stage (2) is 20mm-100mm with the axial distance L of LED array (1), camera (3) is 5 μm of-2mm with the distance z of sample stage (2).
3. according to claim 1 based on color LED matrix lamp without lens phase micro tomography device, it is characterized in that LED array (1) is as microscopical lighting source, it is redgreenblue LED array, and wavelength is ruddiness λ r=635nm, green glow λ g=525nm and blue light λ b=475nm.
4., based on the image reconstructing method realized without lens phase micro tomography device of color LED matrix lamp, it is characterized in that step is as follows:
Step one: image acquisition, LED array (1) is as the light source without lens microscope, light wherein each LED pixel in turn, and the illuminating color of each LED pixel is respectively red/green/indigo plant lights successively, after irradiating sample, camera (3) gathers corresponding image;
Step 2: for each LED pixel or each light angle, employing solves light intensity transmission equation and realizes phase recovery;
Step 3: by the plane of delineation COMPLEX AMPLITUDE U obtained under each LED pixel obtained in step 2 or each light angle zm(x, y), m=1,2 ..., M is mapped in the three-dimensional frequency spectrum of thing function;
Step 4: adopt the method for positive constraint iteration to recover the frequency spectrum of disappearance, after iteration completes, the three-dimensional article function f finally obtained n(x, y, z) is the refractive index tomographic map into object under test.
5. the image reconstructing method realized without lens phase micro tomography device based on color LED matrix lamp according to claim 4, is characterized in that in step one, if comprise M LED in whole LED array altogether, takes M × 3 width image so altogether, be denoted as I zRm(x, y), I zGm(x, y), I zBm(x, y), m=1,2 ..., M, the wherein two-dimensional coordinate of (x, y) representative image plane, the image of subscript R, corresponding red/green/blue illumination wavelengths of G, B difference, m represents the sequence number m=1 of LED pixel, and 2 ... M, z represents this physical quantity and is positioned at the plane of delineation, i.e. the photosurface of camera 3 and the distance of sample stage 2, I zRm(x, y), I zGm(x, y), I zBmthe plane of delineation R, G, B component light distribution that (x, y) is corresponding m LED pixel.
6. the image reconstructing method realized without lens phase micro tomography device based on color LED matrix lamp according to claim 4, it is characterized in that in step 2, for each LED pixel in LED array (1), by the plane of delineation R, G, B component light distribution I of LED pixel zRm(x, y), I zGm(x, y), I zBm(x, y) reconstructs corresponding PHASE DISTRIBUTION, and detailed process is:
The first step: by I zRm(x, y), I zGm(x, y), I zBm(x, y) three width image carry out registration, namely ensure their perfect alignment and measure-alike, m represents that this operation is carried out respectively for M LED, m=1,2 ..., namely M amounts to M time, the image of subscript R, corresponding red/green/blue illumination wavelengths of G, B difference;
Second step: converse I zRm(x, y), I zGm(x, y), I zBmthe plane of delineation corresponding to (x, y) and the equivalent distances between object plane:
z G=z
z R = λ R λ G z G
z B = λ B λ G z G
Wherein z is the axial distance on sample range sensor surface;
3rd step: by the I after second step registration zRm(x, y), I zGm(x, y), I zBm(x, y) three width image carry out diff, obtain the axial differential of light intensity
[ ∂ I ∂ z ] m = ( Δz B ) 2 ( I z R m - I z G m ) - ( Δz R ) 2 ( I z B m - I z G m ) Δz R Δz B ( Δz B - Δz R )
Wherein Δ z r=z r-z g, Δ z b=z b-z g;
4th step: by the axial differential of light intensity with plot of light intensity as I (x, y)=I zGm(x, y), by solving light intensity transmission equation, obtains plane of delineation phase zm(x, y),
φ z m ( x , y ) = - k ▿ - 2 ▿ · [ I - 1 ( x , y ) ▿ ▿ - 2 [ ∂ I ( x , y ) ∂ z ] m ]
▽ in formula -2be inverse Laplace's operation symbol, ▽ is gradient operator, and be vector dot, k is wave number, ▽ and ▽ -2operational symbol is all realized by Fourier transform, namely
▿ - 2 { · } = F - 1 { F { · } 1 - 4 π 2 ( u 2 + v 2 ) }
▽{·}=F -1{j2πuF{·},j2πvF{·}}
Wherein F represents Fourier transform, and (u, v) is the frequency domain coordinates corresponding with volume coordinate (x, y), and j is imaginary unit; Known image plane phase distribution phi m(x, y), plane of delineation COMPLEX AMPLITUDE U zm(x, y) just can obtain by down
U z m ( x , y ) = I z G m ( x , y ) exp [ jφ z m ( x , y ) ]
5th step: plane of delineation COMPLEX AMPLITUDE U zmthe distance of (x, y) " anti-spread "-z, thus just got back on the object plane at the place of object own, obtain the COMPLEX AMPLITUDE U on object plane m(x, y)
U zm(x,y)=F -1{F{U zm(x,y)}H -z(u,v)},
In formula, Fourier transform and inverse transformation are referred to as F and F respectively -1, (u, v) representative is relative to the frequency domain coordinates of (x, y); H -z(u, v) is angular spectrum transition function, and its form is
H - z ( u , v ) = exp [ - j 2 π z λ B 1 - ( λ u ) 2 - ( λ v ) 2 ]
λ in formula bfor the blue optical wavelength that throws light on, j is imaginary unit, H -zthe subscript-z distance that represents anti-spread-z arrive the object plane at the place of object own.
7. the image reconstructing method realized without lens phase micro tomography device based on color LED matrix lamp according to claim 4, is characterized in that being realized by two steps in step 3, namely
The first step: under Rytov is approximate, by the plane of delineation COMPLEX AMPLITUDE U obtained under each LED pixel obtained in step 2 or each light angle zm(x, y), is expressed as the approximate lower scattered field of Rytov, m=1,2 ..., M:
U s z m ( x , y ) = U z m ( x , y ) l n ( U z m ( x , y ) m e a n 2 { | U z m ( x , y ) | } )
Wherein the mean value of image is got in mean2{} representative, the approximate lower scattered field U of Rytov zmits two-dimensional Fourier transform of (x, y) is denoted as U ~ z m s ( u , v ) = F { U s z m ( x , y ) } ;
Second step: the approximate lower scattered field two-dimensional Fourier transform of the Rytov obtained under each LED pixel obtained in the first step or each light angle be mapped in the three-dimensional frequency spectrum of thing function as follows:
F ~ ( K x , K y , K z ) = ik z π j U ~ z m s ( u , v , z = 0 )
In formula the three-dimensional Fourier transform of thing function F, (K x, K y, K z) be the spatial frequency of object; The spatial frequency (u, v) of itself and scattered field and k zbetween pass be
K x=u-u x0,
K y=v-u y0,
K z=k z
Wherein u x0with u y0for the spatial frequency of illumination light, after this step, the three-dimensional frequency spectrum of thing function be partially filled.
8. the image reconstructing method realized without lens phase micro tomography device based on color LED matrix lamp according to claim 4, is characterized in that being realized by five steps in step 4, namely
The first step: the three-dimensional frequency spectrum of thing function in initialization step three middle absent region is 0, is denoted by be referred to as the three-dimensional frequency spectrum of revised thing function, n represents iterations, initialization procedure n=0;
Second step: by the three-dimensional frequency spectrum of revised thing function ask three-dimensional inverse Fourier transform, obtain three-dimensional article function f n(x, y, z)
f n ( x , y , z ) = F - 1 { F ~ n ′ ( K x , K y , K z ) }
3rd step: by three-dimensional article function f nthe element assignment being less than 0 in (x, y, z) is 0, obtains revised three-dimensional article function
4th step: by revised three-dimensional article function remap after carrying out three-dimensional Fourier transform to frequency domain, obtain the three-dimensional frequency spectrum of thing function
F ~ n ( K x , K y , K z ) = F { f n ( x , y , z ) }
5th step: by the three-dimensional frequency spectrum of original function the three-dimensional frequency spectrum of the thing function that middle absent region obtains by the 4th step corresponding region replace, this completes the iterative process of one bout, and make n ← n+1, and get back to second step continue execution go down, after iteration completes, the three-dimensional article function f finally obtained n(x, y, z) is the refractive index tomographic map into object under test.
CN201510631832.8A 2015-09-29 2015-09-29 Lens-free phase micro-tomography device based on color LED array illumination and image reconstruction method Pending CN105158894A (en)

Priority Applications (1)

Application Number Priority Date Filing Date Title
CN201510631832.8A CN105158894A (en) 2015-09-29 2015-09-29 Lens-free phase micro-tomography device based on color LED array illumination and image reconstruction method

Applications Claiming Priority (1)

Application Number Priority Date Filing Date Title
CN201510631832.8A CN105158894A (en) 2015-09-29 2015-09-29 Lens-free phase micro-tomography device based on color LED array illumination and image reconstruction method

Publications (1)

Publication Number Publication Date
CN105158894A true CN105158894A (en) 2015-12-16

Family

ID=54799802

Family Applications (1)

Application Number Title Priority Date Filing Date
CN201510631832.8A Pending CN105158894A (en) 2015-09-29 2015-09-29 Lens-free phase micro-tomography device based on color LED array illumination and image reconstruction method

Country Status (1)

Country Link
CN (1) CN105158894A (en)

Cited By (16)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
CN105700124A (en) * 2016-04-13 2016-06-22 麦克奥迪实业集团有限公司 Microscope lighting system based on LED array
CN106127772A (en) * 2016-06-29 2016-11-16 陈漱文 The arrangement recognition methods of image conversion lamp battle array
CN106842540A (en) * 2017-03-24 2017-06-13 南京理工大学 Annular optical illumination high-resolution quantitative phase micro imaging method based on light intensity transmission equation
CN107065159A (en) * 2017-03-24 2017-08-18 南京理工大学 A kind of large visual field high resolution microscopic imaging device and iterative reconstruction method based on big illumination numerical aperture
CN107884919A (en) * 2017-09-30 2018-04-06 南京理工大学 Programmable LED array control system based on FPGA
CN108051930A (en) * 2017-12-29 2018-05-18 南京理工大学 Big visual field super-resolution dynamic phasing is without lens microscopic imaging device and reconstructing method
CN108169173A (en) * 2017-12-29 2018-06-15 南京理工大学 A kind of big visual field high-resolution three dimensional diffraction chromatography micro imaging method
CN108362651A (en) * 2018-01-26 2018-08-03 杭州炬像科技有限公司 A kind of portable no lens muti-spectrum imaging system and method
CN110989155A (en) * 2019-12-10 2020-04-10 青岛联合创智科技有限公司 Lens-free microscopic imaging device based on optical filter array and reconstruction method
CN111123495A (en) * 2020-01-18 2020-05-08 哈尔滨工业大学 Three-dimensional total internal reflection microscopic imaging device and method based on annular array light source illumination
CN111929881A (en) * 2020-08-06 2020-11-13 东南大学江北新区创新研究院 Phase object imaging device and method based on chromatic dispersion
CN113311682A (en) * 2021-05-08 2021-08-27 江苏大学 Lens-free coaxial digital holographic microparticle imaging system and method
CN114859543A (en) * 2022-05-20 2022-08-05 清华大学深圳国际研究生院 High-resolution lens-free microscope based on RGB LED light source
CN114967397A (en) * 2022-04-25 2022-08-30 上海交通大学 Lens-free holographic three-dimensional imaging construction method and device
US11487243B2 (en) 2019-10-18 2022-11-01 Imec Vzw Holographic imaging device and method
WO2024016774A1 (en) * 2022-07-19 2024-01-25 南京理工大学 Wavelength-scanning-based lensless fourier ptychographic diffraction tomography microimaging method

Citations (4)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
CN102508356A (en) * 2011-09-30 2012-06-20 浙江大学 Lensless microscopic imaging method based on optical projection and device thereof
US20140092229A1 (en) * 2009-06-16 2014-04-03 Lester F. Ludwig Small-profile lensless optical microscopy imaging and tomography instruments and elements for low cost and integrated microscopy
CN104344793A (en) * 2014-10-29 2015-02-11 南京理工大学 Single-frame light intensity transmission quantitative phase microscope system and method
CN104765138A (en) * 2015-04-17 2015-07-08 南京理工大学 Multi-mode micro-imaging system and method based on LED array

Patent Citations (4)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US20140092229A1 (en) * 2009-06-16 2014-04-03 Lester F. Ludwig Small-profile lensless optical microscopy imaging and tomography instruments and elements for low cost and integrated microscopy
CN102508356A (en) * 2011-09-30 2012-06-20 浙江大学 Lensless microscopic imaging method based on optical projection and device thereof
CN104344793A (en) * 2014-10-29 2015-02-11 南京理工大学 Single-frame light intensity transmission quantitative phase microscope system and method
CN104765138A (en) * 2015-04-17 2015-07-08 南京理工大学 Multi-mode micro-imaging system and method based on LED array

Non-Patent Citations (3)

* Cited by examiner, † Cited by third party
Title
CHAO ZUO: "Lensless phase microscopy and diffraction tomography with multi-angle and multi-wavelenth illuminations using a LED matrix", 《OPTICAL SOCIETY OF AMERICA》 *
潘哲郎: "用数字全息层析成像技术测量毛细管的内径及壁厚", 《光学精密工程》 *
马利红: "高精度数字全息显微衍射层析成像", 《光子学报》 *

Cited By (26)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
CN105700124B (en) * 2016-04-13 2018-04-06 麦克奥迪实业集团有限公司 A kind of microscope illumination system based on LED array
CN105700124A (en) * 2016-04-13 2016-06-22 麦克奥迪实业集团有限公司 Microscope lighting system based on LED array
CN106127772A (en) * 2016-06-29 2016-11-16 陈漱文 The arrangement recognition methods of image conversion lamp battle array
CN107065159B (en) * 2017-03-24 2019-10-18 南京理工大学 A kind of large visual field high resolution microscopic imaging device and iterative reconstruction method based on big illumination numerical aperture
CN106842540A (en) * 2017-03-24 2017-06-13 南京理工大学 Annular optical illumination high-resolution quantitative phase micro imaging method based on light intensity transmission equation
CN107065159A (en) * 2017-03-24 2017-08-18 南京理工大学 A kind of large visual field high resolution microscopic imaging device and iterative reconstruction method based on big illumination numerical aperture
US11156821B2 (en) 2017-03-24 2021-10-26 Nanjing University Of Science And Technology High-illumination numerical aperture-based large field-of-view high-resolution microimaging device and a method for iterative reconstruction
US11106029B2 (en) 2017-03-24 2021-08-31 Nanjing University Of Science And Technology Annular-irradiation high-resolution quantitative phase microimaging method using an annular illumination aperture
WO2018171383A1 (en) * 2017-03-24 2018-09-27 南京理工大学 Annular-irradiation high-resolution quantitative phase microimaging method based on light intensity transfer equation
CN107884919A (en) * 2017-09-30 2018-04-06 南京理工大学 Programmable LED array control system based on FPGA
CN108051930A (en) * 2017-12-29 2018-05-18 南京理工大学 Big visual field super-resolution dynamic phasing is without lens microscopic imaging device and reconstructing method
CN108051930B (en) * 2017-12-29 2020-05-22 南京理工大学 Large-view-field super-resolution dynamic phase lens-free microscopic imaging device and reconstruction method
CN108169173B (en) * 2017-12-29 2020-08-11 南京理工大学 Large-field high-resolution three-dimensional diffraction tomography microscopic imaging method
CN108169173A (en) * 2017-12-29 2018-06-15 南京理工大学 A kind of big visual field high-resolution three dimensional diffraction chromatography micro imaging method
CN108362651A (en) * 2018-01-26 2018-08-03 杭州炬像科技有限公司 A kind of portable no lens muti-spectrum imaging system and method
CN108362651B (en) * 2018-01-26 2021-07-16 绍兴柯桥睿宇光电科技有限公司 Portable lens-free multispectral microscopic imaging system and method
US11487243B2 (en) 2019-10-18 2022-11-01 Imec Vzw Holographic imaging device and method
CN110989155B (en) * 2019-12-10 2021-12-14 青岛联合创智科技有限公司 Lens-free microscopic imaging device based on optical filter array and reconstruction method
CN110989155A (en) * 2019-12-10 2020-04-10 青岛联合创智科技有限公司 Lens-free microscopic imaging device based on optical filter array and reconstruction method
CN111123495B (en) * 2020-01-18 2022-04-01 哈尔滨工业大学 Three-dimensional total internal reflection microscopic imaging device and method based on annular array light source illumination
CN111123495A (en) * 2020-01-18 2020-05-08 哈尔滨工业大学 Three-dimensional total internal reflection microscopic imaging device and method based on annular array light source illumination
CN111929881A (en) * 2020-08-06 2020-11-13 东南大学江北新区创新研究院 Phase object imaging device and method based on chromatic dispersion
CN113311682A (en) * 2021-05-08 2021-08-27 江苏大学 Lens-free coaxial digital holographic microparticle imaging system and method
CN114967397A (en) * 2022-04-25 2022-08-30 上海交通大学 Lens-free holographic three-dimensional imaging construction method and device
CN114859543A (en) * 2022-05-20 2022-08-05 清华大学深圳国际研究生院 High-resolution lens-free microscope based on RGB LED light source
WO2024016774A1 (en) * 2022-07-19 2024-01-25 南京理工大学 Wavelength-scanning-based lensless fourier ptychographic diffraction tomography microimaging method

Similar Documents

Publication Publication Date Title
CN105158894A (en) Lens-free phase micro-tomography device based on color LED array illumination and image reconstruction method
CN105182514B (en) Based on LED light source without lens microscope and its image reconstructing method
Ledwig et al. Quantitative 3D refractive index tomography of opaque samples in epi-mode
US20180348496A1 (en) Microscopy of a tissue sample using structured illumination
Ford et al. Fast optically sectioned fluorescence HiLo endomicroscopy
CN112130309B (en) Miniaturized, low-cost, many contrasts do not have mark microscopic imaging system
Li et al. Optical diffraction tomography microscopy with transport of intensity equation using a light-emitting diode array
Merola et al. Phase contrast tomography at lab on chip scale by digital holography
CN107850530A (en) Apparatus and method for the optical imagery of quantitative phase gradient linearity frequency modulation Wavelength-encoding
KR20210155397A (en) System and method for deep learning-based color holographic microscopy
Liu et al. Three-dimensional, isotropic imaging of mouse brain using multi-view deconvolution light sheet microscopy
WO2019151301A1 (en) Image processing method, program, and recording medium
McGinty et al. Fluorescence lifetime optical projection tomography
Delgado-Rodriguez et al. Innovations in ex vivo light sheet fluorescence microscopy
Lu et al. Rapid assessment of breast tumor margins using deep ultraviolet fluorescence scanning microscopy
Zhou et al. Accelerated Fourier ptychographic diffraction tomography with sparse annular LED illuminations
CN109407297A (en) A kind of multi-mode light field micro imaging method based on programmable LED array illumination
Štajduhar et al. 3d localization of neurons in bright-field histological images
Heintzmann et al. Reconstruction of axial tomographic high resolution data from confocal fluorescence microscopy: a method for improving 3D FISH images
Sokol et al. The Use of Digital Interferometry Devices to Analyze the State of Red Blood Cell Membranes
Sarri et al. Fast stimulated Raman imaging for intraoperative gastro-intestinal cancer detection
Costantini et al. A multimodal imaging and analysis pipeline for creating a cellular census of the human cerebral cortex
Bai et al. Absorption and phase decoupling in transport of intensity diffraction tomography
Ma et al. Light-field tomographic fluorescence lifetime imaging microscopy
Bozic et al. Structured illuminated microscopy virtual pathology for real-time large-specimen surgical pathology imaging using SYBR gold and eosin

Legal Events

Date Code Title Description
C06 Publication
PB01 Publication
C10 Entry into substantive examination
SE01 Entry into force of request for substantive examination
RJ01 Rejection of invention patent application after publication
RJ01 Rejection of invention patent application after publication

Application publication date: 20151216