The quick Purity method of Xian round-grained rice friendship type hybrid rice seeds
Technical field
The present invention relates to seed detection technique field, refer to especially a kind of quick Purity method of Xian round-grained rice friendship type hybrid rice seeds.
Background technology
Indica-Japonica Hybrid Rice is to utilize paddy rice indica-japonica hybrid to gather the good strong advantage Hybrid Rice Combinations of subspecies beneficial gene seed selection Comprehensive Traits, it is the strategic emphasis of China's breeding of hybridized rice research, our province grain aggregate will stablized, ensure grain ration safety, promote peasant's increasing both production and income to play a significant role.
Xian round-grained rice is handed in rice paddy seed and is contained much starch (65%-70%), protein (7%-9%) and fat (2%-3%), and the existence of these materials has affected the quality of the DNA directly extracting in seed to a great extent.Now traditional way is that seed is carried out to standard germination, waits seedling to grow to the DNA that extracts seed after a certain size in seedling leaves, and this method has extended the cycle of DNA extraction greatly, thereby has reduced rapidly and efficiently property of indoor molecular markers for identification seed purity.
Seed authenticity and purity are the core index of Seed Quality of Hybrid Rice, it is the main standard of seed quality classification, it is the key foundation of enterprise's purchase and sale seed, improved seeds impurity of seeds, purity drop will hinder giving full play to of the good heritability of kind, cause the obvious reduction of crop yield and quality, not only to having an immense impact on, also will cause heavy losses to country, government, peasant.Along with increasing and breeding material hereditary basis day by day narrow of crop Cultivars number, make interracial hereditary difference more and more less, cause the difficulty of variety authentication and Purity to continue to increase.Therefore, set up a set of easy, quick, economical, accurately variety authentication and Purity technical system be protection breeder intellecture property, hit fake and forged seed, standard Seed Market and promote that China's seed industry takes part in international competition in the urgent need to.DNA molecular marker has reflected the hereditary difference between biont on DNA level, has that quantity is abundant, polymorphism is high, not affected by environment, detects the advantage such as quick and be applied gradually (Li Zhaohua etc., 2006).Wherein, SSR (simple sequence repeat) mark, because polymorphism is good, repeatability is high, easy and simple to handle, is considered to the good DNA fingerprint technology of a kind of development prospect.SSR molecule marker is to equal by Moore a kind of molecule marker (Moore etc. based on specific primer PCR technology that create for 1989,1991), belong to codominant marker, there is rich polymorphism, simple to operate, the advantage such as reproducible, detected result accurately and reliably, reproducible, easy and simple to handle, quick, and not high to DNA quantity and specification of quality, be widely used in the aspects such as genetic map construction, the research of icp gene group, analysis of genetic diversity and Idioplasm identification, be one of at present most popular DNA fingerprinting technology.The application of SSR molecular marking technique in Purity Identification of Hybrid Rice Seeds, is applied among a small circle seed purity detection and puts into practice (Li Zhaohua etc., 2006).Peng Suotang etc. (2003) have carried out SSR evaluation with primer RM17 to Hybrid Rice Combination Shanyou 63 and two line system; Nandakumar etc. (2004) utilize SSR molecule marker successfully to build 4 rice varieties and parent's thereof finger printing, and successfully for the Purity of kind.Xiao little Yu etc. (2006) filter out from 208 pairs of primers that to have the primer 123 of polymorphism right, have set up the DNA fingerprint database of Sichuan Province's Main Parents of Hybrid Rice.This research has been carried out the optimization of technical system from aspects such as DNA extraction, PCR reaction system and program and gel electrophoresises, has set up the technical system of Rapid identification Xian round-grained rice friendship rice seed purity accurate, simple, quick, with low cost.
Summary of the invention
The present invention proposes a kind of quick Purity method of Xian round-grained rice friendship type hybrid rice seeds, solved the problem of seed authenticity and purity in prior art.
Technical scheme of the present invention is achieved in that
A kind of quick Purity method of Xian round-grained rice friendship type hybrid rice seeds, comprising:
(1) the direct extraction of seed DNA (without germinateing);
(2) pcr amplification reaction;
In the system of described PCR reaction, 1 pair of SSR primer has two kinds of selections, and a kind of Selective sequence is forward primer 5 '-CCAAAGATGAAACCTGGATTG-3 ' and reverse primer
5’-GCACAAGGTGAGCAGTCC-3’;
Another kind of Selective sequence is forward primer 5 '-CAAAAACAGAGCAGATGAC-3 ' and reverse primer 5 '-CTCAAGATGGACGCCAAGA-3 ';
(3) detected through gel electrophoresis;
(4) seed purity is calculated;
The seed that has father and mother's feature master tape concurrently is target seed, counting;
Calculation formula is as follows: examined seed lot seed purity (%)=examined and in seed, have Parent feature banding pattern seed number/examined seed sum × 100 concurrently.
As preferred technical scheme, the step of the direct extraction of described step (1) seed DNA is as follows: after handing over hybrid rice seeds to peel off bran shell Xian round-grained rice, put into centrifuge tube; Organizing the 30s that polishes on sample grinding machine; Successively add 400 μ l extracting solutions and 120 μ l5mol/L Potassium ethanoates; After mixing under 4 ℃ of environment standing 10-15min; The centrifugal 10min-15min of 12000rpm at 25 ℃; Get supernatant, successively add dehydrated alcohol 400 μ l and 3mol/L sodium-acetate 15 μ l; At 25 ℃, after the centrifugal 10min-15min of 12000rpm, remove supernatant; Add 400 μ l70% absolute ethanol washings; The centrifugal 4min-6min of 12000rpm at 4 ℃; Remove supernatant, after drying, add 100 μ l distilled waters to dissolve ,-20 ℃ of preservations.
As preferred technical scheme, described extracting solution is by 1mol/LTris-HCl, 5mol/LNaCl, and 10% sodium lauryl sulphate, 0.5mol/L quadrol tetrem disodium salt and distilled water form.
As preferred technical scheme, the concrete steps of described step (2) pcr amplification reaction are as follows: (DNApolymerasemixture, containing Taq enzyme, dNTP and Mg in 96 hole PCR plates, to put into respectively DNA profiling, Mixed mixed solution
2+deng), the 1 pair of SSR primer and distilled water; First 94 ℃ of sex change 3min; 94 ℃ of sex change 30s again, 55 ℃ of annealing 45s, 72 ℃ are extended 1min, 30 circulations; 72 ℃ are extended 5min, 4 ℃ of preservations.
As preferred technical scheme, the concrete steps of described step (3) detected through gel electrophoresis are as follows: mounting glass plate is on electrophoresis chamber; The glue configuring is shaken up, and encapsulating, inserts comb, waits the rear point sample of gelling knot; In electrophoresis chamber, add damping fluid, 110V, the about 2h of electrophoresis; After lower glue, gel is immersed in and in staining fluid, contaminates 10min; With distilled water flushing gel twice, 5min develops in developing solution; Rinse after twice of gel Taking Pictures recording in gel electrophoresis imaging system instrument with tap water.
As preferred technical scheme, in described electrophoresis chamber, damping fluid is 1 × TBE, by Tutofusin tris, boric acid and 0.5mol/L quadrol tetrem disodium salt, is mixed.
As preferred technical scheme, described glue is mixed by 5 × TBE, 40% acrylamide, 10% ammonium persulphate, Tetramethyl Ethylene Diamine, distilled water, and their mixed volume ratio is 8: 6: 0.3: 0.024: 26.
Accompanying drawing explanation
In order to be illustrated more clearly in embodiment of the present invention or technical scheme of the prior art, to the accompanying drawing of required use in embodiment or description of the Prior Art be briefly described below, apparently, accompanying drawing in the following describes is only embodiments more of the present invention, for those of ordinary skills, do not paying under the prerequisite of creative work, can also obtain according to these accompanying drawings other accompanying drawing.
Fig. 1 is indica-japonica hybrid paddy rice spring excellent 84 and parent's thereof key band.Wherein, numbering 1-4 is maternal key band (80bp), and numbering 5-28 is F1 seed characteristics bands of a spectrum (having Parent band 80bp and 120bp concurrently), and numbering 29-32 is male parent key band (120bp).
Embodiment
To the technical scheme in the embodiment of the present invention be clearly and completely described below, obviously, described embodiment is only the present invention's part embodiment, rather than whole embodiment.Based on the embodiment in the present invention, those of ordinary skills, not making the every other embodiment obtaining under creative work prerequisite, belong to the scope of protection of the invention.
Embodiment 1
A kind of quick Purity method of Xian round-grained rice friendship type hybrid rice seeds, comprising:
Step S1: DNA extraction in seed
1, by centrifuge tube numbering, from submitted sample, choose at random clean seed, put into respectively centrifuge tube, be sure not many of pipes or blank pipe;
2, add 400 μ lSDS extracting solutions, extracting solution is by 1MTris-Hcl60 μ l, 5MNacl40 μ l, and 10%SDS80 μ l, 0.5MEDTA80 μ l and distilled water 140 μ l mix;
3, organizing the 30s that polishes on sample grinding machine, add 120 μ l5MKac, shake up the quiet 10-15min that carries on ice bath or under 4 ℃ of environment;
4, the centrifugal 15min of 12000 turn/min at 25 ℃, gets supernatant;
5, add dehydrated alcohol 400 μ l, 3MNaAc15 μ l, the centrifugal 8min of 12000 turn/min at 25 ℃;
6, outwell gently liquid, add 400 μ l70% dehydrated alcohols to rock washing and stick to DNA and the mixtures of impurities on centrifuge tube;
7, the centrifugal 5min of 12000 turn/min at 4 ℃, outwells supernatant, and centrifuge tube is inverted on paper handkerchief and is dried;
8, add 100 μ l distilled water dissolving DNAs after drying, be placed in-20 ℃ of preservations.
Step S2:PCR amplified reaction
1, reaction system (10 μ l): in 96 hole PCR plates, put into respectively 1 μ lDNA template, 5 μ lMixed mixed solutions (DNApolymerasemixture, containing Taq enzyme, dNTP and Mg2+ etc.), 0.25 μ lSSR forward primer, 0.25 μ lSSR reverse primer and 3.5 μ l distilled waters.
2, primer sequence: forward primer 5 '-CCAAAGATGAAACCTGGATTG-3 ' and reverse primer 5 '-GCACAAGGTGAGCAGTCC-3 '; Another kind of Selective sequence is forward primer 5 '-CAAAAACAGAGCAGATGAC-3 ' and reverse primer 5 '-CTCAAGATGGACGCCAAGA-3 '.
3, amplification program: first 94 ℃ of sex change 3min; 94 ℃ of sex change 30s again, 55 ℃ of annealing 45s, 72 ℃ are extended 1min, 30 circulations; 72 ℃ are extended 5min, 4 ℃ of preservations.
Step S3: gel electrophoresis
1, with alcohol, firmly clean sheet glass, after being dried, assemble and be installed on electrophoresis chamber;
2, glue encapsulating: during the preparation of polyacrylamide gel, each piece glue glue is mixed by 4ml5 × TBE, 3ml40% acrylamide, 150 μ l10%APS, 12 μ lTEMED, 13ml distilled water.To after liquid mixing, shake up encapsulating immediately, polymerization time 40min to 1h;
3, in electrophoresis chamber, add 1 × tbe buffer liquid, point sample 1.5-2.5 μ l, 110V electrophoresis, approximately 2h;
4, silver dyes: gel is immersed in and is equipped with 0.2%AgNO
3shaking table in 10min, with distilled water rinse gel twice, then gel is immersed in developing solution (1.5%NaOH, 0.1% formaldehyde) and soaks 5min, with tap water rinse gel twice, Taking Pictures recording.
Step S4: seed lot purity is calculated
Obtain as stated above Xian japonica hybrid rice and parent's thereof feature electrophoretogram, the seed that has Parent feature master tape concurrently is target seed, counting, and calculated purity as follows: examined seed lot seed purity (%)=examined and in seed, have Parent feature banding pattern seed number/examined seed sum × 100 concurrently.
Its technique effect is: the present invention utilizes SDS rapid fractionation method directly from Xian round-grained rice, to hand over hybrid rice seed and extract DNA, then utilize a pair of SSR primer pair Xian round-grained rice to hand over Parent and first-filial generation seed DNA thereof to increase, and separate with polyacrylamide gel electrophoresis the first-filial generation complementary characteristic bands of a spectrum that obtain having concurrently Parent feature band.To thering is the seed number counting of this type of key band, and calculate seed lot purity.Through the Purity Fields of continuous 3 years, identify contrast, this method qualification result and field inspection result, without significant difference, refer to table 1.
Table 1
Batch number |
Purity Field qualification result % |
Indoor Purity result % |
1 |
98.4 |
97.3 |
2 |
98.6 |
98.5 |
3 |
97.8 |
97.3 |
4 |
98.6 |
98.9 |
5 |
98.6 |
96.8 |
6 |
99 |
98 |
7 |
99 |
100 |
8 |
99.6 |
99 |
9 |
99.4 |
100 |
10 |
99.4 |
98 |
11 |
97.8 |
97.6 |
12 |
98.8 |
97.9 |
13 |
97 |
95.8 |
14 |
95.6 |
95.7 |
15 |
99 |
99 |
16 |
98.8 |
98.5 |
17 |
99 |
98.9 |
18 |
96.9 |
96 |
19 |
99.4 |
98.3 |
20 |
99.6 |
99.2 |
21 |
100 |
99 |
On average |
98.6 |
98.1 |
As can be seen from Table 1, the indoor purity of most of batch is all a little less than Purity Field assay, and this may be because some hybrid strain phenotype and true plant are very approaching, artificial erroneous judgement cause.Through statistical study, result shows that indoor purity test result and field result are without significant difference.The consistence of two kinds of method of inspection results is described, this seed DNA rapid extraction and SSR molecule marker method of inspection are applicable to Xian round-grained rice and hand over the Purity of hybrid rice.
The present invention is applicable to Xian round-grained rice and hands over and directly extract DNA in hybrid rice seeds, and apply SSR molecule marker carry out verity and Purity accurately, simply, the method for inspection fast.
The foregoing is only preferred embodiment of the present invention, in order to limit the present invention, within the spirit and principles in the present invention not all, any modification of doing, be equal to replacement, improvement etc., within all should being included in protection scope of the present invention.