CN103484557A - Plasmid standard molecule applicable to real-time fluorescence quantification PCR (Polymerase Chain Reaction) detection of enterobacter sakazakii - Google Patents

Abstract

The invention discloses a plasmid standard molecule of enterobacter sakazakii, a preparation method and a quantification method of the plasmid standard molecule and applications thereof. An obtained standard substance is a plasmid standard molecule pXL04, wherein the sequence of the plasmid standard molecule pXL04 is represented by SEQ ID NO: 2 in a sequence table. According to the plasmid standard molecule of enterobacter sakazakii, the plasmid standard molecule pXL04 is quantified by using an ultraviolet spectrophotometric method and a high-resolution inductive coupling plasma emission mass spectrum (HR-ICP-MS) so as to ensure the good traceability. According to the plasmid standard molecule, the difficulty that the standard substances are lacked in real-time fluorescence quantification PCR detection of the enterobacter sakazakii is overcome; the comparability of a detection result of a real-time fluorescence quantification PCR detection method of the enterobacter sakazakii is ensured and a reliable quality control method is provided for the detection of the real-time fluorescence quantification PCR detection method of the enterobacter sakazakii.

Description

A kind of plasmid control molecule that is applicable to the detection of Enterobacter sakazakii real-time fluorescence quantitative PCR

Technical field

The present invention relates to a kind of plasmid molecule of technical field of bioengineering, be specifically related to a kind of plasmid control molecule and construction process, quantivative approach and application that the Enterobacter sakazakii real-time fluorescence quantitative PCR detects that be applicable to.

Background technology

Enterobacter sakazakii (Enterobacter sakazakii) is newfound a kind of pathogenic bacterium that cause extensive concern in recent years in milk-product.Since 1961, the case by this microbial neonatal meningitis, microbemia and necrotizing enterocolitis in world wide was in the news in succession, and Enterobacter sakazakii is used as a kind of important foodborne bacterial pathogens and receives publicity.Many parts of research reports have shown that infant formula powder is the main infection channel that current discovery causes baby and premature infant's meningitis, septicemia and necrotizing enterocolitis, and overall mortality rate is up to 80%, therefore caused the attention of the multinational relevant departments in the world.

At present the detection method of Enterobacter sakazakii is divided into two classes, and a class is traditional cultivation and improves one's methods, and depend on biochemistry and Morphological Characteristics, sense cycle is longer, poor operability; One class is polymerase chain reaction (polymerase chain reaction, PCR) methods involving, comprise regular-PCR method and real time fluorescent PCR method, mainly to be different from a plurality of target genes of other bacterium of enterobacteriaceae for Enterobacter sakazakii, select distinguished sequence, set up PCR and real time fluorescent PCR method.Enterobacter sakazakii PCR related detecting method development in recent years is rapid, due to its quick, sensitive, special characteristic, has become the reliable detection method of food borne pathogenic microorganism.

The plasmid DNA reference material is a kind of recombinant plasmid molecule of the specific fragment that contains the testing goal gene, can be used as positive control in the PCR qualitative detection, can be used as the standard substance of quantitative analysis in the PCR quantitative analysis, build the typical curve of quantitative analysis.Plasmid DNA molecule has obtained increasing further investigation and application as the reference material of gene test at present, but still blank for the plasmid DNA reference material of Enterobacter sakazakii real-time fluorescence PCR detection method.When actual Enterobacter sakazakii real-time fluorescence PCR, the plasmid DNA molecule that is mostly the designed, designed structure that constituent parts is used is as standard substance, goal gene specific fragment wherein is different, lack unified valued methods simultaneously, plasmid DNA molecule definite value poor accuracy, cause the detected result difference between each laboratory very big, lack comparability.

Summary of the invention

Technical problem to be solved by this invention is the problem that lacks positive criteria product and the configuration of positive criteria product in order to overcome in existing Enterobacter sakazakii real-time fluorescence PCR detection method, and a kind of the be applicable to plasmid control molecule of Enterobacter sakazakii real-time fluorescence PCR detection and construction process, quantivative approach and the application of this plasmid control molecule are provided.

Real-time fluorescence PCR detects the principle of Enterobacter sakazakii

But adopt synthetic (MMS) operon gene sequence of macromole in real-time fluorescence PCR technology specific amplification Enterobacter sakazakii genomic dna, design is for the primer of above target gene and the probe of two ends mark fluorescent, amplification assay sample DNA.Real-time fluorescence PCR can carry out Real-Time Monitoring PCR product by the increase that detects fluorescent signal.Meanwhile, with the positive criteria material (or positive criteria molecule) of identical primer, probe and condition amplification concentration known.In PCR method, positive criteria material (or positive criteria molecule) can be used as positive control; In real-time fluorescence PCR, positive criteria material (or positive criteria molecule) can build stable typical curve, can calculate respectively the absolute content (copy number or concentration) of corresponding gene in sample according to typical curve.

Reference material

Reference material is to have one or more enough all even fine characteristic values of having determined, in order to correcting device, estimates measuring method or to material or the material of material assignment.

Plasmid control molecule

Plasmid control molecule is a kind of recombinant plasmid molecule of the specific fragment that contains the testing goal gene, in the PCR qualitative detection, can be used as positive control, can be used as the standard substance of quantitative analysis in the PCR quantitative analysis, builds the typical curve of quantitative analysis.The advantage of plasmid molecule is mainly to cultivate in a large number by microorganism, and DNA is easy to amplification, thus the reference material of unlimited stable quantity can be provided, and purity is higher; And processing ease, stability is high, and same standard molecule can comprise a plurality of external source goal gene simultaneously, and economy is efficient again.

For solving the problems of the technologies described above, one of technical scheme that the present invention takes is: the plasmid control molecule of a kind of Enterobacter sakazakii, the macromole operon for synthesizing gene order that this plasmid control molecule comprises Enterobacter sakazakii, described macromole operon for synthesizing gene order is as shown in SEQ ID NO:1 in sequence table.

Plasmid control molecule of the present invention, preferably contain respectively synthetic (MMS) operon gene sequence of target gene macromole that the Enterobacter sakazakii fluorescent PCR detects.

Macromole described in the present invention synthesizes (MMS) operon gene, preferably by three gene: rpsU, dnaG and rpoD, formed, in DNA, RNA and protein synthetic, work, it can be used as a kind of target gene that Enterobacter sakazakii detects, and the sequence of described macromole operon for synthesizing gene is preferably as shown in SEQ ID NO:1.

The sequence of plasmid control molecule of the present invention is preferably as shown in SEQ ID NO:2, and wherein the 420th is the MMS gene order to the 739th.

For solving the problems of the technologies described above, two of the technical scheme that the present invention takes is: the quantivative approach of the plasmid control molecule of a kind of Enterobacter sakazakii as mentioned above, and it comprises the following steps:

1. extract plasmid control molecule;

2. according to step 1. based composition and the sequence length of the plasmid control molecule of gained, calculate the content of the phosphoric in plasmid control molecule;

3. prepare the phosphorus standardized solution of gradient concentration, and make the high resolution inductively coupled plasma with this standardized solution and launch mass spectral:mass spectrographic typical curve;

4. high resolution inductively coupled plasma emission mass spectrometric detection plasmid control molecule solution, and according to step 3. the typical curve of gained draw the phosphorus content of plasmid control molecule solution;

5. according to the 4. 2. content of the phosphoric in the plasmid control molecule of gained of the phosphorus content of the plasmid control molecule solution of gained and step of step, calculate the concentration of plasmid control molecule.

Wherein the condition of the described 3. high resolution of step inductively coupled plasma emission mass spectrometric detection is as follows: cooling gas flow is preferably 10L/min～25L/min, be 16.86L/min best, the assisted gas flow is preferably 0.5L/min～3.0L/min, be 0.88L/min best, the atomization gas flow is for being preferably 0.5L/min～1.5L/min, be more preferably 1.123L/min, power is preferably 1200W～1400W, is 1350W best.

The quantivative approach of plasmid control molecule of the present invention preferably comprises ultraviolet spectrophotometry and High resolution-inductive coupled plasma mass spectrometry (HR-ICP-MS).

Wherein ultraviolet spectrophotometry preferably comprises the following steps the plasmid control molecule quantivative approach:

1. extract plasmid control molecule;

2. with the TE damping fluid, ultraviolet spectrophotometer being proofreaied and correct is zero point;

3. get the needs of appropriate DNA(according to instrument) to cuvette (nanodrop directly puts at surveyed area), the recording instrumnet reading.。

If 4. can directly read direct record of DNA concentration; If can not, recording the optical density(OD) of sample at 260nm and 280nm, the concentration of DNA sample is OD260 * nucleic acid extension rate * 50, concentration unit is ng/ μ L.

(2) HR-ICP-MS preferably comprises the following steps the plasmid control molecule quantivative approach:

1. extract plasmid control molecule;

2. according to based composition and the sequence length of plasmid control molecule, calculate respectively the content of the phosphoric of each plasmid control molecule;

3. prepare the phosphorus standardized solution of gradient concentration, and make the typical curve of HR-ICP-MS with this standardized solution.

4. HR-ICP-MS detects plasmid control molecule, and draws the phosphorus content of plasmid control molecule according to typical curve.

5. calculate the concentration of plasmid control molecule according to the phosphorus content of plasmid control molecule.

For solving the problems of the technologies described above, three of the technical scheme that the present invention takes is: a kind of Enterobacter sakazakii real-time fluorescence quantitative PCR detection method, its accepted standard material is plasmid control molecule as above.

For solving the problems of the technologies described above, four of the technical scheme that the present invention takes is: the preparation method of the plasmid control molecule of a kind of Enterobacter sakazakii as above comprises the following steps:

1. the macromole operon for synthesizing gene order of synthetic Enterobacter sakazakii, described macromole operon for synthesizing gene order is as shown in SEQ ID NO:1 in sequence table;

2. by step 1. the macromole operon for synthesizing gene order of gained Enterobacter sakazakii be cloned on cloning vector, obtain the plasmid control molecule of Enterobacter sakazakii.

Wherein step 1. the method for described synthetic be preferably: the synthetic or method PCR primer amplification of full gene obtains this sequence.

Plasmid control molecule construction process of the present invention preferably comprises the following steps:

1. in the NCBI(U.S. state-run biotechnology information center) Genbank in the inquiry Enterobacter sakazakii the MMS gene;

2. above-mentioned sequence is analyzed, selected suitable sequence and suitable restriction enzyme site, and restriction enzyme site is added to 5 ' end and the 3 ' end of selected sequence.

3. the sequence after processing is carried out to the service of full gene synthetic, comprise the work such as synthetic, DNA fragmentation splicing of strand Oligo DNA, and full-length gene is cloned in plasmid vector, obtain plasmid control molecule.

Described plasmid vector can be any conventional carrier, preferably cloning vector, the cloning vector that more preferably can breed in intestinal bacteria, described cloning vector is preferably: pUC19, pUC18, pUC118, pUC119, pBlueScript II SK or pGEM serial carrier, be preferably the pUC19 cloning vector.

4. the sequence of sequence verification plasmid control molecule.

5. the real-time fluorescence PCR detection method of plasmid control molecule checking.

Described real-time fluorescence PCR detection method checking, refer to and detect plasmid control molecule carrying out the specificity of real-time fluorescence PCR while analyzing and building the characteristic such as typical curve ability, using and identify that this plasmid control molecule detects the ability of the reference material of Enterobacter sakazakii as real time fluorescent PCR method.

On the basis that meets this area general knowledge, above-mentioned each optimum condition, but arbitrary combination obtains the preferred embodiments of the invention.

Agents useful for same of the present invention and raw material be commercially available obtaining all.

Positive progressive effect of the present invention is: the present invention utilizes the method for full gene synthetic to build to contain respectively the Enterobacter sakazakii real-time fluorescence PCR to detect synthetic (MMS) operon gene sequence of target gene macromole, and utilize ultraviolet spectrophotometry and high resolution inductively coupled plasma emission mass spectrum (HR-ICP-MS) to carry out quantitatively, having guaranteed the traceability that it is good to it.It is strong that plasmid control molecule of the present invention has homogeneity, the advantage that stability is high, the invention solves the difficult problem that the Enterobacter sakazakii real-time fluorescence PCR detects the Plays material want simultaneously, guarantee the comparability of Enterobacter sakazakii real time fluorescent PCR method detected result, for the Enterobacter sakazakii real time fluorescent PCR method detects, provide quality control.

The accompanying drawing explanation

Fig. 1 is the collection of illustrative plates of plasmid control molecule pXL04 of the present invention.

Fig. 2 is gained plasmid control molecule pXL04 Detection of Stability of the present invention figure as a result.

Fig. 3 is the real-time fluorescence PCR typical curve that utilizes plasmid control molecule of the present invention to set up.

Embodiment

Mode below by embodiment further illustrates the present invention, but does not therefore limit the present invention among described scope of embodiments.The experimental technique of unreceipted actual conditions in the following example, according to ordinary method and condition, or select according to catalogue.

The structure of embodiment 1 plasmid control molecule

Experiment reagent and laboratory apparatus:

Plasmid extracts test kit (OMEGA) in a large number, and other biochemical reagents are import packing or domestic analytical pure biochemical reagents; Laboratory apparatus comprises whizzer, thermostat water bath, constant-temperature shaking incubator, liquid-transfering gun etc.

Experimental technique comprises the following steps:

1, synthetic (MMS) operon gene sequence of the gene macromole of search Enterobacter sakazakii in GenBank,

2, above-mentioned sequence is analyzed, selected suitable sequence and suitable restriction enzyme site, synthetic (MMS) operon gene sequence length of gene macromole is 319bp, and two ends add the BamHI restriction enzyme site;

3, sequence after processing is delivered to precious biotechnology (Dalian) company limited, be responsible for carrying out the service of full gene synthetic by it, comprise synthesizing of strand Oligo DNA, the work such as DNA fragmentation splicing, the sequence of synthetic (MMS) operon gene of gained gene macromole is as shown in SEQ ID NO:1 in sequence table, the gained full-length gene is cloned in plasmid vector pUC19, its sequence of plasmid control molecule pXL04(that the structure acquisition comprises the MMS gene order is as shown in SEQ ID NO:2 in sequence table), build the plasmid map of gained plasmid control molecule pXL04 as shown in Figure 1.

4, a large amount of cultivation contained the recombination bacillus coli that comprises gained plasmid control molecule pXL04, utilizes plasmid to extract in a large number test kit (OMEGA) and extracts plasmid, obtains highly purified plasmid control molecule pXL04.Carry out purity check through ultraviolet spectrophotometer and electrophoresis, the plasmid DNA standard molecule is placed in-20 ℃ of preservations afterwards, and the method for extracting plasmid comprises the following steps:

A, by the bacterium of 100～200mL incubated overnight in room temperature 5000 * g centrifugal 10 minutes, supernatant discarded;

B, add 12mL Solution I (containing RNase A), vibration fully mixes;

C, add 12mL Solution II, the gentleness that turns upside down mixes, and room temperature is placed 2 minutes so that the abundant cracking of thalline;

D, add 16mL Solution III, fully put upside down up and down immediately and mix for several times, until form uniform white precipitate;

E, >=12000 * g, 4 ℃ are centrifugal 10 minutes;

F, absorption 20mL supernatant move in a clean HiBind Maxi adsorption column (being placed in the 50mL collection tube) carefully, centrifugal 5 minutes of 5000 * g room temperature;

G, discard the liquid in collection tube, add 10mL Buffer HB to clean adsorption column, centrifugal 5 minutes of 5000 * g room temperature;

H, discard the liquid in collection tube, add the dilution of 15mL DNA Wash Buffer(dehydrated alcohol) clean adsorption column;

I, repeat above-mentioned cleaning step;

Centrifugal 15 minutes of j, 6000 * g are with dry adsorption column;

K, adsorption column is placed in to a clean 50mL pipe, adds 2mL～3mLTE damping fluid, room temperature is placed 1～2 minute, and within centrifugal 2 minutes, with eluted dna, the gained DNA solution is the plasmid control molecule solution of extraction to 8000 * g, is kept at-20 ℃.

5, sequence verification plasmid control molecule pXL04

The plasmid control molecule of extraction is delivered to eight order-checking companies and carry out the sequence checking, eight order-checking companies are respectively Beijing Liuhe Huada Genomics Technology Co., Ltd, Shanghai Bo Shang Bioisystech Co., Ltd, the English Weihe River prompt base (Shanghai) trade Co., Ltd, Shanghai Jie Li Bioisystech Co., Ltd, Shanghai Mei Ji Bioisystech Co., Ltd, Shanghai Sheng Gong Bioisystech Co., Ltd, Suzhou gold only intelligence bio tech ltd, precious biotinylated biomolecule Engineering Co., Ltd.For the plasmid DNA reference material, sequence length with direct relation is quantitatively arranged, it is for the requirement of definite value in Developments of certified reference samples that 8 different order-checking companies carry out sequencing.Refer to ISO guide rule 35, the specific requirement of reference material definite value part.

Sequence is investigated formula: sequence accuracy=correct base number/base sum

Sequencing result proves, the sequence accuracy that the unit of all participation sequences checkings obtains is 100%, and the 420th to the 739th in this plasmid sequence is synthesized (MMS) operon gene for the gene macromole.

Experimental result is: obtain highly purified plasmid control molecule pXL04 through sequence verification through steps such as sequence selection step, full gene synthetic step and a large amount of extractions of plasmid, this plasmid control molecule Insert Fragment sequence conforms to fully with design.

The uniformity testing of embodiment 2 plasmid control molecule pXL04

Homogeneity is to characterize structure that in material, one or more characteristics are relevant or the coherency state of composition.Take from Different Package unit (as bottle, bag etc.) or take from the sample of the prescribed level of same packaging unit different positions by measurement, measuring result drops in the regulation range of uncertainty, can think that this reference material is uniform to the characteristic quantity of appointment.Homogeneity is the base attribute of reference material, for the spatial distribution characteristic of description standard substance characteristics.Must carry out the homogeneity assessment in development (production) process of reference material, to prove it, there is good homogeneity.The plasmid control molecule had good uniformity, its value can not be subject to the impact of the factor such as packing, and the value difference between each bottle is little, has therefore guaranteed the reliability of detected result.

Experiment reagent TE damping fluid (pH7.5).Laboratory apparatus Nanodrops ND-2000.

Experimental technique:

1, according to " JJG1006-1994 primary standard material technical specifications " homogeneity draw samples requirement, from each plasmid DNA reference material, randomly draw 15 bottles.

2,, to get each sample sampling 3 times, each sampling amount is 1 μ L.Uv-spectrophotometric replication 3 times of each sampling amount, average.

3, measurement result is added up judgement uniformity testing result with the F method of inspection.Concrete grammar is: extract m sample, record under the same conditions m group equally accurate measurement data, if measure the variance there was no significant difference, should meet the statistical requirements of following formula.

$F=\frac{\frac{{\mathrm{<figure-callout\; id="1"\; label="Q"\; filenames="HDA0000396314070000012.png"\; state="\{\{state\}\}">Q</figure-callout>}}_1}{{\mathrm{\&nu;}}_1}}{\frac{{\mathrm{<figure-callout\; id="2"\; label="Q"\; filenames="HDA0000396314070000012.png,HDA0000396314070000021.png"\; state="\{\{state\}\}">Q</figure-callout>}}_2}{{\mathrm{\&nu;}}_2}}\&le;\left(F_{\mathrm{\&alpha;}}\right)({\mathrm{\&nu;}}_1,{\mathrm{\&nu;}}_2)$

Wherein between group, sum of squares of deviations calculation formula is:

${\mathrm{<figure-callout\; id="1"\; label="Q"\; filenames="HDA0000396314070000012.png"\; state="\{\{state\}\}">Q</figure-callout>}}_1=\underset{i=1}{\overset{m}{\mathrm{\&Sigma;}}}{n}_i{(\stackrel{\&OverBar;}{x_i}-\stackrel{=}{x})}^2$

In group, the sum of squares of deviations is calculated and is seen that formula is:

${\mathrm{<figure-callout\; id="2"\; label="Q"\; filenames="HDA0000396314070000012.png,HDA0000396314070000021.png"\; state="\{\{state\}\}">Q</figure-callout>}}_2=\underset{i=1}{\overset{m}{\mathrm{\&Sigma;}}}\underset{j=1}{\overset{\mathrm{nj}}{\mathrm{\&Sigma;}}}{(x_{\mathrm{ij}}-{\stackrel{\&OverBar;}{x}}_i)}^2$

ν ₁=m-1 (degree of freedom between group)

ν ₂=N-m (the group internal degree of freedom).

Experimental result:

1, plasmid control molecule pXL04 uniformity testing result is as shown in table 1

Table 1 plasmid control molecule pXL04 uniformity testing data (unit: ng/ μ L)

Sample	Repeat	1	Repeat 2	Repeat 3	Mean value
						1	52.3	51.5	52.7	52.2
2	51.2	51.7	50.9	51.3

4	52.7	51.5	52.1	52.1
					5	50.9	52.4	52.4	51.9
6	51.7	52.1	51.7	51.8
					7	51.2	51	51.3	51.2
8	52.7	51.4	51.2	51.8
					9	51.1	50.6	51.3	51.0
10	51.9	51.3	51.2	51.5
					11	50.8	50.8	50.8	50.8
12	51	51.9	50	51.0
					13	51.3	52.3	51.9	51.8
14	53.9	51.9	51.6	52.5
					15	52.9	51.4	50.9	51.7

The homogeneity statistics of table 2 plasmid control molecule pXL04

The plasmid DNA reference material	Q 1	Q 2	The F value	F 0.05(14，30)
					pXL04	10.3	13.9	1.59	2.04

The homogeneity statistics is in Table 2, and under 95% confidence level, the F value is less than F _0.05(14,30), prove that this plasmid control molecule pXL04 is that requirement evenly is up to the standards to meet " JJG1006-94 primary standard material technical specifications " uniformly.

The study on the stability of embodiment 3 plasmid control molecule pXL04

Stability refers to that the characteristic value of reference material remains on the ability in specialized range under the specific timed interval and storage requirement.Stability is the base attribute of reference material, for the time dependent character of the characteristic of description standard material, the i.e. Time-distribution of description standard substance characteristics.Must carry out stability assessment in the triturating of reference material.Stability assessment not only can be assessed the uncertainty of measurement relevant to stability of material, and storage and transport condition that can be clearly suitable.The plasmid control molecule had good stability, As time goes on its characteristic value can not change under suitable storage and transport condition, and detected result can not be subject to its instable impact, has guaranteed the reliability of detected result.

Experiment reagent TE damping fluid (pH7.5).Laboratory apparatus Nanodrops ND-2000.

Experimental technique:

Adopt classical stability study to be investigated the stability of plasmid control molecule, As time goes on the sample of preparation is measured under the same conditions simultaneously.

1,0th month after prepared by plasmid control molecule, 0.5 month, 1 month, 2 months, 3 months, 4 months, 6 months are randomly drawed 3 bottles to the plasmid control molecule (20 ℃ of preservations) of preparation, each sample replication 3 times, average, carry out the permanent stability investigation.This research has adopted ultraviolet spectrophotometry to carry out following the tracks of to plasmid control molecule and has investigated.

2, the Detection of Stability data are assessed judgement study on the stability result.Concrete investigation method is as follows:

Straight slope can calculate with following formula:

${\mathrm{\&beta;}}_1=\frac{\underset{i=1}{\overset{n}{\mathrm{\&Sigma;}}}(X_i-\stackrel{\&OverBar;}{X})(Y_i-\stackrel{\&OverBar;}{Y})}{\underset{i=1}{\overset{n}{\mathrm{\&Sigma;}}}{(X_i-\stackrel{\&OverBar;}{X})}^2}$

In formula: X _i---i time point; Y _i---the observed value of i time point;

---the mean value of all time points;

---the mean value of all observed values.

Intercept can be calculated by following formula:

${\mathrm{\&beta;}}_0=\stackrel{\&OverBar;}{Y}-{\mathrm{\&beta;}}_1\stackrel{\&OverBar;}{X}$

On straight line, the standard deviation of every can calculate with following formula:

${\mathrm{<figure-callout\; id="2"\; label="s"\; filenames="HDA0000396314070000012.png,HDA0000396314070000021.png"\; state="\{\{state\}\}">s</figure-callout>}}^2=\frac{\underset{i=1}{\overset{n}{\mathrm{\&Sigma;}}}{(Y_i-{\mathrm{\&beta;}}_0-{\mathrm{\&beta;}}_1{X}_i)}^2}{n-2}$

In formula: X _i---i time point; Y _i---the observed value of i time point; β ₁, β ₀---regression coefficient; N---measurement coefficient.

β ₁standard deviation by following formula, provided:

$s\left({\mathrm{\&beta;}}_1\right)=\frac{s}{\sqrt{\underset{i=1}{\overset{n}{\mathrm{\&Sigma;}}}{(X_i-\stackrel{\&OverBar;}{X})}^2}}$

Based on β ₁standard deviation, available t-detects and carries out judging: even | β ₁|<t _{0.95, n-2}s (β ₁), show that slope is not remarkable, do not observe unstable.

Experimental result:

1, plasmid control molecule pXL04 study on the stability result as shown in Table 3 and Figure 2:

The STABILITY MONITORING data of table 3 plasmid control molecule pXL04 (unit: ng/ μ L)

Time (moon)	Repeat 1	Repeat 2	Repeat 3	Mean value	SD
							0	52.20	51.30	52.10	51.87	0.49
0.5	50.60	51.90	50.90	51.13	0.68
						1	52.30	51.00	52.90	52.07	0.97
2	50.70	52.20	53.80	52.23	1.55
						4	50.73	51.30	51.80	51.28	0.53
6	51.70	50.40	52.10	51.40	0.89

Statistics is as shown in table 4.

The stability statistics of table 4 plasmid control molecule pXL04

The plasmid DNA reference material	β 1	β 0	s(β 1)	t 0.95,n-2·s(β 1)
					pXL04	-0.07	51.81	0.09	0.25

From statistics, it 6 months is stable that plasmid control molecule pXL04 preserves under-20 degree conditions.

Experimental example 4 use ultraviolet spectrophotometries are carried out quantitatively plasmid control molecule pXL04

Experiment reagent TE damping fluid (pH7.5).Laboratory apparatus Nanodrops ND-2000.

Experimental technique comprises the following steps:

1, with the TE damping fluid, ultraviolet spectrophotometer being proofreaied and correct is zero point;

2, get embodiment and prepare gained DNA solution 1 μ L, directly at surveyed area, the recording instrumnet reading;

3, directly read DNA concentration, concentration unit is ng/ μ L.

4, each sample test is eight times, averages.

Experimental result is: through the ultraviolet spectrophotometry definite value, the concentration of plasmid control molecule pXL04 is as shown in table 5:

Table 5 ultraviolet spectrophotometry definite value result (unit: ng/ μ L)

Plasmid	Repeat	1	2	3	4	5	6	7	8	Mean value	SD
												pXL04	52.2	51.3	52.1	51.3	51.3	51.5	52.3	51.3	51.7	0.45

Embodiment 5 use HR-ICP-MS carry out quantitatively plasmid control molecule pXL04

Experiment reagent is P standardized solution (NIST, SRM3139a).Laboratory apparatus is: inductively coupled plasma emission mass spectrograph (Thermofisher element2).

Experimental technique comprises the following steps:

1,, according to based composition and the sequence length of plasmid control molecule pXL04, calculate respectively the wherein content of phosphoric;

2, the HR-ICP-MS experiment parameter is: cooling gas flow 16.86L/min, and the atomization gas flow is 1.123L/min, the assisted gas flow is 0.99L/min, power 1350W.

3, prepare the phosphorus standardized solution (0,1,2,3,4,5 μ g/L) of gradient concentration, and make the typical curve of HR-ICP-MS with this standardized solution;

4, by 2000 times of plasmid control molecule pXL04 dilutions, HR-ICP-MS detects the plasmid control molecule after dilution, and draws the phosphorus content of the plasmid control molecule after dilution according to typical curve;

5, the concentration that the phosphorus content that basis records and extension rate calculate plasmid control molecule pXL04;

6, each sample test is eight times, averages.

Experimental result is: as calculated, the content of the phosphoric of plasmid control molecule pXL04 is 10.22%.Obtain plasmid control molecule phosphorus element content data through the HR-ICP-MS definite value as shown in table 6, extension rate is 2000, converts and obtains the mass concentration of plasmid molecule, as shown in table 7.

The phosphorus element content of table 6 plasmid control molecule pXL04 (unit: μ g/L)

The mass concentration result of table 7 plasmid control molecule pXL04 (unit: ng/ μ L)

The application of plasmid control molecule pXL04 in real-time fluorescence PCR detects of embodiment 6 developments

Experiment reagent: the primer and probe are synthetic by precious biotechnology (Dalian) company limited, and Master Mix is purchased from Life technology company.Laboratory apparatus comprises: real-time fluorescence quantitative PCR amplification instrument (Life technology) whizzer, thermostat water bath, incubator, day equality.

Shown in SEQ ID NO:3-SEQ ID NO:5, as shown in Table 8 below in the primer adopted in experiment and probe sequence sequence table.

The primer and the probe sequence that in table 8 experiment, adopt

The application of plasmid control molecule pXL04 in real-time fluorescence PCR detects

Adopt document " Rapid, specific detection of Enterobacter sakazakii in infant formula using a real-time PCR assay " (SEO K H, BRACKETT R E.Journal of Food Protection, 2005,68 (1): the primer 59-63.) (respectively as shown in SEQ ID NO:3 in sequence table and SEQ ID NO:4), probe, PCR detection system and reaction conditions, the plasmid control molecule pXL04 dilution that prepared by embodiment 1 to gained is the plasmid control molecule pXL04(3.36 of different concns * 10 ⁶copies/ μ L, 3.36 * 10 ⁵copies/ μ L, 3.36 * 10 ⁴copies/ μ L, 3.36 * 10 ³copies/ μ L, 3.36 * 10 ²copies/ μ L, 3.36 * 10 ¹copies/ μ L, 3.36 * 10 ⁰copies/ μ L) using the plasmid control molecule pXL04 of different concns respectively as template, carry out the real-time fluorescence PCR amplification according to the method in document.Each reacts triplicate, according to the Ct value of different concns template amplification and the relation between concentration, Criterion curve.

Experimental result

1, the application of plasmid control molecule pXL04 in real-time fluorescence PCR detects

Adopt described PCR detection system and reaction conditions, respectively with the plasmid control molecule pXL04(of different concns as 3.36 * 10 ⁶copies/ μ L, 3.36 * 10 ⁵copies/ μ L, 3.36 * 10 ⁴copies/ μ L, 3.36 * 10 ³copies/ μ L, 3.36 * 10 ²copies/ μ L, 3.36 * 10 ¹copies/ μ L, 3.36 * 10 ⁰copies/ μ L) set up the typical curve of real-time fluorescence PCR as standard substance.The typical curve of setting up is shown in Fig. 3, and relation conefficient reaches 0.994, linear good, shows that plasmid control molecule pXL04 is applicable to being applied to real-time fluorescence PCR and detects, and can be used as the positive criteria material of real-time fluorescence PCR amplification Enterobacter sakazakii MMS gene.When actual Enterobacter sakazakii detects, can utilize the good typical curve of this linearity, fluorescence PCR method detects the copy number of Enterobacter sakazakii specific gene in testing sample by experiment, and can, according to the copy number of Enterobacter sakazakii specific gene and the linear relationship between total plate count, converse the concrete number of Enterobacter sakazakii.Because the at present research and development for the reference material of Enterobacter sakazakii real-time fluorescence PCR detection method are still blank, when actual Enterobacter sakazakii PCR in real time detects, the plasmid DNA molecule that is mostly the designed, designed structure that constituent parts is used is as standard substance, goal gene specific fragment wherein is different, lack unified valued methods simultaneously, plasmid DNA molecule definite value poor accuracy, cause the detected result difference between each laboratory very big, lacks comparability, validity and reliability.Therefore, this plasmid standard molecule can solve a difficult problem that lacks reference material when real-time fluorescence PCR detects Enterobacter sakazakii, be applicable to the real time fluorescent PCR method of multiple amplification Enterobacter sakazakii MMS gene, guarantee the comparability of detected result, for the Enterobacter sakazakii real time fluorescent PCR method detects, provide the biometric technology support.

Should be understood that, after having read foregoing of the present invention, those skilled in the art can make various changes or modifications the present invention, these equivalent form of values fall within the application's appended claims limited range equally.

Claims (10)

1. the plasmid control molecule of an Enterobacter sakazakii, is characterized in that, the macromole operon for synthesizing gene order that this plasmid control molecule comprises Enterobacter sakazakii, and described macromole operon for synthesizing gene order is as shown in SEQ ID NO:1 in sequence table.

2. the plasmid control molecule of an Enterobacter sakazakii, is characterized in that, the sequence of this plasmid control molecule is as shown in SEQ ID NO:2 in sequence table.

3. the quantivative approach of the plasmid control molecule of Enterobacter sakazakii as claimed in claim 1 or 2, is characterized in that, it comprises the following steps:

1. extract plasmid control molecule;

2. according to step 1. based composition and the sequence length of the plasmid control molecule of gained, calculate the content of the phosphoric in plasmid control molecule;

3. prepare the phosphorus standardized solution of gradient concentration, and make the high resolution inductively coupled plasma with this standardized solution and launch mass spectral:mass spectrographic typical curve;

4. high resolution inductively coupled plasma emission mass spectrometric detection plasmid control molecule solution, and according to step 3. the typical curve of gained draw the phosphorus content of plasmid control molecule solution;

5. according to the 4. 2. content of the phosphoric in the plasmid control molecule of gained of the phosphorus content of the plasmid control molecule solution of gained and step of step, calculate the concentration of plasmid control molecule.

4. the quantivative approach of the plasmid control molecule of Enterobacter sakazakii as claimed in claim 3, it is characterized in that, the step 3. condition of described high resolution inductively coupled plasma emission mass spectrometric detection is: cooling gas flow is 10L/min～25L/min, the assisted gas flow is 0.5L/min～3.0L/min, the atomization gas flow is 0.5L/min～1.5L/min, and power is 1200W～1400W.

5. the quantivative approach of the plasmid control molecule of Enterobacter sakazakii as claimed in claim 3, it is characterized in that, the step 3. condition of described high resolution inductively coupled plasma emission mass spectrometric detection is: cooling gas flow is 16.86L/min, the assisted gas flow is 0.88L/min, the atomization gas flow is 1.123L/min, and power is 1350W.

6. an Enterobacter sakazakii real-time fluorescence quantitative PCR detection method, is characterized in that, institute's accepted standard material is plasmid control molecule as claimed in claim 1 or 2.

7. the application of plasmid control molecule as claimed in claim 1 or 2 in the Enterobacter sakazakii real-time fluorescence quantitative PCR detects.

8. the preparation method of the plasmid control molecule of an Enterobacter sakazakii as claimed in claim 1 or 2, is characterized in that, comprises the following steps:

1. the macromole operon for synthesizing gene order of synthetic Enterobacter sakazakii, described macromole operon for synthesizing gene order is as shown in SEQ ID NO:1 in sequence table;

2. by step 1. the macromole operon for synthesizing gene order of gained Enterobacter sakazakii be cloned on cloning vector, obtain the plasmid control molecule of Enterobacter sakazakii.

9. the preparation method of the plasmid control molecule of Enterobacter sakazakii as claimed in claim 8, is characterized in that, step 2. described cloning vector is pUC19, pUC18, pUC118, pUC119, pBlueScript II SK or pGEM.

10. the preparation method of the plasmid control molecule of Enterobacter sakazakii as claimed in claim 8, is characterized in that, step 2. described cloning vector is pUC19.

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