CN103276073B - Method for identifying mating types of lepista sordida protoplasted monokaryons and special primer pair SR-1x8b thereof - Google Patents

Method for identifying mating types of lepista sordida protoplasted monokaryons and special primer pair SR-1x8b thereof Download PDF

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CN103276073B
CN103276073B CN201310187961.3A CN201310187961A CN103276073B CN 103276073 B CN103276073 B CN 103276073B CN 201310187961 A CN201310187961 A CN 201310187961A CN 103276073 B CN103276073 B CN 103276073B
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lepista sordida
protoplastis
mating type
identified
strain
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许峰
李登进
刘宇
赵爽
王守现
王鹏
王兰青
耿小丽
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Beijing Academy of Agriculture and Forestry Sciences
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Beijing Academy of Agriculture and Forestry Sciences
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Abstract

The invention discloses a method for identifying the mating types of lepista sordida protoplasted monokaryons and a special primer pair SR-1x8b thereof. The method comprises the following steps of: taking genomes DNA of two lepista sordida protoplasted monokaryons to be identified as templates respectively, performing polymerase chain reaction (PCR) amplification by using a PCR primer pair consisting of two single chains DNA shown as SEQ ID No. 1 and SEQ ID No. 2, and detecting the magnitude of the obtained PCR products, wherein if the PCR products of both the two lepista sordida protoplasted monokaryons to be identified contain or do not contain DNA fragments of 400bp-500bp, the mating types of the two lepista sordida protoplasted monokaryons to be identified are identical; and if the PCR product of one protoplasted monokaryon contains the DNA fragments of 400bp-500bp and the PCR product of the other one does not contain the DNA fragments of 400bp-500bp, the mating types of the two lepista sordida protoplasted monokaryons to be identified are different.

Description

The method of discriminating Lepista sordida protoplastis monocaryon mating type and primer special thereof are to SR-1 × 8b
Technical field
The present invention relates to differentiate that the method for Lepista sordida protoplastis monocaryon mating type and primer special thereof are to SR-1 × 8b.
Background technology
The genetic system that system that nutrition is not affine is a kind of recognition of nonself, in most fungies, this system can cause that the upper visibly different individuality of heredity produces distinctive somatic incompatibility (Qi Yuancheng etc. at cross-connecting area, the comparison of the experiment of Chinese cultivated oyster cap fungus kind somatic incompatibility and RAPD analytical results. fungus journal, 2010,29(3)) reaction, the intensity of somatic incompatibility reaction is because of individual different different.In fungi, nutrition is not affine is called again that somatocyte is not affine or heterokaryon is not affine, and its effect is to prevent the fusion between the different individuality of gene on individuality that in same, mating type is different or the not affine site of nutrition, to keep the stability in idiogenetics.Mating type be according between the individuality of mating factor, can complete mating in conjunction with and definite bond type (China Standards Press's the first editing cubicle, Chinese agriculture standard compilation (edible fungus rolls). China Standards Press, 2010).In the syngenesis of fungi and the process of nourishing and growing, all there is mechanism or a system own or dissident identifies.The syngenesis stage is by mating type factor identification; And the identification of vegetative growth phase is undertaken by the not affine system of heterokaryon.Heterokaryon incompatibility is a kind of biological phenomena being prevalent in fungi, in the fungies such as ascomycetes, basidiomycetes, zygomycetes, is a kind of ubiquitous phenomenon.In heterokaryon forming process, non-own recognition system finally causes the core that genetic background is different can not form stable heterokaryon by the interaction of a series of protein factors, namely so-called heteronuclear incompatibility.Heterokaryon incompatibility is one and is subject to the process of gene regulating and the often mycelium meeting death of Heterokaryon incompatibility.
Heterocaryotic mycelium prepares at protoplastis the phenomenon that occurs monokaryon protoplastis in process.These monokaryon protoplastiss cultivate through regeneration and genetic screening becomes protoplastis monocaryon, because protoplastis monocaryon is to be directed to vegetative hyphae, do not live through maiotic vegetative progeny, the heredity that it is edible mushrooms and breeding research provide a kind of very important base mateiral.The cross-breeding mode of protoplastis monocaryon is to access between two same PDA flat board from double-core parent's protoplastis monocaryon respectively two, and face-off is cultivated and hybridized.In crossover process, the tenuigenin of two protoplastis monocaryons is recombinated, and forms the filial generation of a heterogeneous heteronuclear.The principal feature of this method is, be difficult in protoplastis monocaryon, disperseing and dilution according to parental trait, in the procedure of breeding, can in a smaller range of variation, go selection to there is the sterile monocaryon of parental trait, effectively overcome that the parental trait that caused by spore monocaryon genetic diversity in traditional breeding method process disperses and the obstacle of selection difficulty, reduced the workload of screening filial generation.Meanwhile, because protoplastis monocaryon obtains under laboratory condition, without seasonal restriction, therefore shortened breeding time.
Lepista sordida (Lepista sordida) belongs to Basidiomycotina (Basidiomycomycotina), Hymenomycetes (Hymenomycetes), Agaricales (Agaricales), Tricholomataceae (Tricholomataceae), Lepista lentinus (Lepista).This bacterium is nutritious, has certain medicinal efficacy.Mainly be distributed in the ground such as Guizhou, Heilungkiang, Liaoning, Hebei, Henan, Gansu, Qinghai, Sichuan, Xinjiang, Shanxi, the Inner Mongol and Fujian in China, a kind of famous and precious edible mushrooms and medicinal fungus, Lepista sordida is also in the bench-scale testing stage, wild yielding poorly and rareness, its price is extremely expensive, is a kind of wild-type strain that has very much potentiality to be exploited.But exist and yield poorly in actual production, insect resistance capacity is poor, adaptive temperature narrow range, sporophore is frangible, is difficult for the difficult problems urgently to be resolved hurrily such as transport, preservation.This just requires the relevant fundamental research of genetic breeding of Lepista sordida to go into overdrive, for traditional genetic breeding is established solid theoretical basis and technical support.
Summary of the invention
Technical problem to be solved by this invention be to provide a kind of differentiate or the auxiliary method of differentiating Lepista sordida protoplastis monocaryon mating type and primer special thereof to SR-1 × 8b.
Discriminating provided by the present invention or the auxiliary PCR primer pair of differentiating Lepista sordida protoplastis monocaryon mating type, name is called SR-1 × 8b, is made up of two single stranded DNAs shown in SEQ ID No.1 and SEQ ID No.2.
Wherein, SEQ ID No.1 is made up of 20 deoxynucleotides, and SEQ ID No.2 is made up of 20 deoxynucleotides.
The discriminating that contains PCR primer pair SR-1 × 8b or auxiliary reagent or the test kit of differentiating Lepista sordida protoplastis monocaryon mating type also belong to protection scope of the present invention.
Described reagent or test kit, except PCR primer pair SR-1 × 8b, also contain other the conventional reagent that carries out PCR and DNA sequencing.
The PCR of experimental results show that primer pair SR-1 × 8b of the present invention, the reagent that contains PCR primer pair SR-1 × 8b or test kit can be used for differentiating or the auxiliary Lepista sordida protoplastis monocaryon mating type of differentiating.
Discriminating provided by the present invention or the auxiliary method of differentiating Lepista sordida protoplastis monocaryon mating type, comprise the steps: that respectively genomic dna taking two strain Lepista sordida protoplastis monocaryons to be identified is as template, use the PCR primer pair SR-1 × 8b being formed by two single stranded DNAs of SEQ ID No.1 and SEQ ID No.2 to carry out pcr amplification, detect the size of the PCR product obtaining, determine by the following method the mating type of described two strain Lepista sordida protoplastis monocaryons to be identified according to the size of pcr amplification product:
If the PCR product of described two strain Lepista sordida protoplastis monocaryons to be identified all contains the DNA fragmentation (or the PCR product of described two strain Lepista sordida protoplastis monocaryons to be identified is the DNA fragmentation of 400bp-500bp) of 400bp-500bp, identical or the candidate of the mating type of described two strain Lepista sordida protoplastis monocaryons to be identified is that mating type is identical, if the PCR product of described two strain Lepista sordida protoplastis monocaryons to be identified does not all contain the DNA fragmentation (or the PCR product of described two strain Lepista sordida protoplastis monocaryons to be identified is all for size is the DNA fragmentation of 400bp-500bp) of 400bp-500bp, identical or the candidate of the mating type of described two strain Lepista sordida protoplastis monocaryons to be identified is that mating type is identical, if the DNA fragmentation that the PCR product of the Lepista sordida protoplastis monocaryon to be identified of the strain in described two strain Lepista sordida protoplastis monocaryons to be identified contains 400bp-500bp (or the PCR product of a strain in described two strain Lepista sordida protoplastis monocaryons to be identified Lepista sordida protoplastis monocaryon to be identified be 400bp-500bp DNA fragmentation), the PCR product of another strain Lepista sordida protoplastis monocaryon to be identified does not contain the DNA fragmentation (or the PCR product of another strain Lepista sordida protoplastis monocaryon to be identified is not the DNA fragmentation of 400bp-500bp) of 400bp-500bp, and mating type difference or the candidate of described two strain Lepista sordida protoplastis monocaryons to be identified are mating type difference.
In aforesaid method, the DNA fragmentation of described 400bp-500bp is specially the DNA fragmentation of 413bp.
In one embodiment of the invention, the primer annealing condition that described pcr amplification adopts is 57 DEG C of annealing 30s.The PCR temperature programming adopting in described pcr amplification is as follows: 94 DEG C of denaturation 5min; 94 DEG C of sex change 30s, 57 DEG C of annealing 30s, 72 DEG C are extended 40s, 30 circulations; 72 DEG C are extended 7min.
In aforesaid method, identical the referring to of mating type of described two strain Lepista sordida protoplastis monocaryons to be identified cultivated described two strain Lepista sordida protoplastis monocaryons to be identified together, between the mycelia of described two strain Lepista sordida protoplastis monocaryons to be identified, do not produce clamp connexion; The mating type difference of described two strain Lepista sordida protoplastis monocaryons to be identified refers to cultivates described two strain Lepista sordida protoplastis monocaryons to be identified together, between the mycelia of described two strain Lepista sordida protoplastis monocaryons to be identified, produces clamp connexion.
In aforesaid method, described Lepista sordida specifically can be Lepista sordida (Lepista sordida) CFCC89562.
Experimental results show that, Auele Specific Primer of the present invention has specificity to SR-1 × 8b to Lepista sordida protoplastis monocaryon, and it is 100% that the present invention utilizes the consistence of the method whether method that PCR primer pair SR-1 × 8b differentiates that whether mating type between Lepista sordida protoplastis monocaryon is identical is identical with mating type between existing somatic incompatibility experimental technique discriminating Lepista sordida protoplastis monocaryon.Present method has shortened the discriminating time of Lepista sordida protoplastis monocaryon mating type and has simplified the step that mating type is differentiated, its accuracy and reliability are high.The monocaryon obtaining by protoplastis monokaryonization is called Protoplasted monokaryon, different from spore monocaryon, protoplastis monocaryon is to prepare the haploid vegetative progeny of the monokaryon directly obtaining in process at protoplastis from Lepista sordida heterocaryotic mycelium, and therefore the Protoplasted monokaryon of Lepista sordida only has the mating type A of two kinds of forms xb xand A yb ytwo pairs.In conventional cross-breeding, only having the monokaryon bacterial strain that mating type is different is cross fertile, and therefore the qualification of mating type is prerequisite and the prerequisite of cross-breeding.The present invention is significant to genetic breeding and the production practice of research Lepista sordida.The present invention is applicable to the research of the aspect such as discriminating and genetic breeding of the relevant speciality such as Edible Fungi, strain improvement field to Lepista sordida protoplastis Protoplasted monokaryon.
Brief description of the drawings
Fig. 1 is the pcr amplification product electrophorogram to part Lepista sordida protoplastis monocaryon with primer pair SR-1 × 8b of the present invention.
In figure, 1 to No. 12 corresponding bacterial strain is followed successively by No. 110, and No. 58, No. 99, No. 67, No. 55, No. 137, No. 179, No. 69, No. 104, No. 139, No. 100, double-core bacterial strain; M:DNA Marker.
Fig. 2 is the electrophorogram that with primer SRAP-me1 and SRAP-em8, Lepista sordida protoplastis monocaryon is carried out PCR.
In figure, the bacterial strain of 1 to 12 correspondence is followed successively by: No. 110, and No. 58, No. 99, No. 67, No. 55, No. 137, No. 179, No. 69, No. 104, No. 139, No. 100, the genomic dna of double-core bacterial strain; M:DNA Marker.
Fig. 3 is the clamp connexion photo producing between the mycelia of the two strain Lepista sordida protoplastis monocaryons that mating type is different.
In figure, arrow shows clamp connexion.
Embodiment
Following embodiment is convenient to understand better the present invention, but does not limit the present invention.Experimental technique in following embodiment, if no special instructions, is ordinary method.
Material, reagent etc. used in following embodiment, if no special instructions, all can obtain from commercial channels.
Lepista sordida in following embodiment is Lepista sordida (Lepista sordida) CFCC89562, the public can be from Chinese microorganism strain preservation management committee forestry microorganism center (China Forest microbial strains preservation administrative center, China Forestry Culture Collection Center english abbreviation CFCC, is called for short forestry microorganism center) obtain.Hereinafter, be all called for short Lepista sordida.
1, the Lepista sordida protoplastis monocaryon in following embodiment all obtains by protoplastis monokaryonization, and concrete grammar is as follows:
1.1 substratum
MM damping fluid is by solute and solvent composition; Described solvent is 50mM toxilic acid damping fluid (pH5.5); Described solute and the concentration in MM damping fluid thereof are as follows: 0.5M N.F,USP MANNITOL.
Liquid MCM substratum: water-soluble to yeast extract 2g, Tryptones 2g, glucose 20g, magnesium sulfate 0.5g, potassium primary phosphate 0.5g and dipotassium hydrogen phosphate 1g and water are settled to 1L.
Solid MCM flat board: add agar in liquid MCM substratum, making its concentration is 20g/L.
The preparation method of solid regenerated flat board (RM): add sorbyl alcohol and agar in liquid MCM substratum, make its concentration be respectively 1M and 20g/L.
1.2 protoplastis preparations
1) get Lepista sordida mycelia in liquid MCM substratum, 160rpm, 25 DEG C cultivate 4 days (3-5 days all can), filter and collect mycelia with 3 layers of aseptic lens wiping paper, and then use 0.6M Osmitrol washs 2-3 time.
2) by step 1) Lepista sordida mycelia (about 1g) be suspended in 1.5% lywallzyme solution and (1.5g lywallzyme 0.6M Osmitrol dissolved and be settled to 100mL; Lywallzyme is purchased from Guangdong Bide Biotechnology Co., Ltd., catalog number: Bd_8110001023), in shaking bath (32 DEG C, 60rpm), temperature is bathed 2 hours, filters and collect filtrate with 3 layers of aseptic lens wiping paper.
3) by step 2) the centrifugal 10min of filtrate 3000rpm collecting precipitation.
4) by step 3) precipitation with after MM damping fluid washing three times, be suspended in 100 μ l MM damping fluids, be protoplastis solution.
The acquisition of 1.3 Protoplasted monokaryons
It is 10 that the protoplastis of acquisition is diluted to concentration with MM damping fluid 3-10 4individual/mL, evenly coats RM upper, and 28 DEG C leave standstill cultivation 10-14 days; After single bacterium colony that grows out, be forwarded on solid MCM substratum with aseptic inoculation pin, cultivate 5-7 days for 28 DEG C.
By the Protoplasted monokaryon number consecutively obtaining, and in the lower observation of the microscope (Olympus BX51) that amplifies 1000 times, if do not find clamp connexion, this bacterial strain is Lepista sordida protoplastis monocaryon.Obtain altogether 30 strain Lepista sordida protoplastis monocaryons, their numbering is respectively 36,42,50,53,55,58,61,65,66,67,69,71,72,75,81,82,86,87,88,99,100,104,110,111,113,117,119,137,139,179.
2, whether the mating type of discriminating Lepista sordida protoplastis monocaryon is identical
Identical the referring to of mating type of two strain Lepista sordida protoplastis monocaryons to be identified cultivated two strain Lepista sordida protoplastis monocaryons to be identified together, between the mycelia of these two strain Lepista sordida protoplastis monocaryons to be identified, do not produce clamp connexion; The mating type difference of two strain Lepista sordida protoplastis monocaryons to be identified refers to cultivates two strain Lepista sordida protoplastis monocaryons to be identified together, between the mycelia of these two strain Lepista sordida protoplastis monocaryons to be identified, produces clamp connexion.Mating type between 30 strain Lepista sordida protoplastis monocaryons in 1.3 is differentiated according to following somatic incompatibility experimental technique:
PDA substratum: 200g potato, clean peeling is cut into small pieces, and the 1000ml that adds water boils half hour, and filtered through gauze is got filtrate and is added 20g glucose and 20g agar again, 121 DEG C of sterilizings 20 minutes.
The Lepista sordida protoplastis monocaryon of two strains mating type to be identified is inoculated on PDA substratum together, opens 2cm between between the two, 25 DEG C of cultivations are observed for 10 days.If the mycelia of the Lepista sordida protoplastis monocaryon of visual inspection two strain mating type to be identified grows together, the mycelia of further confirming junction by microscopic examination does not have clamp connexion, and the mating type of the Lepista sordida protoplastis monocaryon of this two strain mating type to be identified is identical.If there is antagonism line in the place that the mycelia of the Lepista sordida protoplastis monocaryon of visual inspection two strain mating type to be identified crosses, the mycelia on picking antagonism line, being seeded on PDA substratum 25 DEG C cultivated after 5 days, whether there is clamp connexion by microscopic examination again, if without clamp connexion, the mating type of the Lepista sordida protoplastis monocaryon of this two strain mating type to be identified is identical; If there is clamp connexion, the mating type difference of the Lepista sordida protoplastis monocaryon of this two strain mating type to be identified.Fig. 3 has shown the clamp connexion producing between the mycelia of the two strain Lepista sordida protoplastis monocaryons that mating type is different.
The mating type of differentiating the 1.3 30 strain Lepista sordida protoplastis monocaryons that obtain according to the method, result as shown in Tables 1 and 2.In table 1 and table 2, between two bacterial strains of " √ " expression, somatic incompatibility experimental result shows the mating type difference of two bacterial strains; "×" represents that between two bacterial strains, somatic incompatibility experimental result shows that the mating type of two bacterial strains is identical.
Table 1. somatic incompatibility experimental technique is differentiated the whether identical result of mating type between Lepista sordida protoplastis monocaryon
? 36 42 50 53 55 58 61 65 66 67 69 71 72 75 81
36 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ?
42 × ? ? ? ? ? ? ? ? ? ? ? ? ? ?
50 √ √ ? ? ? ? ? ? ? ? ? ? ? ? ?
53 √ √ × ? ? ? ? ? ? ? ? ? ? ? ?
55 × × √ √ ? ? ? ? ? ? ? ? ? ? ?
58 × × √ √ × ? ? ? ? ? ? ? ? ? ?
61 √ √ × × √ √ ? ? ? ? ? ? ? ? ?
65 √ √ × × √ √ × ? ? ? ? ? ? ? ?
66 √ √ × × √ √ × × ? ? ? ? ? ? ?
67 × × √ √ × × √ √ √ ? ? ? ? ? ?
69 √ √ × × √ √ × × × √ ? ? ? ? ?
71 √ √ × × √ √ × × × √ × ? ? ? ?
72 √ √ × × √ √ × × × √ × × ? ? ?
75 √ √ × × √ √ × × × √ × × × ? ?
81 × × √ √ × × √ √ √ × √ √ √ √ ?
82 × × √ √ × × √ √ √ × √ √ √ √ ×
86 × × √ √ × × √ √ √ × √ √ √ √ ×
87 × × √ √ × × √ √ √ × √ √ √ √ ×
88 √ √ × × √ √ × × × √ × × × × √
99 × × √ √ × × √ √ √ × √ √ √ √ ×
100 √ √ × × √ √ × × × √ × × × × √
104 √ √ × × √ √ × × × √ × × × × √
110 × × √ √ × × √ √ √ × √ √ √ √ ×
111 √ √ × × √ √ × × × √ × × × × √
113 × × √ √ × × √ √ √ × √ √ √ √ ×
117 × × √ √ × × √ √ √ × √ √ √ √ ×
119 × × √ √ × × √ √ √ × √ √ √ √ ×
137 × × √ √ × × √ √ √ × √ √ √ √ ×
139 √ √ × × √ √ × × × √ × × × × √
179 √ √ × × √ √ × × × √ × × × × √
Table 2. somatic incompatibility experimental technique is differentiated the whether identical result of mating type between Lepista sordida protoplastis monocaryon
? 82 86 87 88 99 100 104 110 111 113 117 119 137 139 179
36 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ?
42 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ?
50 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ?
53 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ?
55 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ?
58 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ?
61 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ?
65 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ?
66 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ?
67 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ?
69 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ?
71 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ?
72 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ?
75 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ?
81 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ?
82 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ?
86 × ? ? ? ? ? ? ? ? ? ? ? ? ? ?
87 × × ? ? ? ? ? ? ? ? ? ? ? ? ?
88 √ √ √ ? ? ? ? ? ? ? ? ? ? ? ?
99 × × × √ ? ? ? ? ? ? ? ? ? ? ?
100 √ √ √ × √ ? ? ? ? ? ? ? ? ? ?
104 √ √ √ × √ × ? ? ? ? ? ? ? ? ?
110 × × × √ × √ √ ? ? ? ? ? ? ? ?
111 √ √ √ × √ × × √ ? ? ? ? ? ? ?
113 × × × √ × √ √ × √ ? ? ? ? ? ?
117 × × × √ × √ √ × √ × ? ? ? ? ?
119 × × × √ × √ √ × √ × × ? ? ? ?
137 × × × √ × √ √ × √ × × × ? ? ?
139 √ √ √ × √ × × √ × √ √ √ √ ? ?
179 √ √ √ × √ × × √ × √ √ √ √ × ?
Embodiment 1, utilize PCR primer pair SR-1 × 8b to differentiate the mating type of Lepista sordida protoplastis monocaryon
1, differentiate or assist the PCR reagent of differentiating Lepista sordida protoplastis monocaryon mating type
The discriminating of the present embodiment or the auxiliary reagent of differentiating Lepista sordida protoplastis monocaryon mating type are by PCR primer pair SR-1 × 8b, 10 × Taq damping fluid, dNTP mix, Taq archaeal dna polymerase and ddH 2o composition.
Wherein, PCR primer pair SR-1 × 8b is made up of SR-1 × 8b-F and these two single stranded DNAs of SR-1 × 8b-R, and its sequence is as follows:
SR-1×8b-F:5’-TTGCCCAAATCCCTACTTCC-3’（SEQ?ID?No.1），
SR-1×8b-R:5’-ATCAGGCGGTCTTTGTAGTC-3’（SEQ?ID?No.2）。
10 × Taq damping fluid, dNTP mix and Taq archaeal dna polymerase are all purchased from Sheng Xubai river, Beijing company (CNS).
2, differentiate or assist and differentiate Lepista sordida protoplastis monocaryon mating type
The above-mentioned 1.3 30 strain Lepista sordida protoplastis monocaryons that obtain are inoculated into respectively on PDA substratum, cultivate 7-10 days for 25 DEG C, the about 0.1g of mycelia on scraping PDA substratum, with the DNeasy Plant Mini Kit extraction DNA of QIAGEN.
Measure the concentration of gained DNA solution with extinction photometer, dilution stoste, making its OD value is 1, concentration is 50ng/ μ L.
Every strain Lepista sordida protoplastis monocaryon all adopts following PCR system and following PCR condition, taking Lepista sordida protoplastis monocaryon genomic dna as template, utilize the discriminating of step 1 or the auxiliary reagent of differentiating Lepista sordida protoplastis monocaryon mating type to carry out pcr amplification respectively.PCR reaction system is as shown in table 3:
The PCR reaction system of table 3,20 μ L
PCR temperature programming: 94 DEG C of denaturation 5min; 94 DEG C of sex change 30s, 57 DEG C of annealing 30s, 72 DEG C are extended 40s, 30 circulations; 72 DEG C are extended 7min, 12 DEG C of preservations.
By pcr amplification product electrophoresis on 1.3% sepharose of every strain Lepista sordida protoplastis monocaryon, gel imaging, result shows that the PCR product of 36,42,55,58,67,81,82,86,87,99,110,113,117,119, No. 137 Lepista sordida protoplastis monocaryons is the DNA band (DNA fragmentation) of a 400bp-500bp; 50, in the PCR product of 53,61,65,66,69,71,72,75,88,100,104,111,139, No. 179 Lepista sordida protoplastis monocaryons, there is no DNA band.Fig. 1 has shown the pcr amplification product of part Lepista sordida protoplastis monocaryon.
Reclaim respectively the DNA band (DNA fragmentation) of the 400bp-500bp of every strain Lepista sordida protoplastis monocaryon, check order, result shows that the size of the DNA band (DNA fragmentation) of the 400bp-500bp of 15 all strain Lepista sordida protoplastis monocaryons is 413bp.
Determine according to the size of pcr amplification product that by the following method whether the mating type between every two strain bacterial strains of the above-mentioned 1.3 30 strain Lepista sordida protoplastis monocaryons that obtain is identical: if the PCR product of two strain Lepista sordida protoplastis monocaryons to be identified all contains the DNA fragmentation of 400bp-500bp, described two strain Lepista sordida protoplastis monocaryons to be identified are the bacterial strain that mating type is identical, if the PCR product of two strain Lepista sordida protoplastis monocaryons to be identified does not all contain the DNA fragmentation of 400bp-500bp, described two strain Lepista sordida protoplastis monocaryons to be identified are the bacterial strain that mating type is identical, if the DNA fragmentation that the PCR product of the Lepista sordida protoplastis monocaryon to be identified of the strain in two strain Lepista sordida protoplastis monocaryons to be identified contains 400bp-500bp, the PCR product of another strain Lepista sordida protoplastis monocaryon to be identified does not contain the DNA fragmentation of 400bp-500bp, and described two strain Lepista sordida protoplastis monocaryons to be identified are the bacterial strain that mating type is different.
The present invention utilizes result that PCR primer pair SR-1 × 8b differentiates that whether the mating type of every two strain Lepista sordida protoplastis monocaryons is identical as shown in table 4 and 5.Show that the present invention utilizes method that PCR primer pair SR-1 × 8b differentiates that whether the mating type of every two strain Lepista sordida protoplastis monocaryons is identical and existing somatic incompatibility experimental technique to differentiate that the consistence of the method (table 1 and 2) whether mating type between Lepista sordida protoplastis monocaryon is identical is 100%.
The mating type of differentiating the 1.3 30 strain Lepista sordida protoplastis monocaryons that obtain according to the method, result is as shown in table 4 and 5.In table 4 and table 5, " √ " represents that the present invention utilizes the mating type difference between the two strain Lepista sordida protoplastis monocaryons that PCR primer pair SR-1 × 8b differentiates, "×" represents that the present invention utilizes the mating type between the two strain Lepista sordida protoplastis monocaryons that PCR primer pair SR-1 × 8b differentiates identical.
Table 4, the present invention utilize PCR primer pair SR-1 × 8b to differentiate the whether identical result of mating type between Lepista sordida protoplastis monocaryon.
? 36 42 50 53 55 58 61 65 66 67 69 71 72 75 81
36 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ?
42 × ? ? ? ? ? ? ? ? ? ? ? ? ? ?
50 √ √ ? ? ? ? ? ? ? ? ? ? ? ? ?
53 √ √ × ? ? ? ? ? ? ? ? ? ? ? ?
55 × × √ √ ? ? ? ? ? ? ? ? ? ? ?
58 × × √ √ × ? ? ? ? ? ? ? ? ? ?
61 √ √ × × √ √ ? ? ? ? ? ? ? ? ?
65 √ √ × × √ √ × ? ? ? ? ? ? ? ?
66 √ √ × × √ √ × × ? ? ? ? ? ? ?
67 × × √ √ × × √ √ √ ? ? ? ? ? ?
69 √ √ × × √ √ × × × √ ? ? ? ? ?
71 √ √ × × √ √ × × × √ × ? ? ? ?
72 √ √ × × √ √ × × × √ × × ? ? ?
75 √ √ × × √ √ × × × √ × × × ? ?
81 × × √ √ × × √ √ √ × √ √ √ √ ?
82 × × √ √ × × √ √ √ × √ √ √ √ ×
86 × × √ √ × × √ √ √ × √ √ √ √ ×
87 × × √ √ × × √ √ √ × √ √ √ √ ×
88 √ √ × × √ √ × × × √ × × × × √
99 × × √ √ × × √ √ √ × √ √ √ √ ×
100 √ √ × × √ √ × × × √ × × × × √
104 √ √ × × √ √ × × × √ × × × × √
110 × × √ √ × × √ √ √ × √ √ √ √ ×
111 √ √ × × √ √ × × × √ × × × × √
113 × × √ √ × × √ √ √ × √ √ √ √ ×
117 × × √ √ × × √ √ √ × √ √ √ √ ×
119 × × √ √ × × √ √ √ × √ √ √ √ ×
137 × × √ √ × × √ √ √ × √ √ √ √ ×
139 √ √ × × √ √ × × × √ × × × × √
179 √ √ × × √ √ × × × √ × × × × √
Table 5. the present invention utilizes PCR primer pair SR-1 × 8b to differentiate the whether identical result of mating type between Lepista sordida protoplastis monocaryon.
? 82 86 87 88 99 100 104 110 111 113 117 119 137 139 179
36 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ?
42 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ?
50 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ?
53 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ?
55 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ?
58 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ?
61 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ?
65 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ?
66 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ?
67 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ?
69 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ?
71 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ?
72 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ?
75 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ?
81 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ?
82 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ?
86 × ? ? ? ? ? ? ? ? ? ? ? ? ? ?
87 × × ? ? ? ? ? ? ? ? ? ? ? ? ?
88 √ √ √ ? ? ? ? ? ? ? ? ? ? ? ?
99 × × × √ ? ? ? ? ? ? ? ? ? ? ?
100 √ √ √ × √ ? ? ? ? ? ? ? ? ? ?
104 √ √ √ × √ × ? ? ? ? ? ? ? ? ?
110 × × × √ × √ √ ? ? ? ? ? ? ? ?
111 √ √ √ × √ × × √ ? ? ? ? ? ? ?
113 × × × √ × √ √ × √ ? ? ? ? ? ?
117 × × × √ × √ √ × √ × ? ? ? ? ?
119 × × × √ × √ √ × √ × × ? ? ? ?
137 × × × √ × √ √ × √ × × × ? ? ?
139 √ √ √ × √ × × √ × √ √ √ √ ? ?
179 √ √ √ × √ × × √ × √ √ √ √ × ?
Wherein, PCR primer pair SR-1 × 8b screens by the following method and to obtain:
1. molecule marker experiment
By the above-mentioned 1.3 30 strain Lepista sordida protoplastis monocaryons that obtain, and the double-core bacterial strain of Lepista sordida, totally 31 strain bacterial strains, are inoculated on PDA substratum, 25 DEG C of cultivations.After for some time, the about 0.1g of mycelia on scraping PDA substratum, with the DNeasy Plant Mini Kit extraction DNA of QIAGEN.
Measure the concentration of gained DNA solution with extinction photometer, dilution stoste, making its OD value is 1, concentration is about 50ng/ μ L.PCR reaction system is as shown in table 6:
The PCR reaction system of table 6:20 μ L
Wherein, upstream primer is SRAP-me1:5 '-tgagtccaaaccggata-3 ', and downstream primer is SRAP-em8:5 '-gactgcgtacgaattagc-3 '.
PCR temperature programming is: 94 DEG C of denaturation 5min; 94 DEG C of sex change 1min, 35 DEG C of annealing 1min, 72 DEG C are extended 1min, 5 circulations; 94 DEG C of sex change 1min, 50 DEG C of annealing 1min, 72 DEG C are extended 1min, 35 circulations; 72 DEG C are extended 10min, and 12 DEG C of preservations are above-mentioned amplified production, electrophoresis on 1.3% sepharose, and gel imaging, analyzes mating type specific band.Find by analysis: in the fragment obtaining with primer SRAP-me1 and SRAP-em8 amplification, a part of Protoplasted monokaryon has the fragment of a length in 700bp left and right, and another part Protoplasted monokaryon is without this band (Fig. 2).
2. the recovery of specific band and cloning and sequencing
2.1 obtain object band: the specific band of cutting No. 110 Protoplasted monokaryons of glue recovery---700bp left and right.Cut glue and reclaim the sepharose DNA recovery test kit that used kit provides for middle Ke Ruitai.Press the specification sheets operation in test kit, reclaim the DNA of specific fragment, for ligation, build recombinant vectors.
2.2 connect: linked system is that 4 μ L DNA reclaim liquid, the ddH of 4 μ L 2o, 0.5 μ L pMD19-T Vector(TaKaRa), 1 μ L T 4dNA ligase damping fluid (New England BioLabs), 0.5 μ L T 4dNA ligase (BioLabs).Configure on ice after this system, be placed in the water-bath of 16 DEG C, spend the night.
2.3 transform: the intestinal bacteria TOP10 competent cell (Tiangen) of-70 DEG C of preservations is placed in to 4 DEG C and thaws.Get 5 μ L connecting fluids and mix with the competent cell of 50 μ L, place 30min on ice, then ice bath 2min after 42 DEG C of water-bath 90s, adds liquid LB substratum (sodium-chlor, the 10g/L of 1m L; Peptone, 10g/L; Yeast powder, 5g/L), 37 DEG C, rejuvenation 1 hour under 90rpm condition.
2.4 blue hickie screenings: the good nutrient solution of rejuvenation is uniformly coated on and is added on sodium ampicillin, the IPTG of 0.024mg/mL and the solid LB substratum of 0.04mg/mL (adding the agar powder of 20g/L on liquid LB substratum) that final concentration is 0.1mg/mL, after coating evenly, the constant temperature culture 12-16 hour of 37 DEG C.After treating to grow blue hickie in flat board, draw hickie with the pipettor of 10 μ L, be seeded to and contain in the LB liquid nutrient medium that final concentration is 0.1mg/mL sodium ampicillin, at 37 DEG C, 180rpm cultivates 12-16 hour.
2.5PCR checking changing effect sample presentation order-checking: use primer pair RV-M (5 '-GAGCGGATAACAATTTCACACAGG-3 ') and M13-47 (5 '-CGCCAGGGTTTTCCCAGTCACGAC-3 '), be PCR with cultured bacterium liquid, PCR system is prepared by table 2.Response procedures is: 95 DEG C of denaturation 5min; 95 DEG C of sex change 50s, 57.8 DEG C of annealing 1min, 72 DEG C are extended 2min, 30 circulations; 72 DEG C are extended 7min, and after PCR reaction finishes, the sepharose with 1% carries out electrophoresis, ultraviolet imagery.Entrust the calm and peaceful biotechnology of Sino-U.S. (Beijing) company limited to carry out sequencing the bacterium liquid of the positive colony with object band.
The sequencing result of this 700bp left and right specific band is as SEQ ID No.3, and its size is 752bp.Design the PCR primer pair SR-1 × 8b being made up of SR-1 × 8b-F and these two single stranded DNAs of SR-1 × 8b-R according to SEQ ID No.3, its sequence is as follows:
SR-1×8b-F:5’-TTGCCCAAATCCCTACTTCC-3’（SEQ?ID?No.1），
SR-1×8b-R:5’-ATCAGGCGGTCTTTGTAGTC-3’（SEQ?ID?No.2）。

Claims (9)

1. the application of the method for discriminating or auxiliary discriminating Lepista sordida protoplastis monocaryon mating type in Lepista sordida breeding, described discriminating or the auxiliary method of differentiating Lepista sordida protoplastis monocaryon mating type, comprise the steps: that respectively genomic dna taking two strain Lepista sordida protoplastis monocaryons to be identified is as template, use the PCR primer pair being formed by two single stranded DNAs shown in SEQ ID No.1 and SEQ ID No.2 to carry out pcr amplification, detect the size of the PCR product obtaining, determine by the following method the mating type of described two strain Lepista sordida protoplastis monocaryons to be identified according to the size of pcr amplification product:
If the PCR product of described two strain Lepista sordida protoplastis monocaryons to be identified all contains the DNA fragmentation of 400bp-500bp, identical or the candidate of the mating type of described two strain Lepista sordida protoplastis monocaryons to be identified is that mating type is identical, if the PCR product of described two strain Lepista sordida protoplastis monocaryons to be identified does not all contain the DNA fragmentation of 400bp-500bp, the identical or candidate of the mating type of described two strain Lepista sordida protoplastis monocaryons to be identified is that mating type is identical; If the DNA fragmentation that the PCR product of the Lepista sordida protoplastis monocaryon to be identified of the strain in described two strain Lepista sordida protoplastis monocaryons to be identified contains 400bp-500bp, the PCR product of another strain Lepista sordida protoplastis monocaryon to be identified does not contain the DNA fragmentation of 400bp-500bp, and mating type difference or the candidate of described two strain Lepista sordida protoplastis monocaryons to be identified are mating type difference; Described Lepista sordida is CFCC 89562 at the deposit number at China Committee for Culture Collection of Microorganisms forestry microorganism center.
2. application according to claim 1, is characterized in that: the DNA fragmentation that the DNA fragmentation of described 400bp-500bp is 413bp.
3. application according to claim 1 and 2, is characterized in that: the primer annealing condition that described pcr amplification adopts is 57 DEG C of annealing 30s.
4. application according to claim 3, is characterized in that: the PCR temperature programming adopting in described pcr amplification: 94 DEG C of denaturation 5min; 94 DEG C of sex change 30s, 57 DEG C of annealing 30s, 72 DEG C are extended 40s, 30 circulations; 72 DEG C are extended 7min, 12 DEG C of preservations.
5. differentiate or the auxiliary PCR primer pair of differentiating Lepista sordida protoplastis monocaryon mating type, it is characterized in that: the name of described primer pair is called SR-1 × 8b, is made up of two single stranded DNAs shown in SEQ ID No.1 and SEQ ID No.2; Described Lepista sordida is CFCC 89562 at the deposit number at China Committee for Culture Collection of Microorganisms forestry microorganism center.
6. contain discriminating or the auxiliary reagent of differentiating Lepista sordida protoplastis monocaryon mating type of PCR primer pair claimed in claim 5; Described Lepista sordida is CFCC 89562 at the deposit number at China Committee for Culture Collection of Microorganisms forestry microorganism center.
7. contain discriminating or the auxiliary test kit of differentiating Lepista sordida protoplastis monocaryon mating type of PCR primer pair claimed in claim 5; Described Lepista sordida is CFCC 89562 at the deposit number at China Committee for Culture Collection of Microorganisms forestry microorganism center.
8. PCR primer pair claimed in claim 5, reagent claimed in claim 6 or test kit claimed in claim 7 are in discriminating or the auxiliary application of differentiating in Lepista sordida protoplastis monocaryon mating type; Described Lepista sordida is CFCC 89562 at the deposit number at China Committee for Culture Collection of Microorganisms forestry microorganism center.
9. PCR primer pair claimed in claim 5, reagent claimed in claim 6 or the application of test kit claimed in claim 7 in Lepista sordida breeding; Described Lepista sordida is CFCC 89562 at the deposit number at China Committee for Culture Collection of Microorganisms forestry microorganism center.
CN201310187961.3A 2013-05-20 2013-05-20 Method for identifying mating types of lepista sordida protoplasted monokaryons and special primer pair SR-1x8b thereof Expired - Fee Related CN103276073B (en)

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Li Dengjin et al."Development of SCAR markers to determine the mating types of Lepista nuda protoplast monokaryons".《Curr Microbiol》.2013, *

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