CN103224992B - Method for identifying mating types of Lepista sordida protoplast monokaryons and special primer pair SR-1*10 therefor - Google Patents

Method for identifying mating types of Lepista sordida protoplast monokaryons and special primer pair SR-1*10 therefor Download PDF

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CN103224992B
CN103224992B CN201310188224.5A CN201310188224A CN103224992B CN 103224992 B CN103224992 B CN 103224992B CN 201310188224 A CN201310188224 A CN 201310188224A CN 103224992 B CN103224992 B CN 103224992B
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lepista sordida
protoplastis
mating type
identified
strain
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许峰
刘宇
王守现
李登进
王鹏
赵爽
王兰青
耿小丽
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Beijing Academy of Agriculture and Forestry Sciences
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Beijing Academy of Agriculture and Forestry Sciences
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Abstract

The invention discloses a method for identifying the mating types of Lepista sordida protoplast monokaryons and a special primer pair SR-1*10 therefor. The method comprises the following steps: respectively taking genome DNAs (deoxyribonucleic acid) of two Lepista sordida protoplast monokaryons to be identified as templates, performing PCR (polymerase chain reaction) amplification by using a PCR primer pair composed of two single-chain DNAs as shown in SEQ ID NO.1 and SEQ ID NO.2, and detecting the sizes of the obtained PCR products; if both or neither of the PCR products of the two Lepista sordida protoplast monokaryons to be identified contains a DNA segment of 800-1000bp, indicating that the mating types of the two Lepista sordida protoplast monokaryons to be identified are the same; and if one of the two contains a DNA segment of 800-1000bp and the other does not contain a DNA segment of 800-1000bp, indicating that the mating types of the two Lepista sordida protoplast monokaryons to be identified are different.

Description

The method of discriminating Lepista sordida protoplastis monocaryon mating type and primer special thereof are to SR-1 * 10
Technical field
The present invention relates to differentiate that the method for Lepista sordida protoplastis monocaryon mating type and primer special thereof are to SR-1 * 10.
Background technology
The genetic system that system that nutrition is not affine is a kind of recognition of nonself, in most fungies, this system can cause that the upper visibly different individuality of heredity produces distinctive somatic incompatibility (Qi Yuancheng etc. at cross-connecting area, the comparison of the experiment of Chinese cultivated oyster cap fungus kind somatic incompatibility and RAPD analytical results. fungus journal, 2010,29(3)) reaction, the intensity of somatic incompatibility reaction is because of individual different different.In fungi, nutrition is not affine is called again that somatocyte is not affine or heterokaryon is not affine, and its effect is to prevent the fusion between the different individuality of gene on individuality that in same, mating type is different or the not affine site of nutrition, to keep the stability in idiogenetics.Mating type be according between the individuality of mating factor, can complete mating in conjunction with and definite bond type (China Standard Press's the first editing cubicle, Chinese agriculture standard compilation (edible fungus rolls). China Standard Press, 2010).In the syngenesis of fungi and the process of nourishing and growing, all there is mechanism or a system own or dissident identifies.The syngenesis stage is by mating type factor identification; And the identification of vegetative growth phase is undertaken by the not affine system of heterokaryon.Heterokaryon incompatibility is a kind of biological phenomena being prevalent in fungi, in the fungies such as ascomycetes, basidiomycetes, zygomycetes, is a kind of ubiquitous phenomenon.In heterokaryon forming process, non-own recognition system finally causes the core that genetic background is different can not form stable heterokaryon by the interaction of a series of protein factors, namely so-called heteronuclear incompatibility.Heterokaryon incompatibility is one and is subject to the process of gene regulating and the often mycelium meeting death of Heterokaryon incompatibility.
Heterocaryotic mycelium prepares at protoplastis the phenomenon that occurs monokaryon protoplastis in process.These monokaryon protoplastiss cultivate through regeneration and genetic screening becomes protoplastis monocaryon, because protoplastis monocaryon is to be directed to vegetative hyphae, do not live through maiotic vegetative progeny, the heredity that it is edible mushrooms and breeding research provide a kind of very important base mateiral.The cross-breeding mode of protoplastis monocaryon is that two, to access between two same PDA respectively from double-core parent's protoplastis monocaryon dull and stereotyped, and face-off is cultivated and hybridized.In crossover process, the tenuigenin of two protoplastis monocaryons is recombinated, and forms the filial generation of a heterogeneous heteronuclear.The principal feature of this method is, according to parental trait, be difficult in protoplastis monocaryon, disperseing and dilution, in the procedure of breeding, can in a smaller range of variation, go selection to there is the sterile monocaryon of parental trait, effectively overcome that the parental trait that caused by spore monocaryon genetic diversity in traditional breeding method process disperses and the obstacle of selection difficulty, reduced the workload of screening filial generation.Meanwhile, because protoplastis monocaryon obtains under laboratory condition, without seasonal restriction, therefore shortened breeding time.
Lepista sordida (Lepista sordida) belongs to Basidiomycotina (Basidiomycomycotina), Hymenomycetes (Hymenomycetes), Agaricales (Agaricales), Tricholomataceae (Tricholomataceae), Lepista lentinus (Lepista).This bacterium is nutritious, has certain medicinal efficacy.In China, be mainly distributed in the ground such as Guizhou, Heilungkiang, Liaoning, Hebei, Henan, Gansu, Qinghai, Sichuan, Xinjiang, Shanxi, the Inner Mongol and Fujian, a kind of famous and precious edible mushrooms and medicinal fungus, Lepista sordida is also in the bench-scale testing stage, wild yielding poorly and rareness, its price is extremely expensive, is a kind of wild-type strain that has very much potentiality to be exploited.But exist and yield poorly in actual production, insect resistance capacity is poor, adaptive temperature narrow range, sporophore is frangible, is difficult for the difficult problems urgently to be resolved hurrily such as transportation, preservation.This just requires the relevant fundamental research of genetic breeding of Lepista sordida to go into overdrive, for traditional genetic breeding is established solid theoretical basis and technical support.
Summary of the invention
Technical problem to be solved by this invention be to provide a kind of differentiate or the auxiliary method of differentiating Lepista sordida protoplastis monocaryon mating type and primer special thereof to SR-1 * 10.
Discriminating provided by the present invention or the auxiliary PCR primer pair of differentiating Lepista sordida protoplastis monocaryon mating type, name is called SR-1 * 10, two single stranded DNAs shown in SEQ ID No.1 and SEQ ID No.2, consists of.
Wherein, SEQ ID No.1 is comprised of 20 deoxynucleotides, and SEQ ID No.2 is comprised of 20 deoxynucleotides.
Reagent or the test kit of the discriminating that contains PCR primer pair SR-1 * 10 or auxiliary discriminating Lepista sordida protoplastis monocaryon mating type also belong to protection scope of the present invention.
Described reagent or test kit, except PCR primer pair SR-1 * 10, also contain other the conventional reagent that carries out PCR and DNA sequencing.
The PCR of experimental results show that primer pair of the present invention SR-1 * 10, the reagent that contains PCR primer pair SR-1 * 10 or test kit can be used for differentiating or the auxiliary Lepista sordida protoplastis monocaryon mating type of differentiating.
Discriminating provided by the present invention or the auxiliary method of differentiating Lepista sordida protoplastis monocaryon mating type, the genomic dna that comprises the steps: to take respectively two strain Lepista sordida protoplastis monocaryons to be identified is template, pcr amplification is carried out in PCR primer pair SR-1 * 10 of using two single stranded DNAs by SEQ ID No.1 and SEQ ID No.2 to form, detect the size of resulting PCR product, according to the size of pcr amplification product, determine by the following method the mating type of described two strain Lepista sordida protoplastis monocaryons to be identified:
If the PCR product of described two strain Lepista sordida protoplastis monocaryons to be identified all contains the DNA fragmentation (or the PCR product of described two strain Lepista sordida protoplastis monocaryons to be identified is the DNA fragmentation of 800bp-1000bp) of 800bp-1000bp, identical or the candidate of the mating type of described two strain Lepista sordida protoplastis monocaryons to be identified is that mating type is identical, if the PCR product of described two strain Lepista sordida protoplastis monocaryons to be identified does not all contain the DNA fragmentation (or the PCR product of described two strain Lepista sordida protoplastis monocaryons to be identified is all for size is the DNA fragmentation of 800bp-1000bp) of 800bp-1000bp, identical or the candidate of the mating type of described two strain Lepista sordida protoplastis monocaryons to be identified is that mating type is identical, if the DNA fragmentation that the PCR product of the Lepista sordida protoplastis monocaryon that the strain in described two strain Lepista sordida protoplastis monocaryons to be identified is to be identified contains 800bp-1000bp (or the PCR product of the Lepista sordida protoplastis monocaryon to be identified of the strain in described two strain Lepista sordida protoplastis monocaryons to be identified be 800bp-1000bp DNA fragmentation), the PCR product of the Lepista sordida protoplastis monocaryon that another strain is to be identified does not contain the DNA fragmentation (or the PCR product of another strain Lepista sordida protoplastis monocaryon to be identified is not the DNA fragmentation of 800bp-1000bp) of 800bp-1000bp, the mating type difference of described two strain Lepista sordida protoplastis monocaryons to be identified or candidate are that mating type is different.
In aforesaid method, the DNA fragmentation of described 800bp-1000bp is specially the DNA fragmentation of 854bp.
In one embodiment of the invention, the primer annealing condition that described pcr amplification adopts is 57 ℃ of annealing 30s.The PCR temperature programming adopting in described pcr amplification is as follows: 94 ℃ of denaturation 5min; 94 ℃ of sex change 30s, 57 ℃ of annealing 30s, 72 ℃ are extended 40s, 30 circulations; 72 ℃ are extended 7min.
In aforesaid method, identical the referring to of mating type of described two strain Lepista sordida protoplastis monocaryons to be identified cultivated described two strain Lepista sordida protoplastis monocaryons to be identified together, between the mycelia of described two strain Lepista sordida protoplastis monocaryons to be identified, do not produce clamp connexion; The mating type difference of described two strain Lepista sordida protoplastis monocaryons to be identified refers to cultivates described two strain Lepista sordida protoplastis monocaryons to be identified together, between the mycelia of described two strain Lepista sordida protoplastis monocaryons to be identified, produces clamp connexion.
In aforesaid method, described Lepista sordida specifically can be Lepista sordida (Lepista sordida) CFCC89562.
Experimental results show that, Auele Specific Primer of the present invention has specificity to SR-1 * 10 pair Lepista sordida protoplastis monocaryon, and it is 100% that the present invention utilizes the consistence of the method whether method that PCR primer pair SR-1 * 10 differentiate that whether mating type between Lepista sordida protoplastis monocaryon is identical is identical with mating type between existing somatic incompatibility experimental technique discriminating Lepista sordida protoplastis monocaryon.Present method has shortened the discriminating time of Lepista sordida protoplastis monocaryon mating type and has simplified the step that mating type is differentiated, its accuracy and reliability are high.The monocaryon obtaining by protoplastis monokaryonization is called Protoplasted monokaryon, different from spore monocaryon, protoplastis monocaryon is to prepare the haploid vegetative progeny of the monokaryon directly obtaining in process at protoplastis from Lepista sordida heterocaryotic mycelium, so the Protoplasted monokaryon of Lepista sordida only has the mating type A of two kinds of forms xb xand A yb ytwo pairs.In conventional cross-breeding, only having the monokaryon bacterial strain that mating type is different is cross fertile, so the evaluation of mating type is prerequisite and the prerequisite of cross-breeding.The present invention is significant to genetic breeding and the production practice of research Lepista sordida.The present invention is applicable to the research of the relevant speciality fields such as Edible Fungi, strain improvement to aspects such as the discriminating of Lepista sordida protoplastis Protoplasted monokaryon and genetic breedings.
Accompanying drawing explanation
Fig. 1 is the pcr amplification product electrophorogram with primer pair of the present invention SR-1 * 10 pair part Lepista sordida protoplastis monocaryon.
In figure, 1 to No. 12 corresponding bacterial strain is followed successively by: No. 110, and No. 58, No. 99, No. 67, No. 55, No. 137, No. 179, No. 69, No. 104, No. 139, No. 100, double-core bacterial strain; M:DNA Marker.
Fig. 2 is for to carry out the electrophorogram of PCR with primer SRAP-me1 and SRAP-em10 to Lepista sordida protoplastis monocaryon.
In figure, the bacterial strain of 1 to 12 correspondence is followed successively by: No. 110, and No. 58, No. 99, No. 67, No. 55, No. 137, No. 179, No. 69, No. 104, No. 139, No. 100, the genomic dna of double-core bacterial strain; M:DNA Marker.
Fig. 3 is the clamp connexion photo producing between the mycelia of the two strain Lepista sordida protoplastis monocaryons that mating type is different.
In figure, arrow shows clamp connexion.
Embodiment
Following embodiment is convenient to understand better the present invention, but does not limit the present invention.Experimental technique in following embodiment, if no special instructions, is ordinary method.
In following embodiment, material used, reagent etc., if no special instructions, all can obtain from commercial channels.
Lepista sordida in following embodiment is Lepista sordida (Lepista sordida) CFCC89562, the public can be from Chinese microorganism strain preservation management committee forestry microorganism center (China Forest microbial strains preservation administrative center, China Forestry Culture Collection Center english abbreviation CFCC, is called for short forestry microorganism center) obtain.Hereinafter, be all called for short Lepista sordida.
1, the Lepista sordida protoplastis monocaryon in following embodiment all obtains by protoplastis monokaryon, and concrete grammar is as follows:
1.1 substratum
MM damping fluid is by solute and solvent composition; Described solvent is 50mM toxilic acid damping fluid (pH5.5); Described solute and the concentration in MM damping fluid thereof are as follows: 0.5M N.F,USP MANNITOL.
Liquid MCM substratum: water-soluble and water is settled to 1L by yeast extract 2g, Tryptones 2g, glucose 20g, magnesium sulfate 0.5g, potassium primary phosphate 0.5g and dipotassium hydrogen phosphate 1g.
Solid MCM is dull and stereotyped: in liquid MCM substratum, add agar, making its concentration is 20g/L.
The preparation method of solid regenerated flat board (RM): add sorbyl alcohol and agar in liquid MCM substratum, make its concentration be respectively 1M and 20g/L.
1.2 protoplastis preparations
1) get Lepista sordida mycelia in liquid MCM substratum, 160rpm, 25 ℃ cultivate 4 days (3-5 days all can), with 3 layers of aseptic lens wiping paper, filter and collect mycelia, and then use 0.6M Osmitrol washs 2-3 time.
2) by step 1) Lepista sordida mycelia (about 1g) be suspended in 1.5% lywallzyme solution and (1.5g lywallzyme dissolved with 0.6M Osmitrol and be settled to 100mL; Lywallzyme is purchased from Guangdong Bide Biotechnology Co., Ltd., catalog number: Bd_8110001023), in shaking bath (32 ℃, 60rpm), temperature is bathed 2 hours, with 3 layers of aseptic lens wiping paper, filters and collect filtrate.
3) by step 2) the centrifugal 10min of filtrate 3000rpm collecting precipitation.
4) by step 3) precipitation with after MM damping fluid washing three times, be suspended in 100 μ l MM damping fluids, be protoplastis solution.
The acquisition of 1.3 Protoplasted monokaryons
It is 10 that the protoplastis of acquisition is diluted to concentration with MM damping fluid 3-10 4individual/mL, evenly coats RM upper, 28 ℃ of standing cultivation 10-14 days; After single bacterium colony that grows out, with aseptic inoculation pin, be forwarded on solid MCM substratum, cultivate 5-7 days for 28 ℃.
By the Protoplasted monokaryon number consecutively obtaining, and in the lower observation of the microscope (Olympus BX51) that amplifies 1000 times, if do not find clamp connexion, this bacterial strain is Lepista sordida protoplastis monocaryon.Obtain altogether 30 strain Lepista sordida protoplastis monocaryons, their numbering is respectively 36,42,50,53,55,58,61,65,66,67,69,71,72,75,81,82,86,87,88,99,100,104,110,111,113,117,119,137,139,179.
2, whether the mating type of discriminating Lepista sordida protoplastis monocaryon is identical
Identical the referring to of mating type of two strain Lepista sordida protoplastis monocaryons to be identified cultivated two strain Lepista sordida protoplastis monocaryons to be identified together, between the mycelia of the two strain Lepista sordida protoplastis monocaryons that this is to be identified, do not produce clamp connexion; The mating type difference of two strain Lepista sordida protoplastis monocaryons to be identified refers to cultivates two strain Lepista sordida protoplastis monocaryons to be identified together, between the mycelia of the two strain Lepista sordida protoplastis monocaryons that this is to be identified, produces clamp connexion.Mating type between 30 strain Lepista sordida protoplastis monocaryons in 1.3 is differentiated according to following somatic incompatibility experimental technique:
PDA substratum: 200g potato, clean peeling is cut into small pieces, and adds water 1000ml and boils half hour, and filtered through gauze, gets filtrate and adds 20g glucose and 20g agar again, 121 ℃ of sterilizings 20 minutes.
The Lepista sordida protoplastis monocaryon of two strains mating type to be identified is inoculated on PDA substratum together, opens 2cm between between the two, 25 ℃ of cultivations are observed for 10 days.If the mycelia of the Lepista sordida protoplastis monocaryon of visual inspection two strain mating type to be identified grows together, the mycelia of further confirming junction by microscopic examination does not have clamp connexion, and the mating type of the Lepista sordida protoplastis monocaryon of this two strain mating type to be identified is identical.If there is antagonism line in the place that the mycelia of the Lepista sordida protoplastis monocaryon of visual inspection two strain mating type to be identified crosses, the mycelia on picking antagonism line, being seeded on PDA substratum 25 ℃ cultivated after 5 days, by microscopic examination, whether there is clamp connexion again, if without clamp connexion, the mating type of the Lepista sordida protoplastis monocaryon of this two strain mating type to be identified is identical; If there is clamp connexion, the mating type of the Lepista sordida protoplastis monocaryon of this two strain mating type to be identified is different.Fig. 3 has shown the clamp connexion producing between the mycelia of the two strain Lepista sordida protoplastis monocaryons that mating type is different.
The mating type of differentiating the 1.3 30 strain Lepista sordida protoplastis monocaryons that obtain according to the method, result as shown in Tables 1 and 2.In table 1 and table 2, " √ " represents that between two bacterial strains, somatic incompatibility experimental result shows that the mating type of two bacterial strains is different; " * " represents that between two bacterial strains, somatic incompatibility experimental result shows that the mating type of two bacterial strains is identical.
Table 1. somatic incompatibility experimental technique is differentiated the whether identical result of mating type between Lepista sordida protoplastis monocaryon
? 36 42 50 53 55 58 61 65 66 67 69 71 72 75 81
36 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ?
42 × ? ? ? ? ? ? ? ? ? ? ? ? ? ?
50 √ √ ? ? ? ? ? ? ? ? ? ? ? ? ?
53 √ √ × ? ? ? ? ? ? ? ? ? ? ? ?
55 × × √ √ ? ? ? ? ? ? ? ? ? ? ?
58 × × √ √ × ? ? ? ? ? ? ? ? ? ?
61 √ √ × × √ √ ? ? ? ? ? ? ? ? ?
65 √ √ × × √ √ × ? ? ? ? ? ? ? ?
66 √ √ × × √ √ × × ? ? ? ? ? ? ?
67 × × √ √ × × √ √ √ ? ? ? ? ? ?
69 √ √ × × √ √ × × × √ ? ? ? ? ?
71 √ √ × × √ √ × × × √ × ? ? ? ?
72 √ √ × × √ √ × × × √ × × ? ? ?
75 √ √ × × √ √ × × × √ × × × ? ?
81 × × √ √ × × √ √ √ × √ √ √ √ ?
82 × × √ √ × × √ √ √ × √ √ √ √ ×
86 × × √ √ × × √ √ √ × √ √ √ √ ×
87 × × √ √ × × √ √ √ × √ √ √ √ ×
88 √ √ × × √ √ × × × √ × × × × √
99 × × √ √ × × √ √ √ × √ √ √ √ ×
100 √ √ × × √ √ × × × √ × × × × √
104 √ √ × × √ √ × × × √ × × × × √
110 × × √ √ × × √ √ √ × √ √ √ √ ×
111 √ √ × × √ √ × × × √ × × × × √
113 × × √ √ × × √ √ √ × √ √ √ √ ×
117 × × √ √ × × √ √ √ × √ √ √ √ ×
119 × × √ √ × × √ √ √ × √ √ √ √ ×
137 × × √ √ × × √ √ √ × √ √ √ √ ×
139 √ √ × × √ √ × × × √ × × × × √
179 √ √ × × √ √ × × × √ × × × × √
Table 2. somatic incompatibility experimental technique is differentiated the whether identical result of mating type between Lepista sordida protoplastis monocaryon
? 82 86 87 88 99 100 104 110 111 113 117 119 137 139 179
36 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ?
42 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ?
50 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ?
53 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ?
55 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ?
58 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ?
61 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ?
65 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ?
66 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ?
67 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ?
69 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ?
71 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ?
72 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ?
75 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ?
81 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ?
82 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ?
86 × ? ? ? ? ? ? ? ? ? ? ? ? ? ?
87 × × ? ? ? ? ? ? ? ? ? ? ? ? ?
88 √ √ √ ? ? ? ? ? ? ? ? ? ? ? ?
99 × × × √ ? ? ? ? ? ? ? ? ? ? ?
100 √ √ √ × √ ? ? ? ? ? ? ? ? ? ?
104 √ √ √ × √ × ? ? ? ? ? ? ? ? ?
110 × × × √ × √ √ ? ? ? ? ? ? ? ?
111 √ √ √ × √ × × √ ? ? ? ? ? ? ?
113 × × × √ × √ √ × √ ? ? ? ? ? ?
117 × × × √ × √ √ × √ × ? ? ? ? ?
119 × × × √ × √ √ × √ × × ? ? ? ?
137 × × × √ × √ √ × √ × × × ? ? ?
139 √ √ √ × √ × × √ × √ √ √ √ ? ?
179 √ √ √ × √ × × √ × √ √ √ √ × ?
Embodiment 1, utilize PCR primer pair SR-1 * 10 to differentiate the mating type of Lepista sordida protoplastis monocaryon
1, differentiate or assist the PCR reagent of differentiating Lepista sordida protoplastis monocaryon mating type
The discriminating of the present embodiment or the auxiliary reagent of differentiating Lepista sordida protoplastis monocaryon mating type are by PCR primer pair SR-1 * 10,10 * Taq damping fluid, dNTP mix, Taq archaeal dna polymerase and ddH 2o forms.
Wherein, PCR primer pair SR-1 * 10 are comprised of SR-1 * 10-F and these two single stranded DNAs of SR-1 * 10-R, and its sequence is as follows:
SR-1×10-F:5’-GGCCTCTGATTCAAGTACCA-3’（SEQ?ID?No.1），
SR-1×10-R:5’-ACTGCGTACGAATTTAGGGA-3’（SEQ?ID?No.2）。
10 * Taq damping fluid, dNTP mix and Taq archaeal dna polymerase are all purchased from Sheng Xubai river, Beijing company (CNS).
2, differentiate or assist and differentiate Lepista sordida protoplastis monocaryon mating type
The above-mentioned 1.3 30 strain Lepista sordida protoplastis monocaryons that obtain are inoculated into respectively on PDA substratum, cultivate 7-10 days for 25 ℃, the about 0.1g of mycelia on scraping PDA substratum, extracts DNA with the DNeasy Plant Mini Kit of QIAGEN.
With extinction photometer, measure the concentration of gained DNA solution, dilution stoste, making its OD value is 1, concentration is 50ng/ μ L.
Every strain Lepista sordida protoplastis monocaryon all adopts following PCR system and following PCR condition, the Lepista sordida protoplastis monocaryon genomic dna of take is respectively template, utilizes the discriminating of step 1 or the reagent of auxiliary discriminating Lepista sordida protoplastis monocaryon mating type to carry out pcr amplification.PCR reaction system is as shown in table 3:
The PCR reaction system of table 3,20 μ L
PCR temperature programming: 94 ℃ of denaturation 5min; 94 ℃ of sex change 30s, 57 ℃ of annealing 30s, 72 ℃ are extended 40s, 30 circulations; 72 ℃ are extended 7min, 12 ℃ of preservations.
By pcr amplification product electrophoresis on 1.3% sepharose of every strain Lepista sordida protoplastis monocaryon, gel imaging, result shows that the PCR product of 36,42,55,58,67,81,82,86,87,99,110,113,117,119, No. 137 Lepista sordida protoplastis monocaryons is the DNA band (DNA fragmentation) of a 800bp-1000bp; 50, in the PCR product of 53,61,65,66,69,71,72,75,88,100,104,111,139, No. 179 Lepista sordida protoplastis monocaryons, there is no DNA band.Fig. 1 has shown the pcr amplification product of part Lepista sordida protoplastis monocaryon.
Reclaim respectively the DNA band (DNA fragmentation) of the 800bp-1000bp of every strain Lepista sordida protoplastis monocaryon, check order, result shows that the size of DNA band (DNA fragmentation) of the 800bp-1000bp of 15 all strain Lepista sordida protoplastis monocaryons is 854bp.
According to the size of pcr amplification product, determine by the following method that whether the mating type between every two strain bacterial strains of the above-mentioned 1.3 30 strain Lepista sordida protoplastis monocaryons that obtain is identical: if the PCR product of two strain Lepista sordida protoplastis monocaryons to be identified all contains the DNA fragmentation of 800bp-1000bp, described two strain Lepista sordida protoplastis monocaryons to be identified are the bacterial strain that mating type is identical, if the PCR product of two strain Lepista sordida protoplastis monocaryons to be identified does not all contain the DNA fragmentation of 800bp-1000bp, described two strain Lepista sordida protoplastis monocaryons to be identified are the bacterial strain that mating type is identical, if the DNA fragmentation that the PCR product of the Lepista sordida protoplastis monocaryon that the strain in two strain Lepista sordida protoplastis monocaryons to be identified is to be identified contains 800bp-1000bp, the PCR product of the Lepista sordida protoplastis monocaryon that another strain is to be identified does not contain the DNA fragmentation of 800bp-1000bp, and described two strain Lepista sordida protoplastis monocaryons to be identified are the bacterial strain that mating type is different.
The present invention utilizes result that PCR primer pair SR-1 * 10 differentiate that whether the mating type of every two strain Lepista sordida protoplastis monocaryons is identical as shown in table 4 and 5.Show that it is 100% that the present invention utilizes the consistence of the method (table 1 and 2) whether method that PCR primer pair SR-1 * 10 differentiate that whether the mating type of every two strain Lepista sordida protoplastis monocaryons is identical is identical with mating type between existing somatic incompatibility experimental technique discriminating Lepista sordida protoplastis monocaryon.
The mating type of differentiating the 1.3 30 strain Lepista sordida protoplastis monocaryons that obtain according to the method, result is as shown in table 4 and 5.In table 4 and table 5, " √ " represents that the present invention utilizes the mating type between the two strain Lepista sordida protoplastis monocaryons that PCR primer pair SR-1 * 10 differentiate different, and " * " represents that the present invention utilizes the mating type between the two strain Lepista sordida protoplastis monocaryons that PCR primer pair SR-1 * 10 differentiate identical.
Table 4, the present invention utilize PCR primer pair SR-1 * 10 to differentiate the whether identical result of mating type between Lepista sordida protoplastis monocaryon.
? 36 42 50 53 55 58 61 65 66 67 69 71 72 75 81
36 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ?
42 × ? ? ? ? ? ? ? ? ? ? ? ? ? ?
50 √ √ ? ? ? ? ? ? ? ? ? ? ? ? ?
53 √ √ × ? ? ? ? ? ? ? ? ? ? ? ?
55 × × √ √ ? ? ? ? ? ? ? ? ? ? ?
58 × × √ √ × ? ? ? ? ? ? ? ? ? ?
61 √ √ × × √ √ ? ? ? ? ? ? ? ? ?
65 √ √ × × √ √ × ? ? ? ? ? ? ? ?
66 √ √ × × √ √ × × ? ? ? ? ? ? ?
67 × × √ √ × × √ √ √ ? ? ? ? ? ?
69 √ √ × × √ √ × × × √ ? ? ? ? ?
71 √ √ × × √ √ × × × √ × ? ? ? ?
72 √ √ × × √ √ × × × √ × × ? ? ?
75 √ √ × × √ √ × × × √ × × × ? ?
81 × × √ √ × × √ √ √ × √ √ √ √ ?
82 × × √ √ × × √ √ √ × √ √ √ √ ×
86 × × √ √ × × √ √ √ × √ √ √ √ ×
87 × × √ √ × × √ √ √ × √ √ √ √ ×
88 √ √ × × √ √ × × × √ × × × × √
99 × × √ √ × × √ √ √ × √ √ √ √ ×
100 √ √ × × √ √ × × × √ × × × × √
104 √ √ × × √ √ × × × √ × × × × √
110 × × √ √ × × √ √ √ × √ √ √ √ ×
111 √ √ × × √ √ × × × √ × × × × √
113 × × √ √ × × √ √ √ × √ √ √ √ ×
117 × × √ √ × × √ √ √ × √ √ √ √ ×
119 × × √ √ × × √ √ √ × √ √ √ √ ×
137 × × √ √ × × √ √ √ × √ √ √ √ ×
139 √ √ × × √ √ × × × √ × × × × √
179 √ √ × × √ √ × × × √ × × × × √
Table 5. the present invention utilizes PCR primer pair SR-1 * 10 to differentiate the whether identical result of mating type between Lepista sordida protoplastis monocaryon.
? 82 86 87 88 99 100 104 110 111 113 117 119 137 139 179
36 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ?
42 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ?
50 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ?
53 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ?
55 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ?
58 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ?
61 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ?
65 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ?
66 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ?
67 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ?
69 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ?
71 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ?
72 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ?
75 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ?
81 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ?
82 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ?
86 × ? ? ? ? ? ? ? ? ? ? ? ? ? ?
87 × × ? ? ? ? ? ? ? ? ? ? ? ? ?
88 √ √ √ ? ? ? ? ? ? ? ? ? ? ? ?
99 × × × √ ? ? ? ? ? ? ? ? ? ? ?
100 √ √ √ × √ ? ? ? ? ? ? ? ? ? ?
104 √ √ √ × √ × ? ? ? ? ? ? ? ? ?
110 × × × √ × √ √ ? ? ? ? ? ? ? ?
111 √ √ √ × √ × × √ ? ? ? ? ? ? ?
113 × × × √ × √ √ × √ ? ? ? ? ? ?
117 × × × √ × √ √ × √ × ? ? ? ? ?
119 × × × √ × √ √ × √ × × ? ? ? ?
137 × × × √ × √ √ × √ × × × ? ? ?
139 √ √ √ × √ × × √ × √ √ √ √ ? ?
179 √ √ √ × √ × × √ × √ √ √ √ × ?
Wherein, PCR primer pair SR-1 * 10 are screened by the following method and to be obtained:
1. molecule marker experiment
By the above-mentioned 1.3 30 strain Lepista sordida protoplastis monocaryons that obtain, and the double-core bacterial strain of Lepista sordida, totally 31 strain bacterial strains, are inoculated on PDA substratum, 25 ℃ of cultivations.After for some time, the about 0.1g of mycelia on scraping PDA substratum, extracts DNA with the DNeasy Plant Mini Kit of QIAGEN.
With extinction photometer, measure the concentration of gained DNA solution, dilution stoste, making its OD value is 1, concentration is about 50ng/ μ L.PCR reaction system is as shown in table 6:
The PCR reaction system of table 6:20 μ L
Wherein, upstream primer is SRAP-me1:5 '-tgagtccaaaccggata-3 ', and downstream primer is SRAP-em10:5 '-gactgcgtacgaatttag-3 '.
PCR temperature programming is: 94 ℃ of denaturation 5min; 94 ℃ of sex change 1min, 35 ℃ of annealing 1min, 72 ℃ are extended 1min, 5 circulations; 94 ℃ of sex change 1min, 50 ℃ of annealing 1min, 72 ℃ are extended 1min, 35 circulations; 72 ℃ are extended 10min, and 12 ℃ of preservations are above-mentioned amplified production, electrophoresis on 1.3% sepharose, and gel imaging, analyzes mating type specific band.Find by analysis: in the fragment obtaining with primer SRAP-me1 and SRAP-em10 amplification, a part of Protoplasted monokaryon has a length in the fragment of 800bp left and right, and another part Protoplasted monokaryon is without this band (Fig. 2).
2. the recovery of specific band and cloning and sequencing
2.1 obtain object band: cut the specific band that glue reclaims No. 110 Protoplasted monokaryons---800bp left and right.Cut glue and reclaim the sepharose DNA recovery test kit that used kit provides for middle Ke Ruitai.Press the specification sheets operation in test kit, reclaim the DNA of specific fragment, for ligation, build recombinant vectors.
2.2 connect: linked system is that 4 μ L DNA reclaim liquid, the ddH of 4 μ L 2o, 0.5 μ L pMD19-T Vector(TaKaRa), 1 μ L T 4dNA ligase damping fluid (New England BioLabs), 0.5 μ L T 4dNA ligase (BioLabs).On ice, configure after this system, be placed in the water-bath of 16 ℃, spend the night.
2.3 transform: the intestinal bacteria TOP10 competent cell (Tiangen) of-70 ℃ of preservations is placed in to 4 ℃ and thaws.Get 5 μ L connecting fluids and mix with the competent cell of 50 μ L, place 30min on ice, ice bath 2min after 42 ℃ of water-bath 90s then, adds liquid LB substratum (sodium-chlor, the 10g/L of 1m L; Peptone, 10g/L; Yeast powder, 5g/L), 37 ℃, under 90rpm condition, rejuvenation is 1 hour.
2.4 blue hickie screenings: the good nutrient solution of rejuvenation is uniformly coated on and is added on sodium ampicillin, the IPTG of 0.024mg/mL and the solid LB substratum of 0.04mg/mL (adding the agar powder of 20g/L on liquid LB substratum) that final concentration is 0.1mg/mL, after coating evenly, the constant temperature culture 12-16 hour of 37 ℃.After treating to grow blue hickie in flat board, with the pipettor of 10 μ L, draw hickie, be seeded to and contain in the LB liquid nutrient medium that final concentration is 0.1mg/mL sodium ampicillin, at 37 ℃, 180rpm cultivates 12-16 hour.
2.5PCR checking changing effect sample presentation order-checking: use primer pair RV-M (5 '-GAGCGGATAACAATTTCACACAGG-3 ') and M13-47 (5 '-CGCCAG GGTTTTCCCAGTCACGAC-3 '), with cultured bacterium liquid, be PCR, PCR system is pressed table 2 preparation.Response procedures is: 95 ℃ of denaturation 5min; 95 ℃ of sex change 50s, 57.8 ℃ of annealing 1min, 72 ℃ are extended 2min, 30 circulations; 72 ℃ are extended 7min, and after PCR reaction finishes, the sepharose with 1% carries out electrophoresis, ultraviolet imagery.Entrust the calm and peaceful biotechnology of Sino-U.S. (Beijing) company limited to carry out sequencing the bacterium liquid with the positive colony of object band.
The sequencing result of this 800bp left and right specific band is as SEQ ID No.3, and its size is 881bp.According to SEQ ID No.3, design PCR primer pair SR-1 * 10 that are comprised of SR-1 * 10-F and these two single stranded DNAs of SR-1 * 10-R, its sequence is as follows:
SR-1×10-F:5’-GGCCTCTGATTCAAGTACCA-3’（SEQ?ID?No.1），
SR-1×10-R:5’-ACTGCGTACGAATTTAGGGA-3’（SEQ?ID?No.2）。

Claims (9)

1. the application of the method for discriminating or auxiliary discriminating Lepista sordida protoplastis monocaryon mating type in Lepista sordida breeding; Described discriminating or the auxiliary method of differentiating Lepista sordida protoplastis monocaryon mating type, the genomic dna that comprises the steps: to take respectively two strain Lepista sordida protoplastis monocaryons to be identified is template, use the PCR primer pair being formed by two single stranded DNAs shown in SEQ ID No.1 and SEQ ID No.2 to carry out pcr amplification, detect the size of resulting PCR product, according to the size of pcr amplification product, determine by the following method the mating type of described two strain Lepista sordida protoplastis monocaryons to be identified:
If the PCR product of described two strain Lepista sordida protoplastis monocaryons to be identified all contains the DNA fragmentation of 800bp-1000bp, identical or the candidate of the mating type of described two strain Lepista sordida protoplastis monocaryons to be identified is that mating type is identical, if the PCR product of described two strain Lepista sordida protoplastis monocaryons to be identified does not all contain the DNA fragmentation of 800bp-1000bp, the identical or candidate of the mating type of described two strain Lepista sordida protoplastis monocaryons to be identified is that mating type is identical; If the DNA fragmentation that the PCR product of the Lepista sordida protoplastis monocaryon that the strain in described two strain Lepista sordida protoplastis monocaryons to be identified is to be identified contains 800bp-1000bp, the PCR product of the Lepista sordida protoplastis monocaryon that another strain is to be identified does not contain the DNA fragmentation of 800bp-1000bp, and the mating type difference of described two strain Lepista sordida protoplastis monocaryons to be identified or candidate are that mating type is different;
Described Lepista sordida is at the CFCC89562 that is numbered at China Committee for Culture Collection of Microorganisms forestry microorganism center.
2. application according to claim 1, is characterized in that: the DNA fragmentation that the DNA fragmentation of described 800bp-1000bp is 854bp.
3. application according to claim 1 and 2, is characterized in that: the primer annealing condition that described pcr amplification adopts is 57 ℃ of annealing 30s.
4. application according to claim 1 and 2, is characterized in that: the PCR temperature programming adopting in described pcr amplification: 94 ℃ of denaturation 5min; 94 ℃ of sex change 30s, 57 ℃ of annealing 30s, 72 ℃ are extended 40s, 30 circulations; 72 ℃ are extended 7min, 12 ℃ of preservations.
5. differentiate or the auxiliary PCR primer pair of differentiating Lepista sordida protoplastis monocaryon mating type, it is characterized in that: the name of described primer pair is called SR-1 * 10, two single stranded DNAs shown in SEQ ID No.1 and SEQ ID No.2, consists of; Described Lepista sordida is at the CFCC89562 that is numbered at China Committee for Culture Collection of Microorganisms forestry microorganism center.
6. the discriminating or the auxiliary reagent of differentiating Lepista sordida protoplastis monocaryon mating type that contain PCR primer pair claimed in claim 5; Described Lepista sordida is at the CFCC89562 that is numbered at China Committee for Culture Collection of Microorganisms forestry microorganism center.
7. the discriminating or the auxiliary test kit of differentiating Lepista sordida protoplastis monocaryon mating type that contain PCR primer pair claimed in claim 5; Described Lepista sordida is at the CFCC89562 that is numbered at China Committee for Culture Collection of Microorganisms forestry microorganism center.
8. PCR primer pair claimed in claim 5, reagent claimed in claim 6 or test kit claimed in claim 7 are being differentiated or the auxiliary application of differentiating in Lepista sordida protoplastis monocaryon mating type; Described Lepista sordida is at the CFCC89562 that is numbered at China Committee for Culture Collection of Microorganisms forestry microorganism center.
9. PCR primer pair claimed in claim 5, reagent claimed in claim 6 or the application of test kit claimed in claim 7 in Lepista sordida breeding; Described Lepista sordida is at the CFCC89562 that is numbered at China Committee for Culture Collection of Microorganisms forestry microorganism center.
CN201310188224.5A 2013-05-20 2013-05-20 Method for identifying mating types of Lepista sordida protoplast monokaryons and special primer pair SR-1*10 therefor Expired - Fee Related CN103224992B (en)

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Li Dengjin et al..Development of SCAR markers to determine the mating types of Lepista nuda protoplast monokaryons.《Curr Microbiol》.2013,第68卷(第4期),摘要，材料和方法，表1，图1-2. *

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