CN100336913C - Proto green algae micro quantitation method - Google Patents
Proto green algae micro quantitation method Download PDFInfo
- Publication number
- CN100336913C CN100336913C CNB2005100787200A CN200510078720A CN100336913C CN 100336913 C CN100336913 C CN 100336913C CN B2005100787200 A CNB2005100787200 A CN B2005100787200A CN 200510078720 A CN200510078720 A CN 200510078720A CN 100336913 C CN100336913 C CN 100336913C
- Authority
- CN
- China
- Prior art keywords
- image
- images
- cyanobacteria
- green algae
- stranded dna
- Prior art date
- Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
- Expired - Fee Related
Links
Landscapes
- Investigating Or Analysing Biological Materials (AREA)
- Investigating, Analyzing Materials By Fluorescence Or Luminescence (AREA)
Abstract
The present invention provides a micro quantitative method of prochlorococcus, which relates to a quantitative method of marine phytoplankton, particularly to a quantitative method of prochlorococcus (marine phytoplankton) by using a floor type fluorescence microscope method on the basis of time sequence observation, automatic imaging and digital analysis. The present invention provides a counting method of prochlorococcus, which comprises a sample pre-filtering step, a fixing step, a double stranded DNA fluorochrome dyeing step, a filtering step and a flaking step. A floor type fluorescence microscope which is matched with a red-sensitive electronic coupling assembly camera and a mercury lamp is used for observation, two groups of different fluorescence excitation blocks are used for observing and shooting cyanobacteria images and dye images in the same visual field, and then, the cyanobacteria images and the double stranded DNA fluorochrome images are obtained after being microscopically focused; the cells in the images are identified and analyzed to obtain new binary digitized images; the double stranded DNA fluorochrome images, the original cyanobacteria images, the cyanobacteria images of the platform period, and the binary digitized images are calculated to obtain the abundance of prochlorococcus.
Description
Technical field
The present invention relates to the quantivative approach of a kind of marine phytoplankton, especially relate to fall formula fluorescence microscopy the quantivative approach to marine phytoplankton proto green algae (Prochlorococcus) of a kind of employing based on time series observation, automated imaging and digital assay.
Background technology
Proto green algae is the highest protokaryon autotrophy photosynthetic organism of abundance in the ocean of finding recently up to now, has great ecology, evolution and resource environment meaning.Yet the proto green algae cell is minimum, fluorescence is very weak, and is provided with down at the formula fluorescent microscope (EM) that falls normally that (is 450-480nm as exciting light) temper goes out very soon, does not almost observe, more can't be accurately quantitatively (Sieracki et al., 1995; Partensky et al., 1999; Schwalbach and Fuhrman, 2005).In addition, synechococcus and proto green algae are cyanobacteria common genus (Partensky et al. in ocean environment, 1999), be provided with down at the EM of cyanobacteria, proto green algae is because the bigger cell of the tool hyperfluorescence that the signal that it sent is coexisted in the seawater sample, (Synechococcus) covers as synechococcus, so can't be observed under the initial cyanobacteria visual field.On the other hand, if cell comprises in the seawater sample that with DNA dyestuff (as DAPI, SYBR Green I) dyeing all microorganisms such as heterotrophic organism, proto green algae all will be mixed in together.So, the not recommended counting that is used for proto green algae of EM.And flow cytometer is effective tool (Sieracki et al., 1995 of proto green algae counting till now; Jiao et al., 2001), but flow cytometer is an expensive instrument, it only provides in some special-purpose laboratories.So the present invention will solve an above-mentioned difficult problem, make generally to have microscopical laboratory and can both have proto green algae and analyze quantitative ability.
Summary of the invention
The objective of the invention is to for overcome proto green algae common EM be provided with Xia temper go out soon, fluorescence is covered by synechococcus and can't observe and adopt flow cytometer to carry out the required deficiencies such as expensive expense of proto green algae counting under the initial cyanobacteria visual field, a kind of new proto green algae method of counting is provided, this method makes proto green algae just can carry out in the common lab that EM is arranged, and is easy and simple to handle.
Step of the present invention is: 1) with the pre-filtering darkling of institute's sample thief, fixing, double-stranded DNA fluorescence dye (4 ' 6-diamidino-2-phenylindole, DAPI) dyeing, filtration and film-making; 2) with being furnished with red quick electron coupling assembly (CCD) photographic camera (SPOT Diagnostic Instruments, Inc.) and the formula fluorescent microscope that falls of mercury lamp (Carl Zeiss Light MicroscopyAXIOSKOP 4) observe, respectively the cyanobacteria (Cyano) of the same visual field and double-stranded DNA fluorescence dye image are observed and are taken pictures with 2 groups of different fluorescence excitation pieces.After the micro-focusing, carry out the image that obtains on cyanobacteria and the double-stranded DNA fluorescence dye temporal sequence of images; 3) cell in the image is discerned and analyzed, and obtain new binary digit image; 4) calculate: suppose under the visual field, obtain double-stranded DNA fluorescence dye image a, initial cyanobacteria image b respectively and (focus on first cyanobacteria image that the back obtains, be bigger alga cells based on the tool hyperfluorescence of synechococcus) and the cyanobacteria image c of plateau, and obtain corresponding binary digit image d, e and f respectively, the abundance of proto green algae=Boolean AND[(d so), (f)]-and Boolean AND[(d), (e)] (wherein " Boolean AND " refers to " logical operation with ").
In step 1), the pre-filtered method of said sample is to be the bolting silk pre-filtering of 20 μ m with sample with the aperture, to remove big organic-biological body and particles of inorganic material;
Said fixing means is to be that 2% Paraformaldehyde 96 is fixed 15 minutes darkling with the sample final concentration after the pre-filtering;
The dyeing process of said double-stranded DNA fluorescence dye is to be that the DAPI of 5 μ g/ml at room temperature dyeed 30 minutes in the dark with final concentration;
Said filtration and flaking method be with the sample after the dyeing with vacuum pump and filter with less than the pressure suction filtration of 0.03MPa to the black polycarbonate film in 25mm diameter, 0.2 μ m aperture, clip 1/4 film sample (filtration has the polycarbonate membrane of sample) then, each mirror oil on slide glass and cover glass, 1/4 film sample (cell faces up) is placed on the slide glass, and back covered flattens;
In step 2) in, observe with being furnished with the red quick electron coupling assembly photographic camera and the formula fluorescent microscope that falls of 50W mercury lamp, respectively the cyanobacteria of the same visual field and double-stranded DNA fluorescence dye image are observed and taken pictures with 2 groups of different fluorescence excitation pieces, all images all obtain by automatic exposure.After the micro-focusing, carry out obtaining on cyanobacteria and the double-stranded DNA fluorescence dye temporal sequence of images, obtained an image every 60 seconds, continue 10-15 minute.
In step 3), (Media Cybernetics Inc.) discerns and analyzes the cell in the image, and obtains new binary digit image with Image-Pro Plus (IPP) software.
In step 4), calculate: suppose under the visual field, obtain DAPI image a respectively, initial cyanobacteria image b (focuses on first cyanobacteria image that the back obtains, be bigger alga cells based on the tool hyperfluorescence of synechococcus) and the cyanobacteria image c of the plateau (image of the cyanobacteria number maximum that time series obtains in observing, mainly comprise synechococcus and proto green algae, the abundance of other frustule is not enough to constitute error for a short time), and obtain corresponding binary digit image d respectively, e and f, the abundance of proto green algae=Boolean AND[(d so), (f)]-and Boolean AND[(d), (e)] (wherein " Boolean AND " refers to " logical operation with ").
Compared with the prior art, advantage of the present invention is: the popularization of technology (formula that falls fluorescent microscope all provides in common laboratory); Adopt the time series observation to count to proto green algae; And method is easy, and is easy to operate.
Embodiment
With the institute sample thief earlier with the bolting silk pre-filtering of 20 μ m to remove big organic-biological body and particles of inorganic material, the back is that 2% Paraformaldehyde 96 (PFA) is fixed 15 minutes with final concentration, be the DAPI dyeing 30 minutes of 5 μ g/ml again with final concentration, cell is filtered on black polycarbonate (PC) film (Whatman) in 0.2 μ m aperture afterwards, the film-making that faces up of clip 1/4 film sample, cell.
2. with EM film-making is observed, used fluorescence excitation piece is as follows.The cell that dyes DAPI is used for contrast, and its used fluorescence excitation piece is: 330-390nm excites, 440-490nm emission, 400-430nm beam split (Zeiss Filter set02) (Kolber et al., 2001; Zhang and Jiao, 2004) (DAPI-settings).The used fluorescence excitation piece of cyanobacteria (mainly comprising synechococcus and proto green algae) cell is: BP 546 ± 12nm excites, and LP 590nm launches (Li and Wood, 1988; Sherry and Wood, 2001), FT 580nm beam split (Zeiss Filter set 15) is (Cyano-settings).Each field of microscope oily sem observation of * 100 obtains DAPI image and cyanobacteria image simultaneously to the same visual field.All images all obtain by automatic exposure, and its " gain limit " (gain-limitation, in the automated imaging software is provided with parameter) is 8.Seasonal effect in time series DAPI and Cyano image were hunted down 10-15 minute after initial about 30 seconds focus steps continuously, and the timed interval is 60 seconds.
3. (Media Cybernetics Inc.) discerns and analyzes the cell in the image with Image-Pro Plus (IPP) software.At first, make the original image stdn by measuring the average background gray-scale value and regenerating gray level image with this.Cell boundaries in the image is with " Variance filter " (difference filtration of IPP, one in the IPP software is provided with parameter) measure and strengthen, " Variance filter " can replace 3 * 3 neighbor pixel gray-scale values on every side with the standard deviation that gray-scale value calculates.The image that generates weakens with " 3 * 3neighborhood median filter " (3 * 3 adjacent median filter, in the IPP software is provided with parameter).Last software is with the automatic recognizing cells of a gray-scale value that fixedly installs, thus the acquisition binary picture.Point in the ccd image is carried out binary digitization to produce a new image, can obtain more believable data.Background gray levels is " 0 " in this binary picture, and the point that each is identified is no matter size all is " 1 ".At last, the cellular localization between the different images can by logical operation " with " carry out.
4. calculate: suppose under the visual field, obtain DAPI image a respectively, initial cyanobacteria image b (focuses on first cyanobacteria image that the back obtains, be bigger alga cells based on the tool hyperfluorescence of synechococcus) and the cyanobacteria image c of the plateau (image of the cyanobacteria number maximum that time series obtains in observing, mainly comprise synechococcus and proto green algae, the abundance of other frustule is not enough to constitute error for a short time), and obtain corresponding binary digit fractional analysis result images d respectively, e and f, the abundance of proto green algae=Boolean AND[(d so), (f)]-and Boolean AND[(d), (e)].
Claims (9)
1, the microscopic quantity method of proto green algae is characterized in that the steps include:
1) with institute's sample thief pre-filtering, fixing, double-stranded DNA fluorescent dyeing, filter and film-making;
2) with being furnished with red quick electron coupling assembly photographic camera and the formula fluorescent microscope that falls of mercury lamp is observed, respectively the cyanobacteria of the same visual field and double-stranded DNA fluorescence dye image are observed and taken pictures with 2 groups of different fluorescence excitation pieces, after the micro-focusing, carry out the image that obtains on cyanobacteria and the double-stranded DNA fluorescence dye temporal sequence of images;
3) cell in the image is discerned and analyzed, and obtain new binary digit image;
4) calculate: suppose under the visual field, obtain double-stranded DNA fluorescence dye image a, initial cyanobacteria image b and the cyanobacteria image c of plateau respectively, and obtain corresponding binary digit image d, e and f respectively, the abundance of proto green algae=Boolean AND[(d so), (f)]-Boolean AND[(d), (e)], wherein " Boolean AND " refers to " logical operation with ", and said to focus on first cyanobacteria image that the back obtains be bigger alga cells based on the tool hyperfluorescence of synechococcus.
2, the microscopic quantity method of proto green algae as claimed in claim 1 is characterized in that in step 1), and the pre-filtered method of said sample is to be the bolting silk pre-filtering of 20 μ m with sample with the aperture, to remove big organic-biological body and particles of inorganic material.
3, the microscopic quantity method of proto green algae as claimed in claim 1 is characterized in that in step 1), and said fixing means is to be that 2% Paraformaldehyde 96 is fixed 15 minutes darkling with the sample final concentration after the pre-filtering.
4, the microscopic quantity method of proto green algae as claimed in claim 1 is characterized in that in step 1), and the dyeing process of said double-stranded DNA fluorescence dye is to be that the DAPI of 5 μ g/ml at room temperature dyeed 30 minutes in the dark with final concentration.
5, the microscopic quantity method of proto green algae as claimed in claim 1, it is characterized in that said filtration and flaking method be with the sample after the dyeing with vacuum pump and filter with less than the pressure suction filtration of 0.03MPa to the black polycarbonate film in 25mm diameter, 0.2 μ m aperture, clip 1/4 film sample then, each mirror oil on slide glass and cover glass, 1/4 film sample is placed on the slide glass, and back covered flattens.
6, the microscopic quantity method of proto green algae as claimed in claim 5 is characterized in that said film sample is for filtering the polycarbonate membrane that sample is arranged.
7, the microscopic quantity method of proto green algae as claimed in claim 5 is characterized in that said film like cell faces up to be placed on the slide glass that back covered flattens.
8, the microscopic quantity method of proto green algae as claimed in claim 1, it is characterized in that in step 2) in, observe with being furnished with the red quick electron coupling assembly photographic camera and the formula fluorescent microscope that falls of 50W mercury lamp, respectively the cyanobacteria of the same visual field and double-stranded DNA fluorescence dye image are observed and taken pictures with 2 groups of different fluorescence excitation pieces, all images all obtain by automatic exposure, after the micro-focusing, carry out obtaining on cyanobacteria and the double-stranded DNA fluorescence dye temporal sequence of images, obtain an image every 60 seconds, continue 10-15 minute.
9, the microscopic quantity method of proto green algae as claimed in claim 1 is characterized in that in step 3), and the cell in the image is discerned and analyzed with Image-Pro Plus software, and obtains new binary digit image.
Priority Applications (1)
| Application Number | Priority Date | Filing Date | Title |
|---|---|---|---|
| CNB2005100787200A CN100336913C (en) | 2005-06-03 | 2005-06-03 | Proto green algae micro quantitation method |
Applications Claiming Priority (1)
| Application Number | Priority Date | Filing Date | Title |
|---|---|---|---|
| CNB2005100787200A CN100336913C (en) | 2005-06-03 | 2005-06-03 | Proto green algae micro quantitation method |
Publications (2)
| Publication Number | Publication Date |
|---|---|
| CN1710095A CN1710095A (en) | 2005-12-21 |
| CN100336913C true CN100336913C (en) | 2007-09-12 |
Family
ID=35706385
Family Applications (1)
| Application Number | Title | Priority Date | Filing Date |
|---|---|---|---|
| CNB2005100787200A Expired - Fee Related CN100336913C (en) | 2005-06-03 | 2005-06-03 | Proto green algae micro quantitation method |
Country Status (1)
| Country | Link |
|---|---|
| CN (1) | CN100336913C (en) |
Cited By (1)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| CN102200510A (en) * | 2011-04-13 | 2011-09-28 | 上海出入境检验检疫局机电产品检测技术中心 | Mercuric ion concentration fluorescence detection method based on T-T mismatched DNA probe |
Families Citing this family (6)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| CN100545630C (en) * | 2006-12-18 | 2009-09-30 | 中国矿业大学(北京) | A kind of improved method for quick detection of Ramaria root spore density |
| CN101742902A (en) | 2007-04-27 | 2010-06-16 | 海洋营养公司控股有限公司 | Carbon sequestration using a floating vessel |
| WO2009016548A2 (en) * | 2007-07-27 | 2009-02-05 | Koninklijke Philips Electronics N.V. | Method and system for imaging samples |
| CN104568881B (en) * | 2014-12-30 | 2017-02-22 | 浙江大学 | Method for screening microalgae unicells which grow fast and are high in grease content through fluorescence microscope |
| CN105424669B (en) * | 2015-12-21 | 2018-09-21 | 江南大学 | Cyanobacteria denseness on-line detection device in water body |
| EP3252455A1 (en) * | 2016-05-30 | 2017-12-06 | Biomérieux | Device and method for acquiring a particle present in a sample |
-
2005
- 2005-06-03 CN CNB2005100787200A patent/CN100336913C/en not_active Expired - Fee Related
Non-Patent Citations (2)
| Title |
|---|
| 中国海原绿球藻研究 焦念志等，科学通报，第47卷第7期 2002 * |
| 水生细菌数量与菌体大小测定技术的进展 焦念志等，台湾海峡，第23卷第3期 2004 * |
Cited By (1)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| CN102200510A (en) * | 2011-04-13 | 2011-09-28 | 上海出入境检验检疫局机电产品检测技术中心 | Mercuric ion concentration fluorescence detection method based on T-T mismatched DNA probe |
Also Published As
| Publication number | Publication date |
|---|---|
| CN1710095A (en) | 2005-12-21 |
Similar Documents
| Publication | Publication Date | Title |
|---|---|---|
| CN100336913C (en) | Proto green algae micro quantitation method | |
| Koydemir et al. | Rapid imaging, detection and quantification of Giardia lamblia cysts using mobile-phone based fluorescent microscopy and machine learning | |
| EP2798350B1 (en) | Methods and systems for detecting a pathogen in a biological sample | |
| Fuchs et al. | Thin laser light sheet microscope for microbial oceanography | |
| AU2003219759B2 (en) | Methods and algorithms for cell enumeration in a low-cost cytometer | |
| Costa et al. | Quantitative image analysis for the characterization of microbial aggregates in biological wastewater treatment: a review | |
| Colin et al. | Quantitative 3D-imaging for cell biology and ecology of environmental microbial eukaryotes | |
| CN101203617A (en) | Device for rapid detection and identification of single microorganisms without preliminary growth | |
| WO2002003052A9 (en) | Laser scanning cytology with digital image capture | |
| Bennke et al. | Modification of a high-throughput automatic microbial cell enumeration system for shipboard analyses | |
| CN112813133B (en) | Method and system for detecting cell killing efficacy and application thereof | |
| JP2006238779A (en) | Method for detecting microbial cell | |
| JP2007071742A (en) | Fluorescence reading device and device for counting microorganisms | |
| KR101836830B1 (en) | Optical method for identifying cell | |
| Bills et al. | Simplified white blood cell differential: an inexpensive, smartphone-and paper-based blood cell count | |
| JP2014505465A (en) | A cell counting method for life / death discrimination by differential light absorption | |
| JP4967280B2 (en) | Microbe counting device | |
| US7316904B1 (en) | Automated pap screening using optical detection of HPV with or without multispectral imaging | |
| JP2008022776A (en) | Microorganism metering device | |
| Li et al. | A novel hematoxylin and eosin stain assay for detection of the parasitic dinoflagellate Amoebophrya | |
| CN212514272U (en) | Cell detection device and cell classification detection system based on micro-fluidic chip | |
| JP4590902B2 (en) | Filamentous fungus measurement method | |
| CN108351282B (en) | Methods for cell counting and viability measurement | |
| CN1710096A (en) | Accurate quantitation method of microbe containing cell chlorophyll in ocean | |
| JP4792880B2 (en) | Microorganism counting method and microorganism counting apparatus |
Legal Events
| Date | Code | Title | Description |
|---|---|---|---|
| C06 | Publication | ||
| PB01 | Publication | ||
| C10 | Entry into substantive examination | ||
| SE01 | Entry into force of request for substantive examination | ||
| C14 | Grant of patent or utility model | ||
| GR01 | Patent grant | ||
| C17 | Cessation of patent right | ||
| CF01 | Termination of patent right due to non-payment of annual fee |
Granted publication date: 20070912 Termination date: 20100603 |