CA3024355A1 - Methods for identification of samples - Google Patents

Methods for identification of samples Download PDF

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Publication number
CA3024355A1
CA3024355A1 CA3024355A CA3024355A CA3024355A1 CA 3024355 A1 CA3024355 A1 CA 3024355A1 CA 3024355 A CA3024355 A CA 3024355A CA 3024355 A CA3024355 A CA 3024355A CA 3024355 A1 CA3024355 A1 CA 3024355A1
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CA
Canada
Prior art keywords
sequences
barcode
nucleotide
sequence
nucleotide barcode
Prior art date
Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
Pending
Application number
CA3024355A
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English (en)
French (fr)
Inventor
Harry Cuppens
Current Assignee (The listed assignees may be inaccurate. Google has not performed a legal analysis and makes no representation or warranty as to the accuracy of the list.)
Dname-It Nv
Original Assignee
Dname-It Nv
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Priority claimed from EP16169997.0A external-priority patent/EP3246412A1/en
Priority claimed from GBGB1701908.4A external-priority patent/GB201701908D0/en
Application filed by Dname-It Nv filed Critical Dname-It Nv
Publication of CA3024355A1 publication Critical patent/CA3024355A1/en
Pending legal-status Critical Current

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Classifications

    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12QMEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6869Methods for sequencing
    • BPERFORMING OPERATIONS; TRANSPORTING
    • B01PHYSICAL OR CHEMICAL PROCESSES OR APPARATUS IN GENERAL
    • B01LCHEMICAL OR PHYSICAL LABORATORY APPARATUS FOR GENERAL USE
    • B01L3/00Containers or dishes for laboratory use, e.g. laboratory glassware; Droppers
    • B01L3/54Labware with identification means
    • B01L3/545Labware with identification means for laboratory containers
    • BPERFORMING OPERATIONS; TRANSPORTING
    • B01PHYSICAL OR CHEMICAL PROCESSES OR APPARATUS IN GENERAL
    • B01LCHEMICAL OR PHYSICAL LABORATORY APPARATUS FOR GENERAL USE
    • B01L2300/00Additional constructional details
    • B01L2300/02Identification, exchange or storage of information
    • B01L2300/021Identification, e.g. bar codes
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12QMEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q2525/00Reactions involving modified oligonucleotides, nucleic acids, or nucleotides
    • C12Q2525/10Modifications characterised by
    • C12Q2525/179Modifications characterised by incorporating arbitrary or random nucleotide sequences
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12QMEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q2535/00Reactions characterised by the assay type for determining the identity of a nucleotide base or a sequence of oligonucleotides
    • C12Q2535/122Massive parallel sequencing
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12QMEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q2545/00Reactions characterised by their quantitative nature
    • C12Q2545/10Reactions characterised by their quantitative nature the purpose being quantitative analysis
    • C12Q2545/101Reactions characterised by their quantitative nature the purpose being quantitative analysis with an internal standard/control
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12QMEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q2563/00Nucleic acid detection characterized by the use of physical, structural and functional properties
    • C12Q2563/179Nucleic acid detection characterized by the use of physical, structural and functional properties the label being a nucleic acid
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12QMEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q2563/00Nucleic acid detection characterized by the use of physical, structural and functional properties
    • C12Q2563/185Nucleic acid dedicated to use as a hidden marker/bar code, e.g. inclusion of nucleic acids to mark art objects or animals

Landscapes

  • Chemical & Material Sciences (AREA)
  • Life Sciences & Earth Sciences (AREA)
  • Organic Chemistry (AREA)
  • Proteomics, Peptides & Aminoacids (AREA)
  • Health & Medical Sciences (AREA)
  • Zoology (AREA)
  • Wood Science & Technology (AREA)
  • Engineering & Computer Science (AREA)
  • Analytical Chemistry (AREA)
  • Molecular Biology (AREA)
  • Microbiology (AREA)
  • General Health & Medical Sciences (AREA)
  • Biotechnology (AREA)
  • Genetics & Genomics (AREA)
  • Immunology (AREA)
  • General Engineering & Computer Science (AREA)
  • Bioinformatics & Cheminformatics (AREA)
  • Biochemistry (AREA)
  • Physics & Mathematics (AREA)
  • Biophysics (AREA)
  • Chemical Kinetics & Catalysis (AREA)
  • Clinical Laboratory Science (AREA)
  • Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
  • Micro-Organisms Or Cultivation Processes Thereof (AREA)
  • Investigating Or Analysing Biological Materials (AREA)
  • Apparatus Associated With Microorganisms And Enzymes (AREA)
CA3024355A 2016-05-17 2017-05-17 Methods for identification of samples Pending CA3024355A1 (en)

Applications Claiming Priority (5)

Application Number Priority Date Filing Date Title
EP16169997.0 2016-05-17
EP16169997.0A EP3246412A1 (en) 2016-05-17 2016-05-17 Methods for identification of samples
GBGB1701908.4A GB201701908D0 (en) 2017-02-06 2017-02-06 Methods for identification of samples
GB1701908.4 2017-02-06
PCT/EP2017/061902 WO2017198742A1 (en) 2016-05-17 2017-05-17 Methods for identification of samples

Publications (1)

Publication Number Publication Date
CA3024355A1 true CA3024355A1 (en) 2017-11-23

Family

ID=58992806

Family Applications (1)

Application Number Title Priority Date Filing Date
CA3024355A Pending CA3024355A1 (en) 2016-05-17 2017-05-17 Methods for identification of samples

Country Status (9)

Country Link
US (1) US12297495B2 (cg-RX-API-DMAC7.html)
EP (1) EP3458606B1 (cg-RX-API-DMAC7.html)
JP (1) JP7071341B2 (cg-RX-API-DMAC7.html)
KR (2) KR102806552B1 (cg-RX-API-DMAC7.html)
CN (1) CN109477141B (cg-RX-API-DMAC7.html)
AU (2) AU2017266299A1 (cg-RX-API-DMAC7.html)
CA (1) CA3024355A1 (cg-RX-API-DMAC7.html)
ES (1) ES3030501T3 (cg-RX-API-DMAC7.html)
WO (1) WO2017198742A1 (cg-RX-API-DMAC7.html)

Families Citing this family (11)

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Publication number Priority date Publication date Assignee Title
IT201600103909A1 (it) * 2016-10-17 2018-04-17 Marco Flavio Michele Vismara Sistema e metodo di acquisizione, trasmissione ed elaborazione di dati ematochimici
US11702653B2 (en) 2018-05-21 2023-07-18 Battelle Memorial Institute Control compositions and methods for sequencing
EP3894553B1 (en) * 2018-12-13 2025-10-08 Battelle Memorial Institute Methods for a quantitative polymerase chain reaction
US20220059187A1 (en) * 2020-08-07 2022-02-24 Oxford Nanopore Technologies Limited Methods of detecting nucleic acid barcodes
WO2022073063A1 (en) * 2020-10-06 2022-04-14 Nucleotrace Pty. Ltd. Oligonucleotides representing digital data
EP4240871A1 (en) * 2020-11-06 2023-09-13 Illumina, Inc. Detecting materials in a mixture using oligonucleotides
KR20220122095A (ko) * 2021-02-26 2022-09-02 지니너스 주식회사 분자 바코딩 효율을 향상시키기 위한 조성물 및 이의 용도
US20230048356A1 (en) * 2021-03-10 2023-02-16 Factorial Diagnostics, Inc. Cell barcoding compositions and methods
GB202108684D0 (en) * 2021-06-17 2021-08-04 Salmotrace As Method of tagging fish and other animals
DE102023205182A1 (de) * 2023-06-02 2024-12-05 Labor Berlin - Charité Vivantes GmbH Verfahren zur identitätsverifizierung von patientenproben
US12287321B2 (en) * 2023-09-08 2025-04-29 Truvian Sciences, Inc. Optical multianalyte detection

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US5459073A (en) 1991-05-08 1995-10-17 Streck Laboratories, Inc. Method and composition for preserving antigens and process for utilizing cytological material produced by same
US6030657A (en) 1994-11-01 2000-02-29 Dna Technologies, Inc. Labeling technique for countering product diversion and product counterfeiting
US5776737A (en) 1994-12-22 1998-07-07 Visible Genetics Inc. Method and composition for internal identification of samples
DE60032259D1 (de) 1999-05-06 2007-01-18 Sinai School Medicine Steganographie auf DNA basis
EP1515268A3 (en) 2001-03-01 2007-12-12 NTT Data Technology Corporation Method and system for individual authentication and digital signature utilizing article having DNA based ID information mark
WO2003052101A1 (en) * 2001-12-14 2003-06-26 Rosetta Inpharmatics, Inc. Sample tracking using molecular barcodes
GB2390055B (en) 2002-03-22 2005-09-07 Cypher Science Internat Ltd A marking apparatus
US20040157220A1 (en) * 2003-02-10 2004-08-12 Purnima Kurnool Methods and apparatus for sample tracking
US20100285985A1 (en) 2003-04-15 2010-11-11 Applied Dna Sciences, Inc. Methods and Systems for the Generation of Plurality of Security Markers and the Detection Therof
US8927213B2 (en) 2004-12-23 2015-01-06 Greg Hampikian Reference markers for biological samples
WO2005093641A1 (en) 2004-03-26 2005-10-06 Universite Libre De Bruxelles Biological samples localisation, identification and tracking, system and method using electronic tag
US20150141264A1 (en) * 2005-05-20 2015-05-21 Apdn (B.V.I.) Inc. In-field dna extraction, detection and authentication methods and systems therefor
US8785130B2 (en) 2005-07-07 2014-07-22 Bio-Id Diagnostic Inc. Use of markers including nucleotide sequence based codes to monitor methods of detection and identification of genetic material
US20070031857A1 (en) 2005-08-02 2007-02-08 Rubicon Genomics, Inc. Compositions and methods for processing and amplification of DNA, including using multiple enzymes in a single reaction
JP5235868B2 (ja) * 2006-05-11 2013-07-10 ビルケア テクノロジーズ シンガポール プライベート リミテッド オブジェクト識別方法並びに読み取りデバイス
US20080101666A1 (en) * 2006-10-30 2008-05-01 Cytyc Corporation Automated imaging system with slide marking
CA2697640C (en) 2007-09-21 2016-06-21 Katholieke Universiteit Leuven Tools and methods for genetic tests using next generation sequencing
AU2007254626A1 (en) * 2007-12-21 2009-07-09 Canon Kabushiki Kaisha Data encoding and decoding using circular configurations of marks
GB2472371B (en) 2009-04-24 2011-10-26 Selectamark Security Systems Plc Synthetic nucleotide containing compositions for use in security marking of property and/or for marking a thief or attacker
WO2012019765A1 (en) * 2010-08-10 2012-02-16 European Molecular Biology Laboratory (Embl) Methods and systems for tracking samples and sample combinations
GB201100152D0 (en) * 2011-01-06 2011-02-23 Epistem Ltd Genedrive RFID
US10144950B2 (en) * 2011-01-31 2018-12-04 Roche Sequencing Solutions, Inc. Methods of identifying multiple epitopes in cells
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JP2015523626A (ja) 2012-05-09 2015-08-13 エーピーディーエヌ (ビー.ブイ.アイ.) インコーポレイテッド デジタル表現およびその認証を用いる物理的暗号化タガントの検証
US9487828B2 (en) * 2012-05-10 2016-11-08 The General Hospital Corporation Methods for determining a nucleotide sequence contiguous to a known target nucleotide sequence
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Also Published As

Publication number Publication date
JP2019523652A (ja) 2019-08-29
WO2017198742A1 (en) 2017-11-23
CN109477141A (zh) 2019-03-15
KR102806552B1 (ko) 2025-05-13
EP3458606A1 (en) 2019-03-27
US20190300948A1 (en) 2019-10-03
CN109477141B (zh) 2022-07-12
ES3030501T3 (en) 2025-06-30
JP7071341B2 (ja) 2022-05-18
US12297495B2 (en) 2025-05-13
AU2017266299A1 (en) 2018-12-20
KR20230065357A (ko) 2023-05-11
KR20190037203A (ko) 2019-04-05
AU2023229558B2 (en) 2025-07-31
AU2023229558A1 (en) 2023-09-28
EP3458606C0 (en) 2025-04-02
EP3458606B1 (en) 2025-04-02

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